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Trac Ticket Queries

In addition to reports, Trac provides support for custom ticket queries, which can be used to display tickets that meet specified criteria.

To configure and execute a custom query, switch to the View Tickets module from the navigation bar, and select the Custom Query link.

Filters

When you first go to the query page, the default filter will display tickets relevant to you:

If logged in then all open tickets, it will display open tickets assigned to you.
If not logged in but you have specified a name or email address in the preferences, then it will display all open tickets where your email (or name if email not defined) is in the CC list.
If not logged in and no name/email is defined in the preferences, then all open issues are displayed.

Current filters can be removed by clicking the button to the left with the minus sign on the label. New filters are added from the pulldown lists at the bottom corners of the filters box; 'And' conditions on the left, 'Or' conditions on the right. Filters with either a text box or a pulldown menu of options can be added multiple times to perform an Or on the criteria.

You can use the fields just below the filters box to group the results based on a field, or display the full description for each ticket.

After you have edited your filters, click the Update button to refresh your results.

Some shortcuts can be used to manipulate checkbox filters.

Clicking on a filter row label toggles all checkboxes.
Pressing the modifier key while clicking on a filter row label inverts the state of all checkboxes.
Pressing the modifier key while clicking on a checkbox selects the checkbox and deselects all other checkboxes in the filter.

The modifier key is platform and browser dependent. On Mac the modified key is Option/Alt or Command. On Linux the modifier key is Ctrl + Alt. Opera on Windows seems to use Ctrl + Alt, while Alt is effective for other Windows browsers.

Navigating Tickets

Clicking on one of the query results will take you to that ticket. You can navigate through the results by clicking the Next Ticket or Previous Ticket links just below the main menu bar, or click the Back to Query link to return to the query page.

You can safely edit any of the tickets and continue to navigate through the results using the Next/Previous/Back to Query links after saving your results. When you return to the query any tickets which were edited will be displayed with italicized text. If one of the tickets was edited such that it no longer matches the query criteria , the text will also be greyed. Lastly, if a new ticket matching the query criteria has been created, it will be shown in bold.

The query results can be refreshed and cleared of these status indicators by clicking the Update button again.

Saving Queries

Trac allows you to save the query as a named query accessible from the reports module. To save a query ensure that you have Updated the view and then click the Save query button displayed beneath the results. You can also save references to queries in Wiki content, as described below.

Note: one way to easily build queries like the ones below, you can build and test the queries in the Custom report module and when ready - click Save query. This will build the query string for you. All you need to do is remove the extra line breaks.

Note: you must have the REPORT_CREATE permission in order to save queries to the list of default reports. The Save query button will only appear if you are logged in as a user that has been granted this permission. If your account does not have permission to create reports, you can still use the methods below to save a query.

Using TracLinks

You may want to save some queries so that you can come back to them later. You can do this by making a link to the query from any Wiki page.

[query:status=new|assigned|reopened&version=1.0 Active tickets against 1.0]

Which is displayed as:

Active tickets against 1.0

This uses a very simple query language to specify the criteria, see Query Language.

Alternatively, you can copy the query string of a query and paste that into the Wiki link, including the leading ? character:

[query:?status=new&status=assigned&status=reopened&group=owner Assigned tickets by owner]

Which is displayed as:

Assigned tickets by owner

Customizing the table format

You can also customize the columns displayed in the table format (format=table) by using col=<field>. You can specify multiple fields and what order they are displayed in by placing pipes (|) between the columns:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter)]]

This is displayed as:

Results (1 - 3 of 20346)

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Ticket	Resolution	Summary	Owner	Reporter
#27161	can't_reproduce	Crash on exit	pett	chimera-bug-report@…
#27160	not_a_bug	Volume deleted while open	goddard	chimera-bug-report@…
#27159	not_a_bug	FindHBond: upsilon tau donor not bonded to exactly one heavy atom	pett	dumplings6868@…

1 2 3 4 5 6 7 8 9 10 11 →

Full rows

In table format you can also have full rows by using rows=<field>:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter,rows=description)]]

This is displayed as:

Results (1 - 3 of 20346)

1 2 3 4 5 6 7 8 9 10 11 →


Ticket	Resolution	Summary	Owner	Reporter
#27161	can't_reproduce	Crash on exit	pett	chimera-bug-report@…
Description	The following bug report has been submitted: Platform: Darwin64 (NSOPENGL) Darwin 23.6.0 x86_64 Chimera Version: 1.20_b42623 Description (Describe the actions that caused this problem to occur here) Open models #0 complex two.receptor.pdbqt Reply log: Model 0 (complex two.receptor.pdbqt) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. 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#27160	not_a_bug	Volume deleted while open	goddard	chimera-bug-report@…
Description	The following bug report has been submitted: Platform: Windows64 (WGL) Microsoft Windows Unknown 10.0 (Build 19045) x64 Chimera Version: 1.18_b42531 Description (Describe the actions that caused this problem to occur here) Open models #0.1 J207_component_000_frame_000.mrc #0.2 J207_component_000_frame_001.mrc #0.3 J207_component_000_frame_002.mrc #0.4 J207_component_000_frame_003.mrc #0.5 J207_component_000_frame_004.mrc #0.6 J207_component_000_frame_005.mrc #0.7 J207_component_000_frame_006.mrc #0.8 J207_component_000_frame_007.mrc #0.9 J207_component_000_frame_008.mrc #0.10 J207_component_000_frame_009.mrc #1.1 J207_component_001_frame_000.mrc #1.2 J207_component_001_frame_001.mrc #1.3 J207_component_001_frame_002.mrc #1.4 J207_component_001_frame_003.mrc #1.5 J207_component_001_frame_004.mrc #1.6 J207_component_001_frame_005.mrc #1.7 J207_component_001_frame_006.mrc #1.8 J207_component_001_frame_007.mrc #1.9 J207_component_001_frame_008.mrc #1.10 J207_component_001_frame_009.mrc #2.1 J207_component_002_frame_000.mrc #2.2 J207_component_002_frame_001.mrc #2.3 J207_component_002_frame_002.mrc #2.4 J207_component_002_frame_003.mrc #2.5 J207_component_002_frame_004.mrc #2.6 J207_component_002_frame_005.mrc #2.7 J207_component_002_frame_006.mrc #2.8 J207_component_002_frame_007.mrc #2.9 J207_component_002_frame_008.mrc #2.10 J207_component_002_frame_009.mrc #3.1 J210_component_000_frame_000.mrc #3.2 J210_component_000_frame_001.mrc #3.3 J210_component_000_frame_002.mrc #3.4 J210_component_000_frame_003.mrc #3.5 J210_component_000_frame_004.mrc #3.6 J210_component_000_frame_005.mrc #3.7 J210_component_000_frame_006.mrc #3.8 J210_component_000_frame_007.mrc #3.9 J210_component_000_frame_008.mrc #3.10 J210_component_000_frame_009.mrc #4.1 J210_component_001_frame_000.mrc #4.2 J210_component_001_frame_001.mrc #4.3 J210_component_001_frame_002.mrc #4.4 J210_component_001_frame_003.mrc #4.5 J210_component_001_frame_004.mrc #4.6 J210_component_001_frame_005.mrc #4.7 J210_component_001_frame_006.mrc #4.8 J210_component_001_frame_007.mrc #4.9 J210_component_001_frame_008.mrc #4.10 J210_component_001_frame_009.mrc #5.1 J210_component_002_frame_000.mrc #5.2 J210_component_002_frame_001.mrc #5.3 J210_component_002_frame_002.mrc #5.4 J210_component_002_frame_003.mrc #5.5 J210_component_002_frame_004.mrc #5.6 J210_component_002_frame_005.mrc #5.7 J210_component_002_frame_006.mrc #5.8 J210_component_002_frame_007.mrc #5.9 J210_component_002_frame_008.mrc #5.10 J210_component_002_frame_009.mrc Reply log: Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_000.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_000.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_001.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_001.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' Error processing trigger "new frame": IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') See reply log for Python traceback. Traceback (most recent call last): File "C:\APPS\chimera\Chimera 1.18\share\chimera\triggerSet.py", line 83, in invoke self._funcData, triggerData) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 98, in next_time_cb self.change_time(tn) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 132, in change_time self.show_time(ts, t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\play.py", line 178, in show_time ts.show_time(t) File "C:\APPS\chimera\Chimera 1.18\share\VolumeSeries\__init__.py", line 71, in show_time v.show() File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 699, in show self.keep_displayed_data = self.displayed_matrices(require_levels = True) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1855, in displayed_matrices matrices.append(self.matrix(read_matrix)) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1321, in matrix m = self.region_matrix(r, read_matrix) File "C:\APPS\chimera\Chimera 1.18\share\VolumeViewer\volume.py", line 1345, in region_matrix m = d.matrix(origin, size, step, progress, from_cache_only) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\griddata.py", line 196, in matrix m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_grid.py", line 33, in read_matrix return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\mrc\mrc_format.py", line 281, in read_matrix progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 15, in read_array type, byte_swap, progress) File "C:\APPS\chimera\Chimera 1.18\share\VolumeData\readarray.py", line 61, in read_full_array file = open(path, 'rb') IOError: [Errno 2] No such file or directory C:\Users\30598\Desktop\cryosparc_P1130_J207_component_000\J207_component_000_frame_002.mrc You deleted a file that is still open in Chimera. To allow fast initial display of volume data Chimera does not read all data from the file when it is first opened, and will later read more data when needed. Chimera got an error trying to read from a file probably because it was deleted after opening it. : u'C:\\Users\\30598\\Desktop\\cryosparc_P1130_J207_component_000\\J207_component_000_frame_002.mrc' ―――――――――――――――――――― OpenGL Vendor: NVIDIA Corporation OpenGL Renderer: NVIDIA GeForce RTX 2060 SUPER/PCIe/SSE2 OpenGL Version: 4.6.0 NVIDIA 566.36 Manufacturer: Micro-Star International Co., Ltd. Model: MS-7B54 TotalPhysicalMemory: 17119322112 ―――――――――――――――――――― Multisampling: False Shadows: False Shadow texture size: 2048 Silhouettes: False Depth cue: True Subdivision quality: 1.50 Single-layer transparency: True Transparent background: False Shaders supported: True Using shader: True Window size: 1600 1305 Camera mode: mono Orthographic projection: False Center of rotation: front center Near/far clipping: False Key light: True Fill light: True Back light: False Ambient light: 0.20 Specular sharpness: 30.00 Specular reflectivity: 1.00 ―――――――――――――――――――― AntialiasLines: native AntialiasPoints: native BlendEquation: native BlendFuncSeparate: native BrokenAttribLocation: native, disabled ChoosePixelFormat: extension ColorTable: native CompileAndExecute: native, disabled CompiledVertexArray: extension CubeMap: native CullVertex: not supported DrawElementsInstanced: native DrawRangeElements: native FBConfig: not supported FBOShadows: native FastMultisampling: native FramebufferMultisample: native FramebufferObject: native LimitVertexAttribDivisor: native, disabled Multisample: native Multitexture: native PackedDepthStencil: native PalettedTexture: not supported PointParameters: native SeamlessCubeMap: native SeparateSpecularColor: native Shading: native Shadows: native StereoMultisample: native StereoRubberBanding: native Texture3D: native TextureColorTable: not supported TextureEdgeClamp: native TrustColorLogicBlend: native TrustNormals: native VertexArray: native VertexAttrib: native VertexAttribDivisor: native VertexBufferObject: native WindowPos: not supported
#27159	not_a_bug	FindHBond: upsilon tau donor not bonded to exactly one heavy atom	pett	dumplings6868@…
Description	The following bug report has been submitted: Platform: Darwin64 (NSOPENGL) Darwin 23.6.0 x86_64 Chimera Version: 1.19_b42556 Description Trying to minimize structure pdb file Open models #0 tpr2a_clean.pdb Reply log: The following problems occurred while reading PDB file for tpr2a_clean.pdb warning: cannot find LINK/SSBOND residue ACE (0 ) warning: cannot find LINK/SSBOND residue HOH (14 ) warning: cannot find LINK/SSBOND residue HOH (59 ) warning: cannot find LINK/SSBOND residue HOH (60 ) warning: cannot find LINK/SSBOND residue NI (200 ) #0, chain A: TPR2A-domain of hop Residues with incomplete side chains: LYS 223.A GLN 224.A LEU 226.A LYS 227.A GLU 228.A LYS 229.A GLU 230.A LEU 231.A ASN 233.A ASP 234.A TYR 236.A LYS 237.A LYS 238.A LYS 239.A ASP 240.A PHE 241.A ASP 242.A THR 243.A LEU 245.A LYS 246.A HIS 247.A TYR 248.A ASP 249.A LYS 250.A LYS 252.A GLU 253.A LEU 254.A ASP 255.A PRO 256.A THR 257.A ASN 258.A MET 259.A THR 260.A TYR 261.A ILE 262.A THR 263.A ASN 264.A GLN 265.A VAL 268.A TYR 269.A PHE 270.A GLU 271.A LYS 272.A ASP 274.A TYR 275.A ASN 276.A LYS 277.A ARG 279.A GLU 280.A LEU 281.A GLU 283.A LYS 284.A ILE 286.A GLU 287.A VAL 288.A ARG 290.A GLU 291.A ASN 292.A ARG 293.A GLU 294.A ASP 295.A TYR 296.A ARG 297.A GLN 298.A ILE 299.A LYS 301.A TYR 303.A ARG 305.A ILE 306.A ASN 308.A TYR 310.A PHE 311.A LYS 312.A GLU 313.A GLU 314.A LYS 315.A TYR 316.A LYS 317.A ASP 318.A ILE 320.A HIS 321.A PHE 322.A TYR 323.A ASN 324.A LYS 325.A LEU 327.A GLU 329.A HIS 330.A ARG 331.A THR 332.A PRO 333.A ASP 334.A VAL 335.A LEU 336.A LYS 337.A LYS 338.A GLN 340.A GLN 341.A GLU 343.A LYS 344.A ILE 345.A LEU 346.A LYS 347.A GLU 348.A GLN 349.A Replacing each by 'swapaa same (residue atom spec) lib Dunbrack preserve True' LYS 223.A: phi -48.3, psi -56.2 trans Chi angles for LYS 223.A: GLN 224.A: phi -55.6, psi -42.9 trans Chi angles for GLN 224.A: LEU 226.A: phi -68.3, psi -34.6 trans Chi angles for LEU 226.A: LYS 227.A: phi -65.6, psi -41.5 trans Chi angles for LYS 227.A: GLU 228.A: phi -64.6, psi -43.8 trans Chi angles for GLU 228.A: LYS 229.A: phi -58.8, psi -43.2 trans Chi angles for LYS 229.A: GLU 230.A: phi -66.4, psi -36.2 trans Chi angles for GLU 230.A: LEU 231.A: phi -67.4, psi -32.9 trans Chi angles for LEU 231.A: ASN 233.A: phi -59.7, psi -44.8 trans Chi angles for ASN 233.A: ASP 234.A: phi -58.6, psi -42.8 trans Chi angles for ASP 234.A: TYR 236.A: phi -52.3, psi -47.1 trans Chi angles for TYR 236.A: LYS 237.A: phi -61.9, psi -25.6 trans Chi angles for LYS 237.A: LYS 238.A: phi -94.5, psi 9.2 trans Chi angles for LYS 238.A: LYS 239.A: phi 69.0, psi 22.7 trans Chi angles for LYS 239.A: ASP 240.A: phi -94.2, psi 80.2 trans Chi angles for ASP 240.A: PHE 241.A: phi -69.5, psi -33.1 trans Chi angles for PHE 241.A: ASP 242.A: phi -65.1, psi -45.7 trans Chi angles for ASP 242.A: THR 243.A: phi -60.8, psi -47.1 trans Chi angles for THR 243.A: -68.7 LEU 245.A: phi -61.2, psi -42.4 trans Chi angles for LEU 245.A: LYS 246.A: phi -62.2, psi -40.3 trans Chi angles for LYS 246.A: HIS 247.A: phi -74.1, psi -32.9 trans Chi angles for HIS 247.A: TYR 248.A: phi -67.9, psi -34.6 trans Chi angles for TYR 248.A: ASP 249.A: phi -61.0, psi -43.2 trans Chi angles for ASP 249.A: LYS 250.A: phi -67.5, psi -35.2 trans Chi angles for LYS 250.A: LYS 252.A: phi -65.6, psi -37.3 trans Chi angles for LYS 252.A: GLU 253.A: phi -61.2, psi -40.3 trans Chi angles for GLU 253.A: LEU 254.A: phi -80.6, psi -30.0 trans Chi angles for LEU 254.A: ASP 255.A: phi -137.8, psi 69.5 trans Chi angles for ASP 255.A: PRO 256.A: phi -62.5, psi -11.5 trans Chi angles for PRO 256.A: THR 257.A: phi -97.8, psi 4.6 trans Chi angles for THR 257.A: 62.5 ASN 258.A: phi -94.1, psi 109.0 trans Chi angles for ASN 258.A: MET 259.A: phi -72.1, psi -15.5 trans Chi angles for MET 259.A: THR 260.A: phi -61.9, psi -38.0 trans Chi angles for THR 260.A: -61.7 TYR 261.A: phi -66.1, psi -32.2 trans Chi angles for TYR 261.A: ILE 262.A: phi -72.9, psi -47.3 trans Chi angles for ILE 262.A: THR 263.A: phi -63.9, psi -30.9 trans Chi angles for THR 263.A: 58.0 ASN 264.A: phi -67.1, psi -40.7 trans Chi angles for ASN 264.A: GLN 265.A: phi -64.9, psi -32.7 trans Chi angles for GLN 265.A: VAL 268.A: phi -61.5, psi -49.6 trans Chi angles for VAL 268.A: TYR 269.A: phi -63.9, psi -36.3 trans Chi angles for TYR 269.A: PHE 270.A: phi -56.1, psi -48.5 trans Chi angles for PHE 270.A: GLU 271.A: phi -70.5, psi -19.8 trans Chi angles for GLU 271.A: LYS 272.A: phi -84.8, psi -8.5 trans Chi angles for LYS 272.A: ASP 274.A: phi -90.9, psi 71.7 trans Chi angles for ASP 274.A: TYR 275.A: phi -57.8, psi -37.8 trans Chi angles for TYR 275.A: ASN 276.A: phi -61.9, psi -45.6 trans Chi angles for ASN 276.A: LYS 277.A: phi -65.6, psi -38.0 trans Chi angles for LYS 277.A: ARG 279.A: phi -63.5, psi -37.0 trans Chi angles for ARG 279.A: GLU 280.A: phi -60.9, psi -44.1 trans Chi angles for GLU 280.A: LEU 281.A: phi -66.8, psi -40.1 trans Chi angles for LEU 281.A: GLU 283.A: phi -58.4, psi -44.7 trans Chi angles for GLU 283.A: LYS 284.A: phi -59.5, psi -46.1 trans Chi angles for LYS 284.A: ILE 286.A: phi -65.1, psi -39.5 trans Chi angles for ILE 286.A: GLU 287.A: phi -56.2, psi -53.7 trans Chi angles for GLU 287.A: VAL 288.A: phi -58.3, psi -43.1 trans Chi angles for VAL 288.A: ARG 290.A: phi -63.2, psi -26.5 trans Chi angles for ARG 290.A: GLU 291.A: phi -62.6, psi -47.2 trans Chi angles for GLU 291.A: ASN 292.A: phi -96.4, psi 96.2 trans Chi angles for ASN 292.A: ARG 293.A: phi -63.1, psi 30.0 trans Chi angles for ARG 293.A: GLU 294.A: phi -124.3, psi 0.2 trans Chi angles for GLU 294.A: ASP 295.A: phi -91.5, psi 31.1 trans Chi angles for ASP 295.A: TYR 296.A: phi -53.8, psi -37.3 trans Chi angles for TYR 296.A: ARG 297.A: phi -68.8, psi -37.4 trans Chi angles for ARG 297.A: GLN 298.A: phi -75.2, psi -28.8 trans Chi angles for GLN 298.A: ILE 299.A: phi -68.3, psi -39.8 trans Chi angles for ILE 299.A: LYS 301.A: phi -63.3, psi -40.2 trans Chi angles for LYS 301.A: TYR 303.A: phi -61.3, psi -41.0 trans Chi angles for TYR 303.A: ARG 305.A: phi -65.1, psi -39.6 trans Chi angles for ARG 305.A: ILE 306.A: phi -61.8, psi -45.8 trans Chi angles for ILE 306.A: ASN 308.A: phi -60.4, psi -39.1 trans Chi angles for ASN 308.A: TYR 310.A: phi -72.1, psi -37.5 trans Chi angles for TYR 310.A: PHE 311.A: phi -60.4, psi -45.2 trans Chi angles for PHE 311.A: LYS 312.A: phi -56.1, psi -37.5 trans Chi angles for LYS 312.A: GLU 313.A: phi -87.1, psi 8.5 trans Chi angles for GLU 313.A: GLU 314.A: phi 65.1, psi 24.4 trans Chi angles for GLU 314.A: LYS 315.A: phi -100.6, psi 68.7 trans Chi angles for LYS 315.A: TYR 316.A: phi -58.2, psi -36.7 trans Chi angles for TYR 316.A: LYS 317.A: phi -61.1, psi -42.3 trans Chi angles for LYS 317.A: ASP 318.A: phi -71.1, psi -34.2 trans Chi angles for ASP 318.A: ILE 320.A: phi -57.1, psi -44.0 trans Chi angles for ILE 320.A: HIS 321.A: phi -59.0, psi -46.7 trans Chi angles for HIS 321.A: PHE 322.A: phi -71.8, psi -26.0 trans Chi angles for PHE 322.A: TYR 323.A: phi -68.4, psi -35.9 trans Chi angles for TYR 323.A: ASN 324.A: phi -65.4, psi -40.7 trans Chi angles for ASN 324.A: LYS 325.A: phi -60.3, psi -42.6 trans Chi angles for LYS 325.A: LEU 327.A: phi -56.8, psi -38.2 trans Chi angles for LEU 327.A: GLU 329.A: phi -73.4, psi -48.5 trans Chi angles for GLU 329.A: HIS 330.A: phi -155.4, psi 120.8 trans Chi angles for HIS 330.A: ARG 331.A: phi -81.2, psi 132.4 trans Chi angles for ARG 331.A: THR 332.A: phi -135.2, psi 142.0 trans Chi angles for THR 332.A: 60.8 PRO 333.A: phi -61.5, psi -36.5 trans Chi angles for PRO 333.A: ASP 334.A: phi -66.9, psi -43.0 trans Chi angles for ASP 334.A: VAL 335.A: phi -68.0, psi -37.6 trans Chi angles for VAL 335.A: LEU 336.A: phi -62.3, psi -41.5 trans Chi angles for LEU 336.A: LYS 337.A: phi -63.8, psi -45.2 trans Chi angles for LYS 337.A: LYS 338.A: phi -61.3, psi -42.9 trans Chi angles for LYS 338.A: GLN 340.A: phi -62.5, psi -39.5 trans Chi angles for GLN 340.A: GLN 341.A: phi -60.8, psi -48.0 trans Chi angles for GLN 341.A: GLU 343.A: phi -66.4, psi -41.3 trans Chi angles for GLU 343.A: LYS 344.A: phi -63.7, psi -42.7 trans Chi angles for LYS 344.A: ILE 345.A: phi -64.5, psi -43.6 trans Chi angles for ILE 345.A: LEU 346.A: phi -67.7, psi -47.9 trans Chi angles for LEU 346.A: LYS 347.A: phi -54.8, psi -43.6 trans Chi angles for LYS 347.A: GLU 348.A: phi -63.8, psi -35.9 trans Chi angles for GLU 348.A: GLN 349.A: phi -71.1, psi none trans Chi angles for GLN 349.A: Applying THR rotamer (chi angles: 61.3) to THR 332.A Applying VAL rotamer (chi angles: 173.1) to VAL 335.A Applying VAL rotamer (chi angles: 171.5) to VAL 288.A Applying ILE rotamer (chi angles: -67.0 169.0) to ILE 299.A Applying TYR rotamer (chi angles: -72.7 110.3) to TYR 303.A Applying ILE rotamer (chi angles: -67.8 167.9) to ILE 306.A Applying ILE rotamer (chi angles: -68.1 168.5) to ILE 320.A Applying LEU rotamer (chi angles: -178.6 60.2) to LEU 336.A Applying THR rotamer (chi angles: -62.1) to THR 243.A Applying THR rotamer (chi angles: 60.9) to THR 257.A Applying THR rotamer (chi angles: -61.5) to THR 260.A Applying TYR rotamer (chi angles: -71.7 135.6) to TYR 261.A Applying ILE rotamer (chi angles: -66.5 168.5) to ILE 262.A Applying THR rotamer (chi angles: 59.1) to THR 263.A Applying VAL rotamer (chi angles: 171.3) to VAL 268.A Applying ILE rotamer (chi angles: -67.0 169.0) to ILE 286.A Applying LYS rotamer (chi angles: -179.0 -96.3 -71.1 178.0) to LYS 223.A Applying ASP rotamer (chi angles: 57.8 -16.4) to ASP 334.A Applying ARG rotamer (chi angles: -66.0 -67.8 -178.3 -173.0) to ARG 290.A Applying ASN rotamer (chi angles: -73.2 -78.5) to ASN 308.A Applying LYS rotamer (chi angles: -63.9 -64.8 -87.6 70.8) to LYS 325.A Applying LYS rotamer (chi angles: -178.3 174.8 73.1 70.7) to LYS 229.A Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to LYS 344.A Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to LYS 237.A Applying LYS rotamer (chi angles: -89.2 65.6 -178.2 -67.9) to LYS 246.A Applying LYS rotamer (chi angles: -178.2 90.4 -76.8 -174.6) to LYS 252.A Applying ASP rotamer (chi angles: -172.4 10.7) to ASP 255.A Applying GLN rotamer (chi angles: -65.8 -178.9 75.3) to GLN 349.A Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to LYS 272.A Applying ARG rotamer (chi angles: -71.0 -167.5 -64.0 -87.5) to ARG 279.A Applying LYS rotamer (chi angles: -63.0 -78.2 84.4 174.0) to LYS 284.A Applying LEU rotamer (chi angles: 178.6 60.3) to LEU 346.A Applying GLN rotamer (chi angles: -175.4 64.8 78.1) to GLN 340.A Applying GLN rotamer (chi angles: -175.4 64.8 52.5) to GLN 224.A Applying LEU rotamer (chi angles: -67.8 174.1) to LEU 226.A Applying GLU rotamer (chi angles: -69.0 -65.0 8.4) to GLU 329.A Applying HIS rotamer (chi angles: -174.7 71.7) to HIS 330.A Applying GLU rotamer (chi angles: -69.9 176.8 -8.7) to GLU 348.A Applying ARG rotamer (chi angles: -177.2 -100.0 -75.0 103.9) to ARG 331.A Applying LYS rotamer (chi angles: -71.5 -170.9 -71.7 -173.4) to LYS 337.A Applying GLU rotamer (chi angles: -178.5 179.0 -1.2) to GLU 287.A Applying GLU rotamer (chi angles: -178.5 179.0 -1.2) to GLU 291.A Applying ASN rotamer (chi angles: -176.7 -101.2) to ASN 292.A Applying ARG rotamer (chi angles: -62.1 -67.9 179.5 87.3) to ARG 293.A Applying GLU rotamer (chi angles: 58.9 84.3 47.4) to GLU 294.A Applying ASP rotamer (chi angles: -67.5 -5.4) to ASP 295.A Applying TYR rotamer (chi angles: -73.0 110.8) to TYR 296.A Applying ARG rotamer (chi angles: -70.1 177.8 -180.0 173.5) to ARG 297.A Applying GLN rotamer (chi angles: -67.6 178.4 -23.5) to GLN 298.A Applying LYS rotamer (chi angles: -72.5 174.0 67.7 176.9) to LYS 301.A Applying ARG rotamer (chi angles: -70.4 -178.7 -176.6 -84.0) to ARG 305.A Applying TYR rotamer (chi angles: -71.7 107.9) to TYR 310.A Applying GLN rotamer (chi angles: -69.9 176.2 64.1) to GLN 341.A Applying PHE rotamer (chi angles: 176.9 78.9) to PHE 311.A Applying LYS rotamer (chi angles: -178.1 67.6 178.2 -63.2) to LYS 312.A Applying GLU rotamer (chi angles: -64.6 179.5 -3.7) to GLU 313.A Applying GLU rotamer (chi angles: -170.5 -83.2 -28.7) to GLU 314.A Applying LYS rotamer (chi angles: -64.6 -174.8 -71.7 -174.1) to LYS 315.A Applying TYR rotamer (chi angles: -72.7 110.3) to TYR 316.A Applying LYS rotamer (chi angles: 179.8 -96.2 -71.1 178.0) to LYS 317.A Applying ASP rotamer (chi angles: -71.2 -15.9) to ASP 318.A Applying HIS rotamer (chi angles: -179.8 72.7) to HIS 321.A Applying PHE rotamer (chi angles: -73.1 78.9) to PHE 322.A Applying GLU rotamer (chi angles: -68.9 177.5 -9.2) to GLU 343.A Applying TYR rotamer (chi angles: -71.7 107.9) to TYR 323.A Applying ASN rotamer (chi angles: -73.1 -22.4) to ASN 324.A Applying LEU rotamer (chi angles: -69.2 172.7) to LEU 327.A Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to LYS 227.A Applying GLU rotamer (chi angles: -69.4 -64.9 -48.6) to GLU 228.A Applying GLU rotamer (chi angles: -170.6 -83.2 -2.9) to GLU 230.A Applying LEU rotamer (chi angles: -67.8 174.1) to LEU 231.A Applying PRO rotamer (chi angles: -27.2 37.7) to PRO 333.A Applying ASN rotamer (chi angles: -73.2 -20.5) to ASN 233.A Applying ASP rotamer (chi angles: -71.8 -15.3) to ASP 234.A Applying TYR rotamer (chi angles: 176.9 80.4) to TYR 236.A Applying LYS rotamer (chi angles: -64.3 -174.6 -70.2 -66.8) to LYS 238.A Applying LYS rotamer (chi angles: -55.0 -63.7 -173.4 -67.0) to LYS 239.A Applying ASP rotamer (chi angles: -173.6 -1.7) to ASP 240.A Applying PHE rotamer (chi angles: -73.1 104.8) to PHE 241.A Applying ASP rotamer (chi angles: -70.9 -16.3) to ASP 242.A Applying ILE rotamer (chi angles: -68.1 168.5) to ILE 345.A Applying LEU rotamer (chi angles: -69.2 172.7) to LEU 245.A Applying LYS rotamer (chi angles: -71.5 -176.9 175.1 65.8) to LYS 347.A Applying HIS rotamer (chi angles: -70.1 -68.5) to HIS 247.A Applying TYR rotamer (chi angles: -71.7 135.6) to TYR 248.A Applying ASP rotamer (chi angles: -71.8 -15.3) to ASP 249.A Applying LYS rotamer (chi angles: -66.0 -63.9 -71.6 -176.1) to LYS 250.A Applying GLU rotamer (chi angles: -69.9 176.8 -8.7) to GLU 253.A Applying LEU rotamer (chi angles: -65.9 175.1) to LEU 254.A Applying LYS rotamer (chi angles: -70.9 -171.0 -71.7 -174.5) to LYS 338.A Applying PRO rotamer (chi angles: 25.0 -35.2) to PRO 256.A Applying ASN rotamer (chi angles: -176.9 -19.5) to ASN 258.A Applying MET rotamer (chi angles: 69.1 -179.9 -71.6) to MET 259.A Applying ASN rotamer (chi angles: -73.1 -80.3) to ASN 264.A Applying GLN rotamer (chi angles: -69.4 177.4 -24.5) to GLN 265.A Applying TYR rotamer (chi angles: -72.7 110.3) to TYR 269.A Applying PHE rotamer (chi angles: 176.9 78.9) to PHE 270.A Applying GLU rotamer (chi angles: -67.2 -64.8 -44.6) to GLU 271.A Applying ASP rotamer (chi angles: -171.9 -16.2) to ASP 274.A Applying TYR rotamer (chi angles: -72.7 110.3) to TYR 275.A Applying ASN rotamer (chi angles: -73.1 -20.3) to ASN 276.A Applying LYS rotamer (chi angles: -66.0 -63.9 -71.6 -176.1) to LYS 277.A Applying GLU rotamer (chi angles: -177.3 177.0 -59.8) to GLU 280.A Applying LEU rotamer (chi angles: -68.3 173.0) to LEU 281.A Applying GLU rotamer (chi angles: -69.9 176.8 -8.7) to GLU 283.A residue name: ASN problem atom type atom: 5 residue atoms: 1 C C2 (7.156 6.248 14.006) 2 CA C3 (6.019 7.099 14.558) 3 CB C3 (6.366 7.547 15.983) 4 N Npl (4.773 6.32 14.557) 5 ND2 Npl (7.376 9.57 16.863) 6 O O2 (7.627 5.331 14.676) 7 OD1 O2 (8.51 8.407 15.311) residue bonds: 1<-> 6 other C<-> 4 1<-> other N 4<-> 2 2<-> 3 2<-> 1 problem: upsilon tau donor (#0:258.A@ND2) not bonded to exactly one heavy atom ―――――――――――――――――――― OpenGL Vendor: ATI Technologies Inc. OpenGL Renderer: AMD Radeon Pro 560X OpenGL Engine OpenGL Version: 2.1 ATI-5.5.20 Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,1 Processor Name: 6-Core Intel Core i7 Processor Speed: 2.6 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2103.100.6.0.0 (iBridge: 23.16.14242.0.0,0) OS Loader Version: 580.140.1~106 Software: System Software Overview: System Version: macOS 14.8.5 (23J423) Kernel Version: Darwin 23.6.0 Time since boot: 3 hours, 7 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0000 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Radeon Pro 560X: Chipset Model: Radeon Pro 560X Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c2 ROM Revision: 113-C980AL-075 VBIOS Version: 113-C97501U-005 EFI Driver Version: 01.A1.075 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal ―――――――――――――――――――― Multisampling: False Shadows: False Shadow texture size: 2048 Silhouettes: False Depth cue: True Subdivision quality: 1.50 Single-layer transparency: True Transparent background: False Shaders supported: True Using shader: True Window size: 1548 1426 Camera mode: mono Orthographic projection: False Center of rotation: front center Near/far clipping: False Key light: True Fill light: True Back light: False Ambient light: 0.20 Specular sharpness: 30.00 Specular reflectivity: 1.00 ―――――――――――――――――――― AntialiasLines: native AntialiasPoints: native BlendEquation: native BlendFuncSeparate: native BrokenAttribLocation: native, disabled ChoosePixelFormat: not supported ColorTable: native CompileAndExecute: native CompiledVertexArray: not supported CubeMap: native CullVertex: not supported DrawElementsInstanced: extension DrawRangeElements: native FBConfig: not supported FBOShadows: native FastMultisampling: native FramebufferMultisample: native FramebufferObject: native LimitVertexAttribDivisor: native, disabled Multisample: native Multitexture: native PackedDepthStencil: native PalettedTexture: not supported PointParameters: native SeamlessCubeMap: extension SeparateSpecularColor: native Shading: native Shadows: native StereoMultisample: native StereoRubberBanding: native Texture3D: native TextureColorTable: not supported TextureEdgeClamp: native TrustColorLogicBlend: native TrustNormals: native VertexArray: native VertexAttrib: native VertexAttribDivisor: extension VertexBufferObject: native WindowPos: not supported File attachment: tpr2a_clean.pdb tpr2a_clean.pdb

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Query Language

query: TracLinks and the [[TicketQuery]] macro both use a mini “query language” for specifying query filters. Filters are separated by ampersands (&). Each filter consists of the ticket field name, an operator and one or more values. More than one value are separated by a pipe (|), meaning that the filter matches any of the values. To include a literal & or | in a value, escape the character with a backslash (\).

The available operators are:

`=`	the field content exactly matches one of the values
`~=`	the field content contains one or more of the values
`^=`	the field content starts with one of the values
`$=`	the field content ends with one of the values

All of these operators can also be negated:

`!=`	the field content matches none of the values
`!~=`	the field content does not contain any of the values
`!^=`	the field content does not start with any of the values
`!$=`	the field content does not end with any of the values

The date fields created and modified can be constrained by using the = operator and specifying a value containing two dates separated by two dots (..). Either end of the date range can be left empty, meaning that the corresponding end of the range is open. The date parser understands a few natural date specifications like "3 weeks ago", "last month" and "now", as well as Bugzilla-style date specifications like "1d", "2w", "3m" or "4y" for 1 day, 2 weeks, 3 months and 4 years, respectively. Spaces in date specifications can be omitted to avoid having to quote the query string.

`created=2007-01-01..2008-01-01`	query tickets created in 2007
`created=lastmonth..thismonth`	query tickets created during the previous month
`modified=1weekago..`	query tickets that have been modified in the last week
`modified=..30daysago`	query tickets that have been inactive for the last 30 days

See also: TracTickets, TracReports, TracGuide, TicketQuery

Last modified 10 years ago Last modified on Jan 4, 2017, 10:45:04 AM

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