Timeline



Jul 23, 2026: Today

1:48 PM Ticket #19894 ("align axis" command) closed by Eric Pettersen
fixed: Implemented as "axis align" command in current daily build.
12:17 PM Ticket #20788 (Crash handling event) closed by Tom Goddard
limitation: Looks like the user may have run ChimeraX directly from the DMG and …
11:52 AM Ticket #20783 (ViewDock opening a swissdock file: not enough values to unpack ...) closed by Eric Pettersen
can't reproduce
11:50 AM Ticket #20781 (H-Bonds: acc_phi_psi() bad number of arguments) closed by Eric Pettersen
not a bug: Hi, Your SIRT1_clean.pdb file produced a structure with incorrect …
11:43 AM Ticket #20779 (KVFinder on old MacOS) closed by Eric Pettersen
limitation: Hi Stuti, Unfortunately, the underlying pyKVFinder program that …
11:08 AM Ticket #20789 (Suppress "GBM is not supported..." startup Qt message on Linux) closed by Tom Goddard
fixed: Fixed. We already had a list of about 8 Qt messages that we suppress …
10:57 AM Ticket #20789 (Suppress "GBM is not supported..." startup Qt message on Linux) created by goddard@…
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3:15 AM Ticket #20788 (Crash handling event) created by chimerax-bug-report@…
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Jul 22, 2026: Yesterday

6:28 PM ChangeLog edited by Tom Goddard
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6:23 PM ChangeLog edited by Tom Goddard
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6:21 PM ChangeLog edited by Tom Goddard
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6:18 PM Ticket #20787 (Add alphafold fetch for mutation scores sequences) closed by Tom Goddard
fixed: Done. If the mutation set is fetched from MaveDB it usually has a …
5:48 PM Ticket #20787 (Add alphafold fetch for mutation scores sequences) created by Tom Goddard
Add a button to the Mutation Scores panel to fetch an AlphaFold …
5:05 PM Ticket #20786 (Added fetching of MaveDB mutation data) closed by Tom Goddard
fixed: Done. MaveDB entry identifiers are 00000001, 00000002, .... I allow …
4:48 PM Ticket #20786 (Added fetching of MaveDB mutation data) created by Tom Goddard
Allow fetching mutation score data from the Multiplexed Assays of …
4:43 PM Ticket #20785 (Allow coloring structure at residues with uniprot variant mutations ...) closed by Tom Goddard
fixed: Done. I added a mutationscores merge command and also added an …
4:02 PM Ticket #20785 (Allow coloring structure at residues with uniprot variant mutations ...) created by Tom Goddard
I'd like to be able to look at deep mutational scan scores for just …
3:51 PM Ticket #20142 (Make a mutation score heatmap GUI) closed by Tom Goddard
fixed: Done. The heatmaps are reasonably usable now. If more improvements …
3:49 PM Ticket #19403 (Add structure coloring controls to mutation scores scatter plot) closed by Tom Goddard
fixed: Done. The mutation score ranges option was documented by Elaine. All …
3:43 PM Ticket #20597 (Opening mutation score .csv file does not show the scores in the order ...) closed by Tom Goddard
fixed: Fixed. I made the scores appear in alphabetical order.
3:40 PM Ticket #20784 (OpenFold prediction fails if model parameters did not download during ...) created by Tom Goddard
In ticket #20783 the anonymous user tries to run several OpenFold …
1:58 PM ChangeLog edited by Eric Pettersen
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1:58 PM ChangeLog edited by Eric Pettersen
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1:58 PM ChangeLog edited by Eric Pettersen
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1:57 PM ChangeLog edited by Eric Pettersen
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12:22 PM Ticket #20783 (ViewDock opening a swissdock file: not enough values to unpack ...) created by chimerax-bug-report@…
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11:10 AM Ticket #20782 (Python shell debugger warning) closed by Tom Goddard
not a bug
11:03 AM Ticket #20780 (H-Bonds: acc_phi_psi() bad number of arguments) closed by Tom Goddard
duplicate: Same as #20781
11:01 AM Ticket #20777 (KVFinder on old MacOS) closed by Tom Goddard
duplicate: Same as #20779
8:18 AM Ticket #20782 (Python shell debugger warning) created by alexandra.zahradnikova@…
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3:14 AM Ticket #20781 (H-Bonds: acc_phi_psi() bad number of arguments) created by shreyasukar@…
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3:13 AM Ticket #20780 (H-Bonds: acc_phi_psi() bad number of arguments) created by chimerax-bug-report@…
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Jul 21, 2026:

7:47 AM Ticket #20779 (KVFinder on old MacOS) created by stuti_sharma@…
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12:47 AM Ticket #20778 (pyKVFinder: KeyError: 'KAA') created by aleksandr.kharchenko@…
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Jul 20, 2026:

6:16 PM Ticket #20768 (Session save failure) closed by Eric Pettersen
can't reproduce: Hi Lydia, Thanks for reporting this problem and providing the session …
4:12 PM DeveloperMeetings edited by Tom Goddard
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4:10 PM DeveloperMeetings edited by Tom Goddard
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4:10 PM Dev2026-07-20 edited by Tom Goddard
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3:59 PM Ticket #20335 (Python 3.14 changes refcount semantics) closed by Tom Goddard
fixed: Fixed. Only the geometry place.py use of getrefcount() needed fixing. …
3:02 PM Dev2026-07-20 created by Tom Goddard
3:01 PM DeveloperMeetings edited by Tom Goddard
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12:10 PM Ticket #20773 (Crash in NSAccessibility routines in Qt 6.10.2 and ChimeraX 1.12) closed by Tom Goddard
can't reproduce: I think this the first crash report in Mac accessibility routines in …
11:58 AM Ticket #20777 (KVFinder on old MacOS) created by chimerax-bug-report@…
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10:36 AM Ticket #20776 (Fetch identifier) closed by Eric Pettersen
not a bug: Hi Thu, P0CE95 is not a PDB identifier. As the error message says, …
10:28 AM Ticket #20775 (KVFinder on old MacOS) closed by Eric Pettersen
duplicate
10:20 AM Ticket #20772 (H-Bonds: More than 2 coplanar positions specified) closed by Eric Pettersen
can't reproduce
10:19 AM Ticket #20771 (Minimize: KeyError: 'OP3') closed by Eric Pettersen
can't reproduce
9:08 AM Ticket #20776 (Fetch identifier) created by nguy2883@…
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8:59 AM Ticket #20775 (KVFinder on old MacOS) created by chimerax-bug-report@…
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Jul 19, 2026:

6:25 PM Ticket #20774 (ISOLDLE: validation tab refers to deleted residue) created by john.heumann@…
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8:27 AM Ticket #20773 (Crash in NSAccessibility routines in Qt 6.10.2 and ChimeraX 1.12) created by chimerax-bug-report@…
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