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Citations (partial list)
Three-dimensional structure of basal body triplet revealed by electron cryo-tomography. Li S, Fernandez JJ et al. EMBO J. 2012 Feb 1;31(3):552-62.
Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle. Cong Y, Schröder GF et al. EMBO J. 2012 Feb 1;31(3):720-30.
Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase. Lau WC, Rubinstein JL. Nature. 2012 Jan 12;481(7380):214-8.
The organisation of Ebola virus reveals a capacity for extensive, modular polyploidy. Beniac DR, Melito PL et al. PLoS One. 2012 Jan 11;7(1):e29608.
Crystal structure of Apis mellifera OBP14, a C-minus odorant-binding protein, and its complexes with odorant molecules. Spinelli S, Lagarde A et al. Insect Biochem Mol Biol. 2012 Jan;42(1):41-50.
The DARC site: a database of aligned ribosomal complexes. Jarasch A, Dziuk P et al. Nucleic Acids Res. 2012 Jan;40(1):D495-500.
How a DNA polymerase clamp loader opens a sliding clamp. Kelch BA, Makino DL et al. Science. 2011 Dec 23;334(6063):1675-80.
Remodeling of actin filaments by ADF/cofilin proteins. Galkin VE, Orlova A et al. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20568-72.
The mechanism of DNA ejection in the Bacillus anthracis spore-binding phage 8a revealed by cryo-electron tomography. Fu X, Walter MH et al. Virology. 2011 Dec 20;421(2):141-8.
Structural conservation of the myoviridae phage tail sheath protein fold. Aksyuk AA, Kurochkina LP et al. Structure. 2011 Dec 7;19(12):1885-94.
Rhodopsin-transducin heteropentamer: Three-dimensional structure and biochemical characterization. Jastrzebska B, Ringler P et al. J Struct Biol. 2011 Dec;176(3):387-94.
A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield. Pejchal R, Doores KJ et al. Science. 2011 Nov 25;334(6059):1097-103.
Analysis of the interaction of the Eg5 Loop5 with the nucleotide site. Harrington TD, Naber N et al. J Theor Biol. 2011 Nov 21;289:107-15.
A mechanism for the evolution of phosphorylation sites. Pearlman SM, Serber Z, Ferrell JE Jr. Cell. 2011 Nov 11;147(4):934-46.
Structure and nucleosome interaction of the yeast NuA4 and Piccolo-NuA4 histone acetyltransferase complexes. Chittuluru JR, Chaban Y et al. Nat Struct Mol Biol. 2011 Nov;18(11):1196–1203.
The evolution of function in strictosidine synthase-like proteins. Hicks MA, Barber AE 2nd et al. Proteins. 2011 Nov;79(11):3082-98.
Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor. Jomaa A, Stewart G et al. RNA. 2011 Nov;17(11):2026-38.
Characterization of PDZ domain-peptide interaction interface based on energetic patterns. Li N, Hou T et al. Proteins. 2011 Nov;79(11):3208-20.
The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation. Umbarger MA, Toro E et al. Mol Cell. 2011 Oct 21;44(2):252-64.
Cryo-electron tomography reveals conserved features of doublet microtubules in flagella. Nicastro D, Fu X et al. Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):E845-53.
Progress in super long loop prediction. Zhao S, Zhu K et al. Proteins. 2011 Oct;79(10):2920-35.
The Staphylococcus aureus pathogenicity island 1 protein gp6 functions as an internal scaffold during capsid size determination. Dearborn AD, Spilman MS et al. J Mol Biol. 2011 Sep 30;412(4):710-22.
A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent powerstroke. Chappie JS, Mears JA et al. Cell. 2011 Sep 30;147(1):209-22.
Structures of the RNA-guided surveillance complex from a bacterial immune system. Wiedenheft B, Lander GC et al. Nature. 2011 Sep 21;477(7365):486-9.
Ligand discovery from a dopamine D(3) receptor homology model and crystal structure. Carlsson J, Coleman RG et al. Nat Chem Biol. 2011 Sep 18;7(11):769-78.
Molecular insights into DNA polymerase deterrents for ribonucleotide insertion. Cavanaugh NA, Beard WA et al. J Biol Chem. 2011 Sep 9;286(36):31650-60.
The architecture of CopA from Archeaoglobus fulgidus studied by cryo-electron microscopy and computational docking. Allen GS, Wu CC et al. Structure. 2011 Sep 7;19(9):1219-32.
How does registry change of dynein's coiled-coil stalk drive binding of dynein to microtubule? Choi J, Park H, Seok C. Biochemistry. 2011 Sep 6;50(35):7629-36.
Brownian dynamics study of the association between the 70S ribosome and elongation factor G. Dƚugosz M, Huber GA et al. Biopolymers. 2011 Sep;95(9):616-27.
Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli. Liu J, Chen CY et al. Virology. 2011 Sep 1;417(2):304-11.
Cooperativity network of Trp-cage miniproteins: probing salt-bridges. Rovó P, Farkas V et al. J Pept Sci. 2011 Sep;17(9):610-9.
HIV Protein Sequence Hotspots for Crosstalk with Host Hub Proteins. Sarmady M, Dampier W, Tozeren A. PLoS One. 2011 Aug 15;6(8):e23293.
The holo-apoptosome: activation of procaspase-9 and interactions with caspase-3. Yuan S, Yu X et al. Structure. 2011 Aug 10;19(8):1084-96.
Structural determinants of limited proteolysis. Kazanov MD, Igarashi Y et al. J Proteome Res. 2011 Aug 5;10(8):3642-51.
Disruption of Bcr-Abl coiled coil oligomerization by design. Dixon AS, Pendley SS et al. J Biol Chem. 2011 Aug 5;286(31):27751-60.
Three-dimensional reconstruction of Heterocapsa circularisquama RNA virus by electron cryo-microscopy. Miller JL, Woodward J et al. J Gen Virol. 2011 Aug;92(Pt 8):1960-70.
The 2.3-angstrom structure of porcine circovirus 2. Khayat R, Brunn N et al. J Virol. 2011 Aug;85(15):7856-62.
Computational investigation of the enzymatic mechanisms of phosphothreonine lyase. Pei Q, Christofferson A et al. Biophys Chem. 2011 Aug;157(1-3):16-23.
The LabelHash Server and tools for substructure-based functional annotation. Moll M, Bryant DH, Kavraki LE. Bioinformatics. 2011 Aug 1;27(15):2161-2.
The effect of electrostatics on factor H function and related pathologies. Kieslich CA, Vazquez H et al. J Mol Graph Model. 2011 Aug;29(8):1047-55.
Second-order nonlinear optical imaging of chiral crystals. Kissick DJ, Wanapun D, Simpson GJ. Annu Rev Anal Chem. 2011 Jul 19;4(1):419-37.
Structural basis for alcohol modulation of a pentameric ligand-gated ion channel. Howard RJ, Murail S et al. Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12149-54.
Direct visualization of myosin-binding protein C bridging myosin and actin filaments in intact muscle. Luther PK, Winkler H et al. Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11423-8.
Structure of Trypanosoma brucei flagellum accounts for its bihelical motion. Koyfman AY, Schmid MF et al. Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11105-8.
SwissDock, a protein-small molecule docking web service based on EADock DSS. Grosdidier A, Zoete V, Michielin O. Nucl Acids Res. 2011 Jul 1;39(suppl 2):W270-7.
Valine 1532 of human BRC repeat 4 plays an important role in the interaction between BRCA2 and RAD51. Ochiai K, Yoshikawa Y et al. FEBS Lett. 2011 Jun 23;585(12):1771-7.
Immuno-electron cryo-microscopy imaging reveals a looped topology of apoB at the surface of human LDL. Liu Y, Atkinson D. J Lipid Res. 2011 Jun;52(6):1111-6.
Structure of the ATP synthase catalytic complex (F1) from Escherichia coli in an autoinhibited conformation. Cingolani G, Duncan TM. Nat Struct Mol Biol. 2011 Jun;18(6):701-7.
Mapping the orientation of nuclear pore proteins in living cells with polarized fluorescence microscopy. Kampmann M, Atkinson CE et al. Nat Struct Mol Biol. 2011 Jun;18(6):643-9.
Selective and potent agonists for estrogen receptor β derived from molecular refinements of salicylaldoximes. Bertini S, De Cupertinis A et al. Eur J Med Chem. 2011 Jun;46(6):2453-62.
Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure. Zhang J, Ma B et al. Structure. 2011 May 11;19(5):633-9.
Tracing protein evolution through ancestral structures of fish galectin. Konno A, Kitagawa A et al. Structure. 2011 May 11;19(5):711-21.
cis,cis-1,3,5-Trihydroxy nonamethylcyclohexasilane: a cyclopolysilane with unusual properties. Stueger H, Albering J et al. Organometallics. 2011 May 9;30(9):2531-8.
Visualising a viral RNA genome poised for release from its receptor complex. Toropova K, Stockley PG, Ranson NA. J Mol Biol. 2011 May 6;408(3):408-19.
Functionally important positions can comprise the majority of a protein's architecture. Tungtur S, Parente DJ, Swint-Kruse L. Proteins. 2011 May;79(5):1589-1608.
Structure of Bombyx mori Densovirus 1, a Silkworm Pathogen. Kaufmann B, El-Far M et al. J Virol. 2011 May;85(10):4691-7.
Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Jore MM, Lundgren M et al. Nat Struct Mol Biol. 2011 May;18(5):529-36.
Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22. Tang J, Lander GC et al. Structure. 2011 Apr 13;19(4):496-502.
Crystal structure of type III glutamine synthetase: surprising reversal of the inter-ring interface. van Rooyen JM, Abratt VR et al. Structure. 2011 Apr 13;19(4):471-83.
Possible role of DMP1 in dentin mineralization. Beniash E, Deshpande AS et al. J Struct Biol. 2011 Apr;174(1):100-6.
The structural basis for MCM2-7 helicase activation by GINS and Cdc45. Costa A, Ilves I et al. Nat Struct Mol Biol. 2011 Apr;18(4):471-7.
Homology-based identification of capsid determinants that protect HIV1 from human TRIM5α restriction. Maillard PV, Zoete V et al. J Biol Chem. 2011 Mar 11;286(10):8128-40.
Non-core Region Modulates Interleukin-11 Signaling Activity. Yanaka S, Sano E et al. J Biol Chem. 2011 Mar 11;286(10):8085-93.
Cortisone-reductase deficiency associated with heterozygous mutations in 11β-hydroxysteroid dehydrogenase type 1. Lawson AJ, Walker EA et al. Proc Natl Acad Sci U S A. 2011 Mar 8;108(10):4111-6.
Three-dimensional model of Salmonella's neeedle complex at subnanometer resolution. Schraidt O, Marlovits TC. Science. 2011 Mar 4;331(6021):1192-5.
Characterization of molecular recognition of STAT3 SH2 domain inhibitors through molecular simulation. Park IH, Li C. J Mol Recognit. 2011 Mar;24(2):254-65.
Docking, synthesis, and in vitro evaluation of antimitotic estrone analogs. Stander A, Joubert F, Joubert A. Chem Biol Drug Des. 2011 Mar;77(3):173-81.
Identification of HLA-G*01:17, a new allele possibly generated by an interloci gene conversion event involving exon 3 of HLA-B. Czarnecki C, Van Domselaar G et al. Hum Immunol. 2011 Mar;72(3):238-40.
Residues of the rotavirus RNA-dependent RNA polymerase template entry tunnel that mediate RNA recognition and genome replication. Ogden KM, Ramanathan HN, Patton JT. J Virol. 2011 Mar;85(5):1958-69.
Protein domain assignment from the recurrence of locally similar structures. Tai CH, Sam V et al. Proteins. 2011 Mar;79(3):853-66.
Detailed mechanism of squalene epoxidase inhibition by terbinafine. Nowosielski M, Hoffmann M et al. J Chem Inf Model. 2011 Feb 28;51(2):455-62.
Structural basis for the subunit assembly of the anaphase-promoting complex. Schreiber A, Stengel F et al. Nature. 2011 Feb 10;470(7333):227-32.
Conformational dynamics of supramolecular protein assemblies. Kim DN, Nguyen CT, Bathe M. J Struct Biol. 2011 Feb;173(2):261-70.
Anesthetic sites and allosteric mechanisms of action on Cys-loop ligand-gated ion channels. Forman SA, Miller KW. Can J Anaesth. 2011 Feb;58(2):191-205.
Structure of the Drosophila apoptosome at 6.9 Å resolution. Yuan S, Yu X et al. Structure. 2011 Jan 12;19(1):128-40.
Molecular rearrangements involved in the capsid shell maturation of bacteriophage T7. Ionel A, Velázquez-Muriel JA et al. J Biol Chem. 2011 Jan 7;286(1):234-42.
Enhancing the contrast of ApoB to locate the surface components in the 3D density map of human LDL. Liu Y, Atkinson D. J Mol Biol. 2011 Jan 7;405(1):274-83.
ModBase, a database of annotated comparative protein structure models, and associated resources. Pieper U, Webb BM et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D465-74.
BriX: a database of protein building blocks for structural analysis, modeling and design. Vanhee P, Verschueren E et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D435-42.
EMDataBank.org: unified data resource for CryoEM. Lawson CL, Baker ML et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D456-64.
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules. Baù D, Sanyal A et al. Nat Struct Mol Biol. 2011 Jan;18(1):107-14.
The Major Genetic Determinants of HIV-1 Control Affect HLA Class I Peptide Presentation. Pereyra F, Jia X et al. Science. 2010 Dec 10;330(6010):1551-7.
Structural changes of envelope proteins during alphavirus fusion. Li L, Jose J et al. Nature. 2010 Dec 2;468(7324):705-8.
Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis. Stark JL, Mercier KA et al. Proteins. 2010 Dec;78(16):3328-40.
Beta-barrel models of soluble amyloid beta oligomers and annular protofibrils. Shafrir Y, Durell SR et al. Proteins. 2010 Dec;78(16):3458-72.
Crystal structure of a virus-encoded putative glycosyltransferase. Xiang Y, Baxa U et al. J Virol. 2010 Dec;84(23):12265-73.
The structural biology of PRRSV. Dokland T. Virus Res. 2010 Dec;154(1-2):86-97.
The LabelHash Algorithm for Substructure Matching. Moll M, Bryant DH, Kavraki LE BMC Bioinformatics. 2010 Nov 11;11(1):555.
Rational, biologically based treatment of EGFR-mutant non-small-cell lung cancer. Pao W, Chmielecki J. Nat Rev Cancer. 2010 Nov;10(11):760-74.
Structural basis for the unfolding of anthrax lethal factor by protective antigen oligomers. Feld GK, Thoren KL et al. Nat Struct Mol Biol. 2010 Nov;17(11):1383-1390.
Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit. Mulder AM, Yoshioka C et al. Science. 2010 Oct 29;330(6004):673-7.
Structural basis for cyclic Py-Im polyamide allosteric inhibition of nuclear receptor binding. Chenoweth DM, Dervan PB. J Am Chem Soc. 2010 Oct 20;132(41):14521-9.
The Ndc80 kinetochore complex forms oligomeric arrays along microtubules. Alushin GM, Ramey VH et al. Nature. 2010 Oct 14;467(7317):805-10.
Direct visualization of secondary structures of F-actin by electron cryomicroscopy. Fujii T, Iwane AH et al. Nature. 2010 Oct 7;467(7316):724-8.
Structure of the cholera toxin secretion channel in its closed state. Reichow SL, Korotkov KV et al. Nat Struct Mol Biol. 2010 Oct;17(10):1226-32.
Family 42 carbohydrate-binding modules display multiple arabinoxylan-binding interfaces presenting different ligand affinities. Ribeiro T, Santos-Silva T et al. Biochim Biophys Acta. 2010 Oct;1804(10):2054-62.
Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400-nm resolution. de Jonge MD, Holzner C et al. Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15676-80.
Inhibition of antibiotic-resistant Staphylococcus aureus by the broad-spectrum dihydrofolate reductase inhibitor RAB1. Bourne CR, Barrow EW et al. Antimicrob Agents Chemother. 2010 Sep;54(9):3825-33.
Interaction of αVβ3 and αVβ6 integrins with human parechovirus 1. Seitsonen J, Susi P et al. J Virol. 2010 Sep;84(17):8509-19.
Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks. Liu H, Jin L et al. Science. 2010 Aug 27;329(5995):1038-43.