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UCSF ChimeraX Citations

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Selected Citations

Columnar structure of human telomeric chromatin. Soman A, Wong SY et al. Nature. 2022 Sep 29;609(7929):1048-1055.

Mechanistic understanding of human SLFN11. Metzner FJ, Wenzl SJ et al. Nat Commun. 2022 Sep 17;13(1):5464.

Organizing structural principles of the IL-17 ligand-receptor axis. Wilson SC, Caveney NA et al. Nature. 2022 Sep 15;609(7927):622-629.

Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration. Wald J, Fahrenkamp D et al. Nature. 2022 Sep 15;609(7927):630-639.

Membranes under the magnetic lens: A dive into the diverse world of membrane protein structures using cryo-EM. Piper SJ, Johnson RM et al. Chem Rev. 2022 Sep 14;122(17):13989-14017.

R-loop formation and conformational activation mechanisms of Cas9. Pacesa M, Loeff L et al. Nature. 2022 Sep 1;609(7925):191-196.

Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination. Arvindekar S, Jackman MJ et al. Protein Sci. 2022 Sep;31(9):e4387.

Structural basis for shape-selective recognition and aminoacylation of a D-armless human mitochondrial tRNA. Kuhle B, Hirschi M et al. Nat Commun. 2022 Aug 30;13(1):5100.

Structural plasticity enables evolution and innovation of RuBisCO assemblies. Liu AK, Pereira JH et al. Sci Adv. 2022 Aug 26;8(34):eadc9440.

Structures of the human CST-Polα-primase complex bound to telomere templates. He Q, Lin X et al. Nature. 2022 Aug 25;608(7924):826-832.

Cryo-EM structure of an active bacterial TIR-STING filament complex. Morehouse BR, Yip MCJ et al. Nature. 2022 Aug 25;608(7924):803-807.

Structures of the nitrogenase complex prepared under catalytic turnover conditions. Rutledge HL, Cook BD et al. Science. 2022 Aug 19;377(6608):865-869.

Cryo-EM structure of the human IgM B cell receptor. Su Q, Chen M et al. Science. 2022 Aug 19;377(6608):875-880.

ACE2-binding exposes the SARS-CoV-2 fusion peptide to broadly neutralizing coronavirus antibodies. Low JS, Jerak J et al. Science. 2022 Aug 12;377(6607):735-742.

Cryo-EM structures of human hepatitis B and woodchuck hepatitis virus small spherical subviral particles. Liu H, Hong X et al. Sci Adv. 2022 Aug 5;8(31):eabo4184.

Akkermansia muciniphila phospholipid induces homeostatic immune responses. Bae M, Cassilly CD et al. Nature. 2022 Aug 4;608(7921):168-173.

2.2 Å cryo-EM tetra-protofilament structure of the hamster prion 108-144 fibril reveals an ordered water channel in the center. Chen EH, Kao HW et al. J Am Chem Soc. 2022 Aug 3;144(30):13888-13894.

Structural motifs for subtype-specific pH-sensitive gating of vertebrate otopetrin proton channels. Teng B, Kaplan JP et al. eLife. 2022 Aug 3;11:e77946.

Chikungunya virus assembly and budding visualized in situ using cryogenic electron tomography. Chmielewski D, Schmid MF et al. Nat Microbiol. 2022 Aug;7(8):1270-1279.

In situ architecture of the ciliary base reveals the stepwise assembly of intraflagellar transport trains. van den Hoek H, Klena N et al. Science. 2022 Jul 29;377(6605):543-548.

The cryo-EM structures of two amphibian antimicrobial cross-β amyloid fibrils. Bücker R, Seuring C et al. Nat Commun. 2022 Jul 27;13(1):4356.

Structure of the nutrient-sensing hub GATOR2. Valenstein ML, Rogala KB et al. Nature. 2022 Jul 21;607(7919):610–616.

Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM. Suzuki S, Iida M et al. Commun Biol. 2022 Jul 15;5(1):707.

AlphaFold2 and CryoEM: Revisiting CryoEM modeling in near-atomic resolution density maps. Hryc CF, Baker ML. iScience. 2022 Jul 15;25(7):104496.

Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Su S, Wang J et al. Nature. 2022 Jul 14;607(7918):399-406.

Mpe1 senses the binding of pre-mRNA and controls 3' end processing by CPF. Rodríguez-Molina JB, O'Reilly FJ et al. Mol Cell. 2022 Jul 7;82(13):2490-2504.e12.

eIF5B and eIF1A reorient initiator tRNA to allow ribosomal subunit joining. Lapointe CP, Grosely R et al. Nature. 2022 Jul 7;607(7917):185-190.

Structures of the T cell potassium channel Kv1.3 with immunoglobulin modulators. Selvakumar P, Fernández-Mariño AI et al. Nat Commun. 2022 Jul 4;13(1):3854.

Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains. Case JB, Mackin S et al. Nat Commun. 2022 Jul 2;13(1):3824.

Mechanism of replication origin melting nucleated by CMG helicase assembly. Lewis JS, Gross MH et al. Nature. 2022 Jun 30;606(7916):1007-1014.

Structural insights into the HBV receptor and bile acid transporter NTCP. Park JH, Iwamoto M et al. Nature. 2022 Jun 30;606(7916):1027-1031.

Filamentation modulates allosteric regulation of PRPS. Hu HH, Lu GM et al. eLife. 2022 Jun 23;11:e79552.

Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase. Fraser A, Sokolova ML et al. Nat Commun. 2022 Jun 20;13(1):3526.

Structural basis of nucleosome retention during transcription elongation. Filipovski M, Soffers JHM et al. Science. 2022 Jun 17;376(6599):1313-1316.

Structure of the rabies virus glycoprotein trimer bound to a prefusion-specific neutralizing antibody. Callaway HM, Zyla D et al. Sci Adv. 2022 Jun 17;8(24):eabp9151.

Mechanism of mitoribosomal small subunit biogenesis and preinitiation. Itoh Y, Khawaja A et al. Nature. 2022 Jun 16;606(7914):603-608.

Structural remodeling of ribosome associated Hsp40-Hsp70 chaperones during co-translational folding. Chen Y, Tsai B et al. Nat Commun. 2022 Jun 14;13(1):3410.

Structure of cytoplasmic ring of nuclear pore complex by integrative cryo-EM and AlphaFold. Fontana P, Dong Y et al. Science. 2022 Jun 10;376(6598):eabm9326.

AI-based structure prediction empowers integrative structural analysis of human nuclear pores. Mosalaganti S, Obarska-Kosinska A et al. Science. 2022 Jun 10;376(6598):eabm9506.

A hold-and-feed mechanism drives directional DNA loop extrusion by condensin. Shaltiel IA, Datta S et al. Science. 2022 Jun 3;376(6597):1087-1094.

Structure of the human inner kinetochore bound to a centromeric CENP-A nucleosome. Yatskevich S, Muir KW et al. Science. 2022 May 20;376(6595):844-852.

Structural rearrangements allow nucleic acid discrimination by type I-D Cascade. Schwartz EA, McBride TM et al. Nat Commun. 2022 May 20;13(1):2829.

Cryo-EM structure of human glucose transporter GLUT4. Yuan Y, Kong F et al. Nat Commun. 2022 May 13;13(1):2671.

Structural mapping of antibody landscapes to human betacoronavirus spike proteins. Bangaru S, Antanasijevic A et al. Sci Adv. 2022 May 6;8(18):eabn2911.

The tethered peptide activation mechanism of adhesion GPCRs. Barros-Álvarez X, Nwokonko RM et al. Nature. 2022 Apr 28;604(7907):757–762.

Structural basis for the tethered peptide activation of adhesion GPCRs. Ping YQ, Xiao P et al. Nature. 2022 Apr 28;604(7907):763–770.

Structure of ATP synthase under strain during catalysis. Guo H, Rubinstein JL. Nat Commun. 2022 Apr 25;13(1):2232.

Mechanism of RNA polymerase I selection by transcription factor UAF. Baudin F, Murciano B et al. Sci Adv. 2022 Apr 22;8(16):eabn5725.

Structure of active human telomerase with telomere shelterin protein TPP1. Liu B, He Y et al. Nature. 2022 Apr 21;604(7906):578–583.

Structural basis of lipopolysaccharide maturation by the O-antigen ligase. Ashraf KU, Nygaard R et al. Nature. 2022 Apr 14;604(7905):371–376.

Structure of a Janus kinase cytokine receptor complex reveals the basis for dimeric activation. Glassman CR, Tsutsumi N et al. Science. 2022 Apr 8;376(6589):163-169.

Differential assembly diversifies GABAA receptor structures and signalling. Sente A, Desai R et al. Nature. 2022 Apr 7;604(7904):190–194.

Vaccination with SARS-CoV-2 spike protein lacking glycan shields elicits enhanced protective responses in animal models. Huang HY, Liao HY et al. Sci Transl Med. 2022 Apr 6;14(639):eabm0899.

Architecture and antigenicity of the Nipah virus attachment glycoprotein. Wang Z, Amaya M et al. Science. 2022 Mar 25;375(6587):1373-1378.

Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity. Meng B, Abdullahi A et al. Nature. 2022 Mar 24;603(7902):706–714.

Recovery of particulate methane monooxygenase structure and activity in a lipid bilayer. Koo CW, Tucci FJ et al. Science. 2022 Mar 18;375(6586):1287-1291.

Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria. Saito K, Kratzat H et al. Nature. 2022 Mar 17;603(7901):503-508.

FliL ring enhances the function of periplasmic flagella. Guo S, Xu H et al. Proc Natl Acad Sci USA. 2022 Mar 15;119(11):e2117245119.

Structural basis of human telomerase recruitment by TPP1-POT1. Sekne Z, Ghanim GE et al. Science. 2022 Mar 11;375(6585):1173-1176.

Structural basis for mismatch surveillance by CRISPR-Cas9. Bravo JPK, Liu MS et al. Nature. 2022 Mar 10;603(7900):343-347.

Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody. Yin W, Xu Y et al. Science. 2022 Mar 4;375(6584):1048-1053.

Structural architecture of the human NALCN channelosome. Kschonsak M, Chua HC et al. Nature. 2022 Mar 3;603(7899):180-186.

Structure of a thylakoid-anchored contractile injection system in multicellular cyanobacteria. Weiss GL, Eisenstein F et al. Nat Microbiol. 2022 Mar;7(3):386-396.

Structural basis of SARS-CoV-2 Omicron immune evasion and receptor engagement. McCallum M, Czudnochowski N et al. Science. 2022 Feb 25;375(6583):864-868.

Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin. Wang Z, Grange M et al. Science. 2022 Feb 18;375(6582):eabn1934.

2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem. Qian P, Gardiner AT et al. Sci Adv. 2022 Feb 18;8(7):eabk3139.

Activation mechanism of PINK1. Gan ZY, Callegari S et al. Nature. 2022 Feb 10;602(7896):328–335.

SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses. Dejnirattisai W, Huo J et al. Cell. 2022 Feb 3;185(3):467-484.e15.

Drug discovery in the era of cryo-electron microscopy. Robertson MJ, Meyerowitz JG, Skiniotis G. Trends Biochem Sci. 2022 Feb;47(2):124-135.

Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom. Krupovic M, Makarova KS, Koonin EV. Proc Natl Acad Sci USA. 2022 Feb 1;119(5):e2120620119.

Antibody-mediated broad sarbecovirus neutralization through ACE2 molecular mimicry. Park YJ, De Marco A et al. Science. 2022 Jan 28;375(6579):449-454.

Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare. Shen L, Tang K et al. Nature. 2022 Jan 27;601(7894):649–654.

Multiple conformations of trimeric spikes visualized on a non-enveloped virus. Zhang Y, Cui Y et al. Nat Commun. 2022 Jan 27;13(1):550.

Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis. Cui Z, Li X et al. Nat Commun. 2022 Jan 21;13(1):432.

Structure of Hsp90-p23-GR reveals the Hsp90 client-remodelling mechanism. Noddings CM, Wang RY et al. Nature. 2022 Jan 20;601(7893):465-469.

Cryo-EM structures of amyloid-β 42 filaments from human brains. Yang Y, Arseni D et al. Science. 2022 Jan 14;375(6577):167-172.

Single particle cryo-EM structure of the outer hair cell motor protein prestin. Butan C, Song Q et al. Nat Commun. 2022 Jan 12;13(1):290.

Structural basis of branch site recognition by the human spliceosome. Tholen J, Razew M et al. Science. 2022 Jan 7;375(6576):50-57.

Structure of pathological TDP-43 filaments from ALS with FTLD. Arseni D, Hasegawa M et al. Nature. 2022 Jan 6;601(7891):139–143.

Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants. McCallum M, Walls AC et al. Science. 2021 Dec 24;374(6575):1621-1626.

A conserved mechanism for regulating replisome disassembly in eukaryotes. Jenkyn-Bedford M, Jones ML et al. Nature. 2021 Dec 23;600(7890):743–747.

A unified evolutionary origin for the ubiquitous protein transporters SecY and YidC. Lewis AJO, Hegde RS. BMC Biol. 2021 Dec 15;19(1):266.

Nuclear pores dilate and constrict in cellulo. Zimmerli CE, Allegretti M et al. Science. 2021 Dec 10;374(6573):eabd9776.

How to build a ribosome from RNA fragments in Chlamydomonas mitochondria. Waltz F, Salinas-Giegé T et al. Nat Commun. 2021 Dec 9;12(1):7176.

Structural insights into Ubr1-mediated N-degron polyubiquitination. Pan M, Zheng Q et al. Nature. 2021 Dec 9;600(7888):334–338.

Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape. Mast FD, Fridy PC et al. eLife. 2021 Dec 7;10:e73027.

Mechanism for the activation of the anaplastic lymphoma kinase receptor. Reshetnyak AV, Rossi P et al. Nature. 2021 Dec 2;600(7887):153–157.

Structure and desensitization of AMPA receptor complexes with type II TARP γ5 and GSG1L. Klykov O, Gangwar SP et al. Mol Cell. 2021 Dec 2;81(23):4771-4783.e7.

Nanometer-resolution in situ structure of the SARS-CoV-2 postfusion spike protein. Tai L, Zhu G et al. Proc Natl Acad Sci USA. 2021 Nov 30;118(48):e2112703118.

Molecular architecture of black widow spider neurotoxins. Chen M, Blum D et al. Nat Commun. 2021 Nov 29;12(1):6956.

Kinesin-binding protein remodels the kinesin motor to prevent microtubule binding. Solon AL, Tan Z et al. Sci Adv. 2021 Nov 19;7(47):eabj9812.

Structural mechanisms for gating and ion selectivity of the human polyamine transporter ATP13A2. Tillinghast J, Drury S et al. Mol Cell. 2021 Nov 18;81(22):4650-4662.e4.

Target site selection and remodelling by type V CRISPR-transposon systems. Querques I, Schmitz M et al. Nature. 2021 Nov 18;599(7885):497-502.

Architecture and assembly mechanism of native glycine receptors. Zhu H, Gouaux E. Nature. 2021 Nov 18;599(7885):513-517.

The structure of neurofibromin isoform 2 reveals different functional states. Naschberger A, Baradaran R et al. Nature. 2021 Nov 11;599(7884):315-319.

Cryo-EM structures of PI3Kα reveal conformational changes during inhibition and activation. Liu X, Yang S et al. Proc Natl Acad Sci USA. 2021 Nov 9;118(45):e2109327118.

Structural features of nucleosomes in interphase and metaphase chromosomes. Arimura Y, Shih RM et al. Mol Cell. 2021 Nov 4;81(21):4377-4397.e12.

Distinct allosteric mechanisms of first-generation MsbA inhibitors. Thélot FA, Zhang W et al. Science. 2021 Oct 29;374(6567):580-585.

Structure of Venezuelan equine encephalitis virus in complex with the LDLRAD3 receptor. Basore K, Ma H et al. Nature. 2021 Oct 28;598(7882):672–676.

Structures of full-length glycoprotein hormone receptor signalling complexes. Duan J, Xu P et al. Nature. 2021 Oct 28;598(7882):688–692.


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