Tools

[List Alphabetically]

[Full-Page Index]

General Controls
Command Line
Model Panel
PseudoBond Panel
Accelerators On
Accelerators Off
Accelerator List
IDLE

Viewing Controls
Side View
Camera
Effects
Lighting
Shininess Control

Depiction
Color Secondary Structure
Rainbow
PipesAndPlanks
Nucleotides
Ribbon Style Editor
Render by Attribute
Surface Capping
Per-Model Clipping
Lens Inspector
PseudoBond Reader

Structure Analysis
FindHBond
Find Clashes/Contacts
Sequence
Distances
Angles/Torsions
Render by Attribute
Define Attribute
Attribute Calculator
ResProp

Structure Comparison
MatchMaker
Multalign Viewer
Match -> Align
Morph Conformations
Minrms Plot
EnsembleMatch
EnsembleTile

Structure Editing
AddH
Add Charge
Dock Prep
Minimize Structure
Adjust Torsions
Build Structure
Model Loops

Surface/Binding Analysis
FindHBond
Find Clashes/Contacts
Electrostatic Surface Coloring
Surface Capping
Surface Zone
ViewDock
Measure Volume and Area
Area/Volume from Web
Intersurf
Surfnet
DelPhiController
HearDock

MD/Ensemble Analysis
MD Movie
EnsembleMatch
EnsembleTile

Higher-Order Structure
Multiscale Models
Unit Cell
Scale Bar
Icosahedron Surface

Volume Data
Volume Viewer
Volume Eraser
Fit Models in Maps
Values at Atom Positions
Surface Color
Color Zone
DelPhiController
Volume Path Tracer
Measure Volume and Area
Phantom Force Feedback

Demos
Demo Editor

Movement
Rotation
Undo Move
Redo Move
Constrained Move

Utilities
Reply Log
2D Labels
Movie Recorder
Browser Configuration
Benchmark
Color Editor
ReadStdin

Collaboratory
Start Session
Join Session