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Citations (partial list)

Self-assembling cages from coiled-coil peptide modules. Fletcher JM, Harniman RL et al. Science. 2013 May 3;340(6132):595-9.

A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Canzio D, Liao M et al. Nature. 2013 Apr 18;496(7445):377-81.

The architecture of Tetrahymena telomerase holoenzyme. Jiang J, Miracco EJ et al. Nature. 2013 Apr 11;496(7444):187-92.

Overcoming mutation-based resistance to antiandrogens with rational drug design. Balbas MD, Evans MJ et al. eLife. 2013 Apr 9;2:e00499.

Glutamate receptor desensitization is mediated by changes in quaternary structure of the ligand binding domain. Schauder DM, Kuybeda O et al. Proc Natl Acad Sci USA. 2013 Apr 9;110(15):5921-6.

On the dielectric “constant” of proteins: Smooth dielectric function for macromolecular modeling and its implementation in DelPhi. Li L, Li C et al. J Chem Theory Comput. 2013 Apr 9;9(4):2126-2136.

Mechanism for priming DNA synthesis by yeast DNA polymerase α. Perera RL, Torella R et al. eLife. 2013 Apr 2;2:e00482.

Structure of active dimeric human telomerase. Sauerwald A, Sandin S et al. Nat Struct Mol Biol. 2013 Apr;20(4):454-60.

Novel biopanning strategy to identify epitopes associated with vaccine protection. Bachler BC, Humbert M et al. J Virol. 2013 Apr;87(8):4403-16.

The structural basis of ZMPSTE24-dependent laminopathies. Quigley A, Dong YY et al. Science. 2013 Mar 29;339(6127):1604-7.

A syringe-like injection mechanism in Photorhabdus luminescens toxins. Gatsogiannis C, Lang AE et al. Nature. 2013 Mar 28;495(7442):520-3.

Structural visualization of key steps in human transcription initiation. He Y, Fang J et al. Nature. 2013 Mar 28;495(7442):481-6.

Molecular architecture of the chick vestibular hair bundle. Shin JB, Krey JF et al. Nat Neurosci. 2013 Mar;16(3):365-74.

ViewMotions Rainbow: A new method to illustrate molecular motions in proteins. Cockrell GM, Kantrowitz ER. J Mol Graph Model. 2013 Mar;40C:48-53.

Structure of glutaraldehyde cross-linked ryanodine receptor. Strauss JD, Wagenknecht T. J Struct Biol. 2013 Mar;181(3):300-6.

Structural features of cholesteryl ester transfer protein: A molecular dynamics simulation study. Lei D, Zhang X et al. Proteins. 2013 Mar;81(3):415-25.

Integrating art and science in undergraduate education. Gurnon D, Voss-Andreae J, Stanley J. PLoS Biol. 2013 Feb 26;11(2):e1001491.

The bacteriophage T7 virion undergoes extensive structural remodeling during infection. Hu B, Margolin W et al. Science. 2013 Feb 1;339(6119):576-9.

HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation. Filbin ME, Vollmar BS et al. Nat Struct Mol Biol. 2013 Feb;20(2):150-8.

The architecture of human general transcription factor TFIID core complex. Bieniossek C, Papai G et al. Nature. 2013 Jan 31;493(7434):699-702.

A radically configurable six-state compound. Barnes JC, Fahrenbach AC et al. Science. 2013 Jan 25;339(6118):429-33.

Molecular structures of trimeric HIV-1 Env in complex with small antibody derivatives. Meyerson JR, Tran EE et al. Proc Natl Acad Sci USA. 2013 Jan 8;110(2):513-8.

Structural characterization of a eukaryotic chaperone — the ribosome-associated complex. Leidig C, Bange G et al. Nat Struct Mol Biol. 2013 Jan;20(1):23-8.

Promiscuous behaviour of archaeal ribosomal proteins: Implications for eukaryotic ribosome evolution. Armache JP, Anger AM et al. Nucleic Acids Res. 2013 Jan 1;41(2):1284-1293.

SwissSidechain: a molecular and structural database of non-natural sidechains. Gfeller D, Michielin O, Zoete V. Nucleic Acids Res. 2013 Jan 1;41(D1):D327-32.

The two sides of complement C3d: Evolution of electrostatics in a link between innate and adaptive immunity. Kieslich CA, Morikis D. PLoS Comput Biol. 2012 Dec 27;8(12): e1002840.

The structure of native influenza virion ribonucleoproteins. Arranz R, Coloma R et al. Science. 2012 Dec 21;338(6114):1634-7.

Organization of the influenza virus replication machinery. Moeller A, Kirchdoerfer RN et al. Science. 2012 Dec 21;338(6114):1631-4.

Structure-guided discovery of phenyl-diketo acids as potent inhibitors of M. tuberculosis malate synthase. Krieger IV, Freundlich JS et al. Chem Biol. 2012 Dec 21;19(12):1556-67.

Crystal structure and location of gp131 in the bacteriophage phiKZ virion. Sycheva LV, Shneider MM et al. Virology. 2012 Dec 20;434(2):257-64.

A bipolar spindle of antiparallel ParM filaments drives bacterial plasmid segregation. Gayathri P, Fujii T et al. Science. 2012 Dec 7;338(6112):1334-7.

A global comparison of the human and T. brucei degradomes gives insights about possible parasite drug targets. Mashiyama ST, Koupparis K et al. PLoS Negl Trop Dis. 2012 Dec 6;6(12): e1942.

Protein secondary structure determination by constrained single-particle cryo-electron tomography. Bartesaghi A, Lecumberry F et al. Structure. 2012 Dec 5;20(12):2003-13.

MP2 energy and density for large molecular systems with internal error control using the Divide-Expand-Consolidate scheme. Kristensen K, Høyvik IM et al. Phys Chem Chem Phys. 2012 Dec 5;14(45):15706-14.

DOLORS: Versatile strategy for internal labeling and domain localization in electron microscopy. Lau PW, Potter CS et al. Structure. 2012 Dec 5;20(12):1995-2002.

Structure of the vacuolar-type ATPase from Saccharomyces cerevisiae at 11-Å resolution. Benlekbir S, Bueler SA, Rubinstein JL. Nat Struct Mol Biol. 2012 Dec;19(12):1356-62.

Cryo-EM structures of Arx1 and maturation factors Rei1 and Jjj1 bound to the 60S ribosomal subunit. Greber BJ, Boehringer D et al. Nat Struct Mol Biol. 2012 Nov 11;19(12):1228-33.

Coagulation factor X activates innate immunity to human species C adenovirus. Doronin K, Flatt JW et al. Science. 2012 Nov 9;338(6108):795-8.

Structural variation and uniformity among tetraloop-receptor interactions and other loop-helix interactions in RNA crystal structures. Wu L, Chai D et al. PLoS One. 2012 Nov 9;7(11):e49225.

A virus-like particle that elicits cross-reactive antibodies to the conserved stem of influenza virus hemagglutinin. Schneemann A, Speir JA et al. J Virol. 2012 Nov;86(21):11686-97.

Multimodal microtubule binding by the Ndc80 kinetochore complex. Alushin GM, Musinipally V et al. Nat Struct Mol Biol. 2012 Nov;19(11):1161-7.

Molecular architecture of human polycomb repressive complex 2. Ciferri C, Lander GC et al. eLife. 2012 Oct 30;1:e00005.

Multimolecule test-tube simulations of protein unfolding and aggregation. McCully ME, Beck DA, Daggett V. Proc Natl Acad Sci USA. 2012 Oct 30;109(44):17851-6.

Fiber diffraction data indicate a hollow core for the Alzheimer's aβ 3-fold symmetric fibril. McDonald M, Box H et al. J Mol Biol. 2012 Oct 26;423(3):454-61.

ATP-driven remodeling of the linker domain in the dynein motor. Roberts AJ, Malkova B et al. Structure. 2012 Oct 10;20(10):1670-80.

Neuromodulation by extracellular ATP and P2X receptors in the CNS. Khakh BS, North RA. Neuron. 2012 Oct 4;76(1):51-69.

Structural basis for the sheddase function of human meprin β metalloproteinase at the plasma membrane. Arolas JL, Broder C et al. Proc Natl Acad Sci USA. 2012 Oct 2;109(40):16131-6.

Computer-aided antibody design. Kuroda D, Shirai H et al. Protein Eng Des Sel. 2012 Oct;25(10):507-22.

Structural insights into catalysis by βC-S lyase from Streptococcus anginosus. Kezuka Y, Yoshida Y, Nonaka T. Proteins. 2012 Oct;80(10):2447-58.

Parallel molecular evolution in an herbivore community. Zhen Y, Aardema ML et al. Science. 2012 Sep 28;337(6102):1634-7.

Cross-neutralization of influenza A viruses mediated by a single antibody loop. Ekiert DC, Kashyap AK et al. Nature. 2012 Sep 27;489(7417):526-32.

Structural basis for microtubule binding and release by dynein. Redwine WB, Hernández-López R et al. Science. 2012 Sep 21;337(6101):1532-6.

Mutational analysis of residues involved in nucleotide and divalent cation stabilization in the rotavirus RNA-dependent RNA polymerase catalytic pocket. Ogden KM, Ramanathan HN, Patton JT. Virology. 2012 Sep 15;431(1-2):12-20.

Highly conserved protective epitopes on influenza B viruses. Dreyfus C, Laursen NS et al. Science. 2012 Sep 14;337(6100):1343-8.

Near-atomic resolution structural model of the yeast 26S proteasome. Beck F, Unverdorben P et al. Proc Natl Acad Sci USA. 2012 Sep 11;109(37):14870-5.

UCSF Chimera, MODELLER, and IMP: An integrated modeling system. Yang Z, Lasker K et al. J Struct Biol. 2012 Sep;179(3):269-78.

Comparison of Segger and other methods for segmentation and rigid-body docking of molecular components in cryo-EM density maps. Pintilie G, Chiu W. Biopolymers. 2012 Sep;97(9):742-60.

Room-temperature ferroelectricity in supramolecular networks of charge-transfer complexes. Tayi AS, Shveyd AK et al. Nature. 2012 Aug 23;488(7412):485-9.

Cartwheel architecture of Trichonympha basal body. Guichard P, Desfosses A et al. Science. 2012 Aug 3;337(6094):553.

Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations. Pugh TJ, Weeraratne SD et al. Nature. 2012 Aug 2;488(7409):106-10.

The ERBB network: at last, cancer therapy meets systems biology. Yarden Y, Pines G. Nat Rev Cancer. 2012 Aug;12(8):553-63.

SALIGN: A web server for alignment of multiple protein sequences and structures. Braberg H, Webb BM et al. Bioinformatics. 2012 Aug 1;28(15):2072-3.

Interactions with DNA: Into the minor groove. Neidle S. Nat Chem. 2012 Aug;4(8):594-5.

Structure of the immature retroviral capsid at 8 Å resolution by cryo-electron microscopy. Bharat TA, Davey NE et al. Nature. 2012 Jul 19;487(7407):385-9.

Molecular architecture and assembly principles of Vibrio cholerae biofilms. Berk V, Fong JC et al. Science. 2012 Jul 13;337(6091):236-9.

Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. Tran EE, Borgnia MJ et al. PLoS Pathog. 2012 Jul 12;8(7):e1002797.

Druggability Assessment of Allosteric Proteins by Dynamics Simulations in the Presence of Probe Molecules. Bakan A, Nevins N et al. J Chem Theory Comput. 2012 Jul 10;8(7):2435-2447.

Expanding molecular modeling and design tools to non-natural sidechains. Gfeller D, Michielin O, Zoete V. J Comput Chem. 2012 Jul 5;33(18):1525-35.

A Bayesian adaptive basis algorithm for single particle reconstruction. Kucukelbir A, Sigworth FJ, Tagare HD. J Struct Biol. 2012 Jul;179(1):56-67.

Genomics-aided structure prediction. Suƚkowska JI, Morcos F et al. Proc Natl Acad Sci USA. 2012 Jun 26;109(26):10340-5.

A movie of RNA polymerase II transcription. Cheung ACM, Cramer P. Cell. 2012 Jun 22;149(7):1431-7.

The structures of COPI-coated vesicles reveal alternate coatomer conformations and interactions. Faini M, Prinz S et al. Science. 2012 Jun 15;336(6087):1451-4.

An amino acid packing code for α-helical structure and protein design. Joo H, Chavan AG et al. J Mol Biol. 2012 Jun 8;419(3-4):234-54.

Molecular architecture of chemoreceptor arrays revealed by cryoelectron tomography of Escherichia coli minicells. Liu J, Hu B et al. Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):E1481-8.

Relevance of capsid structure in the buckling and maturation of spherical viruses. Aznar M, Luque A, Reguera D. Phys Biol. 2012 Jun;9(3):036003.

Epitope insertion at the N-terminal molecular switch of the rabbit hemorrhagic disease virus T=3 capsid protein leads to larger T=4 capsids. Luque D, González JM et al. J Virol. 2012 Jun;86(12):6470-80.

Structure and size determination of bacteriophage P2 and P4 procapsids: Function of size responsiveness mutations. Dearborn AD, Laurinmaki P et al. J Struct Biol. 2012 Jun;178(3):215-24.

The complex of tmRNA-SmpB and EF-G on translocating ribosomes. Ramrath DJ, Yamamoto H et al. Nature. 2012 May 24;485(7399):526-9.

Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen. Hu L, Crawford SE et al. Nature. 2012 May 10;485(7397):256-9.

Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution. Greber BJ, Boehringer D et al. J Mol Biol. 2012 May 4;418(3-4):145-60.

Structural characterization of closely related O-antigen lipopolysaccharide (LPS) chain length regulators. Kalynych S, Yao D et al. J Biol Chem. 2012 May 4;287(19):15696-705.

Structure and dynamics of calmodulin (CaM) bound to nitric oxide synthase peptides: Effects of a phosphomimetic CaM mutation. Piazza M, Futrega K et al. Biochemistry. 2012 May 1;51(17):3651-61.

The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3' end. Melero R, Buchwald G et al. Nat Struct Mol Biol. 2012 May;19(5):498-505.

Cryo-EM structure of a transcribing cypovirus. Yang C, Ji G et al. Proc Natl Acad Sci USA. 2012 Apr 17;109(16):6118-23.

EBs recognize a nucleotide-dependent structural cap at growing microtubule ends. Maurer SP, Fourniol FJ et al. Cell. 2012 Apr 13;149(2):371-82.

Structural insights into initial and intermediate steps of the ribosome-recycling process. Yokoyama T, Shaikh TR et al. EMBO J. 2012 Apr 4;31(7):1836-46.

Fabs enable single particle cryoEM studies of small proteins. Wu S, Avila-Sakar A et al. Structure. 2012 Apr 4;20(4):582-92.

The molecular architecture of human Dicer. Lau PW, Guiley KZ et al. Nat Struct Mol Biol. 2012 Apr;19(4):436-40.

Topological analysis and interactive visualization of biological networks and protein structures. Doncheva NT, Assenov Y et al. Nat Protoc. 2012 Apr;7(4):670-85.

Structural basis of transfer between lipoproteins by cholesteryl ester transfer protein. Zhang L, Yan F et al. Nat Chem Biol. 2012 Apr;8(4):342-9.

A structural model for the generation of continuous curvature on the surface of a retroviral capsid. Bailey GD, Hyun JK et al. J Mol Biol. 2012 Mar 30;417(3):212-23.

Constraint shapes convergence in tetrodotoxin-resistant sodium channels of snakes. Feldman CR, Brodie ED Jr et al. Proc Natl Acad Sci USA. 2012 Mar 20;109(12):4556-61.

Allosteric antibody inhibition of human hepsin protease. Koschubs T, Dengl S et al. Biochem J. 2012 Mar 15;442(3):483-94.

Type VI secretion requires a dynamic contractile phage tail-like structure. Basler M, Pilhofer M et al. Nature. 2012 Mar 8;483(7388):182-6.

Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking. Baker MR, Rees I et al. Structure. 2012 Mar 7;20(3):450-63.

Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis. Raychaudhuri S, Sandor C et al. Nat Genet. 2012 Mar;44(3):291-6.

Peripheral Ligand-binding Site in Cytochrome P450 3A4 Located with Fluorescence Resonance Energy Transfer (FRET). Davydov DR, Rumfeldt JA et al. J Biol Chem. 2012 Feb 24;287(9):6797-809.

Structure-function mapping of a heptameric module in the nuclear pore complex. Fernandez-Martinez J, Phillips J et al. J Cell Biol. 2012 Feb 20;196(4):419-34.

Complete subunit architecture of the proteasome regulatory particle. Lander GC, Estrin E et al. Nature. 2012 Feb 9;482(7384):186-91.

Subunit architecture of general transcription factor TFIIH. Gibbons BJ, Brignole EJ et al. Proc Natl Acad Sci USA. 2012 Feb 7;109(6):1949-54.