Changes between Initial Version and Version 1 of Ticket #20474


Ignore:
Timestamp:
Jun 9, 2026, 9:16:11 AM (4 weeks ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #20474

    • Property Component Unassigned → Graphics
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → glClear: invalid framebuffer operation on statusbar expose

  • Ticket #20474 – Description

    initial v1  
    28652865> close #15
    28662866
    2867 > hide #!1 models
    2868 
    2869 Traceback (most recent call last): 
    2870 File
    2871 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2872 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    2873 self.status(self._last_message, self._last_color) 
    2874 File
    2875 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2876 packages/chimerax/ui/statusbar.py", line 164, in status 
    2877 r.draw_background() 
    2878 File
    2879 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2880 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    2881 GL.glClear(flags) 
    2882 File "src/errorchecker.pyx", line 59, in
    2883 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    2884 OpenGL.error.GLError: GLError( 
    2885 err = 1286, 
    2886 description = b'invalid framebuffer operation', 
    2887 baseOperation = glClear, 
    2888 cArguments = (16640,) 
    2889 ) 
    2890  
    2891 OpenGL.error.GLError: GLError( 
    2892 err = 1286, 
    2893 description = b'invalid framebuffer operation', 
    2894 baseOperation = glClear, 
    2895 cArguments = (16640,) 
    2896 ) 
    2897  
    2898 File "src/errorchecker.pyx", line 59, in
    2899 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    2900  
    2901 See log for complete Python traceback. 
    2902  
    2903 Traceback (most recent call last): 
    2904 File
    2905 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2906 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    2907 self.status(self._last_message, self._last_color) 
    2908 File
    2909 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2910 packages/chimerax/ui/statusbar.py", line 164, in status 
    2911 r.draw_background() 
    2912 File
    2913 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2914 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    2915 GL.glClear(flags) 
    2916 File "src/errorchecker.pyx", line 59, in
    2917 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    2918 OpenGL.error.GLError: GLError( 
    2919 err = 1286, 
    2920 description = b'invalid framebuffer operation', 
    2921 baseOperation = glClear, 
    2922 cArguments = (16640,) 
    2923 ) 
    2924  
    2925 OpenGL.error.GLError: GLError( 
    2926 err = 1286, 
    2927 description = b'invalid framebuffer operation', 
    2928 baseOperation = glClear, 
    2929 cArguments = (16640,) 
    2930 ) 
    2931  
    2932 File "src/errorchecker.pyx", line 59, in
    2933 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    2934  
    2935 See log for complete Python traceback. 
    2936  
    2937 Traceback (most recent call last): 
    2938 File
    2939 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2940 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    2941 self.status(self._last_message, self._last_color) 
    2942 File
    2943 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2944 packages/chimerax/ui/statusbar.py", line 164, in status 
    2945 r.draw_background() 
    2946 File
    2947 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2948 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    2949 GL.glClear(flags) 
    2950 File "src/errorchecker.pyx", line 59, in
    2951 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    2952 OpenGL.error.GLError: GLError( 
    2953 err = 1286, 
    2954 description = b'invalid framebuffer operation', 
    2955 baseOperation = glClear, 
    2956 cArguments = (16640,) 
    2957 ) 
    2958  
    2959 OpenGL.error.GLError: GLError( 
    2960 err = 1286, 
    2961 description = b'invalid framebuffer operation', 
    2962 baseOperation = glClear, 
    2963 cArguments = (16640,) 
    2964 ) 
    2965  
    2966 File "src/errorchecker.pyx", line 59, in
    2967 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    2968  
    2969 See log for complete Python traceback. 
    2970  
    2971 Traceback (most recent call last): 
    2972 File
    2973 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2974 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    2975 self.status(self._last_message, self._last_color) 
    2976 File
    2977 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2978 packages/chimerax/ui/statusbar.py", line 164, in status 
    2979 r.draw_background() 
    2980 File
    2981 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    2982 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    2983 GL.glClear(flags) 
    2984 File "src/errorchecker.pyx", line 59, in
    2985 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    2986 OpenGL.error.GLError: GLError( 
    2987 err = 1286, 
    2988 description = b'invalid framebuffer operation', 
    2989 baseOperation = glClear, 
    2990 cArguments = (16640,) 
    2991 ) 
    2992  
    2993 OpenGL.error.GLError: GLError( 
    2994 err = 1286, 
    2995 description = b'invalid framebuffer operation', 
    2996 baseOperation = glClear, 
    2997 cArguments = (16640,) 
    2998 ) 
    2999  
    3000 File "src/errorchecker.pyx", line 59, in
    3001 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3002  
    3003 See log for complete Python traceback. 
    3004  
    3005 Traceback (most recent call last): 
    3006 File
    3007 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3008 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3009 self.status(self._last_message, self._last_color) 
    3010 File
    3011 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3012 packages/chimerax/ui/statusbar.py", line 164, in status 
    3013 r.draw_background() 
    3014 File
    3015 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3016 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3017 GL.glClear(flags) 
    3018 File "src/errorchecker.pyx", line 59, in
    3019 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3020 OpenGL.error.GLError: GLError( 
    3021 err = 1286, 
    3022 description = b'invalid framebuffer operation', 
    3023 baseOperation = glClear, 
    3024 cArguments = (16640,) 
    3025 ) 
    3026  
    3027 OpenGL.error.GLError: GLError( 
    3028 err = 1286, 
    3029 description = b'invalid framebuffer operation', 
    3030 baseOperation = glClear, 
    3031 cArguments = (16640,) 
    3032 ) 
    3033  
    3034 File "src/errorchecker.pyx", line 59, in
    3035 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3036  
    3037 See log for complete Python traceback. 
    3038  
    3039 Traceback (most recent call last): 
    3040 File
    3041 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3042 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3043 self.status(self._last_message, self._last_color) 
    3044 File
    3045 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3046 packages/chimerax/ui/statusbar.py", line 164, in status 
    3047 r.draw_background() 
    3048 File
    3049 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3050 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3051 GL.glClear(flags) 
    3052 File "src/errorchecker.pyx", line 59, in
    3053 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3054 OpenGL.error.GLError: GLError( 
    3055 err = 1286, 
    3056 description = b'invalid framebuffer operation', 
    3057 baseOperation = glClear, 
    3058 cArguments = (16640,) 
    3059 ) 
    3060  
    3061 OpenGL.error.GLError: GLError( 
    3062 err = 1286, 
    3063 description = b'invalid framebuffer operation', 
    3064 baseOperation = glClear, 
    3065 cArguments = (16640,) 
    3066 ) 
    3067  
    3068 File "src/errorchecker.pyx", line 59, in
    3069 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3070  
    3071 See log for complete Python traceback. 
    3072  
    3073 Traceback (most recent call last): 
    3074 File
    3075 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3076 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3077 self.status(self._last_message, self._last_color) 
    3078 File
    3079 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3080 packages/chimerax/ui/statusbar.py", line 164, in status 
    3081 r.draw_background() 
    3082 File
    3083 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3084 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3085 GL.glClear(flags) 
    3086 File "src/errorchecker.pyx", line 59, in
    3087 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3088 OpenGL.error.GLError: GLError( 
    3089 err = 1286, 
    3090 description = b'invalid framebuffer operation', 
    3091 baseOperation = glClear, 
    3092 cArguments = (16640,) 
    3093 ) 
    3094  
    3095 OpenGL.error.GLError: GLError( 
    3096 err = 1286, 
    3097 description = b'invalid framebuffer operation', 
    3098 baseOperation = glClear, 
    3099 cArguments = (16640,) 
    3100 ) 
    3101  
    3102 File "src/errorchecker.pyx", line 59, in
    3103 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3104  
    3105 See log for complete Python traceback. 
    3106  
    3107 Traceback (most recent call last): 
    3108 File
    3109 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3110 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3111 self.status(self._last_message, self._last_color) 
    3112 File
    3113 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3114 packages/chimerax/ui/statusbar.py", line 164, in status 
    3115 r.draw_background() 
    3116 File
    3117 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3118 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3119 GL.glClear(flags) 
    3120 File "src/errorchecker.pyx", line 59, in
    3121 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3122 OpenGL.error.GLError: GLError( 
    3123 err = 1286, 
    3124 description = b'invalid framebuffer operation', 
    3125 baseOperation = glClear, 
    3126 cArguments = (16640,) 
    3127 ) 
    3128  
    3129 OpenGL.error.GLError: GLError( 
    3130 err = 1286, 
    3131 description = b'invalid framebuffer operation', 
    3132 baseOperation = glClear, 
    3133 cArguments = (16640,) 
    3134 ) 
    3135  
    3136 File "src/errorchecker.pyx", line 59, in
    3137 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3138  
    3139 See log for complete Python traceback. 
    3140  
    3141 Traceback (most recent call last): 
    3142 File
    3143 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3144 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3145 self.status(self._last_message, self._last_color) 
    3146 File
    3147 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3148 packages/chimerax/ui/statusbar.py", line 164, in status 
    3149 r.draw_background() 
    3150 File
    3151 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3152 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3153 GL.glClear(flags) 
    3154 File "src/errorchecker.pyx", line 59, in
    3155 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3156 OpenGL.error.GLError: GLError( 
    3157 err = 1286, 
    3158 description = b'invalid framebuffer operation', 
    3159 baseOperation = glClear, 
    3160 cArguments = (16640,) 
    3161 ) 
    3162  
    3163 OpenGL.error.GLError: GLError( 
    3164 err = 1286, 
    3165 description = b'invalid framebuffer operation', 
    3166 baseOperation = glClear, 
    3167 cArguments = (16640,) 
    3168 ) 
    3169  
    3170 File "src/errorchecker.pyx", line 59, in
    3171 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3172  
    3173 See log for complete Python traceback. 
    3174  
    3175 
    3176 > hide #!14 models
    3177 
    3178 > hide #19 models
    3179 
    3180 > select subtract #14
    3181 
    3182 Nothing selected 
    3183 Traceback (most recent call last): 
    3184 File
    3185 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3186 packages/chimerax/model_panel/tool.py", line 480, in _tree_change_cb 
    3187 run(self.session, "select " + mode + " #" + model.id_string) 
    3188 File
    3189 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3190 packages/chimerax/core/commands/run.py", line 49, in run 
    3191 results = command.run(text, log=log, return_json=return_json) 
    3192 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3193 File
    3194 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3195 packages/chimerax/core/commands/cli.py", line 3237, in run 
    3196 result = ci.function(session, **kw_args) 
    3197 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3198 File
    3199 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3200 packages/chimerax/std_commands/select.py", line 132, in select_subtract 
    3201 report_selection(session) 
    3202 File
    3203 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3204 packages/chimerax/std_commands/select.py", line 192, in report_selection 
    3205 session.logger.status(', '.join(lines) + ' selected', log = True) 
    3206 File
    3207 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3208 packages/chimerax/core/logger.py", line 522, in status 
    3209 StatusLogger.status(self, msg, **kw) 
    3210 File
    3211 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3212 packages/chimerax/core/logger.py", line 220, in status 
    3213 if l.status(msg, color, secondary) and getattr( 
    3214 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3215 File
    3216 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3217 packages/chimerax/ui/gui.py", line 1133, in status 
    3218 sbar.status(msg, color, secondary) 
    3219 File
    3220 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3221 packages/chimerax/ui/statusbar.py", line 164, in status 
    3222 r.draw_background() 
    3223 File
    3224 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3225 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3226 GL.glClear(flags) 
    3227 File "src/errorchecker.pyx", line 59, in
    3228 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3229 OpenGL.error.GLError: GLError( 
    3230 err = 1286, 
    3231 description = b'invalid framebuffer operation', 
    3232 baseOperation = glClear, 
    3233 cArguments = (16640,) 
    3234 ) 
    3235  
    3236 OpenGL.error.GLError: GLError( 
    3237 err = 1286, 
    3238 description = b'invalid framebuffer operation', 
    3239 baseOperation = glClear, 
    3240 cArguments = (16640,) 
    3241 ) 
    3242  
    3243 File "src/errorchecker.pyx", line 59, in
    3244 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3245  
    3246 See log for complete Python traceback. 
    3247  
    3248 
    3249 > open /Users/a13583/Downloads/cryosparc_P121_J1409_002_volume_map_sharp.mrc
    3250 
    3251 Traceback (most recent call last): 
    3252 File
    3253 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3254 packages/chimerax/ui/graphics.py", line 54, in event 
    3255 if self.handle_drag_and_drop(event): 
    3256 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3257 File
    3258 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3259 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    3260 mw.dropEvent(event) 
    3261 File
    3262 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3263 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    3264 _open_dropped_file(self.session, p) 
    3265 File
    3266 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3267 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    3268 run(session, 'open %s' % FileNameArg.unparse(path)) 
    3269 File
    3270 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3271 packages/chimerax/core/commands/run.py", line 49, in run 
    3272 results = command.run(text, log=log, return_json=return_json) 
    3273 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3274 File
    3275 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3276 packages/chimerax/core/commands/cli.py", line 3237, in run 
    3277 result = ci.function(session, **kw_args) 
    3278 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3279 File
    3280 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3281 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    3282 models = Command(session, registry=registry).run(provider_cmd_text,
    3283 log=log)[0] 
    3284 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3285 File
    3286 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3287 packages/chimerax/core/commands/cli.py", line 3237, in run 
    3288 result = ci.function(session, **kw_args) 
    3289 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3290 File
    3291 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3292 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    3293 models, status = collated_open(session, None, paths, data_format, _add_models,
    3294 log_errors, 
    3295 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3296 File
    3297 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3298 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    3299 return remember_data_format() 
    3300 ^^^^^^^^^^^^^^^^^^^^^^ 
    3301 File
    3302 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3303 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    3304 models, status = func(*func_args, **func_kw) 
    3305 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3306 File
    3307 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3308 packages/chimerax/map/__init__.py", line 183, in open 
    3309 return open_map(session, path, format=_name, **kw) 
    3310 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3311 File
    3312 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3313 packages/chimerax/map/volume.py", line 3752, in open_map 
    3314 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    3315 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3316 File
    3317 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3318 packages/chimerax/map/volume.py", line 3854, in open_grids 
    3319 v.update_drawings() 
    3320 File
    3321 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3322 packages/chimerax/map/volume.py", line 825, in update_drawings 
    3323 levels, colors = self.initial_surface_levels() 
    3324 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3325 File
    3326 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3327 packages/chimerax/map/volume.py", line 626, in initial_surface_levels 
    3328 mstats = self.matrix_value_statistics() 
    3329 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3330 File
    3331 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3332 packages/chimerax/map/volume.py", line 1759, in matrix_value_statistics 
    3333 matrices = self.displayed_matrices(read_matrix) 
    3334 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3335 File
    3336 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3337 packages/chimerax/map/volume.py", line 1794, in displayed_matrices 
    3338 matrices.append(self.matrix(read_matrix)) 
    3339 ^^^^^^^^^^^^^^^^^^^^^^^^ 
    3340 File
    3341 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3342 packages/chimerax/map/volume.py", line 1277, in matrix 
    3343 m = self.region_matrix(r, read_matrix) 
    3344 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3345 File
    3346 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3347 packages/chimerax/map/volume.py", line 1301, in region_matrix 
    3348 m = d.matrix(origin, size, step, progress, from_cache_only) 
    3349 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3350 File
    3351 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3352 packages/chimerax/map_data/griddata.py", line 317, in matrix 
    3353 m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress) 
    3354 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3355 File
    3356 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3357 packages/chimerax/map_data/mrc/mrc_grid.py", line 50, in read_matrix 
    3358 m = self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress) 
    3359 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3360 File
    3361 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3362 packages/chimerax/map_data/mrc/mrc_format.py", line 287, in read_matrix 
    3363 matrix = read_array(self.path, self.data_offset, 
    3364 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3365 File
    3366 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3367 packages/chimerax/map_data/readarray.py", line 61, in read_array 
    3368 progress.plane((k-ko)//kstep) 
    3369 File
    3370 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3371 packages/chimerax/map_data/progress.py", line 114, in plane 
    3372 self.show_status(self.format % pct) 
    3373 File
    3374 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3375 packages/chimerax/map_data/progress.py", line 80, in show_status 
    3376 self.message(text) 
    3377 File
    3378 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3379 packages/chimerax/map_data/progress.py", line 57, in message 
    3380 log.status(text) 
    3381 File
    3382 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3383 packages/chimerax/core/logger.py", line 522, in status 
    3384 StatusLogger.status(self, msg, **kw) 
    3385 File
    3386 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3387 packages/chimerax/core/logger.py", line 220, in status 
    3388 if l.status(msg, color, secondary) and getattr( 
    3389 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    3390 File
    3391 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3392 packages/chimerax/ui/gui.py", line 1133, in status 
    3393 sbar.status(msg, color, secondary) 
    3394 File
    3395 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3396 packages/chimerax/ui/statusbar.py", line 164, in status 
    3397 r.draw_background() 
    3398 File
    3399 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3400 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3401 GL.glClear(flags) 
    3402 File "src/errorchecker.pyx", line 59, in
    3403 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3404 OpenGL.error.GLError: GLError( 
    3405 err = 1286, 
    3406 description = b'invalid framebuffer operation', 
    3407 baseOperation = glClear, 
    3408 cArguments = (16640,) 
    3409 ) 
    3410  
    3411 OpenGL.error.GLError: GLError( 
    3412 err = 1286, 
    3413 description = b'invalid framebuffer operation', 
    3414 baseOperation = glClear, 
    3415 cArguments = (16640,) 
    3416 ) 
    3417  
    3418 File "src/errorchecker.pyx", line 59, in
    3419 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3420  
    3421 See log for complete Python traceback. 
    3422  
    3423 Traceback (most recent call last): 
    3424 File
    3425 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3426 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3427 self.status(self._last_message, self._last_color) 
    3428 File
    3429 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3430 packages/chimerax/ui/statusbar.py", line 164, in status 
    3431 r.draw_background() 
    3432 File
    3433 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3434 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3435 GL.glClear(flags) 
    3436 File "src/errorchecker.pyx", line 59, in
    3437 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3438 OpenGL.error.GLError: GLError( 
    3439 err = 1286, 
    3440 description = b'invalid framebuffer operation', 
    3441 baseOperation = glClear, 
    3442 cArguments = (16640,) 
    3443 ) 
    3444  
    3445 OpenGL.error.GLError: GLError( 
    3446 err = 1286, 
    3447 description = b'invalid framebuffer operation', 
    3448 baseOperation = glClear, 
    3449 cArguments = (16640,) 
    3450 ) 
    3451  
    3452 File "src/errorchecker.pyx", line 59, in
    3453 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3454  
    3455 See log for complete Python traceback. 
    3456  
    3457 Traceback (most recent call last): 
    3458 File
    3459 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3460 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3461 self.status(self._last_message, self._last_color) 
    3462 File
    3463 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3464 packages/chimerax/ui/statusbar.py", line 164, in status 
    3465 r.draw_background() 
    3466 File
    3467 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3468 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3469 GL.glClear(flags) 
    3470 File "src/errorchecker.pyx", line 59, in
    3471 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3472 OpenGL.error.GLError: GLError( 
    3473 err = 1286, 
    3474 description = b'invalid framebuffer operation', 
    3475 baseOperation = glClear, 
    3476 cArguments = (16640,) 
    3477 ) 
    3478  
    3479 OpenGL.error.GLError: GLError( 
    3480 err = 1286, 
    3481 description = b'invalid framebuffer operation', 
    3482 baseOperation = glClear, 
    3483 cArguments = (16640,) 
    3484 ) 
    3485  
    3486 File "src/errorchecker.pyx", line 59, in
    3487 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3488  
    3489 See log for complete Python traceback. 
    3490  
    3491 Traceback (most recent call last): 
    3492 File
    3493 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3494 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3495 self.status(self._last_message, self._last_color) 
    3496 File
    3497 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3498 packages/chimerax/ui/statusbar.py", line 164, in status 
    3499 r.draw_background() 
    3500 File
    3501 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3502 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3503 GL.glClear(flags) 
    3504 File "src/errorchecker.pyx", line 59, in
    3505 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3506 OpenGL.error.GLError: GLError( 
    3507 err = 1286, 
    3508 description = b'invalid framebuffer operation', 
    3509 baseOperation = glClear, 
    3510 cArguments = (16640,) 
    3511 ) 
    3512  
    3513 OpenGL.error.GLError: GLError( 
    3514 err = 1286, 
    3515 description = b'invalid framebuffer operation', 
    3516 baseOperation = glClear, 
    3517 cArguments = (16640,) 
    3518 ) 
    3519  
    3520 File "src/errorchecker.pyx", line 59, in
    3521 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3522  
    3523 See log for complete Python traceback. 
    3524  
    3525 Traceback (most recent call last): 
    3526 File
    3527 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3528 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3529 self.status(self._last_message, self._last_color) 
    3530 File
    3531 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3532 packages/chimerax/ui/statusbar.py", line 164, in status 
    3533 r.draw_background() 
    3534 File
    3535 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3536 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3537 GL.glClear(flags) 
    3538 File "src/errorchecker.pyx", line 59, in
    3539 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3540 OpenGL.error.GLError: GLError( 
    3541 err = 1286, 
    3542 description = b'invalid framebuffer operation', 
    3543 baseOperation = glClear, 
    3544 cArguments = (16640,) 
    3545 ) 
    3546  
    3547 OpenGL.error.GLError: GLError( 
    3548 err = 1286, 
    3549 description = b'invalid framebuffer operation', 
    3550 baseOperation = glClear, 
    3551 cArguments = (16640,) 
    3552 ) 
    3553  
    3554 File "src/errorchecker.pyx", line 59, in
    3555 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3556  
    3557 See log for complete Python traceback. 
    3558  
    3559 Traceback (most recent call last): 
    3560 File
    3561 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3562 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3563 self.status(self._last_message, self._last_color) 
    3564 File
    3565 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3566 packages/chimerax/ui/statusbar.py", line 164, in status 
    3567 r.draw_background() 
    3568 File
    3569 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3570 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3571 GL.glClear(flags) 
    3572 File "src/errorchecker.pyx", line 59, in
    3573 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3574 OpenGL.error.GLError: GLError( 
    3575 err = 1286, 
    3576 description = b'invalid framebuffer operation', 
    3577 baseOperation = glClear, 
    3578 cArguments = (16640,) 
    3579 ) 
    3580  
    3581 OpenGL.error.GLError: GLError( 
    3582 err = 1286, 
    3583 description = b'invalid framebuffer operation', 
    3584 baseOperation = glClear, 
    3585 cArguments = (16640,) 
    3586 ) 
    3587  
    3588 File "src/errorchecker.pyx", line 59, in
    3589 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3590  
    3591 See log for complete Python traceback. 
    3592  
    3593 Traceback (most recent call last): 
    3594 File
    3595 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3596 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3597 self.status(self._last_message, self._last_color) 
    3598 File
    3599 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3600 packages/chimerax/ui/statusbar.py", line 164, in status 
    3601 r.draw_background() 
    3602 File
    3603 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3604 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3605 GL.glClear(flags) 
    3606 File "src/errorchecker.pyx", line 59, in
    3607 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3608 OpenGL.error.GLError: GLError( 
    3609 err = 1286, 
    3610 description = b'invalid framebuffer operation', 
    3611 baseOperation = glClear, 
    3612 cArguments = (16640,) 
    3613 ) 
    3614  
    3615 OpenGL.error.GLError: GLError( 
    3616 err = 1286, 
    3617 description = b'invalid framebuffer operation', 
    3618 baseOperation = glClear, 
    3619 cArguments = (16640,) 
    3620 ) 
    3621  
    3622 File "src/errorchecker.pyx", line 59, in
    3623 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3624  
    3625 See log for complete Python traceback. 
    3626  
    3627 Traceback (most recent call last): 
    3628 File
    3629 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3630 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3631 self.status(self._last_message, self._last_color) 
    3632 File
    3633 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3634 packages/chimerax/ui/statusbar.py", line 164, in status 
    3635 r.draw_background() 
    3636 File
    3637 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3638 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3639 GL.glClear(flags) 
    3640 File "src/errorchecker.pyx", line 59, in
    3641 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3642 OpenGL.error.GLError: GLError( 
    3643 err = 1286, 
    3644 description = b'invalid framebuffer operation', 
    3645 baseOperation = glClear, 
    3646 cArguments = (16640,) 
    3647 ) 
    3648  
    3649 OpenGL.error.GLError: GLError( 
    3650 err = 1286, 
    3651 description = b'invalid framebuffer operation', 
    3652 baseOperation = glClear, 
    3653 cArguments = (16640,) 
    3654 ) 
    3655  
    3656 File "src/errorchecker.pyx", line 59, in
    3657 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3658  
    3659 See log for complete Python traceback. 
    3660  
    3661 Traceback (most recent call last): 
    3662 File
    3663 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3664 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3665 self.status(self._last_message, self._last_color) 
    3666 File
    3667 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3668 packages/chimerax/ui/statusbar.py", line 164, in status 
    3669 r.draw_background() 
    3670 File
    3671 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3672 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3673 GL.glClear(flags) 
    3674 File "src/errorchecker.pyx", line 59, in
    3675 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3676 OpenGL.error.GLError: GLError( 
    3677 err = 1286, 
    3678 description = b'invalid framebuffer operation', 
    3679 baseOperation = glClear, 
    3680 cArguments = (16640,) 
    3681 ) 
    3682  
    3683 OpenGL.error.GLError: GLError( 
    3684 err = 1286, 
    3685 description = b'invalid framebuffer operation', 
    3686 baseOperation = glClear, 
    3687 cArguments = (16640,) 
    3688 ) 
    3689  
    3690 File "src/errorchecker.pyx", line 59, in
    3691 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3692  
    3693 See log for complete Python traceback. 
    3694  
    3695 Traceback (most recent call last): 
    3696 File
    3697 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3698 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3699 self.status(self._last_message, self._last_color) 
    3700 File
    3701 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3702 packages/chimerax/ui/statusbar.py", line 164, in status 
    3703 r.draw_background() 
    3704 File
    3705 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3706 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3707 GL.glClear(flags) 
    3708 File "src/errorchecker.pyx", line 59, in
    3709 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3710 OpenGL.error.GLError: GLError( 
    3711 err = 1286, 
    3712 description = b'invalid framebuffer operation', 
    3713 baseOperation = glClear, 
    3714 cArguments = (16640,) 
    3715 ) 
    3716  
    3717 OpenGL.error.GLError: GLError( 
    3718 err = 1286, 
    3719 description = b'invalid framebuffer operation', 
    3720 baseOperation = glClear, 
    3721 cArguments = (16640,) 
    3722 ) 
    3723  
    3724 File "src/errorchecker.pyx", line 59, in
    3725 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3726  
    3727 See log for complete Python traceback. 
    3728  
    3729 Traceback (most recent call last): 
    3730 File
    3731 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3732 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3733 self.status(self._last_message, self._last_color) 
    3734 File
    3735 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3736 packages/chimerax/ui/statusbar.py", line 164, in status 
    3737 r.draw_background() 
    3738 File
    3739 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3740 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3741 GL.glClear(flags) 
    3742 File "src/errorchecker.pyx", line 59, in
    3743 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3744 OpenGL.error.GLError: GLError( 
    3745 err = 1286, 
    3746 description = b'invalid framebuffer operation', 
    3747 baseOperation = glClear, 
    3748 cArguments = (16640,) 
    3749 ) 
    3750  
    3751 OpenGL.error.GLError: GLError( 
    3752 err = 1286, 
    3753 description = b'invalid framebuffer operation', 
    3754 baseOperation = glClear, 
    3755 cArguments = (16640,) 
    3756 ) 
    3757  
    3758 File "src/errorchecker.pyx", line 59, in
    3759 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3760  
    3761 See log for complete Python traceback. 
    3762  
    3763 Traceback (most recent call last): 
    3764 File
    3765 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3766 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3767 self.status(self._last_message, self._last_color) 
    3768 File
    3769 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3770 packages/chimerax/ui/statusbar.py", line 164, in status 
    3771 r.draw_background() 
    3772 File
    3773 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3774 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3775 GL.glClear(flags) 
    3776 File "src/errorchecker.pyx", line 59, in
    3777 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3778 OpenGL.error.GLError: GLError( 
    3779 err = 1286, 
    3780 description = b'invalid framebuffer operation', 
    3781 baseOperation = glClear, 
    3782 cArguments = (16640,) 
    3783 ) 
    3784  
    3785 OpenGL.error.GLError: GLError( 
    3786 err = 1286, 
    3787 description = b'invalid framebuffer operation', 
    3788 baseOperation = glClear, 
    3789 cArguments = (16640,) 
    3790 ) 
    3791  
    3792 File "src/errorchecker.pyx", line 59, in
    3793 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3794  
    3795 See log for complete Python traceback. 
    3796  
    3797 Traceback (most recent call last): 
    3798 File
    3799 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3800 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3801 self.status(self._last_message, self._last_color) 
    3802 File
    3803 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3804 packages/chimerax/ui/statusbar.py", line 164, in status 
    3805 r.draw_background() 
    3806 File
    3807 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3808 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3809 GL.glClear(flags) 
    3810 File "src/errorchecker.pyx", line 59, in
    3811 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3812 OpenGL.error.GLError: GLError( 
    3813 err = 1286, 
    3814 description = b'invalid framebuffer operation', 
    3815 baseOperation = glClear, 
    3816 cArguments = (16640,) 
    3817 ) 
    3818  
    3819 OpenGL.error.GLError: GLError( 
    3820 err = 1286, 
    3821 description = b'invalid framebuffer operation', 
    3822 baseOperation = glClear, 
    3823 cArguments = (16640,) 
    3824 ) 
    3825  
    3826 File "src/errorchecker.pyx", line 59, in
    3827 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3828  
    3829 See log for complete Python traceback. 
    3830  
    3831 Traceback (most recent call last): 
    3832 File
    3833 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3834 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3835 self.status(self._last_message, self._last_color) 
    3836 File
    3837 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3838 packages/chimerax/ui/statusbar.py", line 164, in status 
    3839 r.draw_background() 
    3840 File
    3841 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3842 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3843 GL.glClear(flags) 
    3844 File "src/errorchecker.pyx", line 59, in
    3845 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3846 OpenGL.error.GLError: GLError( 
    3847 err = 1286, 
    3848 description = b'invalid framebuffer operation', 
    3849 baseOperation = glClear, 
    3850 cArguments = (16640,) 
    3851 ) 
    3852  
    3853 OpenGL.error.GLError: GLError( 
    3854 err = 1286, 
    3855 description = b'invalid framebuffer operation', 
    3856 baseOperation = glClear, 
    3857 cArguments = (16640,) 
    3858 ) 
    3859  
    3860 File "src/errorchecker.pyx", line 59, in
    3861 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3862  
    3863 See log for complete Python traceback. 
    3864  
    3865 Traceback (most recent call last): 
    3866 File
    3867 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3868 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3869 self.status(self._last_message, self._last_color) 
    3870 File
    3871 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3872 packages/chimerax/ui/statusbar.py", line 164, in status 
    3873 r.draw_background() 
    3874 File
    3875 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3876 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3877 GL.glClear(flags) 
    3878 File "src/errorchecker.pyx", line 59, in
    3879 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3880 OpenGL.error.GLError: GLError( 
    3881 err = 1286, 
    3882 description = b'invalid framebuffer operation', 
    3883 baseOperation = glClear, 
    3884 cArguments = (16640,) 
    3885 ) 
    3886  
    3887 OpenGL.error.GLError: GLError( 
    3888 err = 1286, 
    3889 description = b'invalid framebuffer operation', 
    3890 baseOperation = glClear, 
    3891 cArguments = (16640,) 
    3892 ) 
    3893  
    3894 File "src/errorchecker.pyx", line 59, in
    3895 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3896  
    3897 See log for complete Python traceback. 
    3898  
    3899 Traceback (most recent call last): 
    3900 File
    3901 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3902 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3903 self.status(self._last_message, self._last_color) 
    3904 File
    3905 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3906 packages/chimerax/ui/statusbar.py", line 164, in status 
    3907 r.draw_background() 
    3908 File
    3909 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3910 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3911 GL.glClear(flags) 
    3912 File "src/errorchecker.pyx", line 59, in
    3913 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3914 OpenGL.error.GLError: GLError( 
    3915 err = 1286, 
    3916 description = b'invalid framebuffer operation', 
    3917 baseOperation = glClear, 
    3918 cArguments = (16640,) 
    3919 ) 
    3920  
    3921 OpenGL.error.GLError: GLError( 
    3922 err = 1286, 
    3923 description = b'invalid framebuffer operation', 
    3924 baseOperation = glClear, 
    3925 cArguments = (16640,) 
    3926 ) 
    3927  
    3928 File "src/errorchecker.pyx", line 59, in
    3929 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3930  
    3931 See log for complete Python traceback. 
    3932  
    3933 Traceback (most recent call last): 
    3934 File
    3935 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3936 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3937 self.status(self._last_message, self._last_color) 
    3938 File
    3939 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3940 packages/chimerax/ui/statusbar.py", line 164, in status 
    3941 r.draw_background() 
    3942 File
    3943 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3944 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3945 GL.glClear(flags) 
    3946 File "src/errorchecker.pyx", line 59, in
    3947 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3948 OpenGL.error.GLError: GLError( 
    3949 err = 1286, 
    3950 description = b'invalid framebuffer operation', 
    3951 baseOperation = glClear, 
    3952 cArguments = (16640,) 
    3953 ) 
    3954  
    3955 OpenGL.error.GLError: GLError( 
    3956 err = 1286, 
    3957 description = b'invalid framebuffer operation', 
    3958 baseOperation = glClear, 
    3959 cArguments = (16640,) 
    3960 ) 
    3961  
    3962 File "src/errorchecker.pyx", line 59, in
    3963 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3964  
    3965 See log for complete Python traceback. 
    3966  
    3967 Traceback (most recent call last): 
    3968 File
    3969 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3970 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    3971 self.status(self._last_message, self._last_color) 
    3972 File
    3973 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3974 packages/chimerax/ui/statusbar.py", line 164, in status 
    3975 r.draw_background() 
    3976 File
    3977 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    3978 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    3979 GL.glClear(flags) 
    3980 File "src/errorchecker.pyx", line 59, in
    3981 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3982 OpenGL.error.GLError: GLError( 
    3983 err = 1286, 
    3984 description = b'invalid framebuffer operation', 
    3985 baseOperation = glClear, 
    3986 cArguments = (16640,) 
    3987 ) 
    3988  
    3989 OpenGL.error.GLError: GLError( 
    3990 err = 1286, 
    3991 description = b'invalid framebuffer operation', 
    3992 baseOperation = glClear, 
    3993 cArguments = (16640,) 
    3994 ) 
    3995  
    3996 File "src/errorchecker.pyx", line 59, in
    3997 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    3998  
    3999 See log for complete Python traceback. 
    4000  
    4001 
    4002 > open /Users/a13583/Downloads/cryosparc_P121_J1409_002_volume_map_sharp.mrc
    4003 
    4004 Opened cryosparc_P121_J1409_002_volume_map_sharp.mrc as #15, grid size
    4005 384,384,384, pixel 1.2, shown at level 0.104, step 2, values float32 
    4006 Traceback (most recent call last): 
    4007 File
    4008 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4009 packages/chimerax/ui/graphics.py", line 54, in event 
    4010 if self.handle_drag_and_drop(event): 
    4011 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4012 File
    4013 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4014 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    4015 mw.dropEvent(event) 
    4016 File
    4017 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4018 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    4019 _open_dropped_file(self.session, p) 
    4020 File
    4021 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4022 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    4023 run(session, 'open %s' % FileNameArg.unparse(path)) 
    4024 File
    4025 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4026 packages/chimerax/core/commands/run.py", line 49, in run 
    4027 results = command.run(text, log=log, return_json=return_json) 
    4028 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4029 File
    4030 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4031 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4032 result = ci.function(session, **kw_args) 
    4033 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4034 File
    4035 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4036 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    4037 models = Command(session, registry=registry).run(provider_cmd_text,
    4038 log=log)[0] 
    4039 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4040 File
    4041 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4042 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4043 result = ci.function(session, **kw_args) 
    4044 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4045 File
    4046 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4047 packages/chimerax/open_command/cmd.py", line 326, in provider_open 
    4048 session.logger.status(status, log=status) 
    4049 File
    4050 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4051 packages/chimerax/core/logger.py", line 522, in status 
    4052 StatusLogger.status(self, msg, **kw) 
    4053 File
    4054 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4055 packages/chimerax/core/logger.py", line 220, in status 
    4056 if l.status(msg, color, secondary) and getattr( 
    4057 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4058 File
    4059 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4060 packages/chimerax/ui/gui.py", line 1133, in status 
    4061 sbar.status(msg, color, secondary) 
    4062 File
    4063 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4064 packages/chimerax/ui/statusbar.py", line 164, in status 
    4065 r.draw_background() 
    4066 File
    4067 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4068 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4069 GL.glClear(flags) 
    4070 File "src/errorchecker.pyx", line 59, in
    4071 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4072 OpenGL.error.GLError: GLError( 
    4073 err = 1286, 
    4074 description = b'invalid framebuffer operation', 
    4075 baseOperation = glClear, 
    4076 cArguments = (16640,) 
    4077 ) 
    4078  
    4079 OpenGL.error.GLError: GLError( 
    4080 err = 1286, 
    4081 description = b'invalid framebuffer operation', 
    4082 baseOperation = glClear, 
    4083 cArguments = (16640,) 
    4084 ) 
    4085  
    4086 File "src/errorchecker.pyx", line 59, in
    4087 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4088  
    4089 See log for complete Python traceback. 
    4090  
    4091 
    4092 > rename #15 cryosparc_P121_J1409_002_volume_map_sharp.mrc-四聚体
    4093 
    4094 > view
    4095 
    4096 > volume #15 level 0.2752
    4097 
    4098 > transparency #15.1 50
    4099 
    4100 Traceback (most recent call last): 
    4101 File
    4102 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4103 packages/chimerax/toolbar/tool.py", line 230, in callback 
    4104 bundle_info.run_provider(session, name, session.toolbar,
    4105 display_name=display_name) 
    4106 File
    4107 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4108 packages/chimerax/core/toolshed/info.py", line 397, in run_provider 
    4109 return api._api_caller.run_provider(api, session, name, mgr, **kw) 
    4110 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4111 File
    4112 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4113 packages/chimerax/core/toolshed/__init__.py", line 1420, in run_provider 
    4114 return cls._get_func(api, "run_provider")(session, name, mgr, **kw) 
    4115 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4116 File
    4117 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4118 packages/chimerax/shortcuts/__init__.py", line 66, in run_provider 
    4119 shortcuts.run_provider(session, name) 
    4120 File
    4121 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4122 packages/chimerax/shortcuts/shortcuts.py", line 1393, in run_provider 
    4123 keyboard_shortcuts(session).try_shortcut(name) 
    4124 File
    4125 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4126 packages/chimerax/shortcuts/shortcuts.py", line 403, in try_shortcut 
    4127 self.run_shortcut(keys) 
    4128 File
    4129 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4130 packages/chimerax/shortcuts/shortcuts.py", line 421, in run_shortcut 
    4131 sc.run(self.session, status = self._enabled) 
    4132 File
    4133 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4134 packages/chimerax/shortcuts/shortcuts.py", line 340, in run 
    4135 f(s) 
    4136 File
    4137 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4138 packages/chimerax/shortcuts/shortcuts.py", line 971, in
    4139 toggle_surface_transparency 
    4140 run_on_models('transparency %%s %d' % trans, model_class = Surface)(session) 
    4141 File
    4142 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4143 packages/chimerax/shortcuts/shortcuts.py", line 594, in run_expanded_command 
    4144 run(session, cmd) 
    4145 File
    4146 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4147 packages/chimerax/shortcuts/shortcuts.py", line 537, in run 
    4148 run_command(session, command, **kw) 
    4149 File
    4150 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4151 packages/chimerax/core/commands/run.py", line 49, in run 
    4152 results = command.run(text, log=log, return_json=return_json) 
    4153 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4154 File
    4155 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4156 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4157 result = ci.function(session, **kw_args) 
    4158 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4159 File
    4160 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4161 packages/chimerax/std_commands/transparency.py", line 105, in transparency 
    4162 session.logger.status('Set transparency of %s' % commas(what, 'and')) 
    4163 File
    4164 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4165 packages/chimerax/core/logger.py", line 522, in status 
    4166 StatusLogger.status(self, msg, **kw) 
    4167 File
    4168 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4169 packages/chimerax/core/logger.py", line 220, in status 
    4170 if l.status(msg, color, secondary) and getattr( 
    4171 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4172 File
    4173 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4174 packages/chimerax/ui/gui.py", line 1133, in status 
    4175 sbar.status(msg, color, secondary) 
    4176 File
    4177 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4178 packages/chimerax/ui/statusbar.py", line 164, in status 
    4179 r.draw_background() 
    4180 File
    4181 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4182 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4183 GL.glClear(flags) 
    4184 File "src/errorchecker.pyx", line 59, in
    4185 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4186 OpenGL.error.GLError: GLError( 
    4187 err = 1286, 
    4188 description = b'invalid framebuffer operation', 
    4189 baseOperation = glClear, 
    4190 cArguments = (16640,) 
    4191 ) 
    4192  
    4193 OpenGL.error.GLError: GLError( 
    4194 err = 1286, 
    4195 description = b'invalid framebuffer operation', 
    4196 baseOperation = glClear, 
    4197 cArguments = (16640,) 
    4198 ) 
    4199  
    4200 File "src/errorchecker.pyx", line 59, in
    4201 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4202  
    4203 See log for complete Python traceback. 
    4204  
    4205 
    4206 > open "/Users/a13583/Desktop/PPL/AF3/fold_ppl_tetramer
    4207 > (1)/fold_ppl_tetramer_model_0.cif"
    4208 
    4209 Chain information for fold_ppl_tetramer_model_0.cif #16 
    4210 --- 
    4211 Chain | Description 
    4212 A B C D | . 
    4213  
    4214 Traceback (most recent call last): 
    4215 File
    4216 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4217 packages/chimerax/ui/graphics.py", line 54, in event 
    4218 if self.handle_drag_and_drop(event): 
    4219 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4220 File
    4221 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4222 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    4223 mw.dropEvent(event) 
    4224 File
    4225 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4226 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    4227 _open_dropped_file(self.session, p) 
    4228 File
    4229 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4230 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    4231 run(session, 'open %s' % FileNameArg.unparse(path)) 
    4232 File
    4233 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4234 packages/chimerax/core/commands/run.py", line 49, in run 
    4235 results = command.run(text, log=log, return_json=return_json) 
    4236 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4237 File
    4238 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4239 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4240 result = ci.function(session, **kw_args) 
    4241 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4242 File
    4243 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4244 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    4245 models = Command(session, registry=registry).run(provider_cmd_text,
    4246 log=log)[0] 
    4247 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4248 File
    4249 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4250 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4251 result = ci.function(session, **kw_args) 
    4252 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4253 File
    4254 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4255 packages/chimerax/open_command/cmd.py", line 326, in provider_open 
    4256 session.logger.status(status, log=status) 
    4257 File
    4258 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4259 packages/chimerax/core/logger.py", line 522, in status 
    4260 StatusLogger.status(self, msg, **kw) 
    4261 File
    4262 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4263 packages/chimerax/core/logger.py", line 220, in status 
    4264 if l.status(msg, color, secondary) and getattr( 
    4265 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4266 File
    4267 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4268 packages/chimerax/ui/gui.py", line 1133, in status 
    4269 sbar.status(msg, color, secondary) 
    4270 File
    4271 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4272 packages/chimerax/ui/statusbar.py", line 164, in status 
    4273 r.draw_background() 
    4274 File
    4275 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4276 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4277 GL.glClear(flags) 
    4278 File "src/errorchecker.pyx", line 59, in
    4279 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4280 OpenGL.error.GLError: GLError( 
    4281 err = 1286, 
    4282 description = b'invalid framebuffer operation', 
    4283 baseOperation = glClear, 
    4284 cArguments = (16640,) 
    4285 ) 
    4286  
    4287 OpenGL.error.GLError: GLError( 
    4288 err = 1286, 
    4289 description = b'invalid framebuffer operation', 
    4290 baseOperation = glClear, 
    4291 cArguments = (16640,) 
    4292 ) 
    4293  
    4294 File "src/errorchecker.pyx", line 59, in
    4295 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4296  
    4297 See log for complete Python traceback. 
    4298  
    4299 Computing secondary structure 
    4300 
    4301 > select add #16
    4302 
    4303 28020 atoms, 28608 bonds, 3564 residues, 1 model selected 
    4304 Traceback (most recent call last): 
    4305 File
    4306 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4307 packages/chimerax/model_panel/tool.py", line 480, in _tree_change_cb 
    4308 run(self.session, "select " + mode + " #" + model.id_string) 
    4309 File
    4310 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4311 packages/chimerax/core/commands/run.py", line 49, in run 
    4312 results = command.run(text, log=log, return_json=return_json) 
    4313 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4314 File
    4315 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4316 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4317 result = ci.function(session, **kw_args) 
    4318 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4319 File
    4320 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4321 packages/chimerax/std_commands/select.py", line 120, in select_add 
    4322 report_selection(session) 
    4323 File
    4324 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4325 packages/chimerax/std_commands/select.py", line 192, in report_selection 
    4326 session.logger.status(', '.join(lines) + ' selected', log = True) 
    4327 File
    4328 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4329 packages/chimerax/core/logger.py", line 522, in status 
    4330 StatusLogger.status(self, msg, **kw) 
    4331 File
    4332 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4333 packages/chimerax/core/logger.py", line 220, in status 
    4334 if l.status(msg, color, secondary) and getattr( 
    4335 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4336 File
    4337 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4338 packages/chimerax/ui/gui.py", line 1133, in status 
    4339 sbar.status(msg, color, secondary) 
    4340 File
    4341 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4342 packages/chimerax/ui/statusbar.py", line 164, in status 
    4343 r.draw_background() 
    4344 File
    4345 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4346 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4347 GL.glClear(flags) 
    4348 File "src/errorchecker.pyx", line 59, in
    4349 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4350 OpenGL.error.GLError: GLError( 
    4351 err = 1286, 
    4352 description = b'invalid framebuffer operation', 
    4353 baseOperation = glClear, 
    4354 cArguments = (16640,) 
    4355 ) 
    4356  
    4357 OpenGL.error.GLError: GLError( 
    4358 err = 1286, 
    4359 description = b'invalid framebuffer operation', 
    4360 baseOperation = glClear, 
    4361 cArguments = (16640,) 
    4362 ) 
    4363  
    4364 File "src/errorchecker.pyx", line 59, in
    4365 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4366  
    4367 See log for complete Python traceback. 
    4368  
    4369 
    4370 > hide #16 models
    4371 
    4372 > show #16 models
    4373 
    4374 > select subtract #16
    4375 
    4376 Nothing selected 
    4377 Traceback (most recent call last): 
    4378 File
    4379 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4380 packages/chimerax/model_panel/tool.py", line 480, in _tree_change_cb 
    4381 run(self.session, "select " + mode + " #" + model.id_string) 
    4382 File
    4383 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4384 packages/chimerax/core/commands/run.py", line 49, in run 
    4385 results = command.run(text, log=log, return_json=return_json) 
    4386 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4387 File
    4388 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4389 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4390 result = ci.function(session, **kw_args) 
    4391 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4392 File
    4393 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4394 packages/chimerax/std_commands/select.py", line 132, in select_subtract 
    4395 report_selection(session) 
    4396 File
    4397 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4398 packages/chimerax/std_commands/select.py", line 192, in report_selection 
    4399 session.logger.status(', '.join(lines) + ' selected', log = True) 
    4400 File
    4401 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4402 packages/chimerax/core/logger.py", line 522, in status 
    4403 StatusLogger.status(self, msg, **kw) 
    4404 File
    4405 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4406 packages/chimerax/core/logger.py", line 220, in status 
    4407 if l.status(msg, color, secondary) and getattr( 
    4408 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4409 File
    4410 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4411 packages/chimerax/ui/gui.py", line 1133, in status 
    4412 sbar.status(msg, color, secondary) 
    4413 File
    4414 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4415 packages/chimerax/ui/statusbar.py", line 164, in status 
    4416 r.draw_background() 
    4417 File
    4418 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4419 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4420 GL.glClear(flags) 
    4421 File "src/errorchecker.pyx", line 59, in
    4422 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4423 OpenGL.error.GLError: GLError( 
    4424 err = 1286, 
    4425 description = b'invalid framebuffer operation', 
    4426 baseOperation = glClear, 
    4427 cArguments = (16640,) 
    4428 ) 
    4429  
    4430 OpenGL.error.GLError: GLError( 
    4431 err = 1286, 
    4432 description = b'invalid framebuffer operation', 
    4433 baseOperation = glClear, 
    4434 cArguments = (16640,) 
    4435 ) 
    4436  
    4437 File "src/errorchecker.pyx", line 59, in
    4438 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4439  
    4440 See log for complete Python traceback. 
    4441  
    4442 
    4443 > select add #16
    4444 
    4445 28020 atoms, 28608 bonds, 3564 residues, 1 model selected 
    4446 Traceback (most recent call last): 
    4447 File
    4448 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4449 packages/chimerax/model_panel/tool.py", line 480, in _tree_change_cb 
    4450 run(self.session, "select " + mode + " #" + model.id_string) 
    4451 File
    4452 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4453 packages/chimerax/core/commands/run.py", line 49, in run 
    4454 results = command.run(text, log=log, return_json=return_json) 
    4455 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4456 File
    4457 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4458 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4459 result = ci.function(session, **kw_args) 
    4460 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4461 File
    4462 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4463 packages/chimerax/std_commands/select.py", line 120, in select_add 
    4464 report_selection(session) 
    4465 File
    4466 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4467 packages/chimerax/std_commands/select.py", line 192, in report_selection 
    4468 session.logger.status(', '.join(lines) + ' selected', log = True) 
    4469 File
    4470 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4471 packages/chimerax/core/logger.py", line 522, in status 
    4472 StatusLogger.status(self, msg, **kw) 
    4473 File
    4474 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4475 packages/chimerax/core/logger.py", line 220, in status 
    4476 if l.status(msg, color, secondary) and getattr( 
    4477 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4478 File
    4479 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4480 packages/chimerax/ui/gui.py", line 1133, in status 
    4481 sbar.status(msg, color, secondary) 
    4482 File
    4483 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4484 packages/chimerax/ui/statusbar.py", line 164, in status 
    4485 r.draw_background() 
    4486 File
    4487 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4488 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4489 GL.glClear(flags) 
    4490 File "src/errorchecker.pyx", line 59, in
    4491 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4492 OpenGL.error.GLError: GLError( 
    4493 err = 1286, 
    4494 description = b'invalid framebuffer operation', 
    4495 baseOperation = glClear, 
    4496 cArguments = (16640,) 
    4497 ) 
    4498  
    4499 OpenGL.error.GLError: GLError( 
    4500 err = 1286, 
    4501 description = b'invalid framebuffer operation', 
    4502 baseOperation = glClear, 
    4503 cArguments = (16640,) 
    4504 ) 
    4505  
    4506 File "src/errorchecker.pyx", line 59, in
    4507 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4508  
    4509 See log for complete Python traceback. 
    4510  
    4511 
    4512 > view matrix models #16,1,0,0,-13.426,0,1,0,198.84,0,0,1,185.95
    4513 
    4514 > view matrix models #16,1,0,0,159.82,0,1,0,262.11,0,0,1,239.48
    4515 
    4516 > view matrix models #16,1,0,0,164.58,0,1,0,263.05,0,0,1,243.29
    4517 
    4518 > view matrix models #16,1,0,0,190.69,0,1,0,234.49,0,0,1,199.94
    4519 
    4520 > view matrix models #16,1,0,0,212.23,0,1,0,228.1,0,0,1,202.75
    4521 
    4522 > view matrix models #16,1,0,0,212.31,0,1,0,227.82,0,0,1,213.97
    4523 
    4524 > fitmap #16 inMap #15
    4525 
    4526 Fit molecule fold_ppl_tetramer_model_0.cif (#16) to map
    4527 cryosparc_P121_J1409_002_volume_map_sharp.mrc-四聚体 (#15) using 28020 atoms 
    4528 average map value = 0.1054, steps = 260 
    4529 shifted from previous position = 14.8 
    4530 rotated from previous position = 34.1 degrees 
    4531 atoms outside contour = 21710, contour level = 0.27518 
    4532  
    4533 Position of fold_ppl_tetramer_model_0.cif (#16) relative to
    4534 cryosparc_P121_J1409_002_volume_map_sharp.mrc-四聚体 (#15) coordinates: 
    4535 Matrix rotation and translation 
    4536 0.82910844 0.40472585 -0.38571515 225.81617054 
    4537 -0.38347212 0.91371213 0.13445920 221.35984501 
    4538 0.40685172 0.03642975 0.91276752 211.60660720 
    4539 Axis -0.08736528 -0.70634717 -0.70245355 
    4540 Axis point 137.27165484 -0.00000000 451.07781935 
    4541 Rotation angle (degrees) 34.12720414 
    4542 Shift along axis -324.72920397 
    4543  
    4544 Traceback (most recent call last): 
    4545 File
    4546 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4547 packages/chimerax/toolbar/tool.py", line 230, in callback 
    4548 bundle_info.run_provider(session, name, session.toolbar,
    4549 display_name=display_name) 
    4550 File
    4551 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4552 packages/chimerax/core/toolshed/info.py", line 397, in run_provider 
    4553 return api._api_caller.run_provider(api, session, name, mgr, **kw) 
    4554 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4555 File
    4556 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4557 packages/chimerax/core/toolshed/__init__.py", line 1420, in run_provider 
    4558 return cls._get_func(api, "run_provider")(session, name, mgr, **kw) 
    4559 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4560 File
    4561 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4562 packages/chimerax/shortcuts/__init__.py", line 66, in run_provider 
    4563 shortcuts.run_provider(session, name) 
    4564 File
    4565 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4566 packages/chimerax/shortcuts/shortcuts.py", line 1393, in run_provider 
    4567 keyboard_shortcuts(session).try_shortcut(name) 
    4568 File
    4569 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4570 packages/chimerax/shortcuts/shortcuts.py", line 403, in try_shortcut 
    4571 self.run_shortcut(keys) 
    4572 File
    4573 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4574 packages/chimerax/shortcuts/shortcuts.py", line 421, in run_shortcut 
    4575 sc.run(self.session, status = self._enabled) 
    4576 File
    4577 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4578 packages/chimerax/shortcuts/shortcuts.py", line 340, in run 
    4579 f(s) 
    4580 File
    4581 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4582 packages/chimerax/shortcuts/shortcuts.py", line 832, in fit_in_map 
    4583 run(session, 'fit #%s in #%s' % (model.id_string, map.id_string)) 
    4584 File
    4585 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4586 packages/chimerax/shortcuts/shortcuts.py", line 537, in run 
    4587 run_command(session, command, **kw) 
    4588 File
    4589 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4590 packages/chimerax/core/commands/run.py", line 49, in run 
    4591 results = command.run(text, log=log, return_json=return_json) 
    4592 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4593 File
    4594 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4595 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4596 result = ci.function(session, **kw_args) 
    4597 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4598 File
    4599 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4600 packages/chimerax/map_fit/fitcmd.py", line 138, in fitmap 
    4601 fits = [fit_atoms_in_map(atoms, volume, shift, rotate, mwm, 
    4602 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4603 File
    4604 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4605 packages/chimerax/map_fit/fitcmd.py", line 298, in fit_atoms_in_map 
    4606 log.status('%d steps, shift %.3g, rotation %.3g degrees, average map value
    4607 %.4g' 
    4608 File
    4609 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4610 packages/chimerax/core/logger.py", line 522, in status 
    4611 StatusLogger.status(self, msg, **kw) 
    4612 File
    4613 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4614 packages/chimerax/core/logger.py", line 220, in status 
    4615 if l.status(msg, color, secondary) and getattr( 
    4616 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4617 File
    4618 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4619 packages/chimerax/ui/gui.py", line 1133, in status 
    4620 sbar.status(msg, color, secondary) 
    4621 File
    4622 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4623 packages/chimerax/ui/statusbar.py", line 164, in status 
    4624 r.draw_background() 
    4625 File
    4626 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4627 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4628 GL.glClear(flags) 
    4629 File "src/errorchecker.pyx", line 59, in
    4630 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4631 OpenGL.error.GLError: GLError( 
    4632 err = 1286, 
    4633 description = b'invalid framebuffer operation', 
    4634 baseOperation = glClear, 
    4635 cArguments = (16640,) 
    4636 ) 
    4637  
    4638 OpenGL.error.GLError: GLError( 
    4639 err = 1286, 
    4640 description = b'invalid framebuffer operation', 
    4641 baseOperation = glClear, 
    4642 cArguments = (16640,) 
    4643 ) 
    4644  
    4645 File "src/errorchecker.pyx", line 59, in
    4646 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4647  
    4648 See log for complete Python traceback. 
    4649  
    4650 
    4651 > view matrix models
    4652 > #16,0.82911,0.40473,-0.38572,221.81,-0.38347,0.91371,0.13446,214.93,0.40685,0.03643,0.91277,225.76
    4653 
    4654 > ui mousemode right "rotate selected models"
    4655 
    4656 > view matrix models
    4657 > #16,0.98034,-0.18143,-0.077593,224.53,0.19725,0.91204,0.35956,222.74,0.0055347,-0.36779,0.92989,220.83
    4658 
    4659 > view matrix models
    4660 > #16,0.85792,-0.48014,0.18284,224.11,0.50945,0.7489,-0.4238,222.43,0.066555,0.45674,0.88711,222.06
    4661 
    4662 > view matrix models
    4663 > #16,0.71417,-0.61733,0.32994,223.03,0.69773,0.66553,-0.26504,225.3,-0.055963,0.41949,0.90603,220.7
    4664 
    4665 > view matrix models
    4666 > #16,0.49374,-0.65286,0.57445,221.63,0.80911,0.58697,-0.028348,227.67,-0.31868,0.47879,0.81805,217.28
    4667 
    4668 > view matrix models
    4669 > #16,0.3461,-0.72934,0.59015,219.92,0.85394,0.50542,0.12382,228.85,-0.38859,0.4611,0.79774,216.36
    4670 
    4671 > view matrix models
    4672 > #16,0.26848,-0.77082,0.57772,218.92,0.88728,0.43138,0.16322,229.36,-0.37503,0.46878,0.79975,216.53
    4673 
    4674 > ui mousemode right "translate selected models"
    4675 
    4676 > view matrix models
    4677 > #16,0.26848,-0.77082,0.57772,229.51,0.88728,0.43138,0.16322,233.26,-0.37503,0.46878,0.79975,221.83
    4678 
    4679 > view matrix models
    4680 > #16,0.26848,-0.77082,0.57772,235.25,0.88728,0.43138,0.16322,225.08,-0.37503,0.46878,0.79975,223.29
    4681 
    4682 > view matrix models
    4683 > #16,0.26848,-0.77082,0.57772,234.59,0.88728,0.43138,0.16322,222.99,-0.37503,0.46878,0.79975,226.03
    4684 
    4685 > view matrix models
    4686 > #16,0.26848,-0.77082,0.57772,233.93,0.88728,0.43138,0.16322,227.51,-0.37503,0.46878,0.79975,227.17
    4687 
    4688 > ui mousemode right "rotate selected models"
    4689 
    4690 > view matrix models
    4691 > #16,0.81404,0.0084976,0.58074,240.96,0.21821,0.92216,-0.31937,217.86,-0.53825,0.38671,0.74883,224.96
    4692 
    4693 > ui mousemode right "translate selected models"
    4694 
    4695 > view matrix models
    4696 > #16,0.81404,0.0084976,0.58074,241.96,0.21821,0.92216,-0.31937,212.24,-0.53825,0.38671,0.74883,226.18
    4697 
    4698 > open "/Users/a13583/Desktop/PPL/AF3/fold_ppl_tetramer
    4699 > (1)/fold_ppl_tetramer_model_1.cif"
    4700 
    4701 Chain information for fold_ppl_tetramer_model_1.cif #17 
    4702 --- 
    4703 Chain | Description 
    4704 A B C D | . 
    4705  
    4706 Traceback (most recent call last): 
    4707 File
    4708 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4709 packages/chimerax/ui/graphics.py", line 54, in event 
    4710 if self.handle_drag_and_drop(event): 
    4711 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4712 File
    4713 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4714 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    4715 mw.dropEvent(event) 
    4716 File
    4717 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4718 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    4719 _open_dropped_file(self.session, p) 
    4720 File
    4721 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4722 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    4723 run(session, 'open %s' % FileNameArg.unparse(path)) 
    4724 File
    4725 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4726 packages/chimerax/core/commands/run.py", line 49, in run 
    4727 results = command.run(text, log=log, return_json=return_json) 
    4728 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4729 File
    4730 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4731 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4732 result = ci.function(session, **kw_args) 
    4733 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4734 File
    4735 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4736 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    4737 models = Command(session, registry=registry).run(provider_cmd_text,
    4738 log=log)[0] 
    4739 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4740 File
    4741 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4742 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4743 result = ci.function(session, **kw_args) 
    4744 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4745 File
    4746 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4747 packages/chimerax/open_command/cmd.py", line 326, in provider_open 
    4748 session.logger.status(status, log=status) 
    4749 File
    4750 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4751 packages/chimerax/core/logger.py", line 522, in status 
    4752 StatusLogger.status(self, msg, **kw) 
    4753 File
    4754 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4755 packages/chimerax/core/logger.py", line 220, in status 
    4756 if l.status(msg, color, secondary) and getattr( 
    4757 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4758 File
    4759 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4760 packages/chimerax/ui/gui.py", line 1133, in status 
    4761 sbar.status(msg, color, secondary) 
    4762 File
    4763 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4764 packages/chimerax/ui/statusbar.py", line 164, in status 
    4765 r.draw_background() 
    4766 File
    4767 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4768 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4769 GL.glClear(flags) 
    4770 File "src/errorchecker.pyx", line 59, in
    4771 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4772 OpenGL.error.GLError: GLError( 
    4773 err = 1286, 
    4774 description = b'invalid framebuffer operation', 
    4775 baseOperation = glClear, 
    4776 cArguments = (16640,) 
    4777 ) 
    4778  
    4779 OpenGL.error.GLError: GLError( 
    4780 err = 1286, 
    4781 description = b'invalid framebuffer operation', 
    4782 baseOperation = glClear, 
    4783 cArguments = (16640,) 
    4784 ) 
    4785  
    4786 File "src/errorchecker.pyx", line 59, in
    4787 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4788  
    4789 See log for complete Python traceback. 
    4790  
    4791 Computing secondary structure 
    4792 
    4793 > close #17
    4794 
    4795 > open "/Users/a13583/Desktop/PPL/AF3/fold_ppl_tetramer
    4796 > (1)/fold_ppl_tetramer_model_2.cif"
    4797 
    4798 Chain information for fold_ppl_tetramer_model_2.cif #17 
    4799 --- 
    4800 Chain | Description 
    4801 A B C D | . 
    4802  
    4803 Traceback (most recent call last): 
    4804 File
    4805 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4806 packages/chimerax/ui/graphics.py", line 54, in event 
    4807 if self.handle_drag_and_drop(event): 
    4808 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4809 File
    4810 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4811 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    4812 mw.dropEvent(event) 
    4813 File
    4814 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4815 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    4816 _open_dropped_file(self.session, p) 
    4817 File
    4818 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4819 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    4820 run(session, 'open %s' % FileNameArg.unparse(path)) 
    4821 File
    4822 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4823 packages/chimerax/core/commands/run.py", line 49, in run 
    4824 results = command.run(text, log=log, return_json=return_json) 
    4825 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4826 File
    4827 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4828 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4829 result = ci.function(session, **kw_args) 
    4830 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4831 File
    4832 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4833 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    4834 models = Command(session, registry=registry).run(provider_cmd_text,
    4835 log=log)[0] 
    4836 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4837 File
    4838 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4839 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4840 result = ci.function(session, **kw_args) 
    4841 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4842 File
    4843 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4844 packages/chimerax/open_command/cmd.py", line 326, in provider_open 
    4845 session.logger.status(status, log=status) 
    4846 File
    4847 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4848 packages/chimerax/core/logger.py", line 522, in status 
    4849 StatusLogger.status(self, msg, **kw) 
    4850 File
    4851 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4852 packages/chimerax/core/logger.py", line 220, in status 
    4853 if l.status(msg, color, secondary) and getattr( 
    4854 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4855 File
    4856 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4857 packages/chimerax/ui/gui.py", line 1133, in status 
    4858 sbar.status(msg, color, secondary) 
    4859 File
    4860 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4861 packages/chimerax/ui/statusbar.py", line 164, in status 
    4862 r.draw_background() 
    4863 File
    4864 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4865 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4866 GL.glClear(flags) 
    4867 File "src/errorchecker.pyx", line 59, in
    4868 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4869 OpenGL.error.GLError: GLError( 
    4870 err = 1286, 
    4871 description = b'invalid framebuffer operation', 
    4872 baseOperation = glClear, 
    4873 cArguments = (16640,) 
    4874 ) 
    4875  
    4876 OpenGL.error.GLError: GLError( 
    4877 err = 1286, 
    4878 description = b'invalid framebuffer operation', 
    4879 baseOperation = glClear, 
    4880 cArguments = (16640,) 
    4881 ) 
    4882  
    4883 File "src/errorchecker.pyx", line 59, in
    4884 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4885  
    4886 See log for complete Python traceback. 
    4887  
    4888 Computing secondary structure 
    4889 
    4890 > open "/Users/a13583/Desktop/PPL/AF3/fold_ppl_tetramer
    4891 > (1)/fold_ppl_tetramer_model_3.cif"
    4892 
    4893 Chain information for fold_ppl_tetramer_model_3.cif #18 
    4894 --- 
    4895 Chain | Description 
    4896 A B C D | . 
    4897  
    4898 Traceback (most recent call last): 
    4899 File
    4900 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4901 packages/chimerax/ui/graphics.py", line 54, in event 
    4902 if self.handle_drag_and_drop(event): 
    4903 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4904 File
    4905 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4906 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    4907 mw.dropEvent(event) 
    4908 File
    4909 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4910 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    4911 _open_dropped_file(self.session, p) 
    4912 File
    4913 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4914 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    4915 run(session, 'open %s' % FileNameArg.unparse(path)) 
    4916 File
    4917 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4918 packages/chimerax/core/commands/run.py", line 49, in run 
    4919 results = command.run(text, log=log, return_json=return_json) 
    4920 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4921 File
    4922 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4923 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4924 result = ci.function(session, **kw_args) 
    4925 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4926 File
    4927 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4928 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    4929 models = Command(session, registry=registry).run(provider_cmd_text,
    4930 log=log)[0] 
    4931 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4932 File
    4933 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4934 packages/chimerax/core/commands/cli.py", line 3237, in run 
    4935 result = ci.function(session, **kw_args) 
    4936 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4937 File
    4938 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4939 packages/chimerax/open_command/cmd.py", line 326, in provider_open 
    4940 session.logger.status(status, log=status) 
    4941 File
    4942 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4943 packages/chimerax/core/logger.py", line 522, in status 
    4944 StatusLogger.status(self, msg, **kw) 
    4945 File
    4946 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4947 packages/chimerax/core/logger.py", line 220, in status 
    4948 if l.status(msg, color, secondary) and getattr( 
    4949 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4950 File
    4951 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4952 packages/chimerax/ui/gui.py", line 1133, in status 
    4953 sbar.status(msg, color, secondary) 
    4954 File
    4955 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4956 packages/chimerax/ui/statusbar.py", line 164, in status 
    4957 r.draw_background() 
    4958 File
    4959 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4960 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    4961 GL.glClear(flags) 
    4962 File "src/errorchecker.pyx", line 59, in
    4963 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4964 OpenGL.error.GLError: GLError( 
    4965 err = 1286, 
    4966 description = b'invalid framebuffer operation', 
    4967 baseOperation = glClear, 
    4968 cArguments = (16640,) 
    4969 ) 
    4970  
    4971 OpenGL.error.GLError: GLError( 
    4972 err = 1286, 
    4973 description = b'invalid framebuffer operation', 
    4974 baseOperation = glClear, 
    4975 cArguments = (16640,) 
    4976 ) 
    4977  
    4978 File "src/errorchecker.pyx", line 59, in
    4979 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    4980  
    4981 See log for complete Python traceback. 
    4982  
    4983 Computing secondary structure 
    4984 
    4985 > hide #17 models
    4986 
    4987 > open "/Users/a13583/Desktop/PPL/AF3/fold_ppl_tetramer
    4988 > (1)/fold_ppl_tetramer_model_4.cif"
    4989 
    4990 Chain information for fold_ppl_tetramer_model_4.cif #20 
    4991 --- 
    4992 Chain | Description 
    4993 A B C D | . 
    4994  
    4995 Traceback (most recent call last): 
    4996 File
    4997 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4998 packages/chimerax/ui/graphics.py", line 54, in event 
    4999 if self.handle_drag_and_drop(event): 
    5000 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5001 File
    5002 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5003 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    5004 mw.dropEvent(event) 
    5005 File
    5006 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5007 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    5008 _open_dropped_file(self.session, p) 
    5009 File
    5010 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5011 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    5012 run(session, 'open %s' % FileNameArg.unparse(path)) 
    5013 File
    5014 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5015 packages/chimerax/core/commands/run.py", line 49, in run 
    5016 results = command.run(text, log=log, return_json=return_json) 
    5017 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5018 File
    5019 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5020 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5021 result = ci.function(session, **kw_args) 
    5022 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5023 File
    5024 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5025 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    5026 models = Command(session, registry=registry).run(provider_cmd_text,
    5027 log=log)[0] 
    5028 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5029 File
    5030 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5031 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5032 result = ci.function(session, **kw_args) 
    5033 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5034 File
    5035 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5036 packages/chimerax/open_command/cmd.py", line 326, in provider_open 
    5037 session.logger.status(status, log=status) 
    5038 File
    5039 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5040 packages/chimerax/core/logger.py", line 522, in status 
    5041 StatusLogger.status(self, msg, **kw) 
    5042 File
    5043 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5044 packages/chimerax/core/logger.py", line 220, in status 
    5045 if l.status(msg, color, secondary) and getattr( 
    5046 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5047 File
    5048 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5049 packages/chimerax/ui/gui.py", line 1133, in status 
    5050 sbar.status(msg, color, secondary) 
    5051 File
    5052 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5053 packages/chimerax/ui/statusbar.py", line 164, in status 
    5054 r.draw_background() 
    5055 File
    5056 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5057 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5058 GL.glClear(flags) 
    5059 File "src/errorchecker.pyx", line 59, in
    5060 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5061 OpenGL.error.GLError: GLError( 
    5062 err = 1286, 
    5063 description = b'invalid framebuffer operation', 
    5064 baseOperation = glClear, 
    5065 cArguments = (16640,) 
    5066 ) 
    5067  
    5068 OpenGL.error.GLError: GLError( 
    5069 err = 1286, 
    5070 description = b'invalid framebuffer operation', 
    5071 baseOperation = glClear, 
    5072 cArguments = (16640,) 
    5073 ) 
    5074  
    5075 File "src/errorchecker.pyx", line 59, in
    5076 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5077  
    5078 See log for complete Python traceback. 
    5079  
    5080 Computing secondary structure 
    5081 
    5082 > hide #18 models
    5083 
    5084 > hide #16 models
    5085 
    5086 > select subtract #16
    5087 
    5088 Nothing selected 
    5089 Traceback (most recent call last): 
    5090 File
    5091 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5092 packages/chimerax/model_panel/tool.py", line 480, in _tree_change_cb 
    5093 run(self.session, "select " + mode + " #" + model.id_string) 
    5094 File
    5095 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5096 packages/chimerax/core/commands/run.py", line 49, in run 
    5097 results = command.run(text, log=log, return_json=return_json) 
    5098 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5099 File
    5100 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5101 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5102 result = ci.function(session, **kw_args) 
    5103 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5104 File
    5105 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5106 packages/chimerax/std_commands/select.py", line 132, in select_subtract 
    5107 report_selection(session) 
    5108 File
    5109 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5110 packages/chimerax/std_commands/select.py", line 192, in report_selection 
    5111 session.logger.status(', '.join(lines) + ' selected', log = True) 
    5112 File
    5113 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5114 packages/chimerax/core/logger.py", line 522, in status 
    5115 StatusLogger.status(self, msg, **kw) 
    5116 File
    5117 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5118 packages/chimerax/core/logger.py", line 220, in status 
    5119 if l.status(msg, color, secondary) and getattr( 
    5120 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5121 File
    5122 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5123 packages/chimerax/ui/gui.py", line 1133, in status 
    5124 sbar.status(msg, color, secondary) 
    5125 File
    5126 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5127 packages/chimerax/ui/statusbar.py", line 164, in status 
    5128 r.draw_background() 
    5129 File
    5130 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5131 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5132 GL.glClear(flags) 
    5133 File "src/errorchecker.pyx", line 59, in
    5134 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5135 OpenGL.error.GLError: GLError( 
    5136 err = 1286, 
    5137 description = b'invalid framebuffer operation', 
    5138 baseOperation = glClear, 
    5139 cArguments = (16640,) 
    5140 ) 
    5141  
    5142 OpenGL.error.GLError: GLError( 
    5143 err = 1286, 
    5144 description = b'invalid framebuffer operation', 
    5145 baseOperation = glClear, 
    5146 cArguments = (16640,) 
    5147 ) 
    5148  
    5149 File "src/errorchecker.pyx", line 59, in
    5150 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5151  
    5152 See log for complete Python traceback. 
    5153  
    5154 
    5155 > select add #20
    5156 
    5157 28020 atoms, 28608 bonds, 3564 residues, 1 model selected 
    5158 Traceback (most recent call last): 
    5159 File
    5160 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5161 packages/chimerax/model_panel/tool.py", line 480, in _tree_change_cb 
    5162 run(self.session, "select " + mode + " #" + model.id_string) 
    5163 File
    5164 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5165 packages/chimerax/core/commands/run.py", line 49, in run 
    5166 results = command.run(text, log=log, return_json=return_json) 
    5167 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5168 File
    5169 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5170 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5171 result = ci.function(session, **kw_args) 
    5172 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5173 File
    5174 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5175 packages/chimerax/std_commands/select.py", line 120, in select_add 
    5176 report_selection(session) 
    5177 File
    5178 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5179 packages/chimerax/std_commands/select.py", line 192, in report_selection 
    5180 session.logger.status(', '.join(lines) + ' selected', log = True) 
    5181 File
    5182 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5183 packages/chimerax/core/logger.py", line 522, in status 
    5184 StatusLogger.status(self, msg, **kw) 
    5185 File
    5186 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5187 packages/chimerax/core/logger.py", line 220, in status 
    5188 if l.status(msg, color, secondary) and getattr( 
    5189 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5190 File
    5191 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5192 packages/chimerax/ui/gui.py", line 1133, in status 
    5193 sbar.status(msg, color, secondary) 
    5194 File
    5195 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5196 packages/chimerax/ui/statusbar.py", line 164, in status 
    5197 r.draw_background() 
    5198 File
    5199 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5200 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5201 GL.glClear(flags) 
    5202 File "src/errorchecker.pyx", line 59, in
    5203 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5204 OpenGL.error.GLError: GLError( 
    5205 err = 1286, 
    5206 description = b'invalid framebuffer operation', 
    5207 baseOperation = glClear, 
    5208 cArguments = (16640,) 
    5209 ) 
    5210  
    5211 OpenGL.error.GLError: GLError( 
    5212 err = 1286, 
    5213 description = b'invalid framebuffer operation', 
    5214 baseOperation = glClear, 
    5215 cArguments = (16640,) 
    5216 ) 
    5217  
    5218 File "src/errorchecker.pyx", line 59, in
    5219 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5220  
    5221 See log for complete Python traceback. 
    5222  
    5223 
    5224 > view matrix models #20,1,0,0,9.5521,0,1,0,6.77,0,0,1,45.281
    5225 
    5226 > view matrix models #20,1,0,0,2.7605,0,1,0,6.5467,0,0,1,32.101
    5227 
    5228 > view matrix models #20,1,0,0,122.53,0,1,0,4.7446,0,0,1,240.75
    5229 
    5230 > view matrix models #20,1,0,0,209.4,0,1,0,175.94,0,0,1,151.84
    5231 
    5232 > view matrix models #20,1,0,0,195.33,0,1,0,180.2,0,0,1,189.37
    5233 
    5234 > view matrix models #20,1,0,0,198.12,0,1,0,181.61,0,0,1,192.72
    5235 
    5236 > view matrix models #20,1,0,0,201.97,0,1,0,212.07,0,0,1,219.81
    5237 
    5238 > ui mousemode right "rotate selected models"
    5239 
    5240 > view matrix models
    5241 > #20,0.64853,0.73327,-0.20426,196.76,-0.71101,0.67938,0.1814,205.25,0.27178,0.027589,0.96196,222.62
    5242 
    5243 > view matrix models
    5244 > #20,0.37983,0.86116,-0.33783,193.08,-0.83551,0.47612,0.2743,204.41,0.39706,0.17808,0.90035,223.63
    5245 
    5246 > view matrix models
    5247 > #20,-0.10405,-0.85378,0.51013,192.65,0.60411,0.3532,0.71435,222.53,-0.79008,0.38251,0.47902,208.37
    5248 
    5249 > ui mousemode right "translate selected models"
    5250 
    5251 > view matrix models
    5252 > #20,-0.10405,-0.85378,0.51013,217.34,0.60411,0.3532,0.71435,229.93,-0.79008,0.38251,0.47902,208.68
    5253 
    5254 > view matrix models
    5255 > #20,-0.10405,-0.85378,0.51013,218.48,0.60411,0.3532,0.71435,228.24,-0.79008,0.38251,0.47902,217.94
    5256 
    5257 > view matrix models
    5258 > #20,-0.10405,-0.85378,0.51013,212.46,0.60411,0.3532,0.71435,227.28,-0.79008,0.38251,0.47902,225.73
    5259 
    5260 > ui mousemode right "rotate selected models"
    5261 
    5262 > view matrix models
    5263 > #20,0.908,0.41887,0.0095428,220.63,-0.40603,0.88533,-0.22657,211.28,-0.10335,0.20185,0.97395,235.81
    5264 
    5265 > view matrix models
    5266 > #20,0.80574,0.57005,-0.16069,218.6,-0.59211,0.76913,-0.24049,209.21,-0.013501,0.28892,0.95726,236.69
    5267 
    5268 > view matrix models
    5269 > #20,0.74913,0.61907,-0.2357,217.58,-0.66124,0.72011,-0.21024,208.61,0.039576,0.31335,0.94881,237.22
    5270 
    5271 > ui mousemode right "translate selected models"
    5272 
    5273 > view matrix models
    5274 > #20,0.74913,0.61907,-0.2357,210.35,-0.66124,0.72011,-0.21024,228.58,0.039576,0.31335,0.94881,229.55
    5275 
    5276 > view matrix models
    5277 > #20,0.74913,0.61907,-0.2357,221.82,-0.66124,0.72011,-0.21024,229.12,0.039576,0.31335,0.94881,222.15
    5278 
    5279 > fitmap #20 inMap #15
    5280 
    5281 Fit molecule fold_ppl_tetramer_model_4.cif (#20) to map
    5282 cryosparc_P121_J1409_002_volume_map_sharp.mrc-四聚体 (#15) using 28020 atoms 
    5283 average map value = 0.1669, steps = 152 
    5284 shifted from previous position = 17.2 
    5285 rotated from previous position = 12 degrees 
    5286 atoms outside contour = 19964, contour level = 0.27518 
    5287  
    5288 Position of fold_ppl_tetramer_model_4.cif (#20) relative to
    5289 cryosparc_P121_J1409_002_volume_map_sharp.mrc-四聚体 (#15) coordinates: 
    5290 Matrix rotation and translation 
    5291 0.59869431 0.76015013 -0.25246168 238.36913778 
    5292 -0.80097741 0.56839407 -0.18805149 231.76690665 
    5293 0.00055036 0.31480146 0.94915738 225.41414734 
    5294 Axis 0.30301170 -0.15246129 -0.94071221 
    5295 Axis point 360.15612662 -193.26571782 0.00000000 
    5296 Rotation angle (degrees) 56.07391820 
    5297 Shift along axis -175.15668444 
    5298  
    5299 Traceback (most recent call last): 
    5300 File
    5301 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5302 packages/chimerax/toolbar/tool.py", line 230, in callback 
    5303 bundle_info.run_provider(session, name, session.toolbar,
    5304 display_name=display_name) 
    5305 File
    5306 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5307 packages/chimerax/core/toolshed/info.py", line 397, in run_provider 
    5308 return api._api_caller.run_provider(api, session, name, mgr, **kw) 
    5309 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5310 File
    5311 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5312 packages/chimerax/core/toolshed/__init__.py", line 1420, in run_provider 
    5313 return cls._get_func(api, "run_provider")(session, name, mgr, **kw) 
    5314 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5315 File
    5316 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5317 packages/chimerax/shortcuts/__init__.py", line 66, in run_provider 
    5318 shortcuts.run_provider(session, name) 
    5319 File
    5320 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5321 packages/chimerax/shortcuts/shortcuts.py", line 1393, in run_provider 
    5322 keyboard_shortcuts(session).try_shortcut(name) 
    5323 File
    5324 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5325 packages/chimerax/shortcuts/shortcuts.py", line 403, in try_shortcut 
    5326 self.run_shortcut(keys) 
    5327 File
    5328 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5329 packages/chimerax/shortcuts/shortcuts.py", line 421, in run_shortcut 
    5330 sc.run(self.session, status = self._enabled) 
    5331 File
    5332 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5333 packages/chimerax/shortcuts/shortcuts.py", line 340, in run 
    5334 f(s) 
    5335 File
    5336 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5337 packages/chimerax/shortcuts/shortcuts.py", line 832, in fit_in_map 
    5338 run(session, 'fit #%s in #%s' % (model.id_string, map.id_string)) 
    5339 File
    5340 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5341 packages/chimerax/shortcuts/shortcuts.py", line 537, in run 
    5342 run_command(session, command, **kw) 
    5343 File
    5344 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5345 packages/chimerax/core/commands/run.py", line 49, in run 
    5346 results = command.run(text, log=log, return_json=return_json) 
    5347 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5348 File
    5349 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5350 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5351 result = ci.function(session, **kw_args) 
    5352 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5353 File
    5354 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5355 packages/chimerax/map_fit/fitcmd.py", line 138, in fitmap 
    5356 fits = [fit_atoms_in_map(atoms, volume, shift, rotate, mwm, 
    5357 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5358 File
    5359 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5360 packages/chimerax/map_fit/fitcmd.py", line 298, in fit_atoms_in_map 
    5361 log.status('%d steps, shift %.3g, rotation %.3g degrees, average map value
    5362 %.4g' 
    5363 File
    5364 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5365 packages/chimerax/core/logger.py", line 522, in status 
    5366 StatusLogger.status(self, msg, **kw) 
    5367 File
    5368 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5369 packages/chimerax/core/logger.py", line 220, in status 
    5370 if l.status(msg, color, secondary) and getattr( 
    5371 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5372 File
    5373 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5374 packages/chimerax/ui/gui.py", line 1133, in status 
    5375 sbar.status(msg, color, secondary) 
    5376 File
    5377 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5378 packages/chimerax/ui/statusbar.py", line 164, in status 
    5379 r.draw_background() 
    5380 File
    5381 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5382 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5383 GL.glClear(flags) 
    5384 File "src/errorchecker.pyx", line 59, in
    5385 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5386 OpenGL.error.GLError: GLError( 
    5387 err = 1286, 
    5388 description = b'invalid framebuffer operation', 
    5389 baseOperation = glClear, 
    5390 cArguments = (16640,) 
    5391 ) 
    5392  
    5393 OpenGL.error.GLError: GLError( 
    5394 err = 1286, 
    5395 description = b'invalid framebuffer operation', 
    5396 baseOperation = glClear, 
    5397 cArguments = (16640,) 
    5398 ) 
    5399  
    5400 File "src/errorchecker.pyx", line 59, in
    5401 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5402  
    5403 See log for complete Python traceback. 
    5404  
    5405 
    5406 > hide #20 models
    5407 
    5408 > show #20 models
    5409 
    5410 > select subtract #20
    5411 
    5412 Nothing selected 
    5413 Traceback (most recent call last): 
    5414 File
    5415 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5416 packages/chimerax/model_panel/tool.py", line 480, in _tree_change_cb 
    5417 run(self.session, "select " + mode + " #" + model.id_string) 
    5418 File
    5419 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5420 packages/chimerax/core/commands/run.py", line 49, in run 
    5421 results = command.run(text, log=log, return_json=return_json) 
    5422 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5423 File
    5424 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5425 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5426 result = ci.function(session, **kw_args) 
    5427 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5428 File
    5429 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5430 packages/chimerax/std_commands/select.py", line 132, in select_subtract 
    5431 report_selection(session) 
    5432 File
    5433 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5434 packages/chimerax/std_commands/select.py", line 192, in report_selection 
    5435 session.logger.status(', '.join(lines) + ' selected', log = True) 
    5436 File
    5437 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5438 packages/chimerax/core/logger.py", line 522, in status 
    5439 StatusLogger.status(self, msg, **kw) 
    5440 File
    5441 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5442 packages/chimerax/core/logger.py", line 220, in status 
    5443 if l.status(msg, color, secondary) and getattr( 
    5444 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5445 File
    5446 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5447 packages/chimerax/ui/gui.py", line 1133, in status 
    5448 sbar.status(msg, color, secondary) 
    5449 File
    5450 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5451 packages/chimerax/ui/statusbar.py", line 164, in status 
    5452 r.draw_background() 
    5453 File
    5454 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5455 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5456 GL.glClear(flags) 
    5457 File "src/errorchecker.pyx", line 59, in
    5458 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5459 OpenGL.error.GLError: GLError( 
    5460 err = 1286, 
    5461 description = b'invalid framebuffer operation', 
    5462 baseOperation = glClear, 
    5463 cArguments = (16640,) 
    5464 ) 
    5465  
    5466 OpenGL.error.GLError: GLError( 
    5467 err = 1286, 
    5468 description = b'invalid framebuffer operation', 
    5469 baseOperation = glClear, 
    5470 cArguments = (16640,) 
    5471 ) 
    5472  
    5473 File "src/errorchecker.pyx", line 59, in
    5474 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5475  
    5476 See log for complete Python traceback. 
    5477  
    5478 
    5479 > volume #15 level 0.2575
    5480 
    5481 > volume #15 level 0.2279
    5482 
    5483 Traceback (most recent call last): 
    5484 File
    5485 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5486 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    5487 self.status(self._last_message, self._last_color) 
    5488 File
    5489 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5490 packages/chimerax/ui/statusbar.py", line 164, in status 
    5491 r.draw_background() 
    5492 File
    5493 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5494 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5495 GL.glClear(flags) 
    5496 File "src/errorchecker.pyx", line 59, in
    5497 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5498 OpenGL.error.GLError: GLError( 
    5499 err = 1286, 
    5500 description = b'invalid framebuffer operation', 
    5501 baseOperation = glClear, 
    5502 cArguments = (16640,) 
    5503 ) 
    5504  
    5505 OpenGL.error.GLError: GLError( 
    5506 err = 1286, 
    5507 description = b'invalid framebuffer operation', 
    5508 baseOperation = glClear, 
    5509 cArguments = (16640,) 
    5510 ) 
    5511  
    5512 File "src/errorchecker.pyx", line 59, in
    5513 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5514  
    5515 See log for complete Python traceback. 
    5516  
    5517 Traceback (most recent call last): 
    5518 File
    5519 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5520 packages/chimerax/ui/statusbar.py", line 98, in _expose_event 
    5521 self.status(self._last_message, self._last_color) 
    5522 File
    5523 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5524 packages/chimerax/ui/statusbar.py", line 164, in status 
    5525 r.draw_background() 
    5526 File
    5527 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5528 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5529 GL.glClear(flags) 
    5530 File "src/errorchecker.pyx", line 59, in
    5531 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5532 OpenGL.error.GLError: GLError( 
    5533 err = 1286, 
    5534 description = b'invalid framebuffer operation', 
    5535 baseOperation = glClear, 
    5536 cArguments = (16640,) 
    5537 ) 
    5538  
    5539 OpenGL.error.GLError: GLError( 
    5540 err = 1286, 
    5541 description = b'invalid framebuffer operation', 
    5542 baseOperation = glClear, 
    5543 cArguments = (16640,) 
    5544 ) 
    5545  
    5546 File "src/errorchecker.pyx", line 59, in
    5547 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5548  
    5549 See log for complete Python traceback. 
    5550  
    5551 
    5552 > hide #20 models
    5553 
    5554 > hide #!15 models
    5555 
    5556 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    5557 
    5558 Traceback (most recent call last): 
    5559 File
    5560 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5561 packages/chimerax/ui/graphics.py", line 54, in event 
    5562 if self.handle_drag_and_drop(event): 
    5563 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5564 File
    5565 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5566 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    5567 mw.dropEvent(event) 
    5568 File
    5569 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5570 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    5571 _open_dropped_file(self.session, p) 
    5572 File
    5573 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5574 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    5575 run(session, 'open %s' % FileNameArg.unparse(path)) 
    5576 File
    5577 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5578 packages/chimerax/core/commands/run.py", line 49, in run 
    5579 results = command.run(text, log=log, return_json=return_json) 
    5580 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5581 File
    5582 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5583 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5584 result = ci.function(session, **kw_args) 
    5585 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5586 File
    5587 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5588 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    5589 models = Command(session, registry=registry).run(provider_cmd_text,
    5590 log=log)[0] 
    5591 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5592 File
    5593 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5594 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5595 result = ci.function(session, **kw_args) 
    5596 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5597 File
    5598 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5599 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    5600 models, status = collated_open(session, None, paths, data_format, _add_models,
    5601 log_errors, 
    5602 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5603 File
    5604 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5605 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    5606 return remember_data_format() 
    5607 ^^^^^^^^^^^^^^^^^^^^^^ 
    5608 File
    5609 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5610 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    5611 models, status = func(*func_args, **func_kw) 
    5612 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5613 File
    5614 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5615 packages/chimerax/map/__init__.py", line 183, in open 
    5616 return open_map(session, path, format=_name, **kw) 
    5617 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5618 File
    5619 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5620 packages/chimerax/map/volume.py", line 3752, in open_map 
    5621 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    5622 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5623 File
    5624 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5625 packages/chimerax/map/volume.py", line 3854, in open_grids 
    5626 v.update_drawings() 
    5627 File
    5628 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5629 packages/chimerax/map/volume.py", line 830, in update_drawings 
    5630 self._update_surfaces() 
    5631 File
    5632 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5633 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    5634 s.update_surface(ro) 
    5635 File
    5636 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5637 packages/chimerax/map/volume.py", line 2212, in update_surface 
    5638 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    5639 File
    5640 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5641 packages/chimerax/map/volume.py", line 122, in message 
    5642 self.message_cb(text, **kw) 
    5643 File
    5644 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5645 packages/chimerax/core/logger.py", line 522, in status 
    5646 StatusLogger.status(self, msg, **kw) 
    5647 File
    5648 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5649 packages/chimerax/core/logger.py", line 220, in status 
    5650 if l.status(msg, color, secondary) and getattr( 
    5651 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5652 File
    5653 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5654 packages/chimerax/ui/gui.py", line 1133, in status 
    5655 sbar.status(msg, color, secondary) 
    5656 File
    5657 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5658 packages/chimerax/ui/statusbar.py", line 164, in status 
    5659 r.draw_background() 
    5660 File
    5661 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5662 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5663 GL.glClear(flags) 
    5664 File "src/errorchecker.pyx", line 59, in
    5665 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5666 OpenGL.error.GLError: GLError( 
    5667 err = 1286, 
    5668 description = b'invalid framebuffer operation', 
    5669 baseOperation = glClear, 
    5670 cArguments = (16640,) 
    5671 ) 
    5672  
    5673 OpenGL.error.GLError: GLError( 
    5674 err = 1286, 
    5675 description = b'invalid framebuffer operation', 
    5676 baseOperation = glClear, 
    5677 cArguments = (16640,) 
    5678 ) 
    5679  
    5680 File "src/errorchecker.pyx", line 59, in
    5681 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5682  
    5683 See log for complete Python traceback. 
    5684  
    5685 
    5686 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    5687 
    5688 Traceback (most recent call last): 
    5689 File
    5690 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5691 packages/chimerax/ui/graphics.py", line 54, in event 
    5692 if self.handle_drag_and_drop(event): 
    5693 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5694 File
    5695 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5696 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    5697 mw.dropEvent(event) 
    5698 File
    5699 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5700 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    5701 _open_dropped_file(self.session, p) 
    5702 File
    5703 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5704 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    5705 run(session, 'open %s' % FileNameArg.unparse(path)) 
    5706 File
    5707 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5708 packages/chimerax/core/commands/run.py", line 49, in run 
    5709 results = command.run(text, log=log, return_json=return_json) 
    5710 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5711 File
    5712 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5713 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5714 result = ci.function(session, **kw_args) 
    5715 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5716 File
    5717 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5718 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    5719 models = Command(session, registry=registry).run(provider_cmd_text,
    5720 log=log)[0] 
    5721 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5722 File
    5723 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5724 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5725 result = ci.function(session, **kw_args) 
    5726 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5727 File
    5728 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5729 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    5730 models, status = collated_open(session, None, paths, data_format, _add_models,
    5731 log_errors, 
    5732 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5733 File
    5734 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5735 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    5736 return remember_data_format() 
    5737 ^^^^^^^^^^^^^^^^^^^^^^ 
    5738 File
    5739 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5740 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    5741 models, status = func(*func_args, **func_kw) 
    5742 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5743 File
    5744 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5745 packages/chimerax/map/__init__.py", line 183, in open 
    5746 return open_map(session, path, format=_name, **kw) 
    5747 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5748 File
    5749 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5750 packages/chimerax/map/volume.py", line 3752, in open_map 
    5751 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    5752 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5753 File
    5754 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5755 packages/chimerax/map/volume.py", line 3854, in open_grids 
    5756 v.update_drawings() 
    5757 File
    5758 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5759 packages/chimerax/map/volume.py", line 830, in update_drawings 
    5760 self._update_surfaces() 
    5761 File
    5762 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5763 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    5764 s.update_surface(ro) 
    5765 File
    5766 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5767 packages/chimerax/map/volume.py", line 2212, in update_surface 
    5768 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    5769 File
    5770 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5771 packages/chimerax/map/volume.py", line 122, in message 
    5772 self.message_cb(text, **kw) 
    5773 File
    5774 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5775 packages/chimerax/core/logger.py", line 522, in status 
    5776 StatusLogger.status(self, msg, **kw) 
    5777 File
    5778 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5779 packages/chimerax/core/logger.py", line 220, in status 
    5780 if l.status(msg, color, secondary) and getattr( 
    5781 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5782 File
    5783 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5784 packages/chimerax/ui/gui.py", line 1133, in status 
    5785 sbar.status(msg, color, secondary) 
    5786 File
    5787 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5788 packages/chimerax/ui/statusbar.py", line 164, in status 
    5789 r.draw_background() 
    5790 File
    5791 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5792 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5793 GL.glClear(flags) 
    5794 File "src/errorchecker.pyx", line 59, in
    5795 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5796 OpenGL.error.GLError: GLError( 
    5797 err = 1286, 
    5798 description = b'invalid framebuffer operation', 
    5799 baseOperation = glClear, 
    5800 cArguments = (16640,) 
    5801 ) 
    5802  
    5803 OpenGL.error.GLError: GLError( 
    5804 err = 1286, 
    5805 description = b'invalid framebuffer operation', 
    5806 baseOperation = glClear, 
    5807 cArguments = (16640,) 
    5808 ) 
    5809  
    5810 File "src/errorchecker.pyx", line 59, in
    5811 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5812  
    5813 See log for complete Python traceback. 
    5814  
    5815 
    5816 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    5817 
    5818 Traceback (most recent call last): 
    5819 File
    5820 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5821 packages/chimerax/ui/graphics.py", line 54, in event 
    5822 if self.handle_drag_and_drop(event): 
    5823 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5824 File
    5825 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5826 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    5827 mw.dropEvent(event) 
    5828 File
    5829 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5830 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    5831 _open_dropped_file(self.session, p) 
    5832 File
    5833 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5834 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    5835 run(session, 'open %s' % FileNameArg.unparse(path)) 
    5836 File
    5837 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5838 packages/chimerax/core/commands/run.py", line 49, in run 
    5839 results = command.run(text, log=log, return_json=return_json) 
    5840 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5841 File
    5842 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5843 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5844 result = ci.function(session, **kw_args) 
    5845 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5846 File
    5847 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5848 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    5849 models = Command(session, registry=registry).run(provider_cmd_text,
    5850 log=log)[0] 
    5851 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5852 File
    5853 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5854 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5855 result = ci.function(session, **kw_args) 
    5856 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5857 File
    5858 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5859 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    5860 models, status = collated_open(session, None, paths, data_format, _add_models,
    5861 log_errors, 
    5862 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5863 File
    5864 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5865 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    5866 return remember_data_format() 
    5867 ^^^^^^^^^^^^^^^^^^^^^^ 
    5868 File
    5869 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5870 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    5871 models, status = func(*func_args, **func_kw) 
    5872 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5873 File
    5874 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5875 packages/chimerax/map/__init__.py", line 183, in open 
    5876 return open_map(session, path, format=_name, **kw) 
    5877 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5878 File
    5879 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5880 packages/chimerax/map/volume.py", line 3752, in open_map 
    5881 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    5882 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5883 File
    5884 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5885 packages/chimerax/map/volume.py", line 3854, in open_grids 
    5886 v.update_drawings() 
    5887 File
    5888 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5889 packages/chimerax/map/volume.py", line 830, in update_drawings 
    5890 self._update_surfaces() 
    5891 File
    5892 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5893 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    5894 s.update_surface(ro) 
    5895 File
    5896 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5897 packages/chimerax/map/volume.py", line 2212, in update_surface 
    5898 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    5899 File
    5900 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5901 packages/chimerax/map/volume.py", line 122, in message 
    5902 self.message_cb(text, **kw) 
    5903 File
    5904 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5905 packages/chimerax/core/logger.py", line 522, in status 
    5906 StatusLogger.status(self, msg, **kw) 
    5907 File
    5908 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5909 packages/chimerax/core/logger.py", line 220, in status 
    5910 if l.status(msg, color, secondary) and getattr( 
    5911 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5912 File
    5913 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5914 packages/chimerax/ui/gui.py", line 1133, in status 
    5915 sbar.status(msg, color, secondary) 
    5916 File
    5917 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5918 packages/chimerax/ui/statusbar.py", line 164, in status 
    5919 r.draw_background() 
    5920 File
    5921 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5922 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    5923 GL.glClear(flags) 
    5924 File "src/errorchecker.pyx", line 59, in
    5925 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5926 OpenGL.error.GLError: GLError( 
    5927 err = 1286, 
    5928 description = b'invalid framebuffer operation', 
    5929 baseOperation = glClear, 
    5930 cArguments = (16640,) 
    5931 ) 
    5932  
    5933 OpenGL.error.GLError: GLError( 
    5934 err = 1286, 
    5935 description = b'invalid framebuffer operation', 
    5936 baseOperation = glClear, 
    5937 cArguments = (16640,) 
    5938 ) 
    5939  
    5940 File "src/errorchecker.pyx", line 59, in
    5941 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    5942  
    5943 See log for complete Python traceback. 
    5944  
    5945 
    5946 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    5947 
    5948 Traceback (most recent call last): 
    5949 File
    5950 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5951 packages/chimerax/ui/graphics.py", line 54, in event 
    5952 if self.handle_drag_and_drop(event): 
    5953 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5954 File
    5955 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5956 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    5957 mw.dropEvent(event) 
    5958 File
    5959 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5960 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    5961 _open_dropped_file(self.session, p) 
    5962 File
    5963 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5964 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    5965 run(session, 'open %s' % FileNameArg.unparse(path)) 
    5966 File
    5967 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5968 packages/chimerax/core/commands/run.py", line 49, in run 
    5969 results = command.run(text, log=log, return_json=return_json) 
    5970 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5971 File
    5972 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5973 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5974 result = ci.function(session, **kw_args) 
    5975 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5976 File
    5977 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5978 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    5979 models = Command(session, registry=registry).run(provider_cmd_text,
    5980 log=log)[0] 
    5981 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5982 File
    5983 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5984 packages/chimerax/core/commands/cli.py", line 3237, in run 
    5985 result = ci.function(session, **kw_args) 
    5986 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5987 File
    5988 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5989 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    5990 models, status = collated_open(session, None, paths, data_format, _add_models,
    5991 log_errors, 
    5992 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5993 File
    5994 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5995 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    5996 return remember_data_format() 
    5997 ^^^^^^^^^^^^^^^^^^^^^^ 
    5998 File
    5999 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6000 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    6001 models, status = func(*func_args, **func_kw) 
    6002 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6003 File
    6004 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6005 packages/chimerax/map/__init__.py", line 183, in open 
    6006 return open_map(session, path, format=_name, **kw) 
    6007 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6008 File
    6009 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6010 packages/chimerax/map/volume.py", line 3752, in open_map 
    6011 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    6012 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6013 File
    6014 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6015 packages/chimerax/map/volume.py", line 3854, in open_grids 
    6016 v.update_drawings() 
    6017 File
    6018 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6019 packages/chimerax/map/volume.py", line 830, in update_drawings 
    6020 self._update_surfaces() 
    6021 File
    6022 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6023 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    6024 s.update_surface(ro) 
    6025 File
    6026 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6027 packages/chimerax/map/volume.py", line 2212, in update_surface 
    6028 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    6029 File
    6030 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6031 packages/chimerax/map/volume.py", line 122, in message 
    6032 self.message_cb(text, **kw) 
    6033 File
    6034 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6035 packages/chimerax/core/logger.py", line 522, in status 
    6036 StatusLogger.status(self, msg, **kw) 
    6037 File
    6038 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6039 packages/chimerax/core/logger.py", line 220, in status 
    6040 if l.status(msg, color, secondary) and getattr( 
    6041 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6042 File
    6043 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6044 packages/chimerax/ui/gui.py", line 1133, in status 
    6045 sbar.status(msg, color, secondary) 
    6046 File
    6047 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6048 packages/chimerax/ui/statusbar.py", line 164, in status 
    6049 r.draw_background() 
    6050 File
    6051 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6052 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    6053 GL.glClear(flags) 
    6054 File "src/errorchecker.pyx", line 59, in
    6055 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6056 OpenGL.error.GLError: GLError( 
    6057 err = 1286, 
    6058 description = b'invalid framebuffer operation', 
    6059 baseOperation = glClear, 
    6060 cArguments = (16640,) 
    6061 ) 
    6062  
    6063 OpenGL.error.GLError: GLError( 
    6064 err = 1286, 
    6065 description = b'invalid framebuffer operation', 
    6066 baseOperation = glClear, 
    6067 cArguments = (16640,) 
    6068 ) 
    6069  
    6070 File "src/errorchecker.pyx", line 59, in
    6071 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6072  
    6073 See log for complete Python traceback. 
    6074  
    6075 
    6076 > close #13
    6077 
    6078 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    6079 
    6080 Traceback (most recent call last): 
    6081 File
    6082 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6083 packages/chimerax/ui/graphics.py", line 54, in event 
    6084 if self.handle_drag_and_drop(event): 
    6085 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6086 File
    6087 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6088 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    6089 mw.dropEvent(event) 
    6090 File
    6091 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6092 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    6093 _open_dropped_file(self.session, p) 
    6094 File
    6095 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6096 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    6097 run(session, 'open %s' % FileNameArg.unparse(path)) 
    6098 File
    6099 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6100 packages/chimerax/core/commands/run.py", line 49, in run 
    6101 results = command.run(text, log=log, return_json=return_json) 
    6102 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6103 File
    6104 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6105 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6106 result = ci.function(session, **kw_args) 
    6107 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6108 File
    6109 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6110 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    6111 models = Command(session, registry=registry).run(provider_cmd_text,
    6112 log=log)[0] 
    6113 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6114 File
    6115 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6116 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6117 result = ci.function(session, **kw_args) 
    6118 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6119 File
    6120 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6121 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    6122 models, status = collated_open(session, None, paths, data_format, _add_models,
    6123 log_errors, 
    6124 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6125 File
    6126 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6127 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    6128 return remember_data_format() 
    6129 ^^^^^^^^^^^^^^^^^^^^^^ 
    6130 File
    6131 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6132 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    6133 models, status = func(*func_args, **func_kw) 
    6134 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6135 File
    6136 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6137 packages/chimerax/map/__init__.py", line 183, in open 
    6138 return open_map(session, path, format=_name, **kw) 
    6139 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6140 File
    6141 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6142 packages/chimerax/map/volume.py", line 3752, in open_map 
    6143 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    6144 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6145 File
    6146 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6147 packages/chimerax/map/volume.py", line 3854, in open_grids 
    6148 v.update_drawings() 
    6149 File
    6150 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6151 packages/chimerax/map/volume.py", line 830, in update_drawings 
    6152 self._update_surfaces() 
    6153 File
    6154 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6155 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    6156 s.update_surface(ro) 
    6157 File
    6158 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6159 packages/chimerax/map/volume.py", line 2212, in update_surface 
    6160 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    6161 File
    6162 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6163 packages/chimerax/map/volume.py", line 122, in message 
    6164 self.message_cb(text, **kw) 
    6165 File
    6166 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6167 packages/chimerax/core/logger.py", line 522, in status 
    6168 StatusLogger.status(self, msg, **kw) 
    6169 File
    6170 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6171 packages/chimerax/core/logger.py", line 220, in status 
    6172 if l.status(msg, color, secondary) and getattr( 
    6173 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6174 File
    6175 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6176 packages/chimerax/ui/gui.py", line 1133, in status 
    6177 sbar.status(msg, color, secondary) 
    6178 File
    6179 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6180 packages/chimerax/ui/statusbar.py", line 164, in status 
    6181 r.draw_background() 
    6182 File
    6183 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6184 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    6185 GL.glClear(flags) 
    6186 File "src/errorchecker.pyx", line 59, in
    6187 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6188 OpenGL.error.GLError: GLError( 
    6189 err = 1286, 
    6190 description = b'invalid framebuffer operation', 
    6191 baseOperation = glClear, 
    6192 cArguments = (16640,) 
    6193 ) 
    6194  
    6195 OpenGL.error.GLError: GLError( 
    6196 err = 1286, 
    6197 description = b'invalid framebuffer operation', 
    6198 baseOperation = glClear, 
    6199 cArguments = (16640,) 
    6200 ) 
    6201  
    6202 File "src/errorchecker.pyx", line 59, in
    6203 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6204  
    6205 See log for complete Python traceback. 
    6206  
    6207 
    6208 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    6209 
    6210 Traceback (most recent call last): 
    6211 File
    6212 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6213 packages/chimerax/ui/graphics.py", line 54, in event 
    6214 if self.handle_drag_and_drop(event): 
    6215 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6216 File
    6217 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6218 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    6219 mw.dropEvent(event) 
    6220 File
    6221 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6222 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    6223 _open_dropped_file(self.session, p) 
    6224 File
    6225 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6226 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    6227 run(session, 'open %s' % FileNameArg.unparse(path)) 
    6228 File
    6229 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6230 packages/chimerax/core/commands/run.py", line 49, in run 
    6231 results = command.run(text, log=log, return_json=return_json) 
    6232 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6233 File
    6234 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6235 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6236 result = ci.function(session, **kw_args) 
    6237 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6238 File
    6239 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6240 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    6241 models = Command(session, registry=registry).run(provider_cmd_text,
    6242 log=log)[0] 
    6243 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6244 File
    6245 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6246 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6247 result = ci.function(session, **kw_args) 
    6248 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6249 File
    6250 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6251 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    6252 models, status = collated_open(session, None, paths, data_format, _add_models,
    6253 log_errors, 
    6254 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6255 File
    6256 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6257 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    6258 return remember_data_format() 
    6259 ^^^^^^^^^^^^^^^^^^^^^^ 
    6260 File
    6261 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6262 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    6263 models, status = func(*func_args, **func_kw) 
    6264 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6265 File
    6266 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6267 packages/chimerax/map/__init__.py", line 183, in open 
    6268 return open_map(session, path, format=_name, **kw) 
    6269 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6270 File
    6271 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6272 packages/chimerax/map/volume.py", line 3752, in open_map 
    6273 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    6274 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6275 File
    6276 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6277 packages/chimerax/map/volume.py", line 3854, in open_grids 
    6278 v.update_drawings() 
    6279 File
    6280 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6281 packages/chimerax/map/volume.py", line 830, in update_drawings 
    6282 self._update_surfaces() 
    6283 File
    6284 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6285 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    6286 s.update_surface(ro) 
    6287 File
    6288 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6289 packages/chimerax/map/volume.py", line 2212, in update_surface 
    6290 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    6291 File
    6292 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6293 packages/chimerax/map/volume.py", line 122, in message 
    6294 self.message_cb(text, **kw) 
    6295 File
    6296 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6297 packages/chimerax/core/logger.py", line 522, in status 
    6298 StatusLogger.status(self, msg, **kw) 
    6299 File
    6300 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6301 packages/chimerax/core/logger.py", line 220, in status 
    6302 if l.status(msg, color, secondary) and getattr( 
    6303 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6304 File
    6305 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6306 packages/chimerax/ui/gui.py", line 1133, in status 
    6307 sbar.status(msg, color, secondary) 
    6308 File
    6309 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6310 packages/chimerax/ui/statusbar.py", line 164, in status 
    6311 r.draw_background() 
    6312 File
    6313 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6314 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    6315 GL.glClear(flags) 
    6316 File "src/errorchecker.pyx", line 59, in
    6317 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6318 OpenGL.error.GLError: GLError( 
    6319 err = 1286, 
    6320 description = b'invalid framebuffer operation', 
    6321 baseOperation = glClear, 
    6322 cArguments = (16640,) 
    6323 ) 
    6324  
    6325 OpenGL.error.GLError: GLError( 
    6326 err = 1286, 
    6327 description = b'invalid framebuffer operation', 
    6328 baseOperation = glClear, 
    6329 cArguments = (16640,) 
    6330 ) 
    6331  
    6332 File "src/errorchecker.pyx", line 59, in
    6333 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6334  
    6335 See log for complete Python traceback. 
    6336  
    6337 
    6338 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    6339 
    6340 Failed opening file
    6341 /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc: 
    6342 GLError( 
    6343 err = 1286, 
    6344 description = b'invalid framebuffer operation', 
    6345 baseOperation = glClear, 
    6346 cArguments = (16640,) 
    6347 ) 
    6348 
    6349 > open /Users/a13583/Downloads/cryosparc_P121_J1398_004_volume_map_sharp.mrc
    6350 
    6351 Traceback (most recent call last): 
    6352 File
    6353 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6354 packages/chimerax/ui/graphics.py", line 54, in event 
    6355 if self.handle_drag_and_drop(event): 
    6356 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6357 File
    6358 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6359 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    6360 mw.dropEvent(event) 
    6361 File
    6362 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6363 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    6364 _open_dropped_file(self.session, p) 
    6365 File
    6366 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6367 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    6368 run(session, 'open %s' % FileNameArg.unparse(path)) 
    6369 File
    6370 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6371 packages/chimerax/core/commands/run.py", line 49, in run 
    6372 results = command.run(text, log=log, return_json=return_json) 
    6373 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6374 File
    6375 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6376 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6377 result = ci.function(session, **kw_args) 
    6378 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6379 File
    6380 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6381 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    6382 models = Command(session, registry=registry).run(provider_cmd_text,
    6383 log=log)[0] 
    6384 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6385 File
    6386 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6387 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6388 result = ci.function(session, **kw_args) 
    6389 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6390 File
    6391 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6392 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    6393 models, status = collated_open(session, None, paths, data_format, _add_models,
    6394 log_errors, 
    6395 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6396 File
    6397 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6398 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    6399 return remember_data_format() 
    6400 ^^^^^^^^^^^^^^^^^^^^^^ 
    6401 File
    6402 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6403 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    6404 models, status = func(*func_args, **func_kw) 
    6405 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6406 File
    6407 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6408 packages/chimerax/map/__init__.py", line 183, in open 
    6409 return open_map(session, path, format=_name, **kw) 
    6410 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6411 File
    6412 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6413 packages/chimerax/map/volume.py", line 3752, in open_map 
    6414 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    6415 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6416 File
    6417 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6418 packages/chimerax/map/volume.py", line 3854, in open_grids 
    6419 v.update_drawings() 
    6420 File
    6421 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6422 packages/chimerax/map/volume.py", line 830, in update_drawings 
    6423 self._update_surfaces() 
    6424 File
    6425 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6426 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    6427 s.update_surface(ro) 
    6428 File
    6429 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6430 packages/chimerax/map/volume.py", line 2212, in update_surface 
    6431 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    6432 File
    6433 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6434 packages/chimerax/map/volume.py", line 122, in message 
    6435 self.message_cb(text, **kw) 
    6436 File
    6437 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6438 packages/chimerax/core/logger.py", line 522, in status 
    6439 StatusLogger.status(self, msg, **kw) 
    6440 File
    6441 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6442 packages/chimerax/core/logger.py", line 220, in status 
    6443 if l.status(msg, color, secondary) and getattr( 
    6444 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6445 File
    6446 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6447 packages/chimerax/ui/gui.py", line 1133, in status 
    6448 sbar.status(msg, color, secondary) 
    6449 File
    6450 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6451 packages/chimerax/ui/statusbar.py", line 164, in status 
    6452 r.draw_background() 
    6453 File
    6454 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6455 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    6456 GL.glClear(flags) 
    6457 File "src/errorchecker.pyx", line 59, in
    6458 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6459 OpenGL.error.GLError: GLError( 
    6460 err = 1286, 
    6461 description = b'invalid framebuffer operation', 
    6462 baseOperation = glClear, 
    6463 cArguments = (16640,) 
    6464 ) 
    6465  
    6466 OpenGL.error.GLError: GLError( 
    6467 err = 1286, 
    6468 description = b'invalid framebuffer operation', 
    6469 baseOperation = glClear, 
    6470 cArguments = (16640,) 
    6471 ) 
    6472  
    6473 File "src/errorchecker.pyx", line 59, in
    6474 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6475  
    6476 See log for complete Python traceback. 
    6477  
    6478 
    6479 > open /Users/a13583/Downloads/cryosparc_P121_J1415_002_volume_map_sharp.mrc
    6480 
    6481 Traceback (most recent call last): 
    6482 File
    6483 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6484 packages/chimerax/ui/graphics.py", line 54, in event 
    6485 if self.handle_drag_and_drop(event): 
    6486 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6487 File
    6488 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6489 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    6490 mw.dropEvent(event) 
    6491 File
    6492 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6493 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    6494 _open_dropped_file(self.session, p) 
    6495 File
    6496 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6497 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    6498 run(session, 'open %s' % FileNameArg.unparse(path)) 
    6499 File
    6500 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6501 packages/chimerax/core/commands/run.py", line 49, in run 
    6502 results = command.run(text, log=log, return_json=return_json) 
    6503 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6504 File
    6505 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6506 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6507 result = ci.function(session, **kw_args) 
    6508 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6509 File
    6510 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6511 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    6512 models = Command(session, registry=registry).run(provider_cmd_text,
    6513 log=log)[0] 
    6514 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6515 File
    6516 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6517 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6518 result = ci.function(session, **kw_args) 
    6519 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6520 File
    6521 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6522 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    6523 models, status = collated_open(session, None, paths, data_format, _add_models,
    6524 log_errors, 
    6525 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6526 File
    6527 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6528 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    6529 return remember_data_format() 
    6530 ^^^^^^^^^^^^^^^^^^^^^^ 
    6531 File
    6532 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6533 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    6534 models, status = func(*func_args, **func_kw) 
    6535 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6536 File
    6537 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6538 packages/chimerax/map/__init__.py", line 183, in open 
    6539 return open_map(session, path, format=_name, **kw) 
    6540 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6541 File
    6542 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6543 packages/chimerax/map/volume.py", line 3752, in open_map 
    6544 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    6545 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6546 File
    6547 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6548 packages/chimerax/map/volume.py", line 3854, in open_grids 
    6549 v.update_drawings() 
    6550 File
    6551 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6552 packages/chimerax/map/volume.py", line 830, in update_drawings 
    6553 self._update_surfaces() 
    6554 File
    6555 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6556 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    6557 s.update_surface(ro) 
    6558 File
    6559 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6560 packages/chimerax/map/volume.py", line 2212, in update_surface 
    6561 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    6562 File
    6563 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6564 packages/chimerax/map/volume.py", line 122, in message 
    6565 self.message_cb(text, **kw) 
    6566 File
    6567 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6568 packages/chimerax/core/logger.py", line 522, in status 
    6569 StatusLogger.status(self, msg, **kw) 
    6570 File
    6571 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6572 packages/chimerax/core/logger.py", line 220, in status 
    6573 if l.status(msg, color, secondary) and getattr( 
    6574 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6575 File
    6576 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6577 packages/chimerax/ui/gui.py", line 1133, in status 
    6578 sbar.status(msg, color, secondary) 
    6579 File
    6580 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6581 packages/chimerax/ui/statusbar.py", line 164, in status 
    6582 r.draw_background() 
    6583 File
    6584 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6585 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    6586 GL.glClear(flags) 
    6587 File "src/errorchecker.pyx", line 59, in
    6588 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6589 OpenGL.error.GLError: GLError( 
    6590 err = 1286, 
    6591 description = b'invalid framebuffer operation', 
    6592 baseOperation = glClear, 
    6593 cArguments = (16640,) 
    6594 ) 
    6595  
    6596 OpenGL.error.GLError: GLError( 
    6597 err = 1286, 
    6598 description = b'invalid framebuffer operation', 
    6599 baseOperation = glClear, 
    6600 cArguments = (16640,) 
    6601 ) 
    6602  
    6603 File "src/errorchecker.pyx", line 59, in
    6604 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6605  
    6606 See log for complete Python traceback. 
    6607  
    6608 
    6609 > open /Users/a13583/Downloads/cryosparc_P121_J1415_002_volume_map_sharp.mrc
    6610 
    6611 Failed opening file
    6612 /Users/a13583/Downloads/cryosparc_P121_J1415_002_volume_map_sharp.mrc: 
    6613 GLError( 
    6614 err = 1286, 
    6615 description = b'invalid framebuffer operation', 
    6616 baseOperation = glClear, 
    6617 cArguments = (16640,) 
    6618 ) 
    6619 
    6620 > open /Users/a13583/Downloads/cryosparc_P121_J1415_002_volume_map_sharp.mrc
    6621 
    6622 Failed opening file
    6623 /Users/a13583/Downloads/cryosparc_P121_J1415_002_volume_map_sharp.mrc: 
    6624 GLError( 
    6625 err = 1286, 
    6626 description = b'invalid framebuffer operation', 
    6627 baseOperation = glClear, 
    6628 cArguments = (16640,) 
    6629 ) 
    6630 
    6631 > open /Users/a13583/Downloads/cryosparc_P121_J1415_002_volume_map_sharp.mrc
    6632 
    6633 Traceback (most recent call last): 
    6634 File
    6635 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6636 packages/chimerax/ui/graphics.py", line 54, in event 
    6637 if self.handle_drag_and_drop(event): 
    6638 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6639 File
    6640 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6641 packages/chimerax/ui/graphics.py", line 124, in handle_drag_and_drop 
    6642 mw.dropEvent(event) 
    6643 File
    6644 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6645 packages/chimerax/ui/gui.py", line 816, in dropEvent 
    6646 _open_dropped_file(self.session, p) 
    6647 File
    6648 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6649 packages/chimerax/ui/gui.py", line 2202, in _open_dropped_file 
    6650 run(session, 'open %s' % FileNameArg.unparse(path)) 
    6651 File
    6652 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6653 packages/chimerax/core/commands/run.py", line 49, in run 
    6654 results = command.run(text, log=log, return_json=return_json) 
    6655 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6656 File
    6657 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6658 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6659 result = ci.function(session, **kw_args) 
    6660 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6661 File
    6662 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6663 packages/chimerax/open_command/cmd.py", line 132, in cmd_open 
    6664 models = Command(session, registry=registry).run(provider_cmd_text,
    6665 log=log)[0] 
    6666 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6667 File
    6668 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6669 packages/chimerax/core/commands/cli.py", line 3237, in run 
    6670 result = ci.function(session, **kw_args) 
    6671 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6672 File
    6673 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6674 packages/chimerax/open_command/cmd.py", line 194, in provider_open 
    6675 models, status = collated_open(session, None, paths, data_format, _add_models,
    6676 log_errors, 
    6677 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6678 File
    6679 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6680 packages/chimerax/open_command/cmd.py", line 527, in collated_open 
    6681 return remember_data_format() 
    6682 ^^^^^^^^^^^^^^^^^^^^^^ 
    6683 File
    6684 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6685 packages/chimerax/open_command/cmd.py", line 498, in remember_data_format 
    6686 models, status = func(*func_args, **func_kw) 
    6687 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6688 File
    6689 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6690 packages/chimerax/map/__init__.py", line 183, in open 
    6691 return open_map(session, path, format=_name, **kw) 
    6692 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6693 File
    6694 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6695 packages/chimerax/map/volume.py", line 3752, in open_map 
    6696 smodels, smsg = open_grids(session, sgrids, name, **kw) 
    6697 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6698 File
    6699 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6700 packages/chimerax/map/volume.py", line 3854, in open_grids 
    6701 v.update_drawings() 
    6702 File
    6703 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6704 packages/chimerax/map/volume.py", line 830, in update_drawings 
    6705 self._update_surfaces() 
    6706 File
    6707 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6708 packages/chimerax/map/volume.py", line 853, in _update_surfaces 
    6709 s.update_surface(ro) 
    6710 File
    6711 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6712 packages/chimerax/map/volume.py", line 2212, in update_surface 
    6713 v.message('Computing %s surface, level %.3g' % (v.data.name, level)) 
    6714 File
    6715 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6716 packages/chimerax/map/volume.py", line 122, in message 
    6717 self.message_cb(text, **kw) 
    6718 File
    6719 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6720 packages/chimerax/core/logger.py", line 522, in status 
    6721 StatusLogger.status(self, msg, **kw) 
    6722 File
    6723 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6724 packages/chimerax/core/logger.py", line 220, in status 
    6725 if l.status(msg, color, secondary) and getattr( 
    6726 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    6727 File
    6728 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6729 packages/chimerax/ui/gui.py", line 1133, in status 
    6730 sbar.status(msg, color, secondary) 
    6731 File
    6732 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6733 packages/chimerax/ui/statusbar.py", line 164, in status 
    6734 r.draw_background() 
    6735 File
    6736 "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    6737 packages/chimerax/graphics/opengl.py", line 1238, in draw_background 
    6738 GL.glClear(flags) 
    6739 File "src/errorchecker.pyx", line 59, in
    6740 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6741 OpenGL.error.GLError: GLError( 
    6742 err = 1286, 
    6743 description = b'invalid framebuffer operation', 
    6744 baseOperation = glClear, 
    6745 cArguments = (16640,) 
    6746 ) 
    6747  
    6748 OpenGL.error.GLError: GLError( 
    6749 err = 1286, 
    6750 description = b'invalid framebuffer operation', 
    6751 baseOperation = glClear, 
    6752 cArguments = (16640,) 
    6753 ) 
    6754  
    6755 File "src/errorchecker.pyx", line 59, in
    6756 OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError 
    6757  
    6758 See log for complete Python traceback. 
    6759  
     2867[deleted to fit within ticket limits]
    67602868
    67612869> open /Users/a13583/Downloads/cryosparc_P121_J1415_002_volume_map_sharp.mrc