Timeline



Jun 30, 2026: Yesterday

8:20 PM Ticket #20568 (PyTables deprecation warning for dtype() align argument in numpy 2) created by goddard@…
[…]
8:20 PM Ticket #20567 (Numeric overflow warning opening DSN6 .omap file with numpy 2) created by goddard@…
[…]
8:16 PM Ticket #20566 (Netcdf file reading error with numpy 2: ValueError: numpy.dtype size ...) created by goddard@…
[…]
7:47 PM Ticket #20565 (DCD file reader probably broken with numpy 2) created by Tom Goddard
The DCD file reader code md_crds/src/dcd/MDToolsMarch97/md_DCD.py …
7:43 PM Ticket #20564 (Several volume file readers use numpy fromstring() which does not work ...) created by goddard@…
[…]
7:42 PM Ticket #20562 (IMOD reader uses numpy array tostring() method removed in numpy 2) closed by Tom Goddard
fixed: Fixed. The numpy 1 tostring() method was a synonym for tobytes(). …
7:37 PM Ticket #20563 (IMOD file reader using numpy fromstring() where it needs frombuffer()) closed by Tom Goddard
fixed: Fixed. Use numpy frombuffer() instead of fromstring(), available in …
7:35 PM Ticket #20563 (IMOD file reader using numpy fromstring() where it needs frombuffer()) created by goddard@…
[…]
7:33 PM Ticket #20562 (IMOD reader uses numpy array tostring() method removed in numpy 2) created by goddard@…
[…]
7:29 PM Ticket #20561 (Error reading STL files with numpy 2) closed by Tom Goddard
fixed: Fixed. Use numpy frombuffer() instead of fromstring(), available in …
7:26 PM Ticket #20561 (Error reading STL files with numpy 2) created by goddard@…
[…]
7:22 PM Ticket #20560 (Opening gltf file with numpy 2 broken) closed by Tom Goddard
fixed: Fixed. Use numpy frombuffer() instead of fromstring(), available in …
7:14 PM Ticket #20560 (Opening gltf file with numpy 2 broken) created by goddard@…
[…]
6:25 PM Ticket #20559 (bool8 not in numpy2) closed by Tom Goddard
fixed
5:01 PM ChangeLog edited by Eric Pettersen
(diff)
4:56 PM Ticket #16310 (Port WriteDMS) closed by Eric Pettersen
fixed: Writing DMS files will be in tomorrow's daily build.
3:49 PM Ticket #20559 (bool8 not in numpy2) created by goddard@…
[…]
3:21 PM Ticket #16520 (Ribbon: Array argument has non-numeric values) closed by Tom Goddard
fixed: Finally got around to this change needed to support numpy 2. I made …
12:22 PM Ticket #20555 (Crash in QDockWidget::event() in ChimeraX 1.11.1) closed by Tom Goddard
duplicate: This is the usual Qt 6.9 ChimeraX 1.11.1 crash dragging a tool window. …
12:16 PM Dev2026-07-06 created by Tom Goddard
12:15 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:07 PM Ticket #20552 (MemoryError saving session with maps) closed by Tom Goddard
limitation: The ChimeraX session saving code currently copies the map data in …
11:59 AM Ticket #20558 (Avoid copying volumes to bytes when saving sessions) created by Tom Goddard
When ChimeraX includes volume data in a session file it first converts …
11:53 AM Ticket #20557 (Find Cavities crash in constitutional) created by charles.midgett@…
[…]
11:46 AM Ticket #20556 (SceneAnimation class goes into session files even when scenes and ...) created by goddard@…
[…]
9:42 AM Ticket #20553 (Session save: 'BlastProteinResults' object has no attribute 'table') closed by Eric Pettersen
duplicate: Hi Aleeza, Thanks for reporting this problem. It was fixed about 3 …
6:02 AM Ticket #20555 (Crash in QDockWidget::event() in ChimeraX 1.11.1) created by chimerax-bug-report@…
[…]
3:31 AM Ticket #20554 (Dead tool window still shown(?) [Qt 6.11?]) created by hamish.todd1@…
[…]

Jun 29, 2026:

6:10 PM Ticket #20553 (Session save: 'BlastProteinResults' object has no attribute 'table') created by aleeza.mughal@…
[…]
4:27 PM Dev2026-06-29 edited by Tom Goddard
(diff)
4:18 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:36 PM Ticket #20552 (MemoryError saving session with maps) created by mahamaya@…
[…]
2:28 PM Ticket #20551 (mmCIF handles non-orthogonal cells incorrectly) created by Tristan Croll
[…] Description Little bug Claude came across while teaching …
2:25 PM Ticket #20546 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX 1.9 crash you observed was caused by a bug in the Qt …
12:48 PM Dev2026-06-29 edited by Zach Pearson
(diff)
11:02 AM Ticket #20549 (Session restore: Unknown class name 'SceneAnimation') closed by Eric Pettersen
limitation
9:55 AM Ticket #20550 (DLL load failed while importing: An Application Control policy has ...) created by chimerax-bug-report@…
[…]

Jun 28, 2026:

7:02 PM Ticket #20549 (Session restore: Unknown class name 'SceneAnimation') created by jguardad@…
[…]

Jun 27, 2026:

1:06 PM Ticket #20548 (Qt 6.11: saving image while floating windows break main window resize) created by Tristan Croll
[…]
11:42 AM Ticket #20547 (Sequence viewer holding reference to deleted chain) created by mohammad.alhossary@…
[…]

Jun 26, 2026:

2:38 PM Ticket #20537 (Session restore: Unknown class name 'SceneAnimation') closed by Zach Pearson
not a bug
1:03 PM Ticket #20546 (Crash on Mac waking from sleep) created by mimi.mayer@…
[…]
10:38 AM Ticket #20545 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:31 AM Ticket #20544 (chirality command) closed by Eric Pettersen
not a bug

Jun 25, 2026:

5:46 PM Ticket #20543 (Sequence alignment identifiers containing spaces need to be quoted in ...) closed by Eric Pettersen
fixed: Fix: …
5:02 PM Ticket #20545 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
4:24 PM Ticket #20541 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
4:23 PM Ticket #20540 (runscript: directory) closed by Eric Pettersen
fixed: Hi Bhishem, Thanks for reporting this problem. You have to specify a …
4:00 PM Ticket #20536 (Attempt to read SQLite database file as PDB) closed by Eric Pettersen
not a bug
3:58 PM Ticket #20535 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
3:57 PM Ticket #20534 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
3:28 PM Ticket #20544 (chirality command) created by Tristan Croll
[…]
3:21 PM Ticket #20543 (Sequence alignment identifiers containing spaces need to be quoted in ...) created by goddard@…
[…]
3:13 PM DeveloperMeetings edited by Zach Pearson
(diff)
1:06 PM Ticket #20542 (ArtiaX: read RELION STAR file: Cannot interpret as a data type) created by nathalie.lavoie@…
[…]
1:02 PM Ticket #20541 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
11:13 AM Ticket #20540 (runscript: directory) created by bhishem.thakur@…
[…]
10:57 AM Ticket #20539 (ISOLDE: _populate_detail_tree: ZeroDivisionError: division by zero) created by john.heumann@…
[…]
6:57 AM Ticket #20538 (Problem restoring pseudo bonds in scenes) created by chimerax-bug-report@…
[…]

Jun 24, 2026:

10:47 PM Ticket #20537 (Session restore: Unknown class name 'SceneAnimation') created by xfang93@…
[…]
10:27 PM Ticket #20536 (Attempt to read SQLite database file as PDB) created by chimerax-bug-report@…
[…]
5:01 PM Ticket #20535 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
1:03 PM Ticket #20534 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
10:25 AM Ticket #20533 (Find Cavities not disposing of deleted structures) closed by Eric Pettersen
duplicate: Hi Morgan, Thanks for reporting this problem. It has been fixed in …
10:24 AM Ticket #19462 (Find Cavities not disposing of deleted structures) closed by Eric Pettersen
fixed: Fix: …
10:15 AM Ticket #20532 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
10:12 AM Ticket #20530 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
10:02 AM Ticket #20533 (Find Cavities not disposing of deleted structures) created by mdooley302@…
[…]
9:51 AM Ticket #20527 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:50 AM Ticket #20526 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:02 AM Ticket #20532 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
5:49 AM Ticket #20531 (Singularity definition) created by Tristan Croll
[…] chimerax-singularity.zip

Jun 23, 2026:

9:39 PM Ticket #19537 (Coulombic problem with modified nucleotides) closed by Eric Pettersen
fixed: Fix: …
5:01 PM Ticket #20530 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
3:51 PM Ticket #20529 (geopickr pickparticle command IndexError when no markers specified) closed by Tom Goddard
wontfix: I told Ben Barad about this issue and will let him fix it.
3:08 PM Ticket #20529 (geopickr pickparticle command IndexError when no markers specified) created by goddard@…
[…]
2:38 PM Ticket #20528 (Problem displaying H-bonds) created by nicolejohnson@…
[…]
2:01 PM Ticket #20432 (Large session size in 1.12) closed by Eric Pettersen
fixed: Hi Andrii, I have committed a fix which will be in the next daily …
1:23 PM Dev2026-06-29 created by Tom Goddard
1:22 PM 2026-6-25 created by Tom Goddard
1:21 PM 2026-6-18 edited by Tom Goddard
(diff)
1:18 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:02 PM Ticket #20527 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
9:02 AM Ticket #20526 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]

Jun 22, 2026:

4:59 PM Ticket #20513 (Attempt to add H-bonds to inapplicable group) closed by Eric Pettersen
fixed
4:22 PM Dev2026-06-22 edited by Tom Goddard
(diff)
2:40 PM Ticket #20432 (Large session size in 1.12) reopened by Eric Pettersen
Hi Andrii, With the session file you sent separately I can *see* the …
2:36 PM Ticket #20525 (Crash after ejecting Mac .dmg disk image) closed by Tom Goddard
limitation: macOS warns you that ejecting the disk image is going to clobber the …
2:32 PM Ticket #20519 (Crash running ChimeraX from .dmg and ejecting disk image?) closed by Tom Goddard
limitation: It looks like the user was running ChimeraX directly out of the .dmg …
2:28 PM Ticket #20525 (Crash after ejecting Mac .dmg disk image) created by goddard@…
[…]
2:22 PM Ticket #20518 (Crash drawing status line during expose event) closed by Tom Goddard
duplicate: This ChimeraX crash was probably caused by a Qt window toolkit bug. …
2:04 PM Ticket #20517 (Crash in find_close_points during autostyling) closed by Tom Goddard
can't reproduce: The user dropped an atomic model file on ChimeraX and it crashed in …
1:57 PM Ticket #20516 (Mutation scores: wrapped C/C++ object of type ScoresList has been deleted) closed by Tom Goddard
fixed: Fixed. This error happens after opening mutation scores (.csv), then …
12:29 PM Ticket #20512 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This ChimeraX crash was caused by a bug in the Qt window toolkit, and …
11:26 AM Ticket #20522 (Session restore: Unknown class name 'SceneAnimation') closed by Eric Pettersen
fixed: Glad to hear it! --Eric
11:16 AM Ticket #20524 (Error processing model table) closed by Eric Pettersen
fixed: Hi Xuewu, Thanks for reporting this problem. I have committed a fix …
11:04 AM Ticket #20523 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
10:42 AM Ticket #20520 (ffmpeg: Permission denied) closed by Eric Pettersen
duplicate: Hi Ava, Thanks for reporting this problem. It is fixed in later …
10:31 AM Ticket #20515 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
10:30 AM Ticket #20514 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
10:19 AM Ticket #20511 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
10:19 AM Ticket #20510 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:06 AM Ticket #20524 (Error processing model table) created by Xuewu.Zhang@…
[…] sp_Q9NZC2_TREM2_HUMAN_model.cif
9:02 AM Ticket #20523 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
7:24 AM Ticket #20522 (Session restore: Unknown class name 'SceneAnimation') created by olivia.lambertson@…
[…]
12:15 AM Ticket #20521 (SEQCROW: error reading XYZ file) created by rohan.cotton90@…
[…]

Jun 21, 2026:

8:52 PM Ticket #20520 (ffmpeg: Permission denied) created by acabrer2@…
[…]

Jun 20, 2026:

6:55 PM Ticket #20519 (Crash running ChimeraX from .dmg and ejecting disk image?) created by chimerax-bug-report@…
[…]
11:17 AM Ticket #20518 (Crash drawing status line during expose event) created by uthamkumar.work@…
[…] ChimeraX_pyKVFinder_bug_report.txt

Jun 19, 2026:

5:48 PM Ticket #20517 (Crash in find_close_points during autostyling) created by chimerax-bug-report@…
[…]
3:11 PM Ticket #20516 (Mutation scores: wrapped C/C++ object of type ScoresList has been deleted) created by willow.coyote-maestas@…
[…]
1:02 PM Ticket #20515 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
9:02 AM Ticket #20514 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
8:03 AM Ticket #20513 (Attempt to add H-bonds to inapplicable group) created by chimerax-bug-report@…
[…]
7:00 AM Ticket #20512 (Crash on Mac waking from sleep) created by i.lidbury@…
[…]

Jun 18, 2026:

4:44 PM Ticket #20503 (Gromacs coords out of memory despite small number of frames requested) closed by Eric Pettersen
fixed: Made the Gromacs reader honor start/step/end as the file is read, …
2:42 PM Ticket #20506 (Modeller results worse) closed by Eric Pettersen
fixed: Fix will be in tomorrow's daily build. Fix: …
1:03 PM Ticket #20511 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
10:35 AM Ticket #20509 (Crash in swap_buffers exposing status line during Mac wakeup) closed by Tom Goddard
duplicate: This ChimeraX 1.10 crash is caused by a Qt window toolkit bug and is …
10:12 AM Ticket #20508 (Crash in event loop) closed by Eric Pettersen
can't reproduce
10:09 AM Ticket #20507 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
10:08 AM Ticket #20505 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:02 AM Ticket #20510 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
7:37 AM Ticket #20509 (Crash in swap_buffers exposing status line during Mac wakeup) created by acabrer2@…
[…]

Jun 17, 2026:

7:58 PM Ticket #20508 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:02 PM Ticket #20507 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
2:44 PM 2026-6-18 edited by Tom Goddard
(diff)
2:44 PM DeveloperMeetings edited by Tom Goddard
(diff)
11:30 AM Ticket #20506 (Modeller results worse) created by roberto@…
I am using the ChimeraX modeller comparative command in both ChimeraX …
11:22 AM Ticket #20504 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: This ChimeraX 1.11 crash happens when dragging a ChimeraX tool window …
9:46 AM Ticket #20502 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:45 AM Ticket #20501 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:45 AM Ticket #20500 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:02 AM Ticket #20505 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
2:05 AM Ticket #20504 (Crash in QDockWidget::event() in Qt 6.9.2) created by ermanno.uboldi@…
[…]

Jun 16, 2026:

9:18 PM Ticket #20503 (Gromacs coords out of memory despite small number of frames requested) created by chimerax-bug-report@…
[…]
5:01 PM Ticket #20502 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
2:51 PM Dev2026-06-22 edited by Eric Pettersen
(diff)
2:07 PM Ticket #20499 (Crash showing symmetry) closed by Tom Goddard
fixed: I added a warning message when sym command makes graphical clones from …
1:02 PM Ticket #20501 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
11:41 AM Ticket #20109 (Protonate parts of a model) closed by Eric Pettersen
fixed: addh now accepts an atom spec instead of a model spec and only …
11:11 AM Dev2026-06-22 created by Tom Goddard
11:10 AM 2026-6-18 created by Tom Goddard
11:08 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:13 AM Ticket #20498 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:02 AM Ticket #20500 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
12:28 AM Ticket #20499 (Crash showing symmetry) created by chimerax-bug-report@…
[…]

Jun 15, 2026:

6:02 PM Ticket #9865 (Have child windows have independent "dockability" status) closed by Eric Pettersen
fixed: Dockability now tracked on per-window instead of a per-tool basis. …
5:02 PM Ticket #20498 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
4:31 PM Ticket #20497 (ViewDock) created by tgarts97@…
[…]
3:31 PM Dev2026-06-15 edited by Eric Pettersen
(diff)
3:30 PM Dev2026-06-15 edited by Eric Pettersen
(diff)
3:30 PM Dev2026-06-15 edited by Eric Pettersen
(diff)
3:29 PM Dev2026-06-15 edited by Eric Pettersen
(diff)
3:18 PM Dev2026-06-15 edited by Eric Pettersen
(diff)
3:16 PM Dev2026-06-15 edited by Eric Pettersen
(diff)
3:04 PM Ticket #20495 (Inadequate OpenGL) closed by Tom Goddard
limitation: ChimeraX reported the problem in its Log window: error | ChimeraX …
2:55 PM Ticket #20494 (Crash creating initial OpenGL context) closed by Tom Goddard
can't reproduce: Correction: I did a more thorough search of ChimeraX bugs, and the …
1:23 PM Ticket #20493 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
1:23 PM Ticket #20492 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
1:21 PM Ticket #20491 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
1:20 PM Ticket #20489 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
1:19 PM Ticket #20488 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
9:03 AM Ticket #20496 (ArtiaX: read RELION STAR file: Cannot interpret as a data type) created by ldillar6@…
[…]

Jun 14, 2026:

6:35 PM Ticket #20495 (Inadequate OpenGL) created by 1051196943@…
[…]
5:26 PM Ticket #20494 (Crash creating initial OpenGL context) created by afrost@…
[…]

Jun 13, 2026:

9:02 PM Ticket #20493 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
1:02 PM Ticket #20492 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
9:02 AM Ticket #20491 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
1:57 AM Ticket #20490 (DLL load failed while importing: An Application Control policy has ...) created by chimerax-bug-report@…
[…]

Jun 12, 2026:

5:31 PM Ticket #20246 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
fixed: These errors happen while handling expose events on the status line. …
5:01 PM Ticket #20489 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
12:05 PM Ticket #20487 (Crash in QtWebEngineCore::ProfileAdapter::ProfileAdapter creating html ...) closed by Tom Goddard
can't reproduce: Same reporter as #20486 which was also a crash at startup related to …
11:57 AM Ticket #20486 (Crash in QtWebEngineCore::WebContentsAdapter::initialize) closed by Tom Goddard
can't reproduce: Appears to have crashed at startup in setHtml(). Probably Qt 6.10.2 …
11:53 AM Ticket #20485 (Crash in glBufferSubData) closed by Tom Goddard
nonchimerax: ChimeraX crashed in the Mac Intel graphics driver. Unfortunately …
10:22 AM Ticket #20443 (Bad IDATM type) closed by Eric Pettersen
fixed: Fix in next daily build
8:12 AM ChangeLog edited by Elaine Meng
(diff)

Jun 11, 2026:

9:01 PM Ticket #20488 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
6:28 PM Ticket #20487 (Crash in QtWebEngineCore::ProfileAdapter::ProfileAdapter creating html ...) created by chimerax-bug-report@…
[…]
5:48 PM Ticket #20486 (Crash in QtWebEngineCore::WebContentsAdapter::initialize) created by chimerax-bug-report@…
[…]
4:59 PM Ticket #20217 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
can't reproduce: No response. In #20452, the problem disappeared on its own.
4:52 PM Ticket #20466 (DLL load failed while importing: An Application Control policy has ...) closed by Greg Couch
duplicate: Duplicate of #20217
4:52 PM Ticket #20463 (DLL load failed while importing: An Application Control policy has ...) closed by Greg Couch
duplicate: Duplicate of #20217
4:52 PM Ticket #20462 (DLL load failed while importing: An Application Control policy has ...) closed by Greg Couch
duplicate: Duplicate of #20217
4:51 PM Ticket #20348 (DLL load failed: access denied) closed by Greg Couch
duplicate
4:49 PM Ticket #20452 (DLL load failed while importing: An Application Control policy has ...) closed by Greg Couch
can't reproduce: Thanks for checking. Glad to hear that it is working now. We suspect …
4:27 PM Ticket #20483 (The slab position for PSU residues is wrong) closed by Greg Couch
fixed: It turns out that PSU was already a special case in the nucleotides …
4:12 PM Milestone 1.12 completed
New analysis capabilities: - Sequence alignment from structure …
2:54 PM Ticket #20485 (Crash in glBufferSubData) created by martakubanska@…
[…]
2:22 PM Ticket #20484 (Crash cleaning up traceback object) closed by Eric Pettersen
can't reproduce: Looks the same as #20439, though that was 1.11.1
1:10 PM 2026-6-11 edited by Tom Goddard
(diff)
11:08 AM Ticket #20484 (Crash cleaning up traceback object) created by chimerax-bug-report@…
[…]

Jun 10, 2026:

4:38 PM phenix-6-11-26 edited by Eric Pettersen
(diff)
2:50 PM phenix-6-11-26 edited by Eric Pettersen
(diff)
2:49 PM Ticket #20435 (Minimize 6i4q: KeyError: 'N') closed by Eric Pettersen
fixed: The pdbe_bio files were not supplying the full sequence information, …
1:45 PM phenix-6-11-26 edited by Eric Pettersen
(diff)
1:31 PM Ticket #20477 (Crash in event handling in QTimerInfoList::activateTimers()) closed by Tom Goddard
can't reproduce
1:30 PM Ticket #20476 (Drag select: error in glBufferData) closed by Tom Goddard
duplicate: Same user reported same problem yesterday. OpenGL out of memory on …
1:18 PM phenix-6-11-26 edited by Eric Pettersen
(diff)
1:08 PM phenix-6-11-26 edited by Eric Pettersen
(diff)
12:00 PM Ticket #20483 (The slab position for PSU residues is wrong) created by Daniel Larsson <daniel.larsson@…>
A follow-up to the visualization of modified nucleotides as “slab”. …
11:55 AM phenix-6-11-26 edited by Eric Pettersen
(diff)
11:41 AM phenix-6-11-26 created by Eric Pettersen
11:40 AM Features edited by Eric Pettersen
(diff)
11:17 AM Ticket #20482 (Render by attribute configure: 'MarkedHistogram' object has no ...) created by ever.odonnell@…
[…]
10:38 AM Ticket #20481 (Multiple consecutive Find Cavities: dead models) closed by Eric Pettersen
duplicate
10:26 AM Ticket #20479 (KVFinder on old MacOS) closed by Eric Pettersen
limitation
10:25 AM Ticket #20478 (glClear: invalid framebuffer operation on statusbar expose) closed by Eric Pettersen
duplicate
7:46 AM Ticket #20481 (Multiple consecutive Find Cavities: dead models) created by alexandrevasconcelosjr@…
[…]
7:46 AM Ticket #20480 (Multiple consecutive Find Cavities: dead models) created by alexandrevasconcelosjr@…
[…]
4:30 AM Ticket #20479 (KVFinder on old MacOS) created by chimerax-bug-report@…
[…]
3:33 AM Ticket #20478 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]

Jun 9, 2026:

6:47 PM Ticket #20477 (Crash in event handling in QTimerInfoList::activateTimers()) created by chimerax-bug-report@…
[…]
2:30 PM Ticket #20476 (Drag select: error in glBufferData) created by chimerax-bug-report@…
[…]
10:40 AM Ticket #20306 (Crash in QAccessible::uniqueId) closed by Tom Goddard
fixed: We have not received any reports of this crash since we updated to Qt …
10:38 AM Ticket #20265 (Crash in swap_buffers exposing SideView during Mac wakeup, Qt 6.10) closed by Tom Goddard
nonchimerax: The work-around described in the previous comment only prevents …
10:34 AM Ticket #20267 (glClear: invalid framebuffer operation on status line expose event) closed by Tom Goddard
fixed: This error has not been reported in ChimeraX versions from the last 5 …
9:47 AM Dev2026-06-15 created by Tom Goddard
9:46 AM 2026-6-11 created by Tom Goddard
9:45 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:43 AM Ticket #20475 (Error in glTexImage2D drawing status line) closed by Tom Goddard
nonchimerax: OpenGL out of memory trying to make a 60 KB texture for drawing status …
9:38 AM Ticket #20474 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: Qt opengl context bug. Work-around in ChimeraX 1.12 ignores status …

Jun 8, 2026:

8:27 PM Ticket #20475 (Error in glTexImage2D drawing status line) created by chimerax-bug-report@…
[…]
8:21 PM Ticket #20474 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
4:47 PM Ticket #20473 (glClear: invalid framebuffer operation on statusbar expose) closed by Eric Pettersen
duplicate
4:46 PM Ticket #20473 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
4:18 PM Ticket #20460 (Match→Align iteration: name 'copy' is not defined) closed by Eric Pettersen
fixed: Hi Kelly, Thanks for reporting this problem. Sorry you ran into …
4:06 PM Dev2026-06-08 edited by Tom Goddard
(diff)
3:02 PM Dev2026-06-08 edited by Tom Goddard
(diff)
3:02 PM Dev2026-06-08 edited by Tom Goddard
(diff)
2:41 PM Dev2026-06-08 created by Zach Pearson
2:37 PM DeveloperMeetings edited by Zach Pearson
(diff)
2:10 PM Ticket #20471 (Crash in NSAccessibility routines) closed by Tom Goddard
duplicate: Probable Qt bug.
2:09 PM Ticket #20470 (Crash in glBufferSubData() when volume threshold changed) closed by Tom Goddard
can't reproduce: Showing large 1000x1000x1000 map in image style at full resolution. …
2:05 PM Ticket #20467 (Crash in QObject::event in QAccessible::uniqueId()) closed by Tom Goddard
duplicate: Supposedly fixed in Qt 6.10.2. This report was using Qt 6.10.1.
2:02 PM Ticket #20464 (Crash in swap_buffers) closed by Tom Goddard
can't reproduce: Using ISOLDE on a MacBook Air with 8 GB of memory. Probably OpenGL …
1:57 PM Ticket #20461 (Crash in NSAccessibility routines) closed by Tom Goddard
duplicate: Probable Qt bug.
1:54 PM Ticket #20468 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Eric Pettersen
duplicate
1:41 PM Ticket #20465 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Eric Pettersen
duplicate
1:37 PM Ticket #20472 (isolde sim start: OpenMMException: Error compiling kernel) created by orhiesartepalomero@…
[…]
12:22 PM Ticket #18769 (Adjust AlphaFold pLDDT coloring to better match EBI color scale.) reopened by Tom Goddard
Eric suggests it is still worth adding a named ChimeraX palette that …
12:21 PM Ticket #20458 (Match→Align iteration: name 'copy' is not defined) closed by Eric Pettersen
duplicate: Duplicate of #20460
11:56 AM Ticket #20432 (Large session size in 1.12) closed by Eric Pettersen
can't reproduce: The ChimeraX I left running with ViewDock over the weekend produces a …
11:38 AM Ticket #20459 (Session restore: Unknown class name 'SceneAnimation') closed by Eric Pettersen
limitation
10:18 AM Ticket #20471 (Crash in NSAccessibility routines) created by chimerax-bug-report@…
[…]
7:01 AM Ticket #20470 (Crash in glBufferSubData() when volume threshold changed) created by chimerax-bug-report@…
[…]
6:09 AM Ticket #20469 (Temp file: access denied) created by chimerax-bug-report@…
[…]
2:45 AM Ticket #20468 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
1:27 AM Ticket #20467 (Crash in QObject::event in QAccessible::uniqueId()) created by chimerax-bug-report@…
[…]
1:09 AM Ticket #20466 (DLL load failed while importing: An Application Control policy has ...) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #20465 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]

Jun 7, 2026:

11:12 PM Ticket #20464 (Crash in swap_buffers) created by chimerax-bug-report@…
[…]
9:36 PM Ticket #20463 (DLL load failed while importing: An Application Control policy has ...) created by chimerax-bug-report@…
[…]
9:27 PM Ticket #20462 (DLL load failed while importing: An Application Control policy has ...) created by chimerax-bug-report@…
[…]

Jun 6, 2026:

11:16 PM Ticket #20461 (Crash in NSAccessibility routines) created by chimerax-bug-report@…
[…]
4:39 PM Ticket #20460 (Match→Align iteration: name 'copy' is not defined) created by kklee@…
[…]

Jun 5, 2026:

5:44 PM Ticket #18769 (Adjust AlphaFold pLDDT coloring to better match EBI color scale.) closed by Tom Goddard
not a bug: The colors used in the EBI coloring differ from ChimeraX …
4:21 PM Ticket #20354 (Updating 2D label text: label.drawing is None) closed by Tom Goddard
fixed: Fixed in 1.13 daily build, not in 1.12. User created a 2D label with …
11:41 AM Ticket #20459 (Session restore: Unknown class name 'SceneAnimation') created by chimerax-bug-report@…
[…]
11:09 AM Ticket #20458 (Match→Align iteration: name 'copy' is not defined) created by chimerax-bug-report@…
[…]
11:02 AM Ticket #20453 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: This ChimeraX error is due to a Qt window toolkit bug on macOS 26. We …
10:44 AM Ticket #20454 (Volume model not volume menu) closed by Tom Goddard
fixed: Fixed. The Surface Color GUI was trying to set the map used in color …
9:13 AM Ticket #20457 (glClear: invalid framebuffer operation on statusbar expose) closed by Eric Pettersen
duplicate
9:12 AM Ticket #20456 (msa3d not skipping None residues) closed by Eric Pettersen
duplicate: Hi Kelly, Thanks for reporting this problem. It was fixed about 10 …
6:27 AM Ticket #20457 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]

Jun 4, 2026:

9:02 PM Ticket #20456 (msa3d not skipping None residues) created by kklee@…
[…]
4:38 PM Ticket #20455 (isolde sim start: OpenMMException: Error compiling kernel) created by mimi.mayer@…
[…]
2:33 PM Ticket #20454 (Volume model not volume menu) created by ndempsey@…
[…]
2:14 PM Ticket #20435 (Minimize 6i4q: KeyError: 'N') reopened by Eric Pettersen
I see. It seems to be because these structures are coming from …
11:36 AM Ticket #20453 (glClear: invalid framebuffer operation on statusbar expose) created by gage.leighton@…
[…]
10:44 AM Ticket #20451 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Eric Pettersen
duplicate
10:39 AM Ticket #20450 (glClear: invalid framebuffer operation on statusbar expose) closed by Eric Pettersen
duplicate
10:37 AM Ticket #20449 (ChimeraX bug report submission) closed by Eric Pettersen
fixed: Hi, Thanks for reporting this problem. It was fixed shortly after …
10:33 AM Ticket #20448 (Session restore: Unknown class name 'SceneAnimation') closed by Eric Pettersen
limitation: Hi Xiang, Thanks for reporting this problem. Though ChimeraX …
10:29 AM Ticket #20447 (Drop event is not drop event) closed by Eric Pettersen
can't reproduce: Somehow an event whose type is QEvent::Drop is not a QDropEvent
10:20 AM Ticket #20446 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Eric Pettersen
duplicate
10:17 AM Ticket #20445 (H-Bonds: acc_phi_psi() bad number of arguments) closed by Eric Pettersen
not a bug: Hi Bapurao, Thanks for reporting this problem. In order to find …
9:35 AM Ticket #20452 (DLL load failed while importing: An Application Control policy has ...) created by david.pueyo.castillo@…
[…]
6:48 AM Ticket #20451 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
5:34 AM Ticket #20450 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
12:55 AM Ticket #20449 (ChimeraX bug report submission) created by alessandrorevenge@…
[…]

Jun 3, 2026:

10:50 PM Ticket #20448 (Session restore: Unknown class name 'SceneAnimation') created by xfang93@…
[…]
9:52 PM Ticket #20447 (Drop event is not drop event) created by chimerax-bug-report@…
[…]
4:32 PM Ticket #20446 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
2:43 PM Ticket #20445 (H-Bonds: acc_phi_psi() bad number of arguments) created by bhogeba@…
[…]
11:43 AM Ticket #20444 (inadequate OpenGL) closed by Eric Pettersen
limitation
11:13 AM Ticket #20444 (inadequate OpenGL) created by chimerax-bug-report@…
[…]
10:47 AM Ticket #20441 (Gromacs trajectory: not enough memory) closed by Eric Pettersen
can't reproduce: Hi Eduardo, Thanks for reporting this problem. Firstly, you should …
10:31 AM Ticket #20443 (Bad IDATM type) created by etienne.reboul@…
[…] target_model_3.cif
10:25 AM Ticket #20436 (KVFinder on old MacOS) closed by Eric Pettersen
limitation
1:30 AM Ticket #20442 (SEQCROW: tree itemWidget().currentData() is None) created by chimerax-bug-report@…
[…]

Jun 2, 2026:

9:07 PM Ticket #20441 (Gromacs trajectory: not enough memory) created by mauricio.martin@…
[…]
8:38 PM Ticket #20440 (Item chooser: name 'self' is not defined) created by christian.biertuempfel@…
[…]
4:01 PM Ticket #20439 (Running AL2CO subprocess: An Application Control policy blocked this file) created by chimerax-bug-report@…
[…]
2:04 PM Ticket #20415 (Crash in isolde::RotaMgr::validate) closed by Eric Pettersen
wontfix
12:13 PM Ticket #20438 (Segger: extract density not available) created by phat.dip@…
[…] Screenshot 2026-06-02 at 3.06.07 PM.png
12:05 PM Ticket #20435 (Minimize 6i4q: KeyError: 'N') closed by Eric Pettersen
fixed: Hi Paul, Thanks for reporting this problem. The issue was that in …
10:40 AM Ticket #20437 (SNFG depiction not removed when residue gone) created by Eric Pettersen
[…]
10:29 AM Ticket #20436 (KVFinder on old MacOS) created by chimerax-bug-report@…
[…]
9:04 AM Ticket #20433 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Eric Pettersen
duplicate
8:55 AM Ticket #20435 (Minimize 6i4q: KeyError: 'N') created by paul.brodersen@…
[…]
4:25 AM Ticket #20434 (DAQ Plugin will not run) created by amacha1@…
[…]
1:37 AM Ticket #20433 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]

Jun 1, 2026:

3:51 PM Ticket #20432 (Large session size in 1.12) created by iamkaant@…
[…] cxs_metrics_report.json
2:30 PM Ticket #20426 (Animations Settings should not be modal) closed by Zach Pearson
fixed: Both issues should be fixed tomorrow
2:26 PM Ticket #20431 (Session restore: Unknown class name 'SceneAnimation') closed by Eric Pettersen
duplicate
2:23 PM Ticket #20427 (Animations default movie resolution should be current display) closed by Zach Pearson
fixed: "Graphics Window (Current)" should be the default recording resolution …
2:18 PM Ticket #20430 (KVFinder on old MacOS) closed by Eric Pettersen
limitation
2:13 PM Ticket #20429 (Crash cleaning up traceback object) closed by Eric Pettersen
can't reproduce
2:04 PM Ticket #19955 (cannot change Animations output file type) closed by Zach Pearson
fixed: The dropdown should now have individual file extensions and changing …
1:58 PM Ticket #20425 (Bad model table in mmCIF file) closed by Eric Pettersen
duplicate: Hi Arvind, Thanks for reporting this problem. It is fixed in the …
1:44 PM Ticket #20423 (glGetError: invalid operation (inadequate OpenGL)) closed by Eric Pettersen
limitation
1:40 PM Ticket #20422 (DLL load failed while importing: An Application Control policy has ...) closed by Eric Pettersen
duplicate
1:37 PM Ticket #20431 (Session restore: Unknown class name 'SceneAnimation') created by chimerax-bug-report@…
[…]
1:32 PM Ticket #20420 (Crash in QDockWidget::event() moving window) closed by Eric Pettersen
duplicate
1:27 PM Ticket #20419 (Match→Align sequences differ in length) closed by Eric Pettersen
duplicate
1:16 PM Ticket #20418 (Crash in isolde::RotaMgr::validate) closed by Eric Pettersen
duplicate: Looks like a script may have being run
12:00 PM Ticket #20417 (Crash in isolde::RotaMgr::validate) closed by Eric Pettersen
duplicate
11:57 AM Ticket #20416 (Crash in isolde::RotaMgr::validate) closed by Eric Pettersen
duplicate
11:50 AM Ticket #20414 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Eric Pettersen
duplicate
11:28 AM Ticket #20412 (Session restore: ItemTable's selectionModel() is None (Parsing ...) closed by Eric Pettersen
duplicate
11:24 AM Ticket #20411 (Crash at exit) closed by Eric Pettersen
can't reproduce
10:43 AM Ticket #20410 (trying to register unknown command: animations) closed by Eric Pettersen
fixed: This daily build was from before the animations commands were declared …
10:38 AM Ticket #20409 (Crash in swap_buffers exposing status line during Mac wakeup) closed by Eric Pettersen
duplicate
10:36 AM Ticket #20408 (glClear: invalid framebuffer operation on statusbar expose) closed by Eric Pettersen
duplicate
10:34 AM Ticket #20407 (Session restore: Unknown class name 'SceneAnimation') closed by Eric Pettersen
limitation: Hi Sebastian, Thanks for reporting this problem. ChimeraX sessions …
10:29 AM Ticket #20406 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Eric Pettersen
duplicate
10:18 AM Ticket #20430 (KVFinder on old MacOS) created by chimerax-bug-report@…
[…]
9:31 AM Ticket #20429 (Crash cleaning up traceback object) created by chimerax-bug-report@…
[…]
8:55 AM Ticket #20428 (ArtiaX: read RELION STAR file: Cannot interpret as a data type) created by chimerax-bug-report@…
[…]
8:34 AM Ticket #19955 (cannot change Animations output file type) reopened by Elaine Meng
The movie-save dialog does not give choices of which format. It just …
8:30 AM Ticket #20427 (Animations default movie resolution should be current display) created by Elaine Meng
Settings does not have a an option to make the current display the …
8:16 AM Ticket #20426 (Animations Settings should not be modal) created by Elaine Meng
If I open Animations Settings I can't do anything else. Tried opening …
3:25 AM Ticket #20425 (Bad model table in mmCIF file) created by akgupta2016@…
[…] rank0001_fvii_pep_binder_413.cif
1:51 AM Ticket #20424 (glBlitFramebuffer: invalid framebuffer operation after Unsupported ...) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.