Timeline



Jul 25, 2026:

12:08 PM Ticket #20794 (Clipper session restore: self.structure is None) created by srr131@…
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10:24 AM Ticket #20793 (Various Match→Align errors) created by chimerax-bug-report@…
[…]

Jul 24, 2026:

9:25 PM Ticket #20792 (SEQCROW: error reading XYZ file) created by 1806191@…
[…] azIMFPZTMOP_crest_best.xyz​
10:24 AM Ticket #20790 (Douse: name 'compare_model' is not defined) closed by Eric Pettersen
fixed: Hi Max, Thanks for reporting this problem. The problem was in …
10:20 AM Ticket #20791 (Crash trying to tab one dock widget with another) created by chimerax-bug-report@…
[…]
5:11 AM Ticket #20790 (Douse: name 'compare_model' is not defined) created by borgosch@…
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Jul 23, 2026:

5:53 PM Ticket #20762 (Minimization failure: KeyError: 'N') closed by Eric Pettersen
fixed: Hi, Thanks for reporting this problem, the fix will be in tomorrow's …
1:48 PM Ticket #19894 ("align axis" command) closed by Eric Pettersen
fixed: Implemented as "axis align" command in current daily build.
12:17 PM Ticket #20788 (Crash handling event) closed by Tom Goddard
limitation: Looks like the user may have run ChimeraX directly from the DMG and …
11:52 AM Ticket #20783 (ViewDock opening a swissdock file: not enough values to unpack ...) closed by Eric Pettersen
can't reproduce
11:50 AM Ticket #20781 (H-Bonds: acc_phi_psi() bad number of arguments) closed by Eric Pettersen
not a bug: Hi, Your SIRT1_clean.pdb file produced a structure with incorrect …
11:43 AM Ticket #20779 (KVFinder on old MacOS) closed by Eric Pettersen
limitation: Hi Stuti, Unfortunately, the underlying pyKVFinder program that …
11:08 AM Ticket #20789 (Suppress "GBM is not supported..." startup Qt message on Linux) closed by Tom Goddard
fixed: Fixed. We already had a list of about 8 Qt messages that we suppress …
10:57 AM Ticket #20789 (Suppress "GBM is not supported..." startup Qt message on Linux) created by goddard@…
[…]
3:15 AM Ticket #20788 (Crash handling event) created by chimerax-bug-report@…
[…]

Jul 22, 2026:

6:28 PM ChangeLog edited by Tom Goddard
(diff)
6:23 PM ChangeLog edited by Tom Goddard
(diff)
6:21 PM ChangeLog edited by Tom Goddard
(diff)
6:18 PM Ticket #20787 (Add alphafold fetch for mutation scores sequences) closed by Tom Goddard
fixed: Done. If the mutation set is fetched from MaveDB it usually has a …
5:48 PM Ticket #20787 (Add alphafold fetch for mutation scores sequences) created by Tom Goddard
Add a button to the Mutation Scores panel to fetch an AlphaFold …
5:05 PM Ticket #20786 (Added fetching of MaveDB mutation data) closed by Tom Goddard
fixed: Done. MaveDB entry identifiers are 00000001, 00000002, .... I allow …
4:48 PM Ticket #20786 (Added fetching of MaveDB mutation data) created by Tom Goddard
Allow fetching mutation score data from the Multiplexed Assays of …
4:43 PM Ticket #20785 (Allow coloring structure at residues with uniprot variant mutations ...) closed by Tom Goddard
fixed: Done. I added a mutationscores merge command and also added an …
4:02 PM Ticket #20785 (Allow coloring structure at residues with uniprot variant mutations ...) created by Tom Goddard
I'd like to be able to look at deep mutational scan scores for just …
3:51 PM Ticket #20142 (Make a mutation score heatmap GUI) closed by Tom Goddard
fixed: Done. The heatmaps are reasonably usable now. If more improvements …
3:49 PM Ticket #19403 (Add structure coloring controls to mutation scores scatter plot) closed by Tom Goddard
fixed: Done. The mutation score ranges option was documented by Elaine. All …
3:43 PM Ticket #20597 (Opening mutation score .csv file does not show the scores in the order ...) closed by Tom Goddard
fixed: Fixed. I made the scores appear in alphabetical order.
3:40 PM Ticket #20784 (OpenFold prediction fails if model parameters did not download during ...) created by Tom Goddard
In ticket #20783 the anonymous user tries to run several OpenFold …
1:58 PM ChangeLog edited by Eric Pettersen
(diff)
1:58 PM ChangeLog edited by Eric Pettersen
(diff)
1:58 PM ChangeLog edited by Eric Pettersen
(diff)
1:57 PM ChangeLog edited by Eric Pettersen
(diff)
12:22 PM Ticket #20783 (ViewDock opening a swissdock file: not enough values to unpack ...) created by chimerax-bug-report@…
[…]
11:10 AM Ticket #20782 (Python shell debugger warning) closed by Tom Goddard
not a bug
11:03 AM Ticket #20780 (H-Bonds: acc_phi_psi() bad number of arguments) closed by Tom Goddard
duplicate: Same as #20781
11:01 AM Ticket #20777 (KVFinder on old MacOS) closed by Tom Goddard
duplicate: Same as #20779
8:18 AM Ticket #20782 (Python shell debugger warning) created by alexandra.zahradnikova@…
[…]
3:14 AM Ticket #20781 (H-Bonds: acc_phi_psi() bad number of arguments) created by shreyasukar@…
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3:13 AM Ticket #20780 (H-Bonds: acc_phi_psi() bad number of arguments) created by chimerax-bug-report@…
[…]

Jul 21, 2026:

7:47 AM Ticket #20779 (KVFinder on old MacOS) created by stuti_sharma@…
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12:47 AM Ticket #20778 (pyKVFinder: KeyError: 'KAA') created by aleksandr.kharchenko@…
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Jul 20, 2026:

6:16 PM Ticket #20768 (Session save failure) closed by Eric Pettersen
can't reproduce: Hi Lydia, Thanks for reporting this problem and providing the session …
4:12 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:10 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:10 PM Dev2026-07-20 edited by Tom Goddard
(diff)
3:59 PM Ticket #20335 (Python 3.14 changes refcount semantics) closed by Tom Goddard
fixed: Fixed. Only the geometry place.py use of getrefcount() needed fixing. …
3:02 PM Dev2026-07-20 created by Tom Goddard
3:01 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:10 PM Ticket #20773 (Crash in NSAccessibility routines in Qt 6.10.2 and ChimeraX 1.12) closed by Tom Goddard
can't reproduce: I think this the first crash report in Mac accessibility routines in …
11:58 AM Ticket #20777 (KVFinder on old MacOS) created by chimerax-bug-report@…
[…]
10:36 AM Ticket #20776 (Fetch identifier) closed by Eric Pettersen
not a bug: Hi Thu, P0CE95 is not a PDB identifier. As the error message says, …
10:28 AM Ticket #20775 (KVFinder on old MacOS) closed by Eric Pettersen
duplicate
10:20 AM Ticket #20772 (H-Bonds: More than 2 coplanar positions specified) closed by Eric Pettersen
can't reproduce
10:19 AM Ticket #20771 (Minimize: KeyError: 'OP3') closed by Eric Pettersen
can't reproduce
9:08 AM Ticket #20776 (Fetch identifier) created by nguy2883@…
[…]
8:59 AM Ticket #20775 (KVFinder on old MacOS) created by chimerax-bug-report@…
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Jul 19, 2026:

6:25 PM Ticket #20774 (ISOLDLE: validation tab refers to deleted residue) created by john.heumann@…
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8:27 AM Ticket #20773 (Crash in NSAccessibility routines in Qt 6.10.2 and ChimeraX 1.12) created by chimerax-bug-report@…
[…]

Jul 17, 2026:

11:14 PM Ticket #20772 (H-Bonds: More than 2 coplanar positions specified) created by chimerax-bug-report@…
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8:05 PM Ticket #20771 (Minimize: KeyError: 'OP3') created by chimerax-bug-report@…
[…]
12:06 PM Ticket #20770 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This ChimeraX crash is due to a bug in the Qt window toolkit and …
11:41 AM Ticket #20769 (ArtiaX: read RELION STAR file: Cannot interpret as a data type) closed by Eric Pettersen
duplicate: User was using old version of ArtiaX (0.1).
6:40 AM Ticket #20770 (Crash on Mac waking from sleep) created by goncalvesgm@…
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5:07 AM Ticket #20769 (ArtiaX: read RELION STAR file: Cannot interpret as a data type) created by chimerax-bug-report@…
[…]
3:46 AM Ticket #20768 (Session save failure) created by lydia.godfrey@…
[…] KIF1C mutations chimera.cxs​

Jul 16, 2026:

3:00 PM Ticket #20765 ('measure mapvalues' should disallow illegal/problematic attribute names) closed by Tom Goddard
fixed: Fixed. An error is issued explaining the allowed attribute name …
11:26 AM Ticket #20766 (blast protein: 'return' in a 'finally' block) closed by Zach Pearson
fixed: It may be easy to just patch grako (some more). I moved the return in …
10:05 AM Ticket #20767 (sel <named selection> selects all atoms in chain B) created by mohammad.alhossary@…
[…] log.txt​ wFAP0.pdb​
9:36 AM Ticket #20764 (Multiple consecutive identical commands) closed by Eric Pettersen
can't reproduce: Is this AI driven?
9:35 AM Ticket #20766 (blast protein: 'return' in a 'finally' block) created by Eric Pettersen
[…]
8:59 AM Ticket #20765 ('measure mapvalues' should disallow illegal/problematic attribute names) created by rwaldo@…
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7:53 AM Ticket #20764 (Multiple consecutive identical commands) created by chimerax-bug-report@…
[…]

Jul 15, 2026:

6:06 PM Ticket #20763 (Invalid escape sequence \* warning at startup in volume code) closed by Tom Goddard
fixed
6:05 PM Ticket #20763 (Invalid escape sequence \* warning at startup in volume code) reopened by Tom Goddard
Fixed. Volume save_map() function doc string had \*.cmap and \*.mrc …
5:48 PM Ticket #20763 (Invalid escape sequence \* warning at startup in volume code) closed by Tom Goddard
fixed: I didn't get this warning the second time I started this daily build, …
5:46 PM Ticket #20763 (Invalid escape sequence \* warning at startup in volume code) created by goddard@…
[…]
3:01 PM Ticket #20758 ('zone' command uses dead residue) closed by Tom Goddard
fixed: Fixed. The zone mouse mode gave an error when dragging to increase …
4:29 AM Ticket #20762 (Minimization failure: KeyError: 'N') created by gwshim0189@…
[…]

Jul 14, 2026:

3:44 PM Ticket #20761 (Color blobs mouse mode is choosing transparent colors) closed by Tom Goddard
fixed: Fixed. There was an overflow in the computation of the clicked …
3:15 PM ChangeLog edited by Greg Couch
(diff)
3:06 PM Ticket #20761 (Color blobs mouse mode is choosing transparent colors) created by goddard@…
[…]
2:57 PM Ticket #20760 (TypeError: setChecked(self, a0: bool): argument 1 has unexpected type ...) closed by Tom Goddard
fixed: Fixed. Cast from numpy.bool to Python bool in volume viewer gui code.
2:50 PM Ticket #20760 (TypeError: setChecked(self, a0: bool): argument 1 has unexpected type ...) created by goddard@…
[…]
2:18 PM Ticket #20759 (OpenGL "invalid framebuffer operation" in glclear after display reconnected) created by goddard@…
[…]
2:02 PM Ticket #20600 (Minimization of RNA fails) closed by Eric Pettersen
fixed: Fixed in tomorrow's daily build. Fix: …
12:21 PM Ticket #20758 ('zone' command uses dead residue) created by chimerax-bug-report@…
[…]
10:56 AM Ticket #20750 (numpy bool no longer accepted by QCheckBox.setChecked()) closed by Eric Pettersen
fixed: Fix: …
6:59 AM Ticket #20757 (DLL load failed while importing: An Application Control policy has ...) created by chimerax-bug-report@…
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Jul 13, 2026:

7:07 PM Ticket #20756 (DLL load failed while importing: An Application Control policy has ...) created by chimerax-bug-report@…
[…]
5:49 PM Ticket #20751 (Failed to create D3D11 swapchain) closed by Tom Goddard
nonchimerax: Nvidia graphics driver problem, Windows. I'd try rebooting the …
5:42 PM Ticket #20749 (Save image/movie, no opengl context) closed by Tom Goddard
nonchimerax: There are several problems here. First the user tries "movie encode …
5:27 PM Ticket #20748 (COD bond-perception bug) closed by Greg Couch
duplicate: Duplicate of . Likely fixed by recent change.
5:22 PM Ticket #20605 (glClear: invalid framebuffer operation drawing scene) closed by Tom Goddard
duplicate: This ChimeraX error is caused by a bug in the Mac Qt window toolkit …
5:18 PM Ticket #20755 (The GPU device instance has been suspended) closed by Eric Pettersen
duplicate
5:15 PM Ticket #20754 (The GPU device instance has been suspended) closed by Eric Pettersen
duplicate
4:54 PM Dev2026-07-13 edited by Tom Goddard
(diff)
3:00 PM Ticket #20753 (The GPU device instance has been suspended) closed by Eric Pettersen
duplicate
2:57 PM Ticket #20752 (The GPU device instance has been suspended) closed by Eric Pettersen
duplicate
2:03 PM Ticket #20745 (Trac database down (was: Re: COD bond-perception bug)) closed by Eric Pettersen
fixed
1:05 PM Ticket #20755 (The GPU device instance has been suspended) created by chimerax-bug-report@…
[…]
1:05 PM Ticket #20754 (The GPU device instance has been suspended) created by chimerax-bug-report@…
[…]
1:05 PM Ticket #20753 (The GPU device instance has been suspended) created by chimerax-bug-report@…
[…]
1:05 PM Ticket #20752 (The GPU device instance has been suspended) created by chimerax-bug-report@…