[Chimera-users] APBS mobile ion option

Elaine Meng meng at cgl.ucsf.edu
Thu Aug 11 09:33:40 PDT 2016

Hi Eita,
This appears to be a bug… when I tried it I got a traceback.  Normally I’d suggest you file a bug report (menu: Help… Report a Bug), but since I was able to reproduce the problem myself, I will file the report and include your email address for notification of a fix.  Thanks for letting us know about the problem, and sorry for the inconvenience.  Best,
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Aug 11, 2016, at 6:43 AM, Eita Sasaki <sasaki at org.chem.ethz.ch> wrote:
> Hi,
> I'd like to run APBS command with mobile ions (150 mM NaCl).
> I tried the following command, but it did not work.
> apbs molecule #1 ion true _posion 1,0.15,1.16 _negion -1,0.15,1.67
> If I typed just "apbs molecule #1" it works (without mobile ions).
> I am wondering my command was perhaps wrong but don't know the right one.
> I hope you could help me to solve the problem
> Thank you in advance.
> Eita

More information about the Chimera-users mailing list