Timeline



Aug 5, 2022:

7:27 PM Ticket #7410 (Crash creating SEQCROW QMenuBar in ARM tech preview) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #7409 (Probable SEQCROW/Qt crash) closed by Eric Pettersen
can't reproduce: SEQCROW makes extensive use of QMenuBar widgets whereas they are not …
5:53 PM Ticket #7409 (Probable SEQCROW/Qt crash) created by chimerax-bug-report@…
[…]
5:26 PM Ticket #7406 (Make the "close session" command reset to default graphics settings) closed by Tom Goddard
fixed: Fixed. Using command "close session" instead of "close" will now …
5:02 PM Ticket #7066 (Douse tool enhancements) closed by Eric Pettersen
fixed: Launcher implemented
3:17 PM Ticket #7408 (Graphics crash, macOS 12.5, AMD Radeon R9 M395) created by chimerax-bug-report@…
[…]
2:09 PM Ticket #7401 (Maps not aligned) closed by Tom Goddard
not a bug: Ok. I hope to put in a fix soon (next week?) that will automatically …
1:58 PM Ticket #7407 (ArtiaX error after closing all models and opening new particle list) created by goddard@…
[…]
1:34 PM Ticket #7404 (Rotate models: Require contiguous n x 3 x 4 array) closed by Tom Goddard
duplicate: Fixed a few days ago. Super annoying that numpy 1.23 changed the …
1:25 PM Ticket #7403 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) closed by Eric Pettersen
duplicate
1:05 PM Ticket #3863 (Linking two chains merges them) closed by Eric Pettersen
wontfix: Upon further review, I have decided to do nothing about this. I want …
12:18 PM Ticket #7406 (Make the "close session" command reset to default graphics settings) created by Moritz_Hunkeler@…
Moritz requests command to reset clipping / lighting / background / …
12:15 PM Ticket #7405 (Revert rotate independent mouse mode to normal rotation when models closed) created by Moritz_Hunkeler@…
[…]
10:58 AM Ticket #7404 (Rotate models: Require contiguous n x 3 x 4 array) created by chimerax-bug-report@…
[…]
10:31 AM Ticket #7403 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) created by chimerax-bug-report@…
[…]
10:15 AM Ticket #7402 (Crash at startup showing Rapid Access) created by dbratc1@…
[…]
9:32 AM Ticket #7401 (Maps not aligned) created by michelle.moritz@…
[…] Screen Shot 2022-08-05 at 9.25.29 AM.png​
9:00 AM Ticket #7399 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) closed by Eric Pettersen
duplicate
4:43 AM Ticket #7400 (Crash at startup showing Rapid Access) created by venkatareddy@…
[…]
1:11 AM Ticket #7399 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) created by chimerax-bug-report@…
[…]

Aug 4, 2022:

6:38 PM Ticket #7397 (vop: 'Place' object has no attribute 'position') closed by Tom Goddard
fixed: Fixed. The volume unroll command center option parsing was broken. A …
6:30 PM Ticket #166 (Side view display for orthographic camera) closed by Tom Goddard
fixed: Fixed. Side view scaling and bounding lines are now correct in …
5:38 PM Ticket #7398 (Crash showing Rapid Access at startup) closed by Eric Pettersen
can't reproduce
5:26 PM Ticket #2739 (Poor visibility for side view clip planes) closed by Tom Goddard
fixed: Fixed. Made line colors match Chimera. Also eye and clip planes turn …
5:01 PM Ticket #7362 (Side view not going away) closed by Tom Goddard
fixed: Fixed. Seems this bug was introduced by Qt 6.3.1. The side view …
4:35 PM Ticket #7344 (MemoryError saving session) closed by Tom Goddard
nonchimerax: I'm surprised the ran out of memory lz4 compressing the ChimeraX …
4:20 PM Ticket #7396 (Make bug reporter distinguish Mac Intel and ARM ChimeraX versions) closed by Tom Goddard
worksforme: Not needed. The "Platform" line at the top of the bug report …
4:19 PM Ticket #7398 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
3:02 PM 2022-8-4 edited by Tom Goddard
(diff)
2:22 PM Ticket #7397 (vop: 'Place' object has no attribute 'position') created by chimerax-bug-report@…
[…]
2:19 PM Ticket #6191 (QT bug?) closed by Greg Couch
can't reproduce: Insufficient information to reproduce.
2:08 PM Ticket #6669 (This copy of PyQt is unlicensed on macOS arm64) closed by Greg Couch
nonchimerax: Fixed by Riverbank after prodding from Tom Goddard.
2:04 PM NIAID2022 edited by Elaine Meng
(diff)
2:02 PM NIAID2022 edited by Elaine Meng
(diff)
1:24 PM NIAID2022 edited by Elaine Meng
(diff)
12:26 PM Ticket #7396 (Make bug reporter distinguish Mac Intel and ARM ChimeraX versions) created by Tom Goddard
Currently bug reporter gives no indication if the Intel or ARM …
12:22 PM Ticket #7395 (Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with ...) created by Tom Goddard
Mac ARM ChimeraX is logging many warnings […] in ticket #7393.
10:30 AM Ticket #7389 (Freeze accessing Toolshed) closed by Greg Couch
can't reproduce: Are you having network problems? "More Tools..." uses an internal web …
10:29 AM Ticket #7394 (Stop simulation: model is None) created by a.m.borowska@…
[…]
10:26 AM Ticket #7393 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) closed by Eric Pettersen
duplicate
10:13 AM Ticket #7392 (Crash in QApplication.quit()) closed by Eric Pettersen
can't reproduce
9:41 AM Ticket #7393 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) created by chimerax-bug-report@…
[…]
9:40 AM Ticket #7386 (Crash showing Rapid Access at startup) closed by Eric Pettersen
can't reproduce
8:37 AM Ticket #7392 (Crash in QApplication.quit()) created by chimerax-bug-report@…
[…]
8:33 AM Ticket #7391 (ArtiaX: ValueError: Unknown class name 'MarkerSetPlus') created by chimerax-bug-report@…
[…]
6:16 AM Ticket #7390 (Crash in color button code) created by kalyan.das@…
[…]
5:56 AM Ticket #7389 (Freeze accessing Toolshed) created by bm571@…
[…]

Aug 3, 2022:

8:16 PM Ticket #7388 (BLAST of NR database uses 180 Gbytes of resident memory on server) created by Tom Goddard
This ticket is about high server memory use by BLAST searches of NR …
6:57 PM Ticket #7384 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) closed by Tom Goddard
fixed: Fixed. Changed the arrays C++ code is_contiguous() method to accept 0 …
6:09 PM Ticket #7387 (BLAST of Uniref50, UniRef90, UniRef100 appears to be using old ...) created by Tom Goddard
Not sure if these are the uniref databases being used by blast …
6:07 PM Ticket #7386 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
6:03 PM Ticket #7385 (Crash showing Rapid Access at startup) closed by Eric Pettersen
can't reproduce
6:00 PM Ticket #7383 (UnicodeDecodeError reading PDB file) closed by Eric Pettersen
can't reproduce: I am totally mystified by this stack trace. When reading a normal …
3:32 PM Ticket #7385 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
12:33 PM Ticket #7384 (Pseudobond drawing: Cylinder end point, radii or rotation array not ...) created by chimerax-bug-report@…
[…]
11:47 AM Ticket #7383 (UnicodeDecodeError reading PDB file) created by chimerax-bug-report@…
[…]
10:34 AM Ticket #7382 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
can't reproduce: 1.3
10:33 AM Ticket #7377 (Crash reporter: ~/Library/Logs/DiagnosticReports permission denied) closed by Tom Goddard
duplicate: This error happens when ChimeraX checks to see if it crashed the last …
10:31 AM Ticket #7380 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
can't reproduce: 1.3
10:29 AM Ticket #7379 (Crash during partial structure deletion) closed by Eric Pettersen
can't reproduce
10:26 AM Ticket #7378 (Crash deleting structure during session close) closed by Eric Pettersen
can't reproduce: Not enough info to reproduce. Could well already be fixed.
10:21 AM Ticket #7376 (Crash in fork) closed by Eric Pettersen
limitation: Was using 8.1GB at the time.
10:19 AM Ticket #7375 (Unknown crash after "volume level" command) closed by Eric Pettersen
can't reproduce: Was using 8.6GB at the time
10:04 AM Ticket #7382 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
8:54 AM Ticket #7381 (ISOLDE GUI startup: __init__() got an unexpected keyword argument ...) created by dmargulies@…
[…]
6:24 AM Ticket #7380 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:31 AM Ticket #7379 (Crash during partial structure deletion) created by chimerax-bug-report@…
[…]
4:53 AM Ticket #7378 (Crash deleting structure during session close) created by chimerax-bug-report@…
[…]
12:17 AM Ticket #7377 (Crash reporter: ~/Library/Logs/DiagnosticReports permission denied) created by hrb@…
[…]

Aug 2, 2022:

11:11 PM Ticket #7322 (PAE data not opened) closed by Tom Goddard
fixed: Fixed. I finally figured this out. A change to ChimeraX on July 8 to …
10:02 PM Ticket #7376 (Crash in fork) created by chimerax-bug-report@…
[…]
3:44 PM Ticket #7375 (Unknown crash after "volume level" command) created by chimerax-bug-report@…
[…]
2:10 PM Ticket #7374 (Crash destroying tool during garbage collection) created by simone.ritchey@…
[…]
11:56 AM Ticket #7369 ("close" fails to close models in certain situations) closed by Eric Pettersen
fixed: Objects.invert() was failing to account for pseudobond groups. Fix: …
11:51 AM Ticket #7373 (Make segmentations overlap DICOM volumes properly) created by Zach Pearson
It took forever to figure out how to create a segmentation, and to my …
10:21 AM 2022-7-28 edited by Tom Goddard
(diff)
10:21 AM 2022-8-4 created by Tom Goddard
10:19 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:10 AM Ticket #7372 (Unknown crash) closed by Eric Pettersen
can't reproduce: Was using 8.4GB at the time
10:06 AM Ticket #7370 (Problem reading IMOD file) closed by Tom Goddard
duplicate: Fixed 7 months ago. Ticket #5892.
8:14 AM Ticket #7368 (Crash handling symmetry) closed by Tristan Croll
duplicate: Back in the system. Thanks Scooter!
6:34 AM Ticket #7372 (Unknown crash) created by chimerax-bug-report@…
[…]
3:43 AM Ticket #7371 (Toolshed installing wrong version) created by neil.rzechorzek@…
[…]

Aug 1, 2022:

6:10 PM Ticket #7370 (Problem reading IMOD file) created by chimerax-bug-report@…
[…]
5:58 PM Ticket #7369 ("close" fails to close models in certain situations) created by Elaine Meng
With 1nwd open (NMR ensemble with metal coordination groups), "close …
5:40 PM Ticket #7367 (Session save: function 'set_pbgroup_py_instance' not found) closed by Eric Pettersen
duplicate: Hi Janice, Thanks for reporting this problem. It was fixed about a …
4:41 PM Ticket #7368 (Crash handling symmetry) created by chimerax-bug-report@…
[…]
2:02 PM Ticket #7367 (Session save: function 'set_pbgroup_py_instance' not found) created by jmreimer@…
[…]
1:06 PM Ticket #7366 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
can't reproduce: 1.3
11:25 AM Dev2022-8-1 edited by Tom Goddard
(diff)
11:23 AM Dev2022-8-1 edited by Tom Goddard
(diff)
11:18 AM Dev2022-8-1 edited by Tom Goddard
(diff)
11:09 AM Ticket #7366 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
10:56 AM Dev2022-7-25 edited by Tom Goddard
(diff)
10:56 AM Dev2022-7-26 edited by Tom Goddard
(diff)
10:55 AM Dev2022-8-1 edited by Tom Goddard
(diff)
10:55 AM Dev2022-8-1 created by Tom Goddard
10:51 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:51 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:47 AM Ticket #7365 (Crash in garbage collection during new object allocation) closed by Eric Pettersen
duplicate: Hi Soneya, Thanks for reporting this problem. Please upgrade to the …
10:41 AM Ticket #7364 (Draw status line: Attempt to retrieve context when no valid context) closed by Tom Goddard
can't reproduce: Status line redraw on expose event, no valid OpenGL context. Have …
10:33 AM Ticket #7363 (Crash in custom bundle initialization) closed by Eric Pettersen
can't reproduce: Without access to this "Wiggle" bundle source, I don't know that …
10:26 AM Ticket #7361 (Crash using File→Open on Windows) closed by Eric Pettersen
can't reproduce: 1.3
9:47 AM Ticket #7357 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: Same as #7356, same reporter.
9:46 AM Ticket #7356 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: OpenGL error on expose event of status line. I guess it is related to …
9:40 AM Ticket #7355 (Save dead dock widget shown state in session) closed by Eric Pettersen
can't reproduce
9:36 AM Ticket #7351 (Restoring new session in old version) closed by Eric Pettersen
not a bug
9:29 AM Ticket #7349 (Crash in event loop) closed by Eric Pettersen
can't reproduce
9:27 AM Ticket #7348 (KeyError deleting 2D arrow) closed by Eric Pettersen
duplicate: Hi Eduardo, Thanks for reporting this problem. It was fixed about …
9:17 AM Ticket #7347 (Crash using File→Open on Windows) closed by Eric Pettersen
can't reproduce: 1.3
9:04 AM Ticket #7345 (Crash in event loop) closed by Eric Pettersen
can't reproduce
8:04 AM Ticket #7365 (Crash in garbage collection during new object allocation) created by soneya.majumdar@…
[…]
6:33 AM Ticket #7364 (Draw status line: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]

Jul 31, 2022:

7:23 PM Ticket #7363 (Crash in custom bundle initialization) created by chimerax-bug-report@…
[…]
9:32 AM Ticket #7362 (Side view not going away) created by Elaine Meng
[…] Screen Shot 2022-07-31 at 9.30.51 AM.png​
3:37 AM Ticket #7361 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]

Jul 30, 2022:

8:00 AM Ticket #7360 (Crash in atom-spec parser) created by samrmay@…
[…]

Jul 29, 2022:

5:12 PM Ticket #7359 (Implement Match→Align) created by isaphan@…
[…]
3:35 PM Ticket #7358 (Update AlphaFold database sequence searches for July 2022 release of ...) created by Tom Goddard
The EBI released an update to the AlphaFold database increasing from 1 …
2:12 PM Ticket #7357 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
2:12 PM Ticket #7356 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
2:02 PM Ticket #7355 (Save dead dock widget shown state in session) created by chimerax-bug-report@…
[…]
1:48 PM Ticket #7353 (AlphaFold Error Plot gui may fetch PAE with the wrong database version) closed by Tom Goddard
fixed: Fixed. I made the AlphaFold Error Plot tool look at the structure …
12:21 PM Ticket #7354 (AlphaFold database "version" number differs from "release" number ...) created by Tom Goddard
AlphaFold database has had 4 releases numbered 1,2,3,4 on their FAQ …
11:55 AM Ticket #7353 (AlphaFold Error Plot gui may fetch PAE with the wrong database version) created by goddard@…
[…]
11:45 AM Ticket #7352 (alphafold fetch command ignores version option when fetching PAE data) closed by Tom Goddard
fixed: Fixed. I also added a "version" option to the "alphafold pae" command …
11:39 AM Ticket #7336 (AlphaFold reporting old files) closed by Tom Goddard
fixed: Fixed. Does not require new ChimeraX since fix was in script fetched …
11:30 AM Ticket #7352 (alphafold fetch command ignores version option when fetching PAE data) created by goddard@…
[…]
11:26 AM Ticket #7351 (Restoring new session in old version) created by chimerax-bug-report@…
[…]
11:10 AM Ticket #7350 (AlphaFold PAE domains divide by zero with AlphaFold database version 3) closed by Tom Goddard
fixed: Fixed. Made minimum PAE value 0.2 when computing domains.
10:49 AM Ticket #7350 (AlphaFold PAE domains divide by zero with AlphaFold database version 3) created by goddard@…
[…]
7:19 AM Ticket #7349 (Crash in event loop) created by chimerax-bug-report@…
[…]
7:18 AM Ticket #7348 (KeyError deleting 2D arrow) created by edoardo.dimprima@…
[…]
4:19 AM Ticket #7347 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
2:23 AM Ticket #7346 (Make alphafold fetch and pae commands work with version 3 of the ...) created by Tristan Croll
[…] alphafold.diff​

Jul 28, 2022:

11:12 PM Ticket #7345 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:16 PM Ticket #7344 (MemoryError saving session) created by chimerax-bug-report@…
[…]
6:05 PM 2022-7-28 edited by Greg Couch
(diff)
5:15 PM Ticket #7343 (Avoid pages of intimidating orange warning text on Toolshed install) created by goddard@…
[…]
5:01 PM Ticket #7337 (Selection demotion: Values array length does not match objects array length) closed by Tom Goddard
fixed: Fixed. If the number of atoms has changed the select up/down will …
4:43 PM Ticket #7341 (Crash importing numpy) closed by Tom Goddard
can't reproduce: No clues. Unlikely that numpy was the actual cause of the crash. …
3:43 PM Ticket #4749 (Specify first, last, skip when reading MD frames) closed by Eric Pettersen
fixed: Available as start/end/skip keywords
3:41 PM Ticket #5874 (Renumber residues) closed by Eric Pettersen
fixed: Command and tool available in current daily builds.
3:39 PM Ticket #3197 (command to change chain IDs) closed by Eric Pettersen
fixed: Command and tool available in current daily builds.
2:00 PM Ticket #7338 (Volume histogram: cannot convert float NaN to integer) closed by Tom Goddard
nonchimerax: It looks like the hdf data file opened contained NaN values. …
1:46 PM Ticket #7340 (initial 'visibility false' not honored for 2D arrow) closed by Eric Pettersen
fixed
1:14 PM Ticket #7342 (Axes/Planes/Centroids tool) created by Eric Pettersen
ticket created for purposed of milestoning
12:32 PM 2022-7-28 edited by Tom Goddard
(diff)
10:57 AM Ticket #7341 (Crash importing numpy) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #7340 (initial 'visibility false' not honored for 2D arrow) created by Elaine Meng
As per summary
9:09 AM Ticket #7339 (Crash in event loop) closed by Eric Pettersen
can't reproduce: Had just opened a session; was using 15GB at the time.
6:04 AM Ticket #7339 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:28 AM Ticket #7338 (Volume histogram: cannot convert float NaN to integer) created by chimerax-bug-report@…
[…]

Jul 27, 2022:

9:54 PM Ticket #7337 (Selection demotion: Values array length does not match objects array length) created by chimerax-bug-report@…
[…]
2:28 PM Ticket #7335 (Crash showing Rapid Access at startup) closed by Eric Pettersen
can't reproduce
2:24 PM Ticket #7336 (AlphaFold reporting old files) created by anthony.morgan@…
[…]
12:07 PM Ticket #7335 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
11:56 AM Ticket #7334 (Add command option to fitmap to write fit positions and metrics to a ...) closed by Tom Goddard
fixed: Done. I added a logFits option to the fitmap command that takes a …
11:49 AM Ticket #7334 (Add command option to fitmap to write fit positions and metrics to a ...) created by christian.tueting@…
Begin forwarded message: From: Christian Tüting via ChimeraX-users …
1:50 AM Ticket #7333 (Problem confirming SSL certificate for PyPi) created by t-2438@…
[…]

Jul 26, 2022:

7:30 PM Ticket #7332 (Gaussian molecular surface selection outline not shown) closed by Tom Goddard
fixed: Fixed. Surface code did not correctly display highlight if surface …
4:33 PM Ticket #7328 (Mouse select of low res molecular surface does not select it) closed by Tom Goddard
fixed: I made a separate ticket #7332 for Gaussian surfaces not showing a …
4:32 PM Ticket #7332 (Gaussian molecular surface selection outline not shown) created by goddard@…
[…]
10:14 AM 2022-7-21 edited by Tom Goddard
(diff)
10:13 AM 2022-7-28 created by Tom Goddard
10:12 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:53 AM Dev2022-7-26 created by Tom Goddard
9:45 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:28 AM Ticket #7330 (Crash during fork) closed by Eric Pettersen
can't reproduce: Hi Margot, Thank for reporting this problem. ChimeraX 1.3 and 1.4 …
9:17 AM Ticket #7329 (Volume Viewer after session restore: wrapped C/C++ object of type ...) closed by Eric Pettersen
duplicate: Duplicate of #7103
9:04 AM Ticket #7331 (Opening ORCA output file: could not broadcast input array) created by demyan.prokopchuk@…
[…] 16101896_MnCO3_tBuNHC_Ph_THF_optfreq.out​
4:35 AM Ticket #7330 (Crash during fork) created by scheffer@…
[…]

Jul 25, 2022:

6:36 PM Ticket #7329 (Volume Viewer after session restore: wrapped C/C++ object of type ...) created by chimerax-bug-report@…
[…]
4:22 PM Ticket #7314 (Crash in mapFromGlobal(QCursor.pos())) closed by Tom Goddard
can't reproduce: Seems like a Qt 6 bug.
4:20 PM Ticket #7313 (Graphics crash, macOS 12.3.1, Intel Iris Graphics 6100) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
3:48 PM Ticket #7328 (Mouse select of low res molecular surface does not select it) created by goddard@…
[…]
3:44 PM Ticket #7325 (Update surface selection: index is out of bounds for axis) closed by Tom Goddard
fixed: Fixed. Use no vertex to atom map if surface geometry was replaced by …
3:07 PM Dev2022-7-25 edited by Tom Goddard
(diff)
3:00 PM Dev2022-7-25 created by Tom Goddard
2:52 PM DeveloperMeetings edited by Tom Goddard
(diff)
10:51 AM Ticket #7320 (Crash creating QWebEngineProfile at startup) closed by Tom Goddard
can't reproduce: This ChimeraX crash seems to be a bug in the Qt window toolkit. We …
10:48 AM Ticket #7323 (Graphics crash, macOS 11.6.7, Intel Iris Plus Graphics 650) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
9:59 AM Ticket #7327 (Index error opening regular PDB in MD Viewer) closed by Eric Pettersen
limitation
9:57 AM Ticket #7326 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
can't reproduce: Hi Julia, Thanks for reporting this problem. We believe it is fixed …
9:45 AM Ticket #7324 (QWebEngine crash: Calling windowShouldClose: on the delegate for the ...) closed by Eric Pettersen
can't reproduce: Hi Carina, I'm not certain this will help but you shouldn't run …
9:34 AM Ticket #7321 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
can't reproduce: 1.3
8:11 AM Ticket #7327 (Index error opening regular PDB in MD Viewer) created by chimerax-bug-report@…
[…]
2:12 AM Ticket #7326 (Crash using File→Open on Windows and/or in return statement) created by julia.charl@…
[…]

Jul 24, 2022:

4:32 AM Ticket #7325 (Update surface selection: index is out of bounds for axis) created by chimerax-bug-report@…
[…]

Jul 23, 2022:

2:21 PM Ticket #7324 (QWebEngine crash: Calling windowShouldClose: on the delegate for the ...) created by chencarina21@…
[…]

Jul 22, 2022:

9:34 PM Dev2022-7-18 edited by Eric Pettersen
(diff)
9:33 PM Dev2022-7-18 edited by Eric Pettersen
(diff)
7:48 AM Ticket #7323 (Graphics crash, macOS 11.6.7, Intel Iris Plus Graphics 650) created by chimerax-bug-report@…
[…]
6:14 AM Ticket #7322 (PAE data not opened) created by frauenstein@…
[…]

Jul 21, 2022:

11:21 PM Ticket #7321 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:27 PM Ticket #7320 (Crash creating QWebEngineProfile at startup) created by dmontagutgue@…
[…]
1:17 PM Ticket #7315 (PDBio.cpp buffer overflow) closed by Eric Pettersen
fixed: Oooh, that _is_ nice. I didn't allocate space for the '\0' terminator …
1:12 PM Ticket #7318 (Build Structure: 'possible_name' referenced before assignment) closed by Eric Pettersen
fixed: Fix: …
12:20 PM NIAID2022 edited by Elaine Meng
(diff)
11:53 AM Ticket #7077 (Remove distutils) closed by Zach Pearson
fixed: A [​https://github.com/RBVI/ChimeraX/search?q=distutils&type=commits …
10:11 AM Ticket #7316 (app vs. installer) closed by Eric Pettersen
not a bug: Hi Runrun, When you download ChimeraX for a Mac you get a .dmg file. …
5:39 AM Ticket #7319 (Crash showing Rapid Access at startup) created by chkashif987@…
[…]
2:25 AM Ticket #7318 (Build Structure: 'possible_name' referenced before assignment) created by chimerax-bug-report@…
[…]

Jul 20, 2022:

5:43 PM Ticket #7317 (On Mac at exit "Persistent UI failed to open file window_1.data") closed by Tom Goddard
can't reproduce: Did not reproduce on second try running same ChimeraX on same machine …
5:26 PM Ticket #7317 (On Mac at exit "Persistent UI failed to open file window_1.data") created by goddard@…
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5:10 PM Ticket #7316 (app vs. installer) created by Runrun.Wu@…
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5:07 PM Ticket #7315 (PDBio.cpp buffer overflow) created by Tom Goddard
Noticed this nice warning on the Mac M1 build output. …
4:57 PM Ticket #7314 (Crash in mapFromGlobal(QCursor.pos())) created by chimerax-bug-report@…
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2:51 PM Ticket #7313 (Graphics crash, macOS 12.3.1, Intel Iris Graphics 6100) created by chimerax-bug-report@…
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11:13 AM Ticket #7312 (Crash using File→Open on Windows) closed by Eric Pettersen
can't reproduce: 1.3
10:27 AM Ticket #7311 (Many startup errors) closed by Zach Pearson
fixed: Reverted the change but noted that MouseModes has a silent dependency …
9:52 AM Ticket #7306 (Inadequate OpenGL despite latest graphics driver) closed by Tom Goddard
nonchimerax: Unfortunately the latest graphics driver sometimes has bugs in it. …
9:48 AM Ticket #7312 (Crash using File→Open on Windows) created by chimerax-bug-report@…
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9:26 AM Ticket #7310 (~tile / tile off not in 1.3?) closed by Elaine Meng
not a bug: As you suspected, version 1.3 does not have "tile off" -- if you look …