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#20382 new defect

ChimeraX bug report submission

Reported by:	csun@…	Owned by:
Priority:	normal	Milestone:
Component:	Unassigned	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:
Project:

Description

The following bug report has been submitted:
Platform:        macOS-26.2-arm64-arm-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/ribosomecolorbyCCmax.cxs
> format session

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  
Opened L37_ts_006.mrc as #2.1.1, grid size 472,644,214, pixel 20, shown at
step 2, values float32  
Opened L37_ts_006_invert as #2.1.2, grid size 472,644,214, pixel 20, shown at
step 1, values float32  
Opened template_emd_70084_20.0A.mrc as #2.2.1.1.1, grid size 21,21,21, pixel
20, shown at level 0.0324, step 1, values float32  
Log from Thu May 21 23:54:56 2026UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006.mrc

Opened L37_ts_006.mrc as #1, grid size 472,644,214, pixel 20, shown at level
0.0289, step 2, values float32  

> artiax start

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  

> artiax add tomo #1

Opened L37_ts_006.mrc as #2.1.1, grid size 472,644,214, pixel 20, shown at
level 0.0289, step 2, values float32  

> artiax clip off

> artiax tomo #2.1.1 sliceDirection 0,0,1

> artiax view xy

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_20.00Apx_particles.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_20.00Apx_particles.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_20.00Apx_particles.star with 500 particles.  
Array Excerpt (first 5 elements):  
[-0.00228882 -0.00260735 -0.00239944 -0.00246239 -0.00243187]  
  
Basic Information:  
Shape: (214, 644, 472)  
Data type: float32  
Size (number of elements): 65049152  
Memory (bytes): 260196608  
Max value: 0.2301025390625  
Min value: -0.1949462890625  
Max value: 0.2301025390625  
Min value: -0.1949462890625  
Midpoint: 0.017578125  
Inverted array (first 5 elements):  
[0.03744507 0.0377636 0.03755569 0.03761864 0.03758812]  
Opened L37_ts_006_invert as #2.1.2, grid size 472,644,214, pixel 20, shown at
level 0.0599, step 1, values float32  

> artiax clip off

> artiax tomo #2.1.2 slice 100

> artiax tomo #2.1.2 slice 113

> show #!2.1.1 models

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006.mrc

Opened L37_ts_006.mrc as #1, grid size 472,644,214, pixel 20, shown at level
0.0289, step 2, values float32  

> artiax add tomo #1

Opened L37_ts_006.mrc as #2.1.1, grid size 472,644,214, pixel 20, shown at
level 0.0289, step 2, values float32  

> artiax clip off

> artiax tomo #2.1.1 sliceDirection 0,0,1

> artiax view xy

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_20.00Apx_particles.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_20.00Apx_particles.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_20.00Apx_particles.star with 500 particles.  
Array Excerpt (first 5 elements):  
[-0.00228882 -0.00260735 -0.00239944 -0.00246239 -0.00243187]  
  
Basic Information:  
Shape: (214, 644, 472)  
Data type: float32  
Size (number of elements): 65049152  
Memory (bytes): 260196608  
Max value: 0.2301025390625  
Min value: -0.1949462890625  
Max value: 0.2301025390625  
Min value: -0.1949462890625  
Midpoint: 0.017578125  
Inverted array (first 5 elements):  
[0.03744507 0.0377636 0.03755569 0.03761864 0.03758812]  
Opened L37_ts_006_invert as #2.1.2, grid size 472,644,214, pixel 20, shown at
level 0.0599, step 1, values float32  

> artiax clip off

> artiax tomo #2.1.2 slice 120

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_invert.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_invert.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_invert.star with 500 particles.  

> artiax tomo #2.1.2 slice 62

> artiax tomo #2.1.2 slice 115

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_noCTF.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_noCTF.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_noCTF.star with 500 particles.  

> artiax tomo #2.1.2 slice 64

> artiax tomo #2.1.2 slice 104

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_s05.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_s05.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_s05.star with 20 particles.  

> artiax tomo #2.1.2 slice 70

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_s04.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_s04.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_s04.star with 100 particles.  

> artiax tomo #2.1.2 slice 89

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_f.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_f.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_f.star with 100 particles.  

> artiax tomo #2.1.2 slice 93

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_500.star

Summary of feedback from opening
/Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/L37_ts_006_500.star  
---  
notes | Information is missing, opening input window  
Using sizes: X: 472, Y: 644, Z: 214  
Using pixelsize: 20.0  
  

> artiax clip off

Opened Particle list L37_ts_006_500.star with 500 particles.  

> artiax tomo #2.1.2 slice 96

> open
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/template_emd_70084_20.0A.mrc

Opened template_emd_70084_20.0A.mrc as #1, grid size 21,21,21, pixel 20, shown
at level 0.0469, step 1, values float32  

> artiax attach #1 toParticleList #2.2.1

Opened template_emd_70084_20.0A.mrc as #2.2.1.1.1, grid size 21,21,21, pixel
20, shown at level 0.0469, step 1, values float32  

> volume #2.2.1.1.1 capFaces false

> artiax particles #2.2.1 surfaceLevel 0.03235076

> hide #!2.2.1 models

> show #!2.2.1 models

> artiax particles #2.2.1 radius 0.1

> artiax particles #2.2.1 axesSize 0.1

> artiax tomo #2.1.2 slice 82

> artiax tomo #2.1.2 slice 81

minimum: 6.0, maximum: 6.0  
500 atoms, 500 residues, atom rlnTomoName range 6 to 6  
[Repeated 1 time(s)]

> artiax colormap #2.2.1.3 rlnTomoName palette redgreen minValue 6.0 maxValue
> 6.0 transparency 0.0

minimum: 0.388529, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
[Repeated 1 time(s)]

> artiax colormap #2.2.1.3 rlnLCCmax palette redgreen minValue 0.388529
> maxValue 0.550757 transparency 0.0

minimum: 0.3914965853658537, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39050739024390246, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.3914965853658537, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.3924857804878049, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39347497560975614, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.3944641707317073, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39545336585365853, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39644256097560976, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.397431756097561, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.3984209512195122, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39941014634146343, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40039934146341466, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4013885365853659, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4023777317073171, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40336692682926834, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4043561219512195, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40534531707317073, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40633451219512196, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4073237073170732, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4083129024390244, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40930209756097563, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.41029129268292686, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4112804878048781, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4122696829268293, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.41325887804878053, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.41424807317073176, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4152372682926829, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4182048536585366, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4191940487804878, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.42018324390243905, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4211724390243903, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4221616341463415, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4211724390243903, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.42018324390243905, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4191940487804878, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4182048536585366, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4172156585365854, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.41622646341463415, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4152372682926829, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.41424807317073176, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.41325887804878053, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4122696829268293, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4112804878048781, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.41029129268292686, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40930209756097563, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4083129024390244, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4073237073170732, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40633451219512196, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40534531707317073, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4043561219512195, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40336692682926834, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4023777317073171, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.4013885365853659, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.40039934146341466, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39941014634146343, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.3984209512195122, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.397431756097561, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39644256097560976, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39545336585365853, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39347497560975614, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.3924857804878049, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.39050739024390246, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.38951819512195124, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.388529, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
minimum: 0.388529, maximum: 0.550757  
500 atoms, 500 residues, atom rlnLCCmax range 0.389 to 0.551  
[Repeated 1 time(s)]

> artiax colormap #2.2.1.3 rlnLCCmax palette redgreen minValue 0.388529
> maxValue 0.550757 transparency 0.0

> save
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/ribosomecolorbyCCmax.png
> supersample 3 transparentBackground

Missing "transparentBackground" keyword's argument  

> save
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/ribosomecolorbyCCmax.png
> supersample 3 transparentBackground true

> save
> /Users/csun/Documents/Projects/CART/Krios/20241118/pytom/test20A/ribosomecolorbyCCmax.cxs

——— End of log from Thu May 21 23:54:56 2026 ———

> view name session-start

opened ChimeraX session  

> artiax start

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/options_window.py", line 213, in
_update_partlist_options  
self._show_tab("partlist")  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/options_window.py", line 248, in _show_tab  
self._update_partlist_ui()  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1647, in _update_partlist_ui  
self.color_selection.set_partlist(pl)  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
TypeError: 'list' object is not callable  
  
Error processing trigger "options partlist changed":  
TypeError: 'list' object is not callable  
  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/options_window.py", line 213, in
_update_partlist_options  
self._show_tab("partlist")  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/options_window.py", line 248, in _show_tab  
self._update_partlist_ui()  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1647, in _update_partlist_ui  
self.color_selection.set_partlist(pl)  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
TypeError: 'list' object is not callable  
  
Error processing trigger "options partlist changed":  
TypeError: 'list' object is not callable  
  
File "/Users/csun/Library/Application Support/ChimeraX/1.10/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,5
      Model Number: Z17H000F6LL/A
      Chip: Apple M2 Max
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 32 GB
      System Firmware Version: 13822.61.10
      OS Loader Version: 13822.61.10

Software:

    System Software Overview:

      System Version: macOS 26.2 (25C56)
      Kernel Version: Darwin 25.2.0
      Time since boot: 23 days, 22 hours, 17 minutes

Graphics/Displays:

    Apple M2 Max:

      Chipset Model: Apple M2 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 30
      Vendor: Apple (0x106b)
      Metal Support: Metal 4
      Displays:
        LG ULTRAFINE:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 3840 x 2160 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        ASUS PB278:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 1.0.0
    annotated-types: 0.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.5.0
    build: 1.2.2.post1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.6.0
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-CiliaBuilder: 1.1.0
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMalign: 0.1.3
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-InstantMap: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StarMap: 1.2.15
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.2
    coverage: 7.9.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    finufft: 2.5.0
    fonttools: 4.58.4
    funcparserlib: 2.0.0a0
    geomdl: 5.4.0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    pandas: 3.0.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pyarrow: 23.0.1
    pycollada: 0.8
    pydantic: 2.12.5
    pydantic_core: 2.41.5
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pyqtgraph: 0.14.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.17.1
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    starfile: 0.5.13
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing-inspection: 0.4.2
    typing_extensions: 4.15.0
    typing_extensions: 4.14.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14

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#20382 new defect

ChimeraX bug report submission

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