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Python Modules¶

Atomic Structures¶

  • atomic: Atomic structures
  • mmcif: Read and write mmCIF files
  • pdb: Read and write PDB files

ChimeraX Core¶

These modules are in chimerax.core.

Commands and Tools

  • commands: Register user commands
  • tools: Manage running tool instances
  • toolshed: Manage installed and available tools

Data

  • models: Displayed data
  • objects: Manage objects
  • session: Application session support

Files

  • fetch: Retrieve files from a network source
  • history: Application history support
  • safesave: Safely write files
  • serialize: Support serialization of “simple” types
  • settings: Save/access tool interface values

Notifications

  • data_events: Support for bulk tracking of data changes
  • logger: Application log support
  • tasks: Task creation and monitoring
  • triggerset: Support for managing triggers and handlers

Utility

  • orderedset: An ordered set
  • utils: Generically useful stuff that doesn’t fit elsewhere

Generic I/O¶

  • io: Generic I/O support

Geometry¶

  • geometry: Points and coordinate systems

Graphics¶

  • graphics: Rendering using OpenGL

Open and Save¶

  • open_command: Register file openers and database fetch
  • save_command: Register file saving

Surfaces¶

  • surface: Triangulated surface calculations

User Interface¶

  • gui: Main ChimeraX graphical user interface
  • html_scheme
  • toolbar

Volume Data¶

  • map: Density maps
  • map_fit: Fit atomic models in density maps
  • segment: Segmentations of density maps

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Table of Contents

  • Python Modules
    • Atomic Structures
    • ChimeraX Core
    • Generic I/O
    • Geometry
    • Graphics
    • Open and Save
    • Surfaces
    • User Interface
    • Volume Data

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