Ticket #18853: make.out

File make.out, 4.7 MB (added by Tom Goddard, 7 months ago)

make build-from-scratch output on vizvault.cgl.ucsf.edu.

Line 
1make -C prereqs clean
2make[1]: Entering directory '/home/goddard/ucsf/chimerax/prereqs'
3make -C win32 clean
4make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/win32'
5make[2]: Nothing to be done for 'clean'.
6make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/win32'
7make -C ffmpeg clean
8make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/ffmpeg'
9rm -rf ffmpeg-3.2.4-Windows.exe ffmpeg-3.2.4-win64-static.zip
10make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/ffmpeg'
11make -C ambertools clean
12make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/ambertools'
13rm -rf /home/goddard/ucsf/chimerax/build/tmp/AmberTools20 ambertools-20-Windows.tar.bz2
14make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/ambertools'
15make -C pips clean
16make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/pips'
17rm -f pip.log
18rm -f app_requirements.txt
19make -C package_checker clean
20make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/pips/package_checker'
21rm -rf __pycache__
22make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/pips/package_checker'
23make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/pips'
24make -C PyQt clean
25make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
26make -f Makefile.wheel.qt6 BASE_VERSION=6.9 PYQT_MINOR_VERSION=1 QT_MINOR_VERSION=2 PYQTWE_MINOR_VERSION=0 PYQT_LICENSE=gpl clean
27make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
28rm -f pip.log
29make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
30make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
31make -C Python clean
32make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/Python'
33rm -rf python-3.11.9-win-amd64.tar.bz2
34make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/Python'
35make[1]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs'
36make -C src clean
37make[1]: Entering directory '/home/goddard/ucsf/chimerax/src'
38make -C bundles clean
39make[2]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles'
40make -C add_charge clean
41make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
42rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
43if [ -n "" ]; then \
44 rm -rf ; \
45fi
46make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
47make -C addh clean
48make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
49rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
50if [ -n "" ]; then \
51 rm -rf ; \
52fi
53make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
54make -C alignment_algs clean
55make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
56rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
57if [ -n "src/NeedlemanWunsch/__pycache__" ]; then \
58 rm -rf src/NeedlemanWunsch/__pycache__; \
59fi
60make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
61make -C alignment_headers clean
62make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
63rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
64if [ -n "al2co/al2co.obj al2co/al2co.o src/bin/al2co.exe src/bin/al2co" ]; then \
65 rm -rf al2co/al2co.obj al2co/al2co.o src/bin/al2co.exe src/bin/al2co; \
66fi
67make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
68make -C alphafold clean
69make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
70rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
71if [ -n "" ]; then \
72 rm -rf ; \
73fi
74make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
75make -C altloc_explorer clean
76make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
77rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
78if [ -n "" ]; then \
79 rm -rf ; \
80fi
81make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
82make -C amber_info clean
83make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
84rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
85if [ -n "" ]; then \
86 rm -rf ; \
87fi
88make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
89make -C aniso clean
90make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
91rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
92if [ -n "" ]; then \
93 rm -rf ; \
94fi
95make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
96make -C arrays clean
97make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
98rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
99if [ -n "src/lib src/include _arrays/*.o" ]; then \
100 rm -rf src/lib src/include _arrays/*.o; \
101fi
102make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
103make -C atom_search clean
104make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
105rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__ src/*.pyd
106if [ -n "search_cpp/ast.cpp" ]; then \
107 rm -rf search_cpp/ast.cpp; \
108fi
109make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
110make -C atomic clean
111make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
112rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
113if [ -n "" ]; then \
114 rm -rf ; \
115fi
116make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
117make -C atomic_lib clean
118make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
119rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
120if [ -n "src/lib src/include src/data atomic_cpp/*/*.obj atomic_cpp/atomstruct_cpp/tmpl/*.obj" ]; then \
121 rm -rf src/lib src/include src/data atomic_cpp/*/*.obj atomic_cpp/atomstruct_cpp/tmpl/*.obj; \
122fi
123make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
124make -C axes_planes clean
125make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
126rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
127if [ -n "" ]; then \
128 rm -rf ; \
129fi
130make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
131make -C basic_actions clean
132make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
133rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
134if [ -n "" ]; then \
135 rm -rf ; \
136fi
137make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
138make -C bild clean
139make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
140rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
141if [ -n "" ]; then \
142 rm -rf ; \
143fi
144make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
145make -C blastprotein clean
146make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
147rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
148if [ -n "" ]; then \
149 rm -rf ; \
150fi
151make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
152make -C boltz clean
153make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
154rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
155if [ -n "" ]; then \
156 rm -rf ; \
157fi
158make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
159make -C bond_rot clean
160make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
161rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
162if [ -n "" ]; then \
163 rm -rf ; \
164fi
165make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
166make -C bug_reporter clean
167make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
168rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
169if [ -n "" ]; then \
170 rm -rf ; \
171fi
172make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
173make -C build_structure clean
174make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
175rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
176if [ -n "" ]; then \
177 rm -rf ; \
178fi
179make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
180make -C bumps clean
181make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
182rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
183if [ -n "" ]; then \
184 rm -rf ; \
185fi
186make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
187make -C buttons clean
188make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
189rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
190if [ -n "" ]; then \
191 rm -rf ; \
192fi
193make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
194make -C cage_builder clean
195make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
196rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
197if [ -n "" ]; then \
198 rm -rf ; \
199fi
200make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
201make -C cellpack clean
202make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
203rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
204if [ -n "" ]; then \
205 rm -rf ; \
206fi
207make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
208make -C centroids clean
209make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
210rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
211if [ -n "" ]; then \
212 rm -rf ; \
213fi
214make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
215make -C change_chains clean
216make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
217rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
218if [ -n "" ]; then \
219 rm -rf ; \
220fi
221make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
222make -C check_waters clean
223make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
224rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
225if [ -n "" ]; then \
226 rm -rf ; \
227fi
228make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
229make -C chem_group clean
230make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
231rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
232if [ -n "bundle_info.xml src/__init__.py src/_chem_group*.pyd" ]; then \
233 rm -rf bundle_info.xml src/__init__.py src/_chem_group*.pyd; \
234fi
235make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
236make -C clashes clean
237make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
238rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
239if [ -n "" ]; then \
240 rm -rf ; \
241fi
242make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
243make -C cmd_line clean
244make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
245rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
246if [ -n "" ]; then \
247 rm -rf ; \
248fi
249make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
250make -C color_actions clean
251make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
252rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
253if [ -n "" ]; then \
254 rm -rf ; \
255fi
256make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
257make -C color_globe clean
258make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
259rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
260if [ -n "" ]; then \
261 rm -rf ; \
262fi
263make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
264make -C color_key clean
265make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
266rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
267if [ -n "" ]; then \
268 rm -rf ; \
269fi
270make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
271make -C connect_structure clean
272make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
273rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
274if [ -n "src/_cs.*" ]; then \
275 rm -rf src/_cs.*; \
276fi
277make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
278make -C core_formats clean
279make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
280rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
281if [ -n "" ]; then \
282 rm -rf ; \
283fi
284make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
285make -C coulombic clean
286make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
287rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
288if [ -n "" ]; then \
289 rm -rf ; \
290fi
291make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
292make -C crosslinks clean
293make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
294rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
295if [ -n "" ]; then \
296 rm -rf ; \
297fi
298make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
299make -C crystal clean
300make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
301rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
302if [ -n "" ]; then \
303 rm -rf ; \
304fi
305make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
306make -C crystal_contacts clean
307make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
308rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
309if [ -n "" ]; then \
310 rm -rf ; \
311fi
312make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
313make -C data_formats clean
314make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
315rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
316if [ -n "" ]; then \
317 rm -rf ; \
318fi
319make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
320make -C dicom clean
321make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
322rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
323if [ -n "" ]; then \
324 rm -rf ; \
325fi
326make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
327make -C dist_monitor clean
328make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
329rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
330if [ -n "" ]; then \
331 rm -rf ; \
332fi
333make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
334make -C dock_prep clean
335make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
336rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
337if [ -n "" ]; then \
338 rm -rf ; \
339fi
340make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
341make -C dssp clean
342make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
343rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
344if [ -n "" ]; then \
345 rm -rf ; \
346fi
347make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
348make -C emdb_sff clean
349make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
350rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
351if [ -n "" ]; then \
352 rm -rf ; \
353fi
354make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
355make -C esmfold clean
356make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
357rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
358if [ -n "" ]; then \
359 rm -rf ; \
360fi
361make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
362make -C file_history clean
363make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
364rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
365if [ -n "" ]; then \
366 rm -rf ; \
367fi
368make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
369make -C function_key clean
370make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
371rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
372if [ -n "" ]; then \
373 rm -rf ; \
374fi
375make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
376make -C geometry clean
377make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
378rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
379if [ -n "src/_geometry*.pyd" ]; then \
380 rm -rf src/_geometry*.pyd; \
381fi
382make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
383make -C gltf clean
384make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
385rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
386if [ -n "" ]; then \
387 rm -rf ; \
388fi
389make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
390make -C graphics clean
391make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
392rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
393if [ -n "" ]; then \
394 rm -rf ; \
395fi
396make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
397make -C hbonds clean
398make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
399rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
400if [ -n "" ]; then \
401 rm -rf ; \
402fi
403make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
404make -C help_viewer clean
405make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
406rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
407if [ -n "" ]; then \
408 rm -rf ; \
409fi
410make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
411make -C hkcage clean
412make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
413rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
414if [ -n "" ]; then \
415 rm -rf ; \
416fi
417make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
418make -C ihm clean
419make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
420rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
421if [ -n "" ]; then \
422 rm -rf ; \
423fi
424make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
425make -C image_formats clean
426make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
427rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
428if [ -n "" ]; then \
429 rm -rf ; \
430fi
431make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
432make -C imod clean
433make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
434rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
435if [ -n "" ]; then \
436 rm -rf ; \
437fi
438make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
439make -C interfaces clean
440make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
441rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
442if [ -n "" ]; then \
443 rm -rf ; \
444fi
445make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
446make -C items_inspection clean
447make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
448rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
449if [ -n "" ]; then \
450 rm -rf ; \
451fi
452make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
453make -C io clean
454make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/io'
455rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
456if [ -n "" ]; then \
457 rm -rf ; \
458fi
459make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/io'
460make -C label clean
461make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/label'
462rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
463if [ -n "" ]; then \
464 rm -rf ; \
465fi
466make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/label'
467make -C iupac clean
468make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
469rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
470if [ -n "" ]; then \
471 rm -rf ; \
472fi
473make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
474make -C kvfinder clean
475make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
476rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
477if [ -n "" ]; then \
478 rm -rf ; \
479fi
480make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
481make -C list_info clean
482make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
483rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
484if [ -n "" ]; then \
485 rm -rf ; \
486fi
487make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
488make -C log clean
489make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/log'
490rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
491if [ -n "" ]; then \
492 rm -rf ; \
493fi
494make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/log'
495make -C looking_glass clean
496make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
497rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
498if [ -n "src/lib" ]; then \
499 rm -rf src/lib; \
500fi
501make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
502make -C maestro clean
503make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
504rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
505if [ -n "" ]; then \
506 rm -rf ; \
507fi
508make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
509make -C map clean
510make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map'
511rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
512if [ -n "" ]; then \
513 rm -rf ; \
514fi
515make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map'
516make -C map_data clean
517make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
518rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
519if [ -n "" ]; then \
520 rm -rf ; \
521fi
522make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
523make -C map_eraser clean
524make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
525rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
526if [ -n "" ]; then \
527 rm -rf ; \
528fi
529make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
530make -C map_filter clean
531make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
532rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
533if [ -n "" ]; then \
534 rm -rf ; \
535fi
536make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
537make -C map_fit clean
538make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
539rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
540if [ -n "" ]; then \
541 rm -rf ; \
542fi
543make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
544make -C map_series clean
545make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
546rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
547if [ -n "" ]; then \
548 rm -rf ; \
549fi
550make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
551make -C markers clean
552make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
553rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
554if [ -n "" ]; then \
555 rm -rf ; \
556fi
557make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
558make -C mask clean
559make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
560rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
561if [ -n "src/_mask*.pyd" ]; then \
562 rm -rf src/_mask*.pyd; \
563fi
564make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
565make -C match_maker clean
566make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
567rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
568if [ -n "" ]; then \
569 rm -rf ; \
570fi
571make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
572make -C mcopy clean
573make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
574rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
575if [ -n "" ]; then \
576 rm -rf ; \
577fi
578make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
579make -C md_crds clean
580make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
581make -C gromacs clean
582make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
583rm -rf xdrfile-1.1.4
584make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
585rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
586if [ -n "src/dcd/MDToolsMarch97/__pycache__ src/dcd/__pycache src/_gromacs*.pyd" ]; then \
587 rm -rf src/dcd/MDToolsMarch97/__pycache__ src/dcd/__pycache src/_gromacs*.pyd; \
588fi
589make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
590make -C medical_toolbar clean
591make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
592rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
593if [ -n "" ]; then \
594 rm -rf ; \
595fi
596make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
597make -C meeting clean
598make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
599rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
600if [ -n "" ]; then \
601 rm -rf ; \
602fi
603make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
604make -C minimize clean
605make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
606rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
607if [ -n "" ]; then \
608 rm -rf ; \
609fi
610make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
611make -C mlp clean
612make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
613rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
614if [ -n "src/_mlp*.pyd" ]; then \
615 rm -rf src/_mlp*.pyd; \
616fi
617make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
618make -C model_series clean
619make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
620rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
621if [ -n "" ]; then \
622 rm -rf ; \
623fi
624make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
625make -C mmcif clean
626make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
627make -C mmcif_cpp clean
628make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp'
629cd readcif_cpp; make clean
630make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp'
631make -C cifgrep clean
632make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp/cifgrep'
633rm -f cifgrep.exe cifgrep.obj cifgrep.man
634make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp/cifgrep'
635rm -f libreadcif.lib readcif.obj
636rm -f libreadcif.pdb vc*.pdb
637make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp'
638rm -rf _mmcif.pyd mmcif.obj template.obj corecif.obj _mmcif.obj include lib
639rm -f _mmcif.pyd.manifest _mmcif.{lib,exp,ilk,pdb} vc*.pdb
640make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp'
641rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
642if [ -n "" ]; then \
643 rm -rf ; \
644fi
645make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
646make -C mmtf clean
647make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
648rm -rf mmtf-cpp-1.1.0 msgpack-c-cpp-4.1.2 build dist *.egg-info src/__pycache__ src/*/__pycache__
649if [ -n "" ]; then \
650 rm -rf ; \
651fi
652make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
653make -C model_archive clean
654make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
655rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
656if [ -n "" ]; then \
657 rm -rf ; \
658fi
659make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
660make -C model_panel clean
661make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
662rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
663if [ -n "" ]; then \
664 rm -rf ; \
665fi
666make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
667make -C modeller clean
668make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
669rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
670if [ -n "" ]; then \
671 rm -rf ; \
672fi
673make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
674make -C mol2 clean
675make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
676rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
677if [ -n "" ]; then \
678 rm -rf ; \
679fi
680make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
681make -C mole clean
682make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
683rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
684if [ -n "" ]; then \
685 rm -rf ; \
686fi
687make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
688make -C morph clean
689make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
690rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
691if [ -n "src/_morph*.pyd" ]; then \
692 rm -rf src/_morph*.pyd; \
693fi
694make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
695make -C mouse_modes clean
696make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
697rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
698if [ -n "" ]; then \
699 rm -rf ; \
700fi
701make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
702make -C movie clean
703make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
704rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
705if [ -n "" ]; then \
706 rm -rf ; \
707fi
708make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
709make -C mutation_scores clean
710make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
711rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
712if [ -n "" ]; then \
713 rm -rf ; \
714fi
715make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
716make -C nmrstar clean
717make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
718rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
719if [ -n "" ]; then \
720 rm -rf ; \
721fi
722make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
723make -C neuron clean
724make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
725rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
726if [ -n "src/_stl*.pyd" ]; then \
727 rm -rf src/_stl*.pyd; \
728fi
729make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
730make -C nifti clean
731make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
732rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
733if [ -n "" ]; then \
734 rm -rf ; \
735fi
736make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
737make -C nrrd clean
738make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
739rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
740if [ -n "" ]; then \
741 rm -rf ; \
742fi
743make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
744make -C nucleotides clean
745make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
746rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
747if [ -n "" ]; then \
748 rm -rf ; \
749fi
750make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
751make -C open_command clean
752make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
753rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
754if [ -n "" ]; then \
755 rm -rf ; \
756fi
757make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
758make -C orthopick clean
759make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
760rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
761if [ -n "" ]; then \
762 rm -rf ; \
763fi
764make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
765make -C pdb clean
766make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
767rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
768if [ -n "src/*.pyd pdbio_cpp/PDBio.o* src/*.a" ]; then \
769 rm -rf src/*.pyd pdbio_cpp/PDBio.o* src/*.a; \
770fi
771make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
772make -C pdb_bio clean
773make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
774rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
775if [ -n "" ]; then \
776 rm -rf ; \
777fi
778make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
779make -C pdb_lib clean
780make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
781rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
782if [ -n "src/lib src/include src/*.pyd connect_cpp/connect.o* " ]; then \
783 rm -rf src/lib src/include src/*.pyd connect_cpp/connect.o* ; \
784fi
785make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
786make -C pdb_matrices clean
787make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
788rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
789if [ -n "" ]; then \
790 rm -rf ; \
791fi
792make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
793make -C pick_blobs clean
794make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
795rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
796if [ -n "" ]; then \
797 rm -rf ; \
798fi
799make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
800make -C positions clean
801make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
802rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
803if [ -n "" ]; then \
804 rm -rf ; \
805fi
806make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
807make -C preset_mgr clean
808make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
809rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
810if [ -n "" ]; then \
811 rm -rf ; \
812fi
813make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
814make -C profile_grids clean
815make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
816rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
817if [ -n "" ]; then \
818 rm -rf ; \
819fi
820make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
821make -C pubchem clean
822make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
823rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
824if [ -n "" ]; then \
825 rm -rf ; \
826fi
827make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
828make -C read_pbonds clean
829make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
830rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
831if [ -n "" ]; then \
832 rm -rf ; \
833fi
834make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
835make -C registration clean
836make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
837rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
838if [ -n "" ]; then \
839 rm -rf ; \
840fi
841make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
842make -C remote_control clean
843make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
844rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
845if [ -n "" ]; then \
846 rm -rf ; \
847fi
848make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
849make -C render_by_attr clean
850make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
851rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
852if [ -n "" ]; then \
853 rm -rf ; \
854fi
855make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
856make -C renumber_residues clean
857make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
858rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
859if [ -n "" ]; then \
860 rm -rf ; \
861fi
862make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
863make -C rest_server clean
864make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
865rm -rf src/server.pem
866rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
867if [ -n "" ]; then \
868 rm -rf ; \
869fi
870make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
871make -C residue_fit clean
872make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
873rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
874if [ -n "" ]; then \
875 rm -rf ; \
876fi
877make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
878make -C rna_layout clean
879make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
880rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
881if [ -n "" ]; then \
882 rm -rf ; \
883fi
884make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
885make -C rotamers clean
886make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
887rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
888if [ -n "" ]; then \
889 rm -rf ; \
890fi
891make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
892make -C rotamer_libs clean
893make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs'
894make -C Dunbrack clean
895make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
896rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
897if [ -n "" ]; then \
898 rm -rf ; \
899fi
900make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
901make -C Dynameomics clean
902make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
903rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
904if [ -n "" ]; then \
905 rm -rf ; \
906fi
907make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
908make -C Richardson clean
909make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
910rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
911if [ -n "" ]; then \
912 rm -rf ; \
913fi
914make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
915make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs'
916make -C save_command clean
917make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
918rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
919if [ -n "" ]; then \
920 rm -rf ; \
921fi
922make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
923make -C scenes clean
924make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
925rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
926if [ -n "" ]; then \
927 rm -rf ; \
928fi
929make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
930make -C scheme_mgr clean
931make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
932rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
933if [ -n "" ]; then \
934 rm -rf ; \
935fi
936make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
937make -C sdf clean
938make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
939rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
940if [ -n "" ]; then \
941 rm -rf ; \
942fi
943make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
944make -C sel_inspector clean
945make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
946rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
947if [ -n "" ]; then \
948 rm -rf ; \
949fi
950make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
951make -C segger clean
952make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segger'
953rm -rf seggerx
954make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segger'
955make -C segment clean
956make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
957rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
958if [ -n "src/_segment*.pyd" ]; then \
959 rm -rf src/_segment*.pyd; \
960fi
961make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
962make -C segmentations clean
963make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
964rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
965if [ -n "" ]; then \
966 rm -rf ; \
967fi
968make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
969make -C seqalign clean
970make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
971rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
972if [ -n "src/io/__pycache__" ]; then \
973 rm -rf src/io/__pycache__; \
974fi
975make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
976make -C seq_view clean
977make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
978rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
979if [ -n "" ]; then \
980 rm -rf ; \
981fi
982make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
983make -C shape clean
984make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
985rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
986if [ -n "" ]; then \
987 rm -rf ; \
988fi
989make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
990make -C shell clean
991make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
992rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
993if [ -n "" ]; then \
994 rm -rf ; \
995fi
996make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
997make -C shortcuts clean
998make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
999rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1000if [ -n "" ]; then \
1001 rm -rf ; \
1002fi
1003make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
1004make -C show_sequences clean
1005make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
1006rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1007if [ -n "" ]; then \
1008 rm -rf ; \
1009fi
1010make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
1011make -C sideview clean
1012make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
1013rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1014if [ -n "" ]; then \
1015 rm -rf ; \
1016fi
1017make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
1018make -C sim_matrices clean
1019make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
1020rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1021if [ -n "" ]; then \
1022 rm -rf ; \
1023fi
1024make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
1025make -C similarstructures clean
1026make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
1027rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1028if [ -n "" ]; then \
1029 rm -rf ; \
1030fi
1031make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
1032make -C smiles clean
1033make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
1034rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1035if [ -n "" ]; then \
1036 rm -rf ; \
1037fi
1038make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
1039make -C smooth_lines clean
1040make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
1041rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1042if [ -n "" ]; then \
1043 rm -rf ; \
1044fi
1045make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
1046make -C spacenavigator clean
1047make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
1048rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1049if [ -n "" ]; then \
1050 rm -rf ; \
1051fi
1052make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
1053make -C std_commands clean
1054make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
1055rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1056if [ -n "" ]; then \
1057 rm -rf ; \
1058fi
1059make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
1060make -C stl clean
1061make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
1062rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1063if [ -n "src/_stl*.pyd" ]; then \
1064 rm -rf src/_stl*.pyd; \
1065fi
1066make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
1067make -C storm clean
1068make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
1069rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1070if [ -n "" ]; then \
1071 rm -rf ; \
1072fi
1073make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
1074make -C struct_measure clean
1075make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
1076rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1077if [ -n "" ]; then \
1078 rm -rf ; \
1079fi
1080make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
1081make -C struts clean
1082make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
1083rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1084if [ -n "" ]; then \
1085 rm -rf ; \
1086fi
1087make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
1088make -C surface clean
1089make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
1090rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1091if [ -n "" ]; then \
1092 rm -rf ; \
1093fi
1094make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
1095make -C swapaa clean
1096make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
1097rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1098if [ -n "" ]; then \
1099 rm -rf ; \
1100fi
1101make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
1102make -C swap_res clean
1103make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
1104rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1105if [ -n "" ]; then \
1106 rm -rf ; \
1107fi
1108make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
1109make -C tape_measure clean
1110make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
1111rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1112if [ -n "" ]; then \
1113 rm -rf ; \
1114fi
1115make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
1116make -C task_manager clean
1117make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
1118rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1119if [ -n "" ]; then \
1120 rm -rf ; \
1121fi
1122make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
1123make -C test clean
1124make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/test'
1125rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1126if [ -n "exectest/exectest.o exectest/exectest.obj src/bin/exectest*" ]; then \
1127 rm -rf exectest/exectest.o exectest/exectest.obj src/bin/exectest*; \
1128fi
1129make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/test'
1130make -C toolbar clean
1131make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
1132rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1133if [ -n "" ]; then \
1134 rm -rf ; \
1135fi
1136make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
1137make -C topography clean
1138make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
1139rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1140if [ -n "" ]; then \
1141 rm -rf ; \
1142fi
1143make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
1144make -C to_quest clean
1145make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
1146rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1147if [ -n "" ]; then \
1148 rm -rf ; \
1149fi
1150make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
1151make -C tug clean
1152make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
1153rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1154if [ -n "" ]; then \
1155 rm -rf ; \
1156fi
1157make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
1158make -C ui clean
1159make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
1160rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1161if [ -n "src/about.html src/*/__pycache__" ]; then \
1162 rm -rf src/about.html src/*/__pycache__; \
1163fi
1164make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
1165make -C umap clean
1166make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
1167rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1168if [ -n "" ]; then \
1169 rm -rf ; \
1170fi
1171make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
1172make -C uniprot clean
1173make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
1174rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1175if [ -n "" ]; then \
1176 rm -rf ; \
1177fi
1178make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
1179make -C unit_cell clean
1180make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
1181rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1182if [ -n "" ]; then \
1183 rm -rf ; \
1184fi
1185make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
1186make -C viewdock clean
1187make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
1188rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1189if [ -n "" ]; then \
1190 rm -rf ; \
1191fi
1192make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
1193make -C viperdb clean
1194make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
1195rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1196if [ -n "" ]; then \
1197 rm -rf ; \
1198fi
1199make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
1200make -C vive clean
1201make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
1202rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1203if [ -n "" ]; then \
1204 rm -rf ; \
1205fi
1206make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
1207make -C volume_menu clean
1208make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
1209rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1210if [ -n "" ]; then \
1211 rm -rf ; \
1212fi
1213make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
1214make -C vrml clean
1215make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
1216rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1217if [ -n "" ]; then \
1218 rm -rf ; \
1219fi
1220make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
1221make -C vtk clean
1222make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
1223rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1224if [ -n "" ]; then \
1225 rm -rf ; \
1226fi
1227make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
1228make -C wavefront_obj clean
1229make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
1230rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1231if [ -n "" ]; then \
1232 rm -rf ; \
1233fi
1234make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
1235make -C webcam clean
1236make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
1237rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1238if [ -n "src/_webcam*.pyd" ]; then \
1239 rm -rf src/_webcam*.pyd; \
1240fi
1241make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
1242make -C webservices clean
1243make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
1244rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1245if [ -n "" ]; then \
1246 rm -rf ; \
1247fi
1248make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
1249make -C zone clean
1250make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
1251rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1252if [ -n "" ]; then \
1253 rm -rf ; \
1254fi
1255make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
1256make -C core clean
1257make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core'
1258/bin/bash: line 1: /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe: No such file or directory
1259rm -rf __pycache__ src/__pycache__ build dist *.egg-info src/_serialize.cpp \
1260 src/buildinfo.py src/commands/_atomspec.py src/toolshed/__pycache__ \
1261 src/lib/* core_cpp/*/*.a core_cpp/*/*.o src/include src/*.so \
1262 chutil_cpp logger_cpp ioutil_cpp mac_util_cpp toolshed commands \
1263 _serialize.cpp buildinfo.py setup.py
1264make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core'
1265make -C bundle_builder clean
1266make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
1267rm -rf src/__pycache__ build dist *.egg-info
1268make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
1269make -C toolshed_utils clean
1270make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
1271rm -rf src/__pycache__ build dist *.egg-info
1272make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
1273rm -rf __pycache__ Makefile.dependencies
1274make[2]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles'
1275make -C apps clean
1276make[2]: Entering directory '/home/goddard/ucsf/chimerax/src/apps'
1277make -C ChimeraX clean
1278make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
1279/bin/bash: line 1: /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe: No such file or directory
1280rm -f ChimeraX-console.exe launcher.obj main_console.obj icon.obj Info.plist chimerax-icon.icns
1281rm -f ChimeraX.ico icon.rc ChimeraX-console.exe.manifest ChimeraX.pdb vc*.pdb \
1282 ChimeraX-console.exp ChimeraX-console.lib main_desktop.obj
1283make clean DESKTOP=1
1284make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
1285/bin/bash: line 1: /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe: No such file or directory
1286rm -f ChimeraX.exe launcher.obj main_desktop.obj icon.obj Info.plist chimerax-icon.icns
1287rm -f ChimeraX.ico icon.rc ChimeraX.exe.manifest ChimeraX.pdb vc*.pdb \
1288 ChimeraX.exp ChimeraX.lib main_desktop.obj
1289make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
1290make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
1291make -C structcomp clean
1292make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/structcomp'
1293rm -f structcomp.sh
1294make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/structcomp'
1295make[2]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps'
1296make -C examples clean
1297make[2]: Entering directory '/home/goddard/ucsf/chimerax/src/examples'
1298make[2]: Nothing to be done for 'clean'.
1299make[2]: Leaving directory '/home/goddard/ucsf/chimerax/src/examples'
1300make[1]: Leaving directory '/home/goddard/ucsf/chimerax/src'
1301rm -rf ChimeraX.app
1302rm -rf /home/goddard/ucsf/chimerax/build
1303rm -rf build
1304make -C src clean
1305make[1]: Entering directory '/home/goddard/ucsf/chimerax/src'
1306make -C bundles clean
1307make[2]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles'
1308make -C add_charge clean
1309make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
1310rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1311if [ -n "" ]; then \
1312 rm -rf ; \
1313fi
1314make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
1315make -C addh clean
1316make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
1317rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1318if [ -n "" ]; then \
1319 rm -rf ; \
1320fi
1321make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
1322make -C alignment_algs clean
1323make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
1324rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1325if [ -n "src/NeedlemanWunsch/__pycache__" ]; then \
1326 rm -rf src/NeedlemanWunsch/__pycache__; \
1327fi
1328make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
1329make -C alignment_headers clean
1330make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
1331rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1332if [ -n "al2co/al2co.obj al2co/al2co.o src/bin/al2co.exe src/bin/al2co" ]; then \
1333 rm -rf al2co/al2co.obj al2co/al2co.o src/bin/al2co.exe src/bin/al2co; \
1334fi
1335make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
1336make -C alphafold clean
1337make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
1338rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1339if [ -n "" ]; then \
1340 rm -rf ; \
1341fi
1342make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
1343make -C altloc_explorer clean
1344make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
1345rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1346if [ -n "" ]; then \
1347 rm -rf ; \
1348fi
1349make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
1350make -C amber_info clean
1351make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
1352rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1353if [ -n "" ]; then \
1354 rm -rf ; \
1355fi
1356make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
1357make -C aniso clean
1358make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
1359rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1360if [ -n "" ]; then \
1361 rm -rf ; \
1362fi
1363make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
1364make -C arrays clean
1365make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
1366rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1367if [ -n "src/lib src/include _arrays/*.o" ]; then \
1368 rm -rf src/lib src/include _arrays/*.o; \
1369fi
1370make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
1371make -C atom_search clean
1372make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
1373rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__ src/*.pyd
1374if [ -n "search_cpp/ast.cpp" ]; then \
1375 rm -rf search_cpp/ast.cpp; \
1376fi
1377make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
1378make -C atomic clean
1379make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
1380rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1381if [ -n "" ]; then \
1382 rm -rf ; \
1383fi
1384make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
1385make -C atomic_lib clean
1386make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
1387rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1388if [ -n "src/lib src/include src/data atomic_cpp/*/*.obj atomic_cpp/atomstruct_cpp/tmpl/*.obj" ]; then \
1389 rm -rf src/lib src/include src/data atomic_cpp/*/*.obj atomic_cpp/atomstruct_cpp/tmpl/*.obj; \
1390fi
1391make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
1392make -C axes_planes clean
1393make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
1394rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1395if [ -n "" ]; then \
1396 rm -rf ; \
1397fi
1398make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
1399make -C basic_actions clean
1400make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
1401rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1402if [ -n "" ]; then \
1403 rm -rf ; \
1404fi
1405make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
1406make -C bild clean
1407make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
1408rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1409if [ -n "" ]; then \
1410 rm -rf ; \
1411fi
1412make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
1413make -C blastprotein clean
1414make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
1415rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1416if [ -n "" ]; then \
1417 rm -rf ; \
1418fi
1419make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
1420make -C boltz clean
1421make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
1422rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1423if [ -n "" ]; then \
1424 rm -rf ; \
1425fi
1426make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
1427make -C bond_rot clean
1428make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
1429rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1430if [ -n "" ]; then \
1431 rm -rf ; \
1432fi
1433make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
1434make -C bug_reporter clean
1435make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
1436rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1437if [ -n "" ]; then \
1438 rm -rf ; \
1439fi
1440make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
1441make -C build_structure clean
1442make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
1443rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1444if [ -n "" ]; then \
1445 rm -rf ; \
1446fi
1447make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
1448make -C bumps clean
1449make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
1450rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1451if [ -n "" ]; then \
1452 rm -rf ; \
1453fi
1454make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
1455make -C buttons clean
1456make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
1457rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1458if [ -n "" ]; then \
1459 rm -rf ; \
1460fi
1461make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
1462make -C cage_builder clean
1463make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
1464rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1465if [ -n "" ]; then \
1466 rm -rf ; \
1467fi
1468make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
1469make -C cellpack clean
1470make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
1471rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1472if [ -n "" ]; then \
1473 rm -rf ; \
1474fi
1475make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
1476make -C centroids clean
1477make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
1478rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1479if [ -n "" ]; then \
1480 rm -rf ; \
1481fi
1482make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
1483make -C change_chains clean
1484make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
1485rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1486if [ -n "" ]; then \
1487 rm -rf ; \
1488fi
1489make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
1490make -C check_waters clean
1491make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
1492rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1493if [ -n "" ]; then \
1494 rm -rf ; \
1495fi
1496make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
1497make -C chem_group clean
1498make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
1499rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1500if [ -n "bundle_info.xml src/__init__.py src/_chem_group*.pyd" ]; then \
1501 rm -rf bundle_info.xml src/__init__.py src/_chem_group*.pyd; \
1502fi
1503make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
1504make -C clashes clean
1505make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
1506rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1507if [ -n "" ]; then \
1508 rm -rf ; \
1509fi
1510make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
1511make -C cmd_line clean
1512make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
1513rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1514if [ -n "" ]; then \
1515 rm -rf ; \
1516fi
1517make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
1518make -C color_actions clean
1519make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
1520rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1521if [ -n "" ]; then \
1522 rm -rf ; \
1523fi
1524make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
1525make -C color_globe clean
1526make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
1527rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1528if [ -n "" ]; then \
1529 rm -rf ; \
1530fi
1531make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
1532make -C color_key clean
1533make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
1534rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1535if [ -n "" ]; then \
1536 rm -rf ; \
1537fi
1538make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
1539make -C connect_structure clean
1540make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
1541rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1542if [ -n "src/_cs.*" ]; then \
1543 rm -rf src/_cs.*; \
1544fi
1545make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
1546make -C core_formats clean
1547make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
1548rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1549if [ -n "" ]; then \
1550 rm -rf ; \
1551fi
1552make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
1553make -C coulombic clean
1554make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
1555rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1556if [ -n "" ]; then \
1557 rm -rf ; \
1558fi
1559make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
1560make -C crosslinks clean
1561make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
1562rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1563if [ -n "" ]; then \
1564 rm -rf ; \
1565fi
1566make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
1567make -C crystal clean
1568make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
1569rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1570if [ -n "" ]; then \
1571 rm -rf ; \
1572fi
1573make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
1574make -C crystal_contacts clean
1575make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
1576rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1577if [ -n "" ]; then \
1578 rm -rf ; \
1579fi
1580make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
1581make -C data_formats clean
1582make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
1583rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1584if [ -n "" ]; then \
1585 rm -rf ; \
1586fi
1587make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
1588make -C dicom clean
1589make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
1590rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1591if [ -n "" ]; then \
1592 rm -rf ; \
1593fi
1594make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
1595make -C dist_monitor clean
1596make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
1597rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1598if [ -n "" ]; then \
1599 rm -rf ; \
1600fi
1601make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
1602make -C dock_prep clean
1603make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
1604rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1605if [ -n "" ]; then \
1606 rm -rf ; \
1607fi
1608make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
1609make -C dssp clean
1610make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
1611rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1612if [ -n "" ]; then \
1613 rm -rf ; \
1614fi
1615make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
1616make -C emdb_sff clean
1617make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
1618rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1619if [ -n "" ]; then \
1620 rm -rf ; \
1621fi
1622make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
1623make -C esmfold clean
1624make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
1625rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1626if [ -n "" ]; then \
1627 rm -rf ; \
1628fi
1629make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
1630make -C file_history clean
1631make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
1632rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1633if [ -n "" ]; then \
1634 rm -rf ; \
1635fi
1636make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
1637make -C function_key clean
1638make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
1639rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1640if [ -n "" ]; then \
1641 rm -rf ; \
1642fi
1643make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
1644make -C geometry clean
1645make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
1646rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1647if [ -n "src/_geometry*.pyd" ]; then \
1648 rm -rf src/_geometry*.pyd; \
1649fi
1650make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
1651make -C gltf clean
1652make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
1653rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1654if [ -n "" ]; then \
1655 rm -rf ; \
1656fi
1657make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
1658make -C graphics clean
1659make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
1660rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1661if [ -n "" ]; then \
1662 rm -rf ; \
1663fi
1664make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
1665make -C hbonds clean
1666make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
1667rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1668if [ -n "" ]; then \
1669 rm -rf ; \
1670fi
1671make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
1672make -C help_viewer clean
1673make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
1674rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1675if [ -n "" ]; then \
1676 rm -rf ; \
1677fi
1678make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
1679make -C hkcage clean
1680make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
1681rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1682if [ -n "" ]; then \
1683 rm -rf ; \
1684fi
1685make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
1686make -C ihm clean
1687make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
1688rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1689if [ -n "" ]; then \
1690 rm -rf ; \
1691fi
1692make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
1693make -C image_formats clean
1694make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
1695rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1696if [ -n "" ]; then \
1697 rm -rf ; \
1698fi
1699make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
1700make -C imod clean
1701make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
1702rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1703if [ -n "" ]; then \
1704 rm -rf ; \
1705fi
1706make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
1707make -C interfaces clean
1708make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
1709rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1710if [ -n "" ]; then \
1711 rm -rf ; \
1712fi
1713make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
1714make -C items_inspection clean
1715make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
1716rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1717if [ -n "" ]; then \
1718 rm -rf ; \
1719fi
1720make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
1721make -C io clean
1722make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/io'
1723rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1724if [ -n "" ]; then \
1725 rm -rf ; \
1726fi
1727make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/io'
1728make -C label clean
1729make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/label'
1730rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1731if [ -n "" ]; then \
1732 rm -rf ; \
1733fi
1734make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/label'
1735make -C iupac clean
1736make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
1737rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1738if [ -n "" ]; then \
1739 rm -rf ; \
1740fi
1741make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
1742make -C kvfinder clean
1743make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
1744rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1745if [ -n "" ]; then \
1746 rm -rf ; \
1747fi
1748make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
1749make -C list_info clean
1750make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
1751rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1752if [ -n "" ]; then \
1753 rm -rf ; \
1754fi
1755make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
1756make -C log clean
1757make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/log'
1758rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1759if [ -n "" ]; then \
1760 rm -rf ; \
1761fi
1762make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/log'
1763make -C looking_glass clean
1764make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
1765rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1766if [ -n "src/lib" ]; then \
1767 rm -rf src/lib; \
1768fi
1769make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
1770make -C maestro clean
1771make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
1772rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1773if [ -n "" ]; then \
1774 rm -rf ; \
1775fi
1776make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
1777make -C map clean
1778make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map'
1779rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1780if [ -n "" ]; then \
1781 rm -rf ; \
1782fi
1783make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map'
1784make -C map_data clean
1785make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
1786rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1787if [ -n "" ]; then \
1788 rm -rf ; \
1789fi
1790make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
1791make -C map_eraser clean
1792make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
1793rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1794if [ -n "" ]; then \
1795 rm -rf ; \
1796fi
1797make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
1798make -C map_filter clean
1799make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
1800rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1801if [ -n "" ]; then \
1802 rm -rf ; \
1803fi
1804make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
1805make -C map_fit clean
1806make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
1807rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1808if [ -n "" ]; then \
1809 rm -rf ; \
1810fi
1811make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
1812make -C map_series clean
1813make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
1814rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1815if [ -n "" ]; then \
1816 rm -rf ; \
1817fi
1818make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
1819make -C markers clean
1820make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
1821rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1822if [ -n "" ]; then \
1823 rm -rf ; \
1824fi
1825make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
1826make -C mask clean
1827make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
1828rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1829if [ -n "src/_mask*.pyd" ]; then \
1830 rm -rf src/_mask*.pyd; \
1831fi
1832make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
1833make -C match_maker clean
1834make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
1835rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1836if [ -n "" ]; then \
1837 rm -rf ; \
1838fi
1839make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
1840make -C mcopy clean
1841make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
1842rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1843if [ -n "" ]; then \
1844 rm -rf ; \
1845fi
1846make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
1847make -C md_crds clean
1848make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
1849make -C gromacs clean
1850make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
1851rm -rf xdrfile-1.1.4
1852make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
1853rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1854if [ -n "src/dcd/MDToolsMarch97/__pycache__ src/dcd/__pycache src/_gromacs*.pyd" ]; then \
1855 rm -rf src/dcd/MDToolsMarch97/__pycache__ src/dcd/__pycache src/_gromacs*.pyd; \
1856fi
1857make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
1858make -C medical_toolbar clean
1859make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
1860rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1861if [ -n "" ]; then \
1862 rm -rf ; \
1863fi
1864make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
1865make -C meeting clean
1866make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
1867rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1868if [ -n "" ]; then \
1869 rm -rf ; \
1870fi
1871make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
1872make -C minimize clean
1873make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
1874rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1875if [ -n "" ]; then \
1876 rm -rf ; \
1877fi
1878make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
1879make -C mlp clean
1880make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
1881rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1882if [ -n "src/_mlp*.pyd" ]; then \
1883 rm -rf src/_mlp*.pyd; \
1884fi
1885make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
1886make -C model_series clean
1887make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
1888rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1889if [ -n "" ]; then \
1890 rm -rf ; \
1891fi
1892make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
1893make -C mmcif clean
1894make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
1895make -C mmcif_cpp clean
1896make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp'
1897cd readcif_cpp; make clean
1898make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp'
1899make -C cifgrep clean
1900make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp/cifgrep'
1901rm -f cifgrep.exe cifgrep.obj cifgrep.man
1902make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp/cifgrep'
1903rm -f libreadcif.lib readcif.obj
1904rm -f libreadcif.pdb vc*.pdb
1905make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp'
1906rm -rf _mmcif.pyd mmcif.obj template.obj corecif.obj _mmcif.obj include lib
1907rm -f _mmcif.pyd.manifest _mmcif.{lib,exp,ilk,pdb} vc*.pdb
1908make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp'
1909rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1910if [ -n "" ]; then \
1911 rm -rf ; \
1912fi
1913make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
1914make -C mmtf clean
1915make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
1916rm -rf mmtf-cpp-1.1.0 msgpack-c-cpp-4.1.2 build dist *.egg-info src/__pycache__ src/*/__pycache__
1917if [ -n "" ]; then \
1918 rm -rf ; \
1919fi
1920make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
1921make -C model_archive clean
1922make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
1923rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1924if [ -n "" ]; then \
1925 rm -rf ; \
1926fi
1927make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
1928make -C model_panel clean
1929make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
1930rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1931if [ -n "" ]; then \
1932 rm -rf ; \
1933fi
1934make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
1935make -C modeller clean
1936make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
1937rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1938if [ -n "" ]; then \
1939 rm -rf ; \
1940fi
1941make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
1942make -C mol2 clean
1943make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
1944rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1945if [ -n "" ]; then \
1946 rm -rf ; \
1947fi
1948make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
1949make -C mole clean
1950make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
1951rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1952if [ -n "" ]; then \
1953 rm -rf ; \
1954fi
1955make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
1956make -C morph clean
1957make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
1958rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1959if [ -n "src/_morph*.pyd" ]; then \
1960 rm -rf src/_morph*.pyd; \
1961fi
1962make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
1963make -C mouse_modes clean
1964make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
1965rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1966if [ -n "" ]; then \
1967 rm -rf ; \
1968fi
1969make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
1970make -C movie clean
1971make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
1972rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1973if [ -n "" ]; then \
1974 rm -rf ; \
1975fi
1976make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
1977make -C mutation_scores clean
1978make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
1979rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1980if [ -n "" ]; then \
1981 rm -rf ; \
1982fi
1983make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
1984make -C nmrstar clean
1985make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
1986rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1987if [ -n "" ]; then \
1988 rm -rf ; \
1989fi
1990make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
1991make -C neuron clean
1992make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
1993rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
1994if [ -n "src/_stl*.pyd" ]; then \
1995 rm -rf src/_stl*.pyd; \
1996fi
1997make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
1998make -C nifti clean
1999make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
2000rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2001if [ -n "" ]; then \
2002 rm -rf ; \
2003fi
2004make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
2005make -C nrrd clean
2006make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
2007rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2008if [ -n "" ]; then \
2009 rm -rf ; \
2010fi
2011make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
2012make -C nucleotides clean
2013make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
2014rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2015if [ -n "" ]; then \
2016 rm -rf ; \
2017fi
2018make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
2019make -C open_command clean
2020make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
2021rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2022if [ -n "" ]; then \
2023 rm -rf ; \
2024fi
2025make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
2026make -C orthopick clean
2027make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
2028rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2029if [ -n "" ]; then \
2030 rm -rf ; \
2031fi
2032make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
2033make -C pdb clean
2034make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
2035rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2036if [ -n "src/*.pyd pdbio_cpp/PDBio.o* src/*.a" ]; then \
2037 rm -rf src/*.pyd pdbio_cpp/PDBio.o* src/*.a; \
2038fi
2039make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
2040make -C pdb_bio clean
2041make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
2042rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2043if [ -n "" ]; then \
2044 rm -rf ; \
2045fi
2046make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
2047make -C pdb_lib clean
2048make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
2049rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2050if [ -n "src/lib src/include src/*.pyd connect_cpp/connect.o* " ]; then \
2051 rm -rf src/lib src/include src/*.pyd connect_cpp/connect.o* ; \
2052fi
2053make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
2054make -C pdb_matrices clean
2055make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
2056rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2057if [ -n "" ]; then \
2058 rm -rf ; \
2059fi
2060make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
2061make -C pick_blobs clean
2062make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
2063rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2064if [ -n "" ]; then \
2065 rm -rf ; \
2066fi
2067make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
2068make -C positions clean
2069make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
2070rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2071if [ -n "" ]; then \
2072 rm -rf ; \
2073fi
2074make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
2075make -C preset_mgr clean
2076make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
2077rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2078if [ -n "" ]; then \
2079 rm -rf ; \
2080fi
2081make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
2082make -C profile_grids clean
2083make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
2084rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2085if [ -n "" ]; then \
2086 rm -rf ; \
2087fi
2088make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
2089make -C pubchem clean
2090make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
2091rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2092if [ -n "" ]; then \
2093 rm -rf ; \
2094fi
2095make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
2096make -C read_pbonds clean
2097make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
2098rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2099if [ -n "" ]; then \
2100 rm -rf ; \
2101fi
2102make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
2103make -C registration clean
2104make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
2105rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2106if [ -n "" ]; then \
2107 rm -rf ; \
2108fi
2109make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
2110make -C remote_control clean
2111make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
2112rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2113if [ -n "" ]; then \
2114 rm -rf ; \
2115fi
2116make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
2117make -C render_by_attr clean
2118make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
2119rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2120if [ -n "" ]; then \
2121 rm -rf ; \
2122fi
2123make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
2124make -C renumber_residues clean
2125make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
2126rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2127if [ -n "" ]; then \
2128 rm -rf ; \
2129fi
2130make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
2131make -C rest_server clean
2132make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
2133rm -rf src/server.pem
2134rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2135if [ -n "" ]; then \
2136 rm -rf ; \
2137fi
2138make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
2139make -C residue_fit clean
2140make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
2141rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2142if [ -n "" ]; then \
2143 rm -rf ; \
2144fi
2145make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
2146make -C rna_layout clean
2147make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
2148rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2149if [ -n "" ]; then \
2150 rm -rf ; \
2151fi
2152make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
2153make -C rotamers clean
2154make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
2155rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2156if [ -n "" ]; then \
2157 rm -rf ; \
2158fi
2159make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
2160make -C rotamer_libs clean
2161make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs'
2162make -C Dunbrack clean
2163make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
2164rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2165if [ -n "" ]; then \
2166 rm -rf ; \
2167fi
2168make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
2169make -C Dynameomics clean
2170make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
2171rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2172if [ -n "" ]; then \
2173 rm -rf ; \
2174fi
2175make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
2176make -C Richardson clean
2177make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
2178rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2179if [ -n "" ]; then \
2180 rm -rf ; \
2181fi
2182make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
2183make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs'
2184make -C save_command clean
2185make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
2186rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2187if [ -n "" ]; then \
2188 rm -rf ; \
2189fi
2190make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
2191make -C scenes clean
2192make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
2193rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2194if [ -n "" ]; then \
2195 rm -rf ; \
2196fi
2197make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
2198make -C scheme_mgr clean
2199make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
2200rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2201if [ -n "" ]; then \
2202 rm -rf ; \
2203fi
2204make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
2205make -C sdf clean
2206make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
2207rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2208if [ -n "" ]; then \
2209 rm -rf ; \
2210fi
2211make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
2212make -C sel_inspector clean
2213make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
2214rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2215if [ -n "" ]; then \
2216 rm -rf ; \
2217fi
2218make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
2219make -C segger clean
2220make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segger'
2221rm -rf seggerx
2222make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segger'
2223make -C segment clean
2224make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
2225rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2226if [ -n "src/_segment*.pyd" ]; then \
2227 rm -rf src/_segment*.pyd; \
2228fi
2229make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
2230make -C segmentations clean
2231make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
2232rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2233if [ -n "" ]; then \
2234 rm -rf ; \
2235fi
2236make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
2237make -C seqalign clean
2238make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
2239rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2240if [ -n "src/io/__pycache__" ]; then \
2241 rm -rf src/io/__pycache__; \
2242fi
2243make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
2244make -C seq_view clean
2245make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
2246rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2247if [ -n "" ]; then \
2248 rm -rf ; \
2249fi
2250make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
2251make -C shape clean
2252make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
2253rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2254if [ -n "" ]; then \
2255 rm -rf ; \
2256fi
2257make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
2258make -C shell clean
2259make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
2260rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2261if [ -n "" ]; then \
2262 rm -rf ; \
2263fi
2264make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
2265make -C shortcuts clean
2266make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
2267rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2268if [ -n "" ]; then \
2269 rm -rf ; \
2270fi
2271make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
2272make -C show_sequences clean
2273make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
2274rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2275if [ -n "" ]; then \
2276 rm -rf ; \
2277fi
2278make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
2279make -C sideview clean
2280make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
2281rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2282if [ -n "" ]; then \
2283 rm -rf ; \
2284fi
2285make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
2286make -C sim_matrices clean
2287make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
2288rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2289if [ -n "" ]; then \
2290 rm -rf ; \
2291fi
2292make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
2293make -C similarstructures clean
2294make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
2295rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2296if [ -n "" ]; then \
2297 rm -rf ; \
2298fi
2299make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
2300make -C smiles clean
2301make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
2302rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2303if [ -n "" ]; then \
2304 rm -rf ; \
2305fi
2306make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
2307make -C smooth_lines clean
2308make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
2309rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2310if [ -n "" ]; then \
2311 rm -rf ; \
2312fi
2313make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
2314make -C spacenavigator clean
2315make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
2316rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2317if [ -n "" ]; then \
2318 rm -rf ; \
2319fi
2320make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
2321make -C std_commands clean
2322make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
2323rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2324if [ -n "" ]; then \
2325 rm -rf ; \
2326fi
2327make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
2328make -C stl clean
2329make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
2330rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2331if [ -n "src/_stl*.pyd" ]; then \
2332 rm -rf src/_stl*.pyd; \
2333fi
2334make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
2335make -C storm clean
2336make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
2337rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2338if [ -n "" ]; then \
2339 rm -rf ; \
2340fi
2341make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
2342make -C struct_measure clean
2343make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
2344rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2345if [ -n "" ]; then \
2346 rm -rf ; \
2347fi
2348make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
2349make -C struts clean
2350make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
2351rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2352if [ -n "" ]; then \
2353 rm -rf ; \
2354fi
2355make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
2356make -C surface clean
2357make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
2358rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2359if [ -n "" ]; then \
2360 rm -rf ; \
2361fi
2362make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
2363make -C swapaa clean
2364make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
2365rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2366if [ -n "" ]; then \
2367 rm -rf ; \
2368fi
2369make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
2370make -C swap_res clean
2371make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
2372rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2373if [ -n "" ]; then \
2374 rm -rf ; \
2375fi
2376make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
2377make -C tape_measure clean
2378make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
2379rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2380if [ -n "" ]; then \
2381 rm -rf ; \
2382fi
2383make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
2384make -C task_manager clean
2385make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
2386rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2387if [ -n "" ]; then \
2388 rm -rf ; \
2389fi
2390make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
2391make -C test clean
2392make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/test'
2393rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2394if [ -n "exectest/exectest.o exectest/exectest.obj src/bin/exectest*" ]; then \
2395 rm -rf exectest/exectest.o exectest/exectest.obj src/bin/exectest*; \
2396fi
2397make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/test'
2398make -C toolbar clean
2399make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
2400rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2401if [ -n "" ]; then \
2402 rm -rf ; \
2403fi
2404make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
2405make -C topography clean
2406make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
2407rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2408if [ -n "" ]; then \
2409 rm -rf ; \
2410fi
2411make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
2412make -C to_quest clean
2413make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
2414rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2415if [ -n "" ]; then \
2416 rm -rf ; \
2417fi
2418make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
2419make -C tug clean
2420make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
2421rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2422if [ -n "" ]; then \
2423 rm -rf ; \
2424fi
2425make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
2426make -C ui clean
2427make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
2428rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2429if [ -n "src/about.html src/*/__pycache__" ]; then \
2430 rm -rf src/about.html src/*/__pycache__; \
2431fi
2432make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
2433make -C umap clean
2434make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
2435rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2436if [ -n "" ]; then \
2437 rm -rf ; \
2438fi
2439make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
2440make -C uniprot clean
2441make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
2442rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2443if [ -n "" ]; then \
2444 rm -rf ; \
2445fi
2446make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
2447make -C unit_cell clean
2448make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
2449rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2450if [ -n "" ]; then \
2451 rm -rf ; \
2452fi
2453make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
2454make -C viewdock clean
2455make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
2456rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2457if [ -n "" ]; then \
2458 rm -rf ; \
2459fi
2460make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
2461make -C viperdb clean
2462make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
2463rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2464if [ -n "" ]; then \
2465 rm -rf ; \
2466fi
2467make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
2468make -C vive clean
2469make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
2470rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2471if [ -n "" ]; then \
2472 rm -rf ; \
2473fi
2474make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
2475make -C volume_menu clean
2476make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
2477rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2478if [ -n "" ]; then \
2479 rm -rf ; \
2480fi
2481make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
2482make -C vrml clean
2483make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
2484rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2485if [ -n "" ]; then \
2486 rm -rf ; \
2487fi
2488make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
2489make -C vtk clean
2490make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
2491rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2492if [ -n "" ]; then \
2493 rm -rf ; \
2494fi
2495make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
2496make -C wavefront_obj clean
2497make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
2498rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2499if [ -n "" ]; then \
2500 rm -rf ; \
2501fi
2502make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
2503make -C webcam clean
2504make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
2505rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2506if [ -n "src/_webcam*.pyd" ]; then \
2507 rm -rf src/_webcam*.pyd; \
2508fi
2509make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
2510make -C webservices clean
2511make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
2512rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2513if [ -n "" ]; then \
2514 rm -rf ; \
2515fi
2516make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
2517make -C zone clean
2518make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
2519rm -rf build dist *.egg-info src/__pycache__ src/*/__pycache__
2520if [ -n "" ]; then \
2521 rm -rf ; \
2522fi
2523make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
2524make -C core clean
2525make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core'
2526/bin/bash: line 1: /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe: No such file or directory
2527rm -rf __pycache__ src/__pycache__ build dist *.egg-info src/_serialize.cpp \
2528 src/buildinfo.py src/commands/_atomspec.py src/toolshed/__pycache__ \
2529 src/lib/* core_cpp/*/*.a core_cpp/*/*.o src/include src/*.so \
2530 chutil_cpp logger_cpp ioutil_cpp mac_util_cpp toolshed commands \
2531 _serialize.cpp buildinfo.py setup.py
2532make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core'
2533make -C bundle_builder clean
2534make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
2535rm -rf src/__pycache__ build dist *.egg-info
2536make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
2537make -C toolshed_utils clean
2538make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
2539rm -rf src/__pycache__ build dist *.egg-info
2540make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
2541rm -rf __pycache__ Makefile.dependencies
2542make[2]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles'
2543make -C apps clean
2544make[2]: Entering directory '/home/goddard/ucsf/chimerax/src/apps'
2545make -C ChimeraX clean
2546make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
2547/bin/bash: line 1: /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe: No such file or directory
2548rm -f ChimeraX-console.exe launcher.obj main_console.obj icon.obj Info.plist chimerax-icon.icns
2549rm -f ChimeraX.ico icon.rc ChimeraX-console.exe.manifest ChimeraX.pdb vc*.pdb \
2550 ChimeraX-console.exp ChimeraX-console.lib main_desktop.obj
2551make clean DESKTOP=1
2552make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
2553/bin/bash: line 1: /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe: No such file or directory
2554rm -f ChimeraX.exe launcher.obj main_desktop.obj icon.obj Info.plist chimerax-icon.icns
2555rm -f ChimeraX.ico icon.rc ChimeraX.exe.manifest ChimeraX.pdb vc*.pdb \
2556 ChimeraX.exp ChimeraX.lib main_desktop.obj
2557make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
2558make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
2559make -C structcomp clean
2560make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/structcomp'
2561rm -f structcomp.sh
2562make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/structcomp'
2563make[2]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps'
2564make -C examples clean
2565make[2]: Entering directory '/home/goddard/ucsf/chimerax/src/examples'
2566make[2]: Nothing to be done for 'clean'.
2567make[2]: Leaving directory '/home/goddard/ucsf/chimerax/src/examples'
2568make[1]: Leaving directory '/home/goddard/ucsf/chimerax/src'
2569make -C docs clean
2570make[1]: Entering directory '/home/goddard/ucsf/chimerax/docs'
2571make -C devel clean
2572make[2]: Entering directory '/home/goddard/ucsf/chimerax/docs/devel'
2573rm -rf _build/* conf.py index.rst _static/cxlinks.js __pycache__ _static/devdocs.css \
2574 apps chimerax modules
2575make[2]: Leaving directory '/home/goddard/ucsf/chimerax/docs/devel'
2576make -C pdbimages clean
2577make[2]: Entering directory '/home/goddard/ucsf/chimerax/docs/pdbimages'
2578make[2]: Nothing to be done for 'clean'.
2579make[2]: Leaving directory '/home/goddard/ucsf/chimerax/docs/pdbimages'
2580make -C quickstart clean
2581make[2]: Entering directory '/home/goddard/ucsf/chimerax/docs/quickstart'
2582make[2]: Nothing to be done for 'clean'.
2583make[2]: Leaving directory '/home/goddard/ucsf/chimerax/docs/quickstart'
2584make -C user clean
2585make[2]: Entering directory '/home/goddard/ucsf/chimerax/docs/user'
2586make -C tools clean
2587make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/user/tools'
2588make[3]: Nothing to be done for 'clean'.
2589make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user/tools'
2590make -C dicom clean
2591make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/user/dicom'
2592make[3]: Nothing to be done for 'clean'.
2593make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user/dicom'
2594make -C tutorials clean
2595make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/user/tutorials'
2596make[3]: Nothing to be done for 'clean'.
2597make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user/tutorials'
2598make[2]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user'
2599make -C js clean
2600make[2]: Entering directory '/home/goddard/ucsf/chimerax/docs/js'
2601make[2]: Nothing to be done for 'clean'.
2602make[2]: Leaving directory '/home/goddard/ucsf/chimerax/docs/js'
2603rm -f license.html license.txt embedded.html
2604rm -rf licenses
2605make[1]: Leaving directory '/home/goddard/ucsf/chimerax/docs'
2606make -C vdocs clean
2607make[1]: Entering directory '/home/goddard/ucsf/chimerax/vdocs'
2608rm -rf user
2609make[1]: Leaving directory '/home/goddard/ucsf/chimerax/vdocs'
2610rm -rf prereqs/prebuilt-*.tar.bz2
2611make install
2612make[1]: Entering directory '/home/goddard/ucsf/chimerax'
2613Started install at Tue Sep 23 11:48:09 PDT 2025 on vizvault
2614make build-dirs
2615make[2]: Entering directory '/home/goddard/ucsf/chimerax'
2616mkdir -p /home/goddard/ucsf/chimerax/build /home/goddard/ucsf/chimerax/build/bin /home/goddard/ucsf/chimerax/build/lib /home/goddard/ucsf/chimerax/build/include /home/goddard/ucsf/chimerax/build/bin/share \
2617 /home/goddard/ucsf/chimerax/build/sync/ /home/goddard/ucsf/chimerax/build/tmp
2618mkdir /home/goddard/ucsf/chimerax/build/bin
2619mkdir: cannot create directory '/home/goddard/ucsf/chimerax/build/bin': File exists
2620make[2]: [Makefile:195: build-dirs] Error 1 (ignored)
2621make[2]: Leaving directory '/home/goddard/ucsf/chimerax'
2622make -C prereqs install-prebuilt
2623make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs'
2624Started prereq install at Tue Sep 23 11:48:10 PDT 2025 on vizvault
2625if [ -e prebuilt-Windows64.tar.bz2 ]; then \
2626 make build-dirs ; \
2627 prebuilt=`pwd`/prebuilt-Windows64.tar.bz2 && cd /home/goddard/ucsf/chimerax/build && tar xjf $prebuilt ; \
2628else \
2629 make install && make prebuilt; \
2630fi
2631make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs'
2632make -C /home/goddard/ucsf/chimerax build-dirs
2633make[4]: Entering directory '/home/goddard/ucsf/chimerax'
2634mkdir -p /home/goddard/ucsf/chimerax/build /home/goddard/ucsf/chimerax/build/bin /home/goddard/ucsf/chimerax/build/lib /home/goddard/ucsf/chimerax/build/include /home/goddard/ucsf/chimerax/build/bin/share \
2635 /home/goddard/ucsf/chimerax/build/sync/ /home/goddard/ucsf/chimerax/build/tmp
2636mkdir /home/goddard/ucsf/chimerax/build/bin
2637mkdir: cannot create directory '/home/goddard/ucsf/chimerax/build/bin': File exists
2638make[4]: [Makefile:195: build-dirs] Error 1 (ignored)
2639make[4]: Leaving directory '/home/goddard/ucsf/chimerax'
2640make -C win32 install
2641make[4]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/win32'
2642if [ -d '/cygdrive/c/Program Files (x86)/Microsoft Visual Studio/2019/Community/VC/Redist/MSVC/14.24.28127'/x64/Microsoft.VC142.CRT ]; then /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv '/cygdrive/c/Program Files (x86)/Microsoft Visual Studio/2019/Community/VC/Redist/MSVC/14.24.28127'/x64/Microsoft.VC142.CRT/*.dll /home/goddard/ucsf/chimerax/build/bin; fi
2643make[4]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/win32'
2644make -C ffmpeg install
2645make[4]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/ffmpeg'
2646curl --silent --show-error --fail --insecure -O https://cxtoolshed.rbvi.ucsf.edu/prereqs/ffmpeg/ffmpeg-3.2.4-Windows.exe
2647chmod a+x ffmpeg-3.2.4-Windows.exe
2648/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ffmpeg-3.2.4-Windows.exe /home/goddard/ucsf/chimerax/build/bin/ffmpeg.exe
2649sending incremental file list
2650ffmpeg-3.2.4-Windows.exe
2651
2652sent 40,349,922 bytes received 35 bytes 80,699,914.00 bytes/sec
2653total size is 40,339,968 speedup is 1.00
2654make[4]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/ffmpeg'
2655make -C ambertools install
2656make[4]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/ambertools'
2657make[4]: Nothing to be done for 'install'.
2658make[4]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/ambertools'
2659make -C Python install
2660make[4]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/Python'
2661curl --silent --show-error --fail --insecure -O https://cxtoolshed.rbvi.ucsf.edu/prereqs/python/python-3.11.9-win-amd64.tar.bz2
2662tar xf python-3.11.9-win-amd64.tar.bz2 -C /home/goddard/ucsf/chimerax/build/tmp --no-same-owner
2663/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv --exclude='site-packages/*' --exclude='test/*' --exclude=__pycache__ --delete\
2664 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/DLLs \
2665 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/Lib \
2666 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/include \
2667 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/libs \
2668 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/python.exe \
2669 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/pythonw.exe \
2670 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/*.dll \
2671 '/home/goddard/ucsf/chimerax/build/bin'
2672sending incremental file list
2673python.exe
2674python3.dll
2675python311.dll
2676pythonw.exe
2677vcruntime140.dll
2678vcruntime140_1.dll
2679DLLs/
2680DLLs/_asyncio.pyd
2681DLLs/_bz2.pyd
2682DLLs/_ctypes.pyd
2683DLLs/_ctypes_test.pyd
2684DLLs/_decimal.pyd
2685DLLs/_elementtree.pyd
2686DLLs/_hashlib.pyd
2687DLLs/_lzma.pyd
2688DLLs/_msi.pyd
2689DLLs/_multiprocessing.pyd
2690DLLs/_overlapped.pyd
2691DLLs/_queue.pyd
2692DLLs/_socket.pyd
2693DLLs/_sqlite3.pyd
2694DLLs/_ssl.pyd
2695DLLs/_testbuffer.pyd
2696DLLs/_testcapi.pyd
2697DLLs/_testconsole.pyd
2698DLLs/_testimportmultiple.pyd
2699DLLs/_testinternalcapi.pyd
2700DLLs/_testmultiphase.pyd
2701DLLs/_tkinter.pyd
2702DLLs/_uuid.pyd
2703DLLs/_zoneinfo.pyd
2704DLLs/libcrypto-3.dll
2705DLLs/libffi-8.dll
2706DLLs/libssl-3.dll
2707DLLs/py.ico
2708DLLs/pyc.ico
2709DLLs/pyd.ico
2710DLLs/pyexpat.pyd
2711DLLs/python_lib.cat
2712DLLs/python_tools.cat
2713DLLs/select.pyd
2714DLLs/sqlite3.dll
2715DLLs/tcl86t.dll
2716DLLs/tk86t.dll
2717DLLs/unicodedata.pyd
2718DLLs/winsound.pyd
2719Lib/
2720Lib/__future__.py
2721Lib/__hello__.py
2722Lib/_aix_support.py
2723Lib/_bootsubprocess.py
2724Lib/_collections_abc.py
2725Lib/_compat_pickle.py
2726Lib/_compression.py
2727Lib/_markupbase.py
2728Lib/_osx_support.py
2729Lib/_py_abc.py
2730Lib/_pydecimal.py
2731Lib/_pyio.py
2732Lib/_sitebuiltins.py
2733Lib/_strptime.py
2734Lib/_threading_local.py
2735Lib/_weakrefset.py
2736Lib/abc.py
2737Lib/aifc.py
2738Lib/antigravity.py
2739Lib/argparse.py
2740Lib/ast.py
2741Lib/asynchat.py
2742Lib/asyncore.py
2743Lib/base64.py
2744Lib/bdb.py
2745Lib/bisect.py
2746Lib/bz2.py
2747Lib/cProfile.py
2748Lib/calendar.py
2749Lib/cgi.py
2750Lib/cgitb.py
2751Lib/chunk.py
2752Lib/cmd.py
2753Lib/code.py
2754Lib/codecs.py
2755Lib/codeop.py
2756Lib/colorsys.py
2757Lib/compileall.py
2758Lib/configparser.py
2759Lib/contextlib.py
2760Lib/contextvars.py
2761Lib/copy.py
2762Lib/copyreg.py
2763Lib/crypt.py
2764Lib/csv.py
2765Lib/dataclasses.py
2766Lib/datetime.py
2767Lib/decimal.py
2768Lib/difflib.py
2769Lib/dis.py
2770Lib/doctest.py
2771Lib/enum.py
2772Lib/filecmp.py
2773Lib/fileinput.py
2774Lib/fnmatch.py
2775Lib/fractions.py
2776Lib/ftplib.py
2777Lib/functools.py
2778Lib/genericpath.py
2779Lib/getopt.py
2780Lib/getpass.py
2781Lib/gettext.py
2782Lib/glob.py
2783Lib/graphlib.py
2784Lib/gzip.py
2785Lib/hashlib.py
2786Lib/heapq.py
2787Lib/hmac.py
2788Lib/imaplib.py
2789Lib/imghdr.py
2790Lib/imp.py
2791Lib/inspect.py
2792Lib/io.py
2793Lib/ipaddress.py
2794Lib/keyword.py
2795Lib/linecache.py
2796Lib/locale.py
2797Lib/lzma.py
2798Lib/mailbox.py
2799Lib/mailcap.py
2800Lib/mimetypes.py
2801Lib/modulefinder.py
2802Lib/netrc.py
2803Lib/nntplib.py
2804Lib/ntpath.py
2805Lib/nturl2path.py
2806Lib/numbers.py
2807Lib/opcode.py
2808Lib/operator.py
2809Lib/optparse.py
2810Lib/os.py
2811Lib/pathlib.py
2812Lib/pdb.py
2813Lib/pickle.py
2814Lib/pickletools.py
2815Lib/pipes.py
2816Lib/pkgutil.py
2817Lib/platform.py
2818Lib/plistlib.py
2819Lib/poplib.py
2820Lib/posixpath.py
2821Lib/pprint.py
2822Lib/profile.py
2823Lib/pstats.py
2824Lib/pty.py
2825Lib/py_compile.py
2826Lib/pyclbr.py
2827Lib/pydoc.py
2828Lib/queue.py
2829Lib/quopri.py
2830Lib/random.py
2831Lib/reprlib.py
2832Lib/rlcompleter.py
2833Lib/runpy.py
2834Lib/sched.py
2835Lib/secrets.py
2836Lib/selectors.py
2837Lib/shelve.py
2838Lib/shlex.py
2839Lib/shutil.py
2840Lib/signal.py
2841Lib/site.py
2842Lib/smtpd.py
2843Lib/smtplib.py
2844Lib/sndhdr.py
2845Lib/socket.py
2846Lib/socketserver.py
2847Lib/sre_compile.py
2848Lib/sre_constants.py
2849Lib/sre_parse.py
2850Lib/ssl.py
2851Lib/stat.py
2852Lib/statistics.py
2853Lib/string.py
2854Lib/stringprep.py
2855Lib/struct.py
2856Lib/subprocess.py
2857Lib/sunau.py
2858Lib/symtable.py
2859Lib/sysconfig.py
2860Lib/tabnanny.py
2861Lib/tarfile.py
2862Lib/telnetlib.py
2863Lib/tempfile.py
2864Lib/textwrap.py
2865Lib/this.py
2866Lib/threading.py
2867Lib/timeit.py
2868Lib/token.py
2869Lib/tokenize.py
2870Lib/trace.py
2871Lib/traceback.py
2872Lib/tracemalloc.py
2873Lib/tty.py
2874Lib/turtle.py
2875Lib/types.py
2876Lib/typing.py
2877Lib/uu.py
2878Lib/uuid.py
2879Lib/warnings.py
2880Lib/wave.py
2881Lib/weakref.py
2882Lib/webbrowser.py
2883Lib/xdrlib.py
2884Lib/zipapp.py
2885Lib/zipfile.py
2886Lib/zipimport.py
2887Lib/__phello__/
2888Lib/__phello__/__init__.py
2889Lib/__phello__/spam.py
2890Lib/__phello__/ham/
2891Lib/__phello__/ham/__init__.py
2892Lib/__phello__/ham/eggs.py
2893Lib/asyncio/
2894Lib/asyncio/__init__.py
2895Lib/asyncio/__main__.py
2896Lib/asyncio/base_events.py
2897Lib/asyncio/base_futures.py
2898Lib/asyncio/base_subprocess.py
2899Lib/asyncio/base_tasks.py
2900Lib/asyncio/constants.py
2901Lib/asyncio/coroutines.py
2902Lib/asyncio/events.py
2903Lib/asyncio/exceptions.py
2904Lib/asyncio/format_helpers.py
2905Lib/asyncio/futures.py
2906Lib/asyncio/locks.py
2907Lib/asyncio/log.py
2908Lib/asyncio/mixins.py
2909Lib/asyncio/proactor_events.py
2910Lib/asyncio/protocols.py
2911Lib/asyncio/queues.py
2912Lib/asyncio/runners.py
2913Lib/asyncio/selector_events.py
2914Lib/asyncio/sslproto.py
2915Lib/asyncio/staggered.py
2916Lib/asyncio/streams.py
2917Lib/asyncio/subprocess.py
2918Lib/asyncio/taskgroups.py
2919Lib/asyncio/tasks.py
2920Lib/asyncio/threads.py
2921Lib/asyncio/timeouts.py
2922Lib/asyncio/transports.py
2923Lib/asyncio/trsock.py
2924Lib/asyncio/unix_events.py
2925Lib/asyncio/windows_events.py
2926Lib/asyncio/windows_utils.py
2927Lib/collections/
2928Lib/collections/__init__.py
2929Lib/collections/abc.py
2930Lib/concurrent/
2931Lib/concurrent/__init__.py
2932Lib/concurrent/futures/
2933Lib/concurrent/futures/__init__.py
2934Lib/concurrent/futures/_base.py
2935Lib/concurrent/futures/process.py
2936Lib/concurrent/futures/thread.py
2937Lib/ctypes/
2938Lib/ctypes/__init__.py
2939Lib/ctypes/_aix.py
2940Lib/ctypes/_endian.py
2941Lib/ctypes/util.py
2942Lib/ctypes/wintypes.py
2943Lib/ctypes/macholib/
2944Lib/ctypes/macholib/README.ctypes
2945Lib/ctypes/macholib/__init__.py
2946Lib/ctypes/macholib/dyld.py
2947Lib/ctypes/macholib/dylib.py
2948Lib/ctypes/macholib/fetch_macholib
2949Lib/ctypes/macholib/fetch_macholib.bat
2950Lib/ctypes/macholib/framework.py
2951Lib/ctypes/test/
2952Lib/curses/
2953Lib/curses/__init__.py
2954Lib/curses/ascii.py
2955Lib/curses/has_key.py
2956Lib/curses/panel.py
2957Lib/curses/textpad.py
2958Lib/dbm/
2959Lib/dbm/__init__.py
2960Lib/dbm/dumb.py
2961Lib/dbm/gnu.py
2962Lib/dbm/ndbm.py
2963Lib/distutils/
2964Lib/distutils/README
2965Lib/distutils/__init__.py
2966Lib/distutils/_msvccompiler.py
2967Lib/distutils/archive_util.py
2968Lib/distutils/bcppcompiler.py
2969Lib/distutils/ccompiler.py
2970Lib/distutils/cmd.py
2971Lib/distutils/config.py
2972Lib/distutils/core.py
2973Lib/distutils/cygwinccompiler.py
2974Lib/distutils/debug.py
2975Lib/distutils/dep_util.py
2976Lib/distutils/dir_util.py
2977Lib/distutils/dist.py
2978Lib/distutils/errors.py
2979Lib/distutils/extension.py
2980Lib/distutils/fancy_getopt.py
2981Lib/distutils/file_util.py
2982Lib/distutils/filelist.py
2983Lib/distutils/log.py
2984Lib/distutils/msvc9compiler.py
2985Lib/distutils/msvccompiler.py
2986Lib/distutils/spawn.py
2987Lib/distutils/sysconfig.py
2988Lib/distutils/text_file.py
2989Lib/distutils/unixccompiler.py
2990Lib/distutils/util.py
2991Lib/distutils/version.py
2992Lib/distutils/versionpredicate.py
2993Lib/distutils/command/
2994Lib/distutils/command/__init__.py
2995Lib/distutils/command/bdist.py
2996Lib/distutils/command/bdist_dumb.py
2997Lib/distutils/command/bdist_rpm.py
2998Lib/distutils/command/build.py
2999Lib/distutils/command/build_clib.py
3000Lib/distutils/command/build_ext.py
3001Lib/distutils/command/build_py.py
3002Lib/distutils/command/build_scripts.py
3003Lib/distutils/command/check.py
3004Lib/distutils/command/clean.py
3005Lib/distutils/command/command_template
3006Lib/distutils/command/config.py
3007Lib/distutils/command/install.py
3008Lib/distutils/command/install_data.py
3009Lib/distutils/command/install_egg_info.py
3010Lib/distutils/command/install_headers.py
3011Lib/distutils/command/install_lib.py
3012Lib/distutils/command/install_scripts.py
3013Lib/distutils/command/register.py
3014Lib/distutils/command/sdist.py
3015Lib/distutils/command/upload.py
3016Lib/distutils/tests/
3017Lib/distutils/tests/Setup.sample
3018Lib/distutils/tests/__init__.py
3019Lib/distutils/tests/includetest.rst
3020Lib/distutils/tests/support.py
3021Lib/distutils/tests/test_archive_util.py
3022Lib/distutils/tests/test_bdist.py
3023Lib/distutils/tests/test_bdist_dumb.py
3024Lib/distutils/tests/test_bdist_rpm.py
3025Lib/distutils/tests/test_build.py
3026Lib/distutils/tests/test_build_clib.py
3027Lib/distutils/tests/test_build_ext.py
3028Lib/distutils/tests/test_build_py.py
3029Lib/distutils/tests/test_build_scripts.py
3030Lib/distutils/tests/test_check.py
3031Lib/distutils/tests/test_clean.py
3032Lib/distutils/tests/test_cmd.py
3033Lib/distutils/tests/test_config.py
3034Lib/distutils/tests/test_config_cmd.py
3035Lib/distutils/tests/test_core.py
3036Lib/distutils/tests/test_cygwinccompiler.py
3037Lib/distutils/tests/test_dep_util.py
3038Lib/distutils/tests/test_dir_util.py
3039Lib/distutils/tests/test_dist.py
3040Lib/distutils/tests/test_extension.py
3041Lib/distutils/tests/test_file_util.py
3042Lib/distutils/tests/test_filelist.py
3043Lib/distutils/tests/test_install.py
3044Lib/distutils/tests/test_install_data.py
3045Lib/distutils/tests/test_install_headers.py
3046Lib/distutils/tests/test_install_lib.py
3047Lib/distutils/tests/test_install_scripts.py
3048Lib/distutils/tests/test_log.py
3049Lib/distutils/tests/test_msvc9compiler.py
3050Lib/distutils/tests/test_msvccompiler.py
3051Lib/distutils/tests/test_register.py
3052Lib/distutils/tests/test_sdist.py
3053Lib/distutils/tests/test_spawn.py
3054Lib/distutils/tests/test_sysconfig.py
3055Lib/distutils/tests/test_text_file.py
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3554Lib/multiprocessing/popen_fork.py
3555Lib/multiprocessing/popen_forkserver.py
3556Lib/multiprocessing/popen_spawn_posix.py
3557Lib/multiprocessing/popen_spawn_win32.py
3558Lib/multiprocessing/process.py
3559Lib/multiprocessing/queues.py
3560Lib/multiprocessing/reduction.py
3561Lib/multiprocessing/resource_sharer.py
3562Lib/multiprocessing/resource_tracker.py
3563Lib/multiprocessing/shared_memory.py
3564Lib/multiprocessing/sharedctypes.py
3565Lib/multiprocessing/spawn.py
3566Lib/multiprocessing/synchronize.py
3567Lib/multiprocessing/util.py
3568Lib/multiprocessing/dummy/
3569Lib/multiprocessing/dummy/__init__.py
3570Lib/multiprocessing/dummy/connection.py
3571Lib/pydoc_data/
3572Lib/pydoc_data/__init__.py
3573Lib/pydoc_data/_pydoc.css
3574Lib/pydoc_data/topics.py
3575Lib/re/
3576Lib/re/__init__.py
3577Lib/re/_casefix.py
3578Lib/re/_compiler.py
3579Lib/re/_constants.py
3580Lib/re/_parser.py
3581Lib/site-packages/
3582Lib/sqlite3/
3583Lib/sqlite3/__init__.py
3584Lib/sqlite3/dbapi2.py
3585Lib/sqlite3/dump.py
3586Lib/test/
3587Lib/tkinter/
3588Lib/tkinter/__init__.py
3589Lib/tkinter/__main__.py
3590Lib/tkinter/colorchooser.py
3591Lib/tkinter/commondialog.py
3592Lib/tkinter/constants.py
3593Lib/tkinter/dialog.py
3594Lib/tkinter/dnd.py
3595Lib/tkinter/filedialog.py
3596Lib/tkinter/font.py
3597Lib/tkinter/messagebox.py
3598Lib/tkinter/scrolledtext.py
3599Lib/tkinter/simpledialog.py
3600Lib/tkinter/tix.py
3601Lib/tkinter/ttk.py
3602Lib/tkinter/test/
3603Lib/tomllib/
3604Lib/tomllib/__init__.py
3605Lib/tomllib/_parser.py
3606Lib/tomllib/_re.py
3607Lib/tomllib/_types.py
3608Lib/turtledemo/
3609Lib/turtledemo/__init__.py
3610Lib/turtledemo/__main__.py
3611Lib/turtledemo/bytedesign.py
3612Lib/turtledemo/chaos.py
3613Lib/turtledemo/clock.py
3614Lib/turtledemo/colormixer.py
3615Lib/turtledemo/forest.py
3616Lib/turtledemo/fractalcurves.py
3617Lib/turtledemo/lindenmayer.py
3618Lib/turtledemo/minimal_hanoi.py
3619Lib/turtledemo/nim.py
3620Lib/turtledemo/paint.py
3621Lib/turtledemo/peace.py
3622Lib/turtledemo/penrose.py
3623Lib/turtledemo/planet_and_moon.py
3624Lib/turtledemo/rosette.py
3625Lib/turtledemo/round_dance.py
3626Lib/turtledemo/sorting_animate.py
3627Lib/turtledemo/tree.py
3628Lib/turtledemo/turtle.cfg
3629Lib/turtledemo/two_canvases.py
3630Lib/turtledemo/yinyang.py
3631Lib/unittest/
3632Lib/unittest/__init__.py
3633Lib/unittest/__main__.py
3634Lib/unittest/_log.py
3635Lib/unittest/async_case.py
3636Lib/unittest/case.py
3637Lib/unittest/loader.py
3638Lib/unittest/main.py
3639Lib/unittest/mock.py
3640Lib/unittest/result.py
3641Lib/unittest/runner.py
3642Lib/unittest/signals.py
3643Lib/unittest/suite.py
3644Lib/unittest/util.py
3645Lib/unittest/test/
3646Lib/urllib/
3647Lib/urllib/__init__.py
3648Lib/urllib/error.py
3649Lib/urllib/parse.py
3650Lib/urllib/request.py
3651Lib/urllib/response.py
3652Lib/urllib/robotparser.py
3653Lib/venv/
3654Lib/venv/__init__.py
3655Lib/venv/__main__.py
3656Lib/venv/scripts/
3657Lib/venv/scripts/common/
3658Lib/venv/scripts/common/Activate.ps1
3659Lib/venv/scripts/common/activate
3660Lib/venv/scripts/nt/
3661Lib/venv/scripts/nt/activate.bat
3662Lib/venv/scripts/nt/deactivate.bat
3663Lib/venv/scripts/nt/python.exe
3664Lib/venv/scripts/nt/pythonw.exe
3665Lib/venv/scripts/posix/
3666Lib/venv/scripts/posix/activate.csh
3667Lib/venv/scripts/posix/activate.fish
3668Lib/wsgiref/
3669Lib/wsgiref/__init__.py
3670Lib/wsgiref/handlers.py
3671Lib/wsgiref/headers.py
3672Lib/wsgiref/simple_server.py
3673Lib/wsgiref/types.py
3674Lib/wsgiref/util.py
3675Lib/wsgiref/validate.py
3676Lib/xml/
3677Lib/xml/__init__.py
3678Lib/xml/dom/
3679Lib/xml/dom/NodeFilter.py
3680Lib/xml/dom/__init__.py
3681Lib/xml/dom/domreg.py
3682Lib/xml/dom/expatbuilder.py
3683Lib/xml/dom/minicompat.py
3684Lib/xml/dom/minidom.py
3685Lib/xml/dom/pulldom.py
3686Lib/xml/dom/xmlbuilder.py
3687Lib/xml/etree/
3688Lib/xml/etree/ElementInclude.py
3689Lib/xml/etree/ElementPath.py
3690Lib/xml/etree/ElementTree.py
3691Lib/xml/etree/__init__.py
3692Lib/xml/etree/cElementTree.py
3693Lib/xml/parsers/
3694Lib/xml/parsers/__init__.py
3695Lib/xml/parsers/expat.py
3696Lib/xml/sax/
3697Lib/xml/sax/__init__.py
3698Lib/xml/sax/_exceptions.py
3699Lib/xml/sax/expatreader.py
3700Lib/xml/sax/handler.py
3701Lib/xml/sax/saxutils.py
3702Lib/xml/sax/xmlreader.py
3703Lib/xmlrpc/
3704Lib/xmlrpc/__init__.py
3705Lib/xmlrpc/client.py
3706Lib/xmlrpc/server.py
3707Lib/zoneinfo/
3708Lib/zoneinfo/__init__.py
3709Lib/zoneinfo/_common.py
3710Lib/zoneinfo/_tzpath.py
3711Lib/zoneinfo/_zoneinfo.py
3712include/
3713include/Python.h
3714include/abstract.h
3715include/bltinmodule.h
3716include/boolobject.h
3717include/bytearrayobject.h
3718include/bytesobject.h
3719include/ceval.h
3720include/codecs.h
3721include/compile.h
3722include/complexobject.h
3723include/datetime.h
3724include/descrobject.h
3725include/dictobject.h
3726include/dynamic_annotations.h
3727include/enumobject.h
3728include/errcode.h
3729include/exports.h
3730include/fileobject.h
3731include/fileutils.h
3732include/floatobject.h
3733include/frameobject.h
3734include/genericaliasobject.h
3735include/import.h
3736include/intrcheck.h
3737include/iterobject.h
3738include/listobject.h
3739include/longobject.h
3740include/marshal.h
3741include/memoryobject.h
3742include/methodobject.h
3743include/modsupport.h
3744include/moduleobject.h
3745include/object.h
3746include/objimpl.h
3747include/opcode.h
3748include/osdefs.h
3749include/osmodule.h
3750include/patchlevel.h
3751include/py_curses.h
3752include/pybuffer.h
3753include/pycapsule.h
3754include/pyconfig.h
3755include/pydtrace.h
3756include/pyerrors.h
3757include/pyexpat.h
3758include/pyframe.h
3759include/pyhash.h
3760include/pylifecycle.h
3761include/pymacconfig.h
3762include/pymacro.h
3763include/pymath.h
3764include/pymem.h
3765include/pyport.h
3766include/pystate.h
3767include/pystrcmp.h
3768include/pystrtod.h
3769include/pythonrun.h
3770include/pythread.h
3771include/pytypedefs.h
3772include/rangeobject.h
3773include/setobject.h
3774include/sliceobject.h
3775include/structmember.h
3776include/structseq.h
3777include/sysmodule.h
3778include/token.h
3779include/traceback.h
3780include/tracemalloc.h
3781include/tupleobject.h
3782include/typeslots.h
3783include/unicodeobject.h
3784include/warnings.h
3785include/weakrefobject.h
3786include/cpython/
3787include/cpython/abstract.h
3788include/cpython/bytearrayobject.h
3789include/cpython/bytesobject.h
3790include/cpython/cellobject.h
3791include/cpython/ceval.h
3792include/cpython/classobject.h
3793include/cpython/code.h
3794include/cpython/compile.h
3795include/cpython/complexobject.h
3796include/cpython/context.h
3797include/cpython/descrobject.h
3798include/cpython/dictobject.h
3799include/cpython/fileobject.h
3800include/cpython/fileutils.h
3801include/cpython/floatobject.h
3802include/cpython/frameobject.h
3803include/cpython/funcobject.h
3804include/cpython/genobject.h
3805include/cpython/import.h
3806include/cpython/initconfig.h
3807include/cpython/listobject.h
3808include/cpython/longintrepr.h
3809include/cpython/longobject.h
3810include/cpython/methodobject.h
3811include/cpython/modsupport.h
3812include/cpython/object.h
3813include/cpython/objimpl.h
3814include/cpython/odictobject.h
3815include/cpython/picklebufobject.h
3816include/cpython/pthread_stubs.h
3817include/cpython/pyctype.h
3818include/cpython/pydebug.h
3819include/cpython/pyerrors.h
3820include/cpython/pyfpe.h
3821include/cpython/pyframe.h
3822include/cpython/pylifecycle.h
3823include/cpython/pymem.h
3824include/cpython/pystate.h
3825include/cpython/pythonrun.h
3826include/cpython/pythread.h
3827include/cpython/pytime.h
3828include/cpython/setobject.h
3829include/cpython/sysmodule.h
3830include/cpython/traceback.h
3831include/cpython/tupleobject.h
3832include/cpython/unicodeobject.h
3833include/cpython/warnings.h
3834include/cpython/weakrefobject.h
3835include/internal/
3836include/internal/pycore_abstract.h
3837include/internal/pycore_accu.h
3838include/internal/pycore_asdl.h
3839include/internal/pycore_ast.h
3840include/internal/pycore_ast_state.h
3841include/internal/pycore_atomic.h
3842include/internal/pycore_atomic_funcs.h
3843include/internal/pycore_bitutils.h
3844include/internal/pycore_blocks_output_buffer.h
3845include/internal/pycore_bytes_methods.h
3846include/internal/pycore_bytesobject.h
3847include/internal/pycore_call.h
3848include/internal/pycore_ceval.h
3849include/internal/pycore_code.h
3850include/internal/pycore_compile.h
3851include/internal/pycore_condvar.h
3852include/internal/pycore_context.h
3853include/internal/pycore_dict.h
3854include/internal/pycore_dtoa.h
3855include/internal/pycore_emscripten_signal.h
3856include/internal/pycore_exceptions.h
3857include/internal/pycore_fileutils.h
3858include/internal/pycore_floatobject.h
3859include/internal/pycore_format.h
3860include/internal/pycore_frame.h
3861include/internal/pycore_function.h
3862include/internal/pycore_gc.h
3863include/internal/pycore_genobject.h
3864include/internal/pycore_getopt.h
3865include/internal/pycore_gil.h
3866include/internal/pycore_global_objects.h
3867include/internal/pycore_global_strings.h
3868include/internal/pycore_hamt.h
3869include/internal/pycore_hashtable.h
3870include/internal/pycore_import.h
3871include/internal/pycore_initconfig.h
3872include/internal/pycore_interp.h
3873include/internal/pycore_interpreteridobject.h
3874include/internal/pycore_list.h
3875include/internal/pycore_long.h
3876include/internal/pycore_moduleobject.h
3877include/internal/pycore_namespace.h
3878include/internal/pycore_object.h
3879include/internal/pycore_opcode.h
3880include/internal/pycore_parser.h
3881include/internal/pycore_pathconfig.h
3882include/internal/pycore_pyarena.h
3883include/internal/pycore_pyerrors.h
3884include/internal/pycore_pyhash.h
3885include/internal/pycore_pylifecycle.h
3886include/internal/pycore_pymath.h
3887include/internal/pycore_pymem.h
3888include/internal/pycore_pystate.h
3889include/internal/pycore_runtime.h
3890include/internal/pycore_runtime_init.h
3891include/internal/pycore_signal.h
3892include/internal/pycore_sliceobject.h
3893include/internal/pycore_strhex.h
3894include/internal/pycore_structseq.h
3895include/internal/pycore_symtable.h
3896include/internal/pycore_sysmodule.h
3897include/internal/pycore_traceback.h
3898include/internal/pycore_tuple.h
3899include/internal/pycore_typeobject.h
3900include/internal/pycore_ucnhash.h
3901include/internal/pycore_unicodeobject.h
3902include/internal/pycore_unionobject.h
3903include/internal/pycore_warnings.h
3904libs/
3905libs/_tkinter.lib
3906libs/python3.lib
3907libs/python311.lib
3908
3909sent 40,511,696 bytes received 22,655 bytes 4,768,747.18 bytes/sec
3910total size is 40,431,724 speedup is 1.00
3911# Leave include and libs in bindir so pip/setuptools will work.
3912# Also copy include and lib directories to common locations for
3913# our source code.
3914/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv --delete '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/include/* \
3915 /home/goddard/ucsf/chimerax/build/include/python3.11
3916sending incremental file list
3917created directory /home/goddard/ucsf/chimerax/build/include/python3.11
3918Python.h
3919abstract.h
3920bltinmodule.h
3921boolobject.h
3922bytearrayobject.h
3923bytesobject.h
3924ceval.h
3925codecs.h
3926compile.h
3927complexobject.h
3928datetime.h
3929descrobject.h
3930dictobject.h
3931dynamic_annotations.h
3932enumobject.h
3933errcode.h
3934exports.h
3935fileobject.h
3936fileutils.h
3937floatobject.h
3938frameobject.h
3939genericaliasobject.h
3940import.h
3941intrcheck.h
3942iterobject.h
3943listobject.h
3944longobject.h
3945marshal.h
3946memoryobject.h
3947methodobject.h
3948modsupport.h
3949moduleobject.h
3950object.h
3951objimpl.h
3952opcode.h
3953osdefs.h
3954osmodule.h
3955patchlevel.h
3956py_curses.h
3957pybuffer.h
3958pycapsule.h
3959pyconfig.h
3960pydtrace.h
3961pyerrors.h
3962pyexpat.h
3963pyframe.h
3964pyhash.h
3965pylifecycle.h
3966pymacconfig.h
3967pymacro.h
3968pymath.h
3969pymem.h
3970pyport.h
3971pystate.h
3972pystrcmp.h
3973pystrtod.h
3974pythonrun.h
3975pythread.h
3976pytypedefs.h
3977rangeobject.h
3978setobject.h
3979sliceobject.h
3980structmember.h
3981structseq.h
3982sysmodule.h
3983token.h
3984traceback.h
3985tracemalloc.h
3986tupleobject.h
3987typeslots.h
3988unicodeobject.h
3989warnings.h
3990weakrefobject.h
3991cpython/
3992cpython/abstract.h
3993cpython/bytearrayobject.h
3994cpython/bytesobject.h
3995cpython/cellobject.h
3996cpython/ceval.h
3997cpython/classobject.h
3998cpython/code.h
3999cpython/compile.h
4000cpython/complexobject.h
4001cpython/context.h
4002cpython/descrobject.h
4003cpython/dictobject.h
4004cpython/fileobject.h
4005cpython/fileutils.h
4006cpython/floatobject.h
4007cpython/frameobject.h
4008cpython/funcobject.h
4009cpython/genobject.h
4010cpython/import.h
4011cpython/initconfig.h
4012cpython/listobject.h
4013cpython/longintrepr.h
4014cpython/longobject.h
4015cpython/methodobject.h
4016cpython/modsupport.h
4017cpython/object.h
4018cpython/objimpl.h
4019cpython/odictobject.h
4020cpython/picklebufobject.h
4021cpython/pthread_stubs.h
4022cpython/pyctype.h
4023cpython/pydebug.h
4024cpython/pyerrors.h
4025cpython/pyfpe.h
4026cpython/pyframe.h
4027cpython/pylifecycle.h
4028cpython/pymem.h
4029cpython/pystate.h
4030cpython/pythonrun.h
4031cpython/pythread.h
4032cpython/pytime.h
4033cpython/setobject.h
4034cpython/sysmodule.h
4035cpython/traceback.h
4036cpython/tupleobject.h
4037cpython/unicodeobject.h
4038cpython/warnings.h
4039cpython/weakrefobject.h
4040internal/
4041internal/pycore_abstract.h
4042internal/pycore_accu.h
4043internal/pycore_asdl.h
4044internal/pycore_ast.h
4045internal/pycore_ast_state.h
4046internal/pycore_atomic.h
4047internal/pycore_atomic_funcs.h
4048internal/pycore_bitutils.h
4049internal/pycore_blocks_output_buffer.h
4050internal/pycore_bytes_methods.h
4051internal/pycore_bytesobject.h
4052internal/pycore_call.h
4053internal/pycore_ceval.h
4054internal/pycore_code.h
4055internal/pycore_compile.h
4056internal/pycore_condvar.h
4057internal/pycore_context.h
4058internal/pycore_dict.h
4059internal/pycore_dtoa.h
4060internal/pycore_emscripten_signal.h
4061internal/pycore_exceptions.h
4062internal/pycore_fileutils.h
4063internal/pycore_floatobject.h
4064internal/pycore_format.h
4065internal/pycore_frame.h
4066internal/pycore_function.h
4067internal/pycore_gc.h
4068internal/pycore_genobject.h
4069internal/pycore_getopt.h
4070internal/pycore_gil.h
4071internal/pycore_global_objects.h
4072internal/pycore_global_strings.h
4073internal/pycore_hamt.h
4074internal/pycore_hashtable.h
4075internal/pycore_import.h
4076internal/pycore_initconfig.h
4077internal/pycore_interp.h
4078internal/pycore_interpreteridobject.h
4079internal/pycore_list.h
4080internal/pycore_long.h
4081internal/pycore_moduleobject.h
4082internal/pycore_namespace.h
4083internal/pycore_object.h
4084internal/pycore_opcode.h
4085internal/pycore_parser.h
4086internal/pycore_pathconfig.h
4087internal/pycore_pyarena.h
4088internal/pycore_pyerrors.h
4089internal/pycore_pyhash.h
4090internal/pycore_pylifecycle.h
4091internal/pycore_pymath.h
4092internal/pycore_pymem.h
4093internal/pycore_pystate.h
4094internal/pycore_runtime.h
4095internal/pycore_runtime_init.h
4096internal/pycore_signal.h
4097internal/pycore_sliceobject.h
4098internal/pycore_strhex.h
4099internal/pycore_structseq.h
4100internal/pycore_symtable.h
4101internal/pycore_sysmodule.h
4102internal/pycore_traceback.h
4103internal/pycore_tuple.h
4104internal/pycore_typeobject.h
4105internal/pycore_ucnhash.h
4106internal/pycore_unicodeobject.h
4107internal/pycore_unionobject.h
4108internal/pycore_warnings.h
4109
4110sent 895,489 bytes received 3,702 bytes 1,798,382.00 bytes/sec
4111total size is 884,089 speedup is 0.98
4112/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/libs/* /home/goddard/ucsf/chimerax/build/lib
4113sending incremental file list
4114_tkinter.lib
4115python3.lib
4116python311.lib
4117
4118sent 546,257 bytes received 73 bytes 1,092,660.00 bytes/sec
4119total size is 545,926 speedup is 1.00
4120# remove unused libraries
4121rm -rf /home/goddard/ucsf/chimerax/build/bin/Lib/config-*/*.{a,dylib}
4122# Since pip comes with Python 3.5, update it now so installs on
4123# Windows will work. Wheel is needed so bdist_wheel will work.
4124/home/goddard/ucsf/chimerax/build/bin/python.exe -I -m ensurepip --upgrade
4125Looking in links: c:\Users\goddard\AppData\Local\Temp\tmpdhxlp9wv
4126Processing c:\users\goddard\appdata\local\temp\tmpdhxlp9wv\setuptools-65.5.0-py3-none-any.whl
4127Processing c:\users\goddard\appdata\local\temp\tmpdhxlp9wv\pip-24.0-py3-none-any.whl
4128Installing collected packages: setuptools, pip
4129 WARNING: The scripts pip3.11.exe and pip3.exe are installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\build\bin\Scripts' which is not on PATH.
4130 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
4131Successfully installed pip-24.0 setuptools-65.5.0
4132/home/goddard/ucsf/chimerax/build/bin/python.exe -I -m pip install --upgrade pip==25.2
4133Collecting pip==25.2
4134 Downloading pip-25.2-py3-none-any.whl.metadata (4.7 kB)
4135Downloading pip-25.2-py3-none-any.whl (1.8 MB)
4136 ---------------------------------------- 1.8/1.8 MB 5.9 MB/s eta 0:00:00
4137Installing collected packages: pip
4138 Attempting uninstall: pip
4139 Found existing installation: pip 24.0
4140 Uninstalling pip-24.0:
4141 Successfully uninstalled pip-24.0
4142 WARNING: The scripts pip.exe, pip3.11.exe and pip3.exe are installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\build\bin\Scripts' which is not on PATH.
4143 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
4144Successfully installed pip-25.2
4145/home/goddard/ucsf/chimerax/build/bin/python.exe -I -m pip install --upgrade setuptools==80.9.0
4146Collecting setuptools==80.9.0
4147 Downloading setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
4148Downloading setuptools-80.9.0-py3-none-any.whl (1.2 MB)
4149 ---------------------------------------- 1.2/1.2 MB 8.6 MB/s 0:00:00
4150Installing collected packages: setuptools
4151 Attempting uninstall: setuptools
4152 Found existing installation: setuptools 65.5.0
4153 Uninstalling setuptools-65.5.0:
4154 Successfully uninstalled setuptools-65.5.0
4155Successfully installed setuptools-80.9.0
4156/home/goddard/ucsf/chimerax/build/bin/python.exe -I -m pip install --upgrade wheel==0.45.1
4157Collecting wheel==0.45.1
4158 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
4159Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
4160Installing collected packages: wheel
4161 WARNING: The script wheel.exe is installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\build\bin\Scripts' which is not on PATH.
4162 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
4163Successfully installed wheel-0.45.1
4164/home/goddard/ucsf/chimerax/build/bin/python.exe -I -m pip install --upgrade build==1.3.0
4165Collecting build==1.3.0
4166 Downloading build-1.3.0-py3-none-any.whl.metadata (5.6 kB)
4167Collecting packaging>=19.1 (from build==1.3.0)
4168 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
4169Collecting pyproject_hooks (from build==1.3.0)
4170 Using cached pyproject_hooks-1.2.0-py3-none-any.whl.metadata (1.3 kB)
4171Collecting colorama (from build==1.3.0)
4172 Using cached colorama-0.4.6-py2.py3-none-any.whl.metadata (17 kB)
4173Downloading build-1.3.0-py3-none-any.whl (23 kB)
4174Using cached packaging-25.0-py3-none-any.whl (66 kB)
4175Using cached colorama-0.4.6-py2.py3-none-any.whl (25 kB)
4176Using cached pyproject_hooks-1.2.0-py3-none-any.whl (10 kB)
4177Installing collected packages: pyproject_hooks, packaging, colorama, build
4178 WARNING: The script pyproject-build.exe is installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\build\bin\Scripts' which is not on PATH.
4179 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
4180
4181Successfully installed build-1.3.0 colorama-0.4.6 packaging-25.0 pyproject_hooks-1.2.0
4182# double check that _ssl was successfully made
4183test -f /home/goddard/ucsf/chimerax/build/bin/DLLs/_ssl.*pyd
4184# double check that pyexpat was successfully made
4185test -f /home/goddard/ucsf/chimerax/build/bin/DLLs/pyexpat.*pyd
4186make[4]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/Python'
4187make -C pips install
4188make[4]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/pips'
4189make[4]: Nothing to be done for 'install'.
4190make[4]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/pips'
4191make -C PyQt install
4192make[4]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
4193make -f Makefile.wheel.qt6 BASE_VERSION=6.9 PYQT_MINOR_VERSION=1 QT_MINOR_VERSION=2 PYQTWE_MINOR_VERSION=0 PYQT_LICENSE=gpl install
4194make[5]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
4195/home/goddard/ucsf/chimerax/build/bin/python.exe -I -m pip install -U PyQt6-sip==13.10.2 PyQt6==6.9.1 PyQt6-Qt6==6.9.2 PyQt6_WebEngine==6.9.0 PyQt6-WebEngine-Qt6==6.9.2
4196Collecting PyQt6-sip==13.10.2
4197 Downloading pyqt6_sip-13.10.2-cp311-cp311-win_amd64.whl.metadata (515 bytes)
4198Collecting PyQt6==6.9.1
4199 Downloading pyqt6-6.9.1-cp39-abi3-win_amd64.whl.metadata (2.2 kB)
4200Collecting PyQt6-Qt6==6.9.2
4201 Downloading pyqt6_qt6-6.9.2-py3-none-win_amd64.whl.metadata (551 bytes)
4202Collecting PyQt6_WebEngine==6.9.0
4203 Downloading PyQt6_WebEngine-6.9.0-cp39-abi3-win_amd64.whl.metadata (1.9 kB)
4204Collecting PyQt6-WebEngine-Qt6==6.9.2
4205 Downloading pyqt6_webengine_qt6-6.9.2-py3-none-win_amd64.whl.metadata (591 bytes)
4206Downloading pyqt6_sip-13.10.2-cp311-cp311-win_amd64.whl (53 kB)
4207Downloading pyqt6-6.9.1-cp39-abi3-win_amd64.whl (25.7 MB)
4208 ---------------------------------------- 25.7/25.7 MB 5.3 MB/s 0:00:04
4209Downloading pyqt6_qt6-6.9.2-py3-none-win_amd64.whl (74.1 MB)
4210 ---------------------------------------- 74.1/74.1 MB 5.0 MB/s 0:00:14
4211Downloading PyQt6_WebEngine-6.9.0-cp39-abi3-win_amd64.whl (237 kB)
4212Downloading pyqt6_webengine_qt6-6.9.2-py3-none-win_amd64.whl (127.0 MB)
4213 ---------------------------------------- 127.0/127.0 MB 5.1 MB/s 0:00:25
4214Installing collected packages: PyQt6-WebEngine-Qt6, PyQt6-Qt6, PyQt6-sip, PyQt6, PyQt6_WebEngine
4215 WARNING: The scripts pylupdate6.exe and pyuic6.exe are installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\build\bin\Scripts' which is not on PATH.
4216 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
4217
4218Successfully installed PyQt6-6.9.1 PyQt6-Qt6-6.9.2 PyQt6-WebEngine-Qt6-6.9.2 PyQt6-sip-13.10.2 PyQt6_WebEngine-6.9.0
4219make[5]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
4220make[4]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
4221make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs'
4222make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs'
4223prebuilt=`pwd`/prebuilt-Windows64.tar.bz2 && cd /home/goddard/ucsf/chimerax/build && tar --exclude ./tmp -cjf $prebuilt .
4224make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs'
4225Finished prereq install at Tue Sep 23 11:50:41 PDT 2025
4226make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs'
4227make -C prereqs app-install
4228make[2]: Entering directory '/home/goddard/ucsf/chimerax/prereqs'
4229make -C /home/goddard/ucsf/chimerax build-app-dirs
4230make[3]: Entering directory '/home/goddard/ucsf/chimerax'
4231mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app /home/goddard/ucsf/chimerax/ChimeraX.app/bin /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share
4232mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/Lib/site-packages
4233make[3]: Leaving directory '/home/goddard/ucsf/chimerax'
4234make -C win32 app-install
4235make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/win32'
4236if [ -d '/cygdrive/c/Program Files (x86)/Microsoft Visual Studio/2019/Community/VC/Redist/MSVC/14.24.28127'/x64/Microsoft.VC142.CRT ]; then /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv '/cygdrive/c/Program Files (x86)/Microsoft Visual Studio/2019/Community/VC/Redist/MSVC/14.24.28127'/x64/Microsoft.VC142.CRT/*.dll /home/goddard/ucsf/chimerax/build/bin; fi
4237make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/win32'
4238make -C ffmpeg app-install
4239make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/ffmpeg'
4240/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ffmpeg-3.2.4-Windows.exe /home/goddard/ucsf/chimerax/ChimeraX.app/bin/ffmpeg.exe
4241sending incremental file list
4242ffmpeg-3.2.4-Windows.exe
4243
4244sent 40,349,922 bytes received 35 bytes 80,699,914.00 bytes/sec
4245total size is 40,339,968 speedup is 1.00
4246make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/ffmpeg'
4247make -C ambertools app-install
4248make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/ambertools'
4249curl --silent --show-error --fail --insecure -O https://cxtoolshed.rbvi.ucsf.edu/prereqs/ambertools/ambertools-20-Windows.tar.bz2
4250mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/amber20
4251# Antechamber complains bitterly about a missing tmp directory otherwise
4252mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/amber20/tmp
4253tar xf ambertools-20-Windows.tar.bz2 -C /home/goddard/ucsf/chimerax/ChimeraX.app/bin/amber20 --no-same-owner
4254make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/ambertools'
4255make -C Python app-install
4256make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/Python'
4257tar xf python-3.11.9-win-amd64.tar.bz2 -C /home/goddard/ucsf/chimerax/build/tmp --no-same-owner
4258/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv /home/goddard/ucsf/chimerax/build/bin/python.exe /home/goddard/ucsf/chimerax/ChimeraX.app/bin
4259sending incremental file list
4260python.exe
4261
4262sent 103,301 bytes received 35 bytes 206,672.00 bytes/sec
4263total size is 103,192 speedup is 1.00
4264# need include and libs so pip install will work
4265/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv --exclude='site-packages/*' --exclude='test/*' --exclude=__pycache__ --delete\
4266 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/DLLs \
4267 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/Lib \
4268 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/include \
4269 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/libs \
4270 '/home/goddard/ucsf/chimerax/build/tmp/python-3.11.9-win-amd64'/*.dll \
4271 /home/goddard/ucsf/chimerax/ChimeraX.app/bin
4272sending incremental file list
4273python3.dll
4274python311.dll
4275vcruntime140.dll
4276vcruntime140_1.dll
4277DLLs/
4278DLLs/_asyncio.pyd
4279DLLs/_bz2.pyd
4280DLLs/_ctypes.pyd
4281DLLs/_ctypes_test.pyd
4282DLLs/_decimal.pyd
4283DLLs/_elementtree.pyd
4284DLLs/_hashlib.pyd
4285DLLs/_lzma.pyd
4286DLLs/_msi.pyd
4287DLLs/_multiprocessing.pyd
4288DLLs/_overlapped.pyd
4289DLLs/_queue.pyd
4290DLLs/_socket.pyd
4291DLLs/_sqlite3.pyd
4292DLLs/_ssl.pyd
4293DLLs/_testbuffer.pyd
4294DLLs/_testcapi.pyd
4295DLLs/_testconsole.pyd
4296DLLs/_testimportmultiple.pyd
4297DLLs/_testinternalcapi.pyd
4298DLLs/_testmultiphase.pyd
4299DLLs/_tkinter.pyd
4300DLLs/_uuid.pyd
4301DLLs/_zoneinfo.pyd
4302DLLs/libcrypto-3.dll
4303DLLs/libffi-8.dll
4304DLLs/libssl-3.dll
4305DLLs/py.ico
4306DLLs/pyc.ico
4307DLLs/pyd.ico
4308DLLs/pyexpat.pyd
4309DLLs/python_lib.cat
4310DLLs/python_tools.cat
4311DLLs/select.pyd
4312DLLs/sqlite3.dll
4313DLLs/tcl86t.dll
4314DLLs/tk86t.dll
4315DLLs/unicodedata.pyd
4316DLLs/winsound.pyd
4317Lib/
4318Lib/__future__.py
4319Lib/__hello__.py
4320Lib/_aix_support.py
4321Lib/_bootsubprocess.py
4322Lib/_collections_abc.py
4323Lib/_compat_pickle.py
4324Lib/_compression.py
4325Lib/_markupbase.py
4326Lib/_osx_support.py
4327Lib/_py_abc.py
4328Lib/_pydecimal.py
4329Lib/_pyio.py
4330Lib/_sitebuiltins.py
4331Lib/_strptime.py
4332Lib/_threading_local.py
4333Lib/_weakrefset.py
4334Lib/abc.py
4335Lib/aifc.py
4336Lib/antigravity.py
4337Lib/argparse.py
4338Lib/ast.py
4339Lib/asynchat.py
4340Lib/asyncore.py
4341Lib/base64.py
4342Lib/bdb.py
4343Lib/bisect.py
4344Lib/bz2.py
4345Lib/cProfile.py
4346Lib/calendar.py
4347Lib/cgi.py
4348Lib/cgitb.py
4349Lib/chunk.py
4350Lib/cmd.py
4351Lib/code.py
4352Lib/codecs.py
4353Lib/codeop.py
4354Lib/colorsys.py
4355Lib/compileall.py
4356Lib/configparser.py
4357Lib/contextlib.py
4358Lib/contextvars.py
4359Lib/copy.py
4360Lib/copyreg.py
4361Lib/crypt.py
4362Lib/csv.py
4363Lib/dataclasses.py
4364Lib/datetime.py
4365Lib/decimal.py
4366Lib/difflib.py
4367Lib/dis.py
4368Lib/doctest.py
4369Lib/enum.py
4370Lib/filecmp.py
4371Lib/fileinput.py
4372Lib/fnmatch.py
4373Lib/fractions.py
4374Lib/ftplib.py
4375Lib/functools.py
4376Lib/genericpath.py
4377Lib/getopt.py
4378Lib/getpass.py
4379Lib/gettext.py
4380Lib/glob.py
4381Lib/graphlib.py
4382Lib/gzip.py
4383Lib/hashlib.py
4384Lib/heapq.py
4385Lib/hmac.py
4386Lib/imaplib.py
4387Lib/imghdr.py
4388Lib/imp.py
4389Lib/inspect.py
4390Lib/io.py
4391Lib/ipaddress.py
4392Lib/keyword.py
4393Lib/linecache.py
4394Lib/locale.py
4395Lib/lzma.py
4396Lib/mailbox.py
4397Lib/mailcap.py
4398Lib/mimetypes.py
4399Lib/modulefinder.py
4400Lib/netrc.py
4401Lib/nntplib.py
4402Lib/ntpath.py
4403Lib/nturl2path.py
4404Lib/numbers.py
4405Lib/opcode.py
4406Lib/operator.py
4407Lib/optparse.py
4408Lib/os.py
4409Lib/pathlib.py
4410Lib/pdb.py
4411Lib/pickle.py
4412Lib/pickletools.py
4413Lib/pipes.py
4414Lib/pkgutil.py
4415Lib/platform.py
4416Lib/plistlib.py
4417Lib/poplib.py
4418Lib/posixpath.py
4419Lib/pprint.py
4420Lib/profile.py
4421Lib/pstats.py
4422Lib/pty.py
4423Lib/py_compile.py
4424Lib/pyclbr.py
4425Lib/pydoc.py
4426Lib/queue.py
4427Lib/quopri.py
4428Lib/random.py
4429Lib/reprlib.py
4430Lib/rlcompleter.py
4431Lib/runpy.py
4432Lib/sched.py
4433Lib/secrets.py
4434Lib/selectors.py
4435Lib/shelve.py
4436Lib/shlex.py
4437Lib/shutil.py
4438Lib/signal.py
4439Lib/site.py
4440Lib/smtpd.py
4441Lib/smtplib.py
4442Lib/sndhdr.py
4443Lib/socket.py
4444Lib/socketserver.py
4445Lib/sre_compile.py
4446Lib/sre_constants.py
4447Lib/sre_parse.py
4448Lib/ssl.py
4449Lib/stat.py
4450Lib/statistics.py
4451Lib/string.py
4452Lib/stringprep.py
4453Lib/struct.py
4454Lib/subprocess.py
4455Lib/sunau.py
4456Lib/symtable.py
4457Lib/sysconfig.py
4458Lib/tabnanny.py
4459Lib/tarfile.py
4460Lib/telnetlib.py
4461Lib/tempfile.py
4462Lib/textwrap.py
4463Lib/this.py
4464Lib/threading.py
4465Lib/timeit.py
4466Lib/token.py
4467Lib/tokenize.py
4468Lib/trace.py
4469Lib/traceback.py
4470Lib/tracemalloc.py
4471Lib/tty.py
4472Lib/turtle.py
4473Lib/types.py
4474Lib/typing.py
4475Lib/uu.py
4476Lib/uuid.py
4477Lib/warnings.py
4478Lib/wave.py
4479Lib/weakref.py
4480Lib/webbrowser.py
4481Lib/xdrlib.py
4482Lib/zipapp.py
4483Lib/zipfile.py
4484Lib/zipimport.py
4485Lib/__phello__/
4486Lib/__phello__/__init__.py
4487Lib/__phello__/spam.py
4488Lib/__phello__/ham/
4489Lib/__phello__/ham/__init__.py
4490Lib/__phello__/ham/eggs.py
4491Lib/asyncio/
4492Lib/asyncio/__init__.py
4493Lib/asyncio/__main__.py
4494Lib/asyncio/base_events.py
4495Lib/asyncio/base_futures.py
4496Lib/asyncio/base_subprocess.py
4497Lib/asyncio/base_tasks.py
4498Lib/asyncio/constants.py
4499Lib/asyncio/coroutines.py
4500Lib/asyncio/events.py
4501Lib/asyncio/exceptions.py
4502Lib/asyncio/format_helpers.py
4503Lib/asyncio/futures.py
4504Lib/asyncio/locks.py
4505Lib/asyncio/log.py
4506Lib/asyncio/mixins.py
4507Lib/asyncio/proactor_events.py
4508Lib/asyncio/protocols.py
4509Lib/asyncio/queues.py
4510Lib/asyncio/runners.py
4511Lib/asyncio/selector_events.py
4512Lib/asyncio/sslproto.py
4513Lib/asyncio/staggered.py
4514Lib/asyncio/streams.py
4515Lib/asyncio/subprocess.py
4516Lib/asyncio/taskgroups.py
4517Lib/asyncio/tasks.py
4518Lib/asyncio/threads.py
4519Lib/asyncio/timeouts.py
4520Lib/asyncio/transports.py
4521Lib/asyncio/trsock.py
4522Lib/asyncio/unix_events.py
4523Lib/asyncio/windows_events.py
4524Lib/asyncio/windows_utils.py
4525Lib/collections/
4526Lib/collections/__init__.py
4527Lib/collections/abc.py
4528Lib/concurrent/
4529Lib/concurrent/__init__.py
4530Lib/concurrent/futures/
4531Lib/concurrent/futures/__init__.py
4532Lib/concurrent/futures/_base.py
4533Lib/concurrent/futures/process.py
4534Lib/concurrent/futures/thread.py
4535Lib/ctypes/
4536Lib/ctypes/__init__.py
4537Lib/ctypes/_aix.py
4538Lib/ctypes/_endian.py
4539Lib/ctypes/util.py
4540Lib/ctypes/wintypes.py
4541Lib/ctypes/macholib/
4542Lib/ctypes/macholib/README.ctypes
4543Lib/ctypes/macholib/__init__.py
4544Lib/ctypes/macholib/dyld.py
4545Lib/ctypes/macholib/dylib.py
4546Lib/ctypes/macholib/fetch_macholib
4547Lib/ctypes/macholib/fetch_macholib.bat
4548Lib/ctypes/macholib/framework.py
4549Lib/ctypes/test/
4550Lib/curses/
4551Lib/curses/__init__.py
4552Lib/curses/ascii.py
4553Lib/curses/has_key.py
4554Lib/curses/panel.py
4555Lib/curses/textpad.py
4556Lib/dbm/
4557Lib/dbm/__init__.py
4558Lib/dbm/dumb.py
4559Lib/dbm/gnu.py
4560Lib/dbm/ndbm.py
4561Lib/distutils/
4562Lib/distutils/README
4563Lib/distutils/__init__.py
4564Lib/distutils/_msvccompiler.py
4565Lib/distutils/archive_util.py
4566Lib/distutils/bcppcompiler.py
4567Lib/distutils/ccompiler.py
4568Lib/distutils/cmd.py
4569Lib/distutils/config.py
4570Lib/distutils/core.py
4571Lib/distutils/cygwinccompiler.py
4572Lib/distutils/debug.py
4573Lib/distutils/dep_util.py
4574Lib/distutils/dir_util.py
4575Lib/distutils/dist.py
4576Lib/distutils/errors.py
4577Lib/distutils/extension.py
4578Lib/distutils/fancy_getopt.py
4579Lib/distutils/file_util.py
4580Lib/distutils/filelist.py
4581Lib/distutils/log.py
4582Lib/distutils/msvc9compiler.py
4583Lib/distutils/msvccompiler.py
4584Lib/distutils/spawn.py
4585Lib/distutils/sysconfig.py
4586Lib/distutils/text_file.py
4587Lib/distutils/unixccompiler.py
4588Lib/distutils/util.py
4589Lib/distutils/version.py
4590Lib/distutils/versionpredicate.py
4591Lib/distutils/command/
4592Lib/distutils/command/__init__.py
4593Lib/distutils/command/bdist.py
4594Lib/distutils/command/bdist_dumb.py
4595Lib/distutils/command/bdist_rpm.py
4596Lib/distutils/command/build.py
4597Lib/distutils/command/build_clib.py
4598Lib/distutils/command/build_ext.py
4599Lib/distutils/command/build_py.py
4600Lib/distutils/command/build_scripts.py
4601Lib/distutils/command/check.py
4602Lib/distutils/command/clean.py
4603Lib/distutils/command/command_template
4604Lib/distutils/command/config.py
4605Lib/distutils/command/install.py
4606Lib/distutils/command/install_data.py
4607Lib/distutils/command/install_egg_info.py
4608Lib/distutils/command/install_headers.py
4609Lib/distutils/command/install_lib.py
4610Lib/distutils/command/install_scripts.py
4611Lib/distutils/command/register.py
4612Lib/distutils/command/sdist.py
4613Lib/distutils/command/upload.py
4614Lib/distutils/tests/
4615Lib/distutils/tests/Setup.sample
4616Lib/distutils/tests/__init__.py
4617Lib/distutils/tests/includetest.rst
4618Lib/distutils/tests/support.py
4619Lib/distutils/tests/test_archive_util.py
4620Lib/distutils/tests/test_bdist.py
4621Lib/distutils/tests/test_bdist_dumb.py
4622Lib/distutils/tests/test_bdist_rpm.py
4623Lib/distutils/tests/test_build.py
4624Lib/distutils/tests/test_build_clib.py
4625Lib/distutils/tests/test_build_ext.py
4626Lib/distutils/tests/test_build_py.py
4627Lib/distutils/tests/test_build_scripts.py
4628Lib/distutils/tests/test_check.py
4629Lib/distutils/tests/test_clean.py
4630Lib/distutils/tests/test_cmd.py
4631Lib/distutils/tests/test_config.py
4632Lib/distutils/tests/test_config_cmd.py
4633Lib/distutils/tests/test_core.py
4634Lib/distutils/tests/test_cygwinccompiler.py
4635Lib/distutils/tests/test_dep_util.py
4636Lib/distutils/tests/test_dir_util.py
4637Lib/distutils/tests/test_dist.py
4638Lib/distutils/tests/test_extension.py
4639Lib/distutils/tests/test_file_util.py
4640Lib/distutils/tests/test_filelist.py
4641Lib/distutils/tests/test_install.py
4642Lib/distutils/tests/test_install_data.py
4643Lib/distutils/tests/test_install_headers.py
4644Lib/distutils/tests/test_install_lib.py
4645Lib/distutils/tests/test_install_scripts.py
4646Lib/distutils/tests/test_log.py
4647Lib/distutils/tests/test_msvc9compiler.py
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5145Lib/multiprocessing/__init__.py
5146Lib/multiprocessing/connection.py
5147Lib/multiprocessing/context.py
5148Lib/multiprocessing/forkserver.py
5149Lib/multiprocessing/heap.py
5150Lib/multiprocessing/managers.py
5151Lib/multiprocessing/pool.py
5152Lib/multiprocessing/popen_fork.py
5153Lib/multiprocessing/popen_forkserver.py
5154Lib/multiprocessing/popen_spawn_posix.py
5155Lib/multiprocessing/popen_spawn_win32.py
5156Lib/multiprocessing/process.py
5157Lib/multiprocessing/queues.py
5158Lib/multiprocessing/reduction.py
5159Lib/multiprocessing/resource_sharer.py
5160Lib/multiprocessing/resource_tracker.py
5161Lib/multiprocessing/shared_memory.py
5162Lib/multiprocessing/sharedctypes.py
5163Lib/multiprocessing/spawn.py
5164Lib/multiprocessing/synchronize.py
5165Lib/multiprocessing/util.py
5166Lib/multiprocessing/dummy/
5167Lib/multiprocessing/dummy/__init__.py
5168Lib/multiprocessing/dummy/connection.py
5169Lib/pydoc_data/
5170Lib/pydoc_data/__init__.py
5171Lib/pydoc_data/_pydoc.css
5172Lib/pydoc_data/topics.py
5173Lib/re/
5174Lib/re/__init__.py
5175Lib/re/_casefix.py
5176Lib/re/_compiler.py
5177Lib/re/_constants.py
5178Lib/re/_parser.py
5179Lib/site-packages/
5180Lib/sqlite3/
5181Lib/sqlite3/__init__.py
5182Lib/sqlite3/dbapi2.py
5183Lib/sqlite3/dump.py
5184Lib/test/
5185Lib/tkinter/
5186Lib/tkinter/__init__.py
5187Lib/tkinter/__main__.py
5188Lib/tkinter/colorchooser.py
5189Lib/tkinter/commondialog.py
5190Lib/tkinter/constants.py
5191Lib/tkinter/dialog.py
5192Lib/tkinter/dnd.py
5193Lib/tkinter/filedialog.py
5194Lib/tkinter/font.py
5195Lib/tkinter/messagebox.py
5196Lib/tkinter/scrolledtext.py
5197Lib/tkinter/simpledialog.py
5198Lib/tkinter/tix.py
5199Lib/tkinter/ttk.py
5200Lib/tkinter/test/
5201Lib/tomllib/
5202Lib/tomllib/__init__.py
5203Lib/tomllib/_parser.py
5204Lib/tomllib/_re.py
5205Lib/tomllib/_types.py
5206Lib/turtledemo/
5207Lib/turtledemo/__init__.py
5208Lib/turtledemo/__main__.py
5209Lib/turtledemo/bytedesign.py
5210Lib/turtledemo/chaos.py
5211Lib/turtledemo/clock.py
5212Lib/turtledemo/colormixer.py
5213Lib/turtledemo/forest.py
5214Lib/turtledemo/fractalcurves.py
5215Lib/turtledemo/lindenmayer.py
5216Lib/turtledemo/minimal_hanoi.py
5217Lib/turtledemo/nim.py
5218Lib/turtledemo/paint.py
5219Lib/turtledemo/peace.py
5220Lib/turtledemo/penrose.py
5221Lib/turtledemo/planet_and_moon.py
5222Lib/turtledemo/rosette.py
5223Lib/turtledemo/round_dance.py
5224Lib/turtledemo/sorting_animate.py
5225Lib/turtledemo/tree.py
5226Lib/turtledemo/turtle.cfg
5227Lib/turtledemo/two_canvases.py
5228Lib/turtledemo/yinyang.py
5229Lib/unittest/
5230Lib/unittest/__init__.py
5231Lib/unittest/__main__.py
5232Lib/unittest/_log.py
5233Lib/unittest/async_case.py
5234Lib/unittest/case.py
5235Lib/unittest/loader.py
5236Lib/unittest/main.py
5237Lib/unittest/mock.py
5238Lib/unittest/result.py
5239Lib/unittest/runner.py
5240Lib/unittest/signals.py
5241Lib/unittest/suite.py
5242Lib/unittest/util.py
5243Lib/unittest/test/
5244Lib/urllib/
5245Lib/urllib/__init__.py
5246Lib/urllib/error.py
5247Lib/urllib/parse.py
5248Lib/urllib/request.py
5249Lib/urllib/response.py
5250Lib/urllib/robotparser.py
5251Lib/venv/
5252Lib/venv/__init__.py
5253Lib/venv/__main__.py
5254Lib/venv/scripts/
5255Lib/venv/scripts/common/
5256Lib/venv/scripts/common/Activate.ps1
5257Lib/venv/scripts/common/activate
5258Lib/venv/scripts/nt/
5259Lib/venv/scripts/nt/activate.bat
5260Lib/venv/scripts/nt/deactivate.bat
5261Lib/venv/scripts/nt/python.exe
5262Lib/venv/scripts/nt/pythonw.exe
5263Lib/venv/scripts/posix/
5264Lib/venv/scripts/posix/activate.csh
5265Lib/venv/scripts/posix/activate.fish
5266Lib/wsgiref/
5267Lib/wsgiref/__init__.py
5268Lib/wsgiref/handlers.py
5269Lib/wsgiref/headers.py
5270Lib/wsgiref/simple_server.py
5271Lib/wsgiref/types.py
5272Lib/wsgiref/util.py
5273Lib/wsgiref/validate.py
5274Lib/xml/
5275Lib/xml/__init__.py
5276Lib/xml/dom/
5277Lib/xml/dom/NodeFilter.py
5278Lib/xml/dom/__init__.py
5279Lib/xml/dom/domreg.py
5280Lib/xml/dom/expatbuilder.py
5281Lib/xml/dom/minicompat.py
5282Lib/xml/dom/minidom.py
5283Lib/xml/dom/pulldom.py
5284Lib/xml/dom/xmlbuilder.py
5285Lib/xml/etree/
5286Lib/xml/etree/ElementInclude.py
5287Lib/xml/etree/ElementPath.py
5288Lib/xml/etree/ElementTree.py
5289Lib/xml/etree/__init__.py
5290Lib/xml/etree/cElementTree.py
5291Lib/xml/parsers/
5292Lib/xml/parsers/__init__.py
5293Lib/xml/parsers/expat.py
5294Lib/xml/sax/
5295Lib/xml/sax/__init__.py
5296Lib/xml/sax/_exceptions.py
5297Lib/xml/sax/expatreader.py
5298Lib/xml/sax/handler.py
5299Lib/xml/sax/saxutils.py
5300Lib/xml/sax/xmlreader.py
5301Lib/xmlrpc/
5302Lib/xmlrpc/__init__.py
5303Lib/xmlrpc/client.py
5304Lib/xmlrpc/server.py
5305Lib/zoneinfo/
5306Lib/zoneinfo/__init__.py
5307Lib/zoneinfo/_common.py
5308Lib/zoneinfo/_tzpath.py
5309Lib/zoneinfo/_zoneinfo.py
5310include/
5311include/Python.h
5312include/abstract.h
5313include/bltinmodule.h
5314include/boolobject.h
5315include/bytearrayobject.h
5316include/bytesobject.h
5317include/ceval.h
5318include/codecs.h
5319include/compile.h
5320include/complexobject.h
5321include/datetime.h
5322include/descrobject.h
5323include/dictobject.h
5324include/dynamic_annotations.h
5325include/enumobject.h
5326include/errcode.h
5327include/exports.h
5328include/fileobject.h
5329include/fileutils.h
5330include/floatobject.h
5331include/frameobject.h
5332include/genericaliasobject.h
5333include/import.h
5334include/intrcheck.h
5335include/iterobject.h
5336include/listobject.h
5337include/longobject.h
5338include/marshal.h
5339include/memoryobject.h
5340include/methodobject.h
5341include/modsupport.h
5342include/moduleobject.h
5343include/object.h
5344include/objimpl.h
5345include/opcode.h
5346include/osdefs.h
5347include/osmodule.h
5348include/patchlevel.h
5349include/py_curses.h
5350include/pybuffer.h
5351include/pycapsule.h
5352include/pyconfig.h
5353include/pydtrace.h
5354include/pyerrors.h
5355include/pyexpat.h
5356include/pyframe.h
5357include/pyhash.h
5358include/pylifecycle.h
5359include/pymacconfig.h
5360include/pymacro.h
5361include/pymath.h
5362include/pymem.h
5363include/pyport.h
5364include/pystate.h
5365include/pystrcmp.h
5366include/pystrtod.h
5367include/pythonrun.h
5368include/pythread.h
5369include/pytypedefs.h
5370include/rangeobject.h
5371include/setobject.h
5372include/sliceobject.h
5373include/structmember.h
5374include/structseq.h
5375include/sysmodule.h
5376include/token.h
5377include/traceback.h
5378include/tracemalloc.h
5379include/tupleobject.h
5380include/typeslots.h
5381include/unicodeobject.h
5382include/warnings.h
5383include/weakrefobject.h
5384include/cpython/
5385include/cpython/abstract.h
5386include/cpython/bytearrayobject.h
5387include/cpython/bytesobject.h
5388include/cpython/cellobject.h
5389include/cpython/ceval.h
5390include/cpython/classobject.h
5391include/cpython/code.h
5392include/cpython/compile.h
5393include/cpython/complexobject.h
5394include/cpython/context.h
5395include/cpython/descrobject.h
5396include/cpython/dictobject.h
5397include/cpython/fileobject.h
5398include/cpython/fileutils.h
5399include/cpython/floatobject.h
5400include/cpython/frameobject.h
5401include/cpython/funcobject.h
5402include/cpython/genobject.h
5403include/cpython/import.h
5404include/cpython/initconfig.h
5405include/cpython/listobject.h
5406include/cpython/longintrepr.h
5407include/cpython/longobject.h
5408include/cpython/methodobject.h
5409include/cpython/modsupport.h
5410include/cpython/object.h
5411include/cpython/objimpl.h
5412include/cpython/odictobject.h
5413include/cpython/picklebufobject.h
5414include/cpython/pthread_stubs.h
5415include/cpython/pyctype.h
5416include/cpython/pydebug.h
5417include/cpython/pyerrors.h
5418include/cpython/pyfpe.h
5419include/cpython/pyframe.h
5420include/cpython/pylifecycle.h
5421include/cpython/pymem.h
5422include/cpython/pystate.h
5423include/cpython/pythonrun.h
5424include/cpython/pythread.h
5425include/cpython/pytime.h
5426include/cpython/setobject.h
5427include/cpython/sysmodule.h
5428include/cpython/traceback.h
5429include/cpython/tupleobject.h
5430include/cpython/unicodeobject.h
5431include/cpython/warnings.h
5432include/cpython/weakrefobject.h
5433include/internal/
5434include/internal/pycore_abstract.h
5435include/internal/pycore_accu.h
5436include/internal/pycore_asdl.h
5437include/internal/pycore_ast.h
5438include/internal/pycore_ast_state.h
5439include/internal/pycore_atomic.h
5440include/internal/pycore_atomic_funcs.h
5441include/internal/pycore_bitutils.h
5442include/internal/pycore_blocks_output_buffer.h
5443include/internal/pycore_bytes_methods.h
5444include/internal/pycore_bytesobject.h
5445include/internal/pycore_call.h
5446include/internal/pycore_ceval.h
5447include/internal/pycore_code.h
5448include/internal/pycore_compile.h
5449include/internal/pycore_condvar.h
5450include/internal/pycore_context.h
5451include/internal/pycore_dict.h
5452include/internal/pycore_dtoa.h
5453include/internal/pycore_emscripten_signal.h
5454include/internal/pycore_exceptions.h
5455include/internal/pycore_fileutils.h
5456include/internal/pycore_floatobject.h
5457include/internal/pycore_format.h
5458include/internal/pycore_frame.h
5459include/internal/pycore_function.h
5460include/internal/pycore_gc.h
5461include/internal/pycore_genobject.h
5462include/internal/pycore_getopt.h
5463include/internal/pycore_gil.h
5464include/internal/pycore_global_objects.h
5465include/internal/pycore_global_strings.h
5466include/internal/pycore_hamt.h
5467include/internal/pycore_hashtable.h
5468include/internal/pycore_import.h
5469include/internal/pycore_initconfig.h
5470include/internal/pycore_interp.h
5471include/internal/pycore_interpreteridobject.h
5472include/internal/pycore_list.h
5473include/internal/pycore_long.h
5474include/internal/pycore_moduleobject.h
5475include/internal/pycore_namespace.h
5476include/internal/pycore_object.h
5477include/internal/pycore_opcode.h
5478include/internal/pycore_parser.h
5479include/internal/pycore_pathconfig.h
5480include/internal/pycore_pyarena.h
5481include/internal/pycore_pyerrors.h
5482include/internal/pycore_pyhash.h
5483include/internal/pycore_pylifecycle.h
5484include/internal/pycore_pymath.h
5485include/internal/pycore_pymem.h
5486include/internal/pycore_pystate.h
5487include/internal/pycore_runtime.h
5488include/internal/pycore_runtime_init.h
5489include/internal/pycore_signal.h
5490include/internal/pycore_sliceobject.h
5491include/internal/pycore_strhex.h
5492include/internal/pycore_structseq.h
5493include/internal/pycore_symtable.h
5494include/internal/pycore_sysmodule.h
5495include/internal/pycore_traceback.h
5496include/internal/pycore_tuple.h
5497include/internal/pycore_typeobject.h
5498include/internal/pycore_ucnhash.h
5499include/internal/pycore_unicodeobject.h
5500include/internal/pycore_unionobject.h
5501include/internal/pycore_warnings.h
5502libs/
5503libs/_tkinter.lib
5504libs/python3.lib
5505libs/python311.lib
5506
5507sent 40,306,691 bytes received 22,617 bytes 5,377,241.07 bytes/sec
5508total size is 40,226,876 speedup is 1.00
5509/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m ensurepip --upgrade
5510Looking in links: c:\Users\goddard\AppData\Local\Temp\tmpjijaz8zv
5511Processing c:\users\goddard\appdata\local\temp\tmpjijaz8zv\setuptools-65.5.0-py3-none-any.whl
5512Processing c:\users\goddard\appdata\local\temp\tmpjijaz8zv\pip-24.0-py3-none-any.whl
5513Installing collected packages: setuptools, pip
5514 WARNING: The scripts pip3.11.exe and pip3.exe are installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Scripts' which is not on PATH.
5515 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
5516Successfully installed pip-24.0 setuptools-65.5.0
5517/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --upgrade pip==25.2
5518Collecting pip==25.2
5519 Using cached pip-25.2-py3-none-any.whl.metadata (4.7 kB)
5520Using cached pip-25.2-py3-none-any.whl (1.8 MB)
5521Installing collected packages: pip
5522 Attempting uninstall: pip
5523 Found existing installation: pip 24.0
5524 Uninstalling pip-24.0:
5525 Successfully uninstalled pip-24.0
5526 WARNING: The scripts pip.exe, pip3.11.exe and pip3.exe are installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Scripts' which is not on PATH.
5527 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
5528Successfully installed pip-25.2
5529/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --upgrade \
5530 wheel==0.45.1 \
5531 setuptools==80.9.0 \
5532 build==1.3.0
5533Collecting wheel==0.45.1
5534 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
5535Collecting setuptools==80.9.0
5536 Using cached setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
5537Collecting build==1.3.0
5538 Using cached build-1.3.0-py3-none-any.whl.metadata (5.6 kB)
5539Collecting packaging>=19.1 (from build==1.3.0)
5540 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
5541Collecting pyproject_hooks (from build==1.3.0)
5542 Using cached pyproject_hooks-1.2.0-py3-none-any.whl.metadata (1.3 kB)
5543Collecting colorama (from build==1.3.0)
5544 Using cached colorama-0.4.6-py2.py3-none-any.whl.metadata (17 kB)
5545Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
5546Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
5547Using cached build-1.3.0-py3-none-any.whl (23 kB)
5548Using cached packaging-25.0-py3-none-any.whl (66 kB)
5549Using cached colorama-0.4.6-py2.py3-none-any.whl (25 kB)
5550Using cached pyproject_hooks-1.2.0-py3-none-any.whl (10 kB)
5551Installing collected packages: wheel, setuptools, pyproject_hooks, packaging, colorama, build
5552 WARNING: The script wheel.exe is installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Scripts' which is not on PATH.
5553 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
5554 Attempting uninstall: setuptools
5555 Found existing installation: setuptools 65.5.0
5556 Uninstalling setuptools-65.5.0:
5557 Successfully uninstalled setuptools-65.5.0
5558 WARNING: The script pyproject-build.exe is installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Scripts' which is not on PATH.
5559 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
5560
5561Successfully installed build-1.3.0 colorama-0.4.6 packaging-25.0 pyproject_hooks-1.2.0 setuptools-80.9.0 wheel-0.45.1
5562make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/Python'
5563make -C pips app-install
5564make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/pips'
5565/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe make_requirements.py
5566C:\cygwin64\home\goddard\ucsf\chimerax\prereqs\pips
5567C:\cygwin64\home\goddard\ucsf\chimerax
5568# Install Cython first so ndindex builds on Linux ARM64
5569/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --upgrade-strategy only-if-needed --no-warn-script-location Cython==3.1.4
5570Collecting Cython==3.1.4
5571 Downloading cython-3.1.4-cp311-cp311-win_amd64.whl.metadata (5.1 kB)
5572Downloading cython-3.1.4-cp311-cp311-win_amd64.whl (2.7 MB)
5573 ---------------------------------------- 2.7/2.7 MB 4.8 MB/s 0:00:00
5574Installing collected packages: Cython
5575Successfully installed Cython-3.1.4
5576/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --upgrade-strategy only-if-needed --no-warn-script-location numpy==1.26.4
5577Collecting numpy==1.26.4
5578 Using cached numpy-1.26.4-cp311-cp311-win_amd64.whl.metadata (61 kB)
5579Using cached numpy-1.26.4-cp311-cp311-win_amd64.whl (15.8 MB)
5580Installing collected packages: numpy
5581Successfully installed numpy-1.26.4
5582CFLAGS+= /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --upgrade-strategy only-if-needed --no-warn-script-location --no-build-isolation -r app_requirements.txt
5583Ignoring distro: markers 'sys_platform == "linux"' don't match your environment
5584Ignoring distro: markers 'sys_platform == "linux"' don't match your environment
5585Collecting openvr==1.26.701 (from -r app_requirements.txt (line 3))
5586 Using cached openvr-1.26.701-py3-none-any.whl.metadata (2.2 kB)
5587Collecting PyOpenGL==3.1.10 (from -r app_requirements.txt (line 4))
5588 Downloading pyopengl-3.1.10-py3-none-any.whl.metadata (3.3 kB)
5589Collecting PyOpenGL-accelerate==3.1.10 (from -r app_requirements.txt (line 5))
5590 Downloading pyopengl_accelerate-3.1.10-cp311-cp311-win_amd64.whl.metadata (4.0 kB)
5591Collecting qtconsole==5.7.0 (from -r app_requirements.txt (line 6))
5592 Downloading qtconsole-5.7.0-py3-none-any.whl.metadata (5.4 kB)
5593Collecting qtshim==1.2 (from -r app_requirements.txt (line 7))
5594 Downloading qtshim-1.2-py3-none-any.whl.metadata (629 bytes)
5595Collecting superqt==0.7.6 (from -r app_requirements.txt (line 8))
5596 Downloading superqt-0.7.6-py3-none-any.whl.metadata (5.4 kB)
5597Collecting tinyarray==1.2.5 (from -r app_requirements.txt (line 9))
5598 Downloading tinyarray-1.2.5.tar.gz (38 kB)
5599 Preparing metadata (setup.py): started
5600 Preparing metadata (setup.py): finished with status 'done'
5601Collecting webcolors==24.11.1 (from -r app_requirements.txt (line 10))
5602 Using cached webcolors-24.11.1-py3-none-any.whl.metadata (2.2 kB)
5603Collecting wheel-filename==1.4.2 (from -r app_requirements.txt (line 11))
5604 Using cached wheel_filename-1.4.2-py3-none-any.whl.metadata (5.4 kB)
5605Collecting blockdiag==3.0.0 (from -r app_requirements.txt (line 12))
5606 Using cached blockdiag-3.0.0-py3-none-any.whl.metadata (4.6 kB)
5607Collecting docutils==0.21.2 (from -r app_requirements.txt (line 13))
5608 Using cached docutils-0.21.2-py3-none-any.whl.metadata (2.8 kB)
5609Collecting Jinja2==3.1.6 (from -r app_requirements.txt (line 14))
5610 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
5611Collecting Pygments==2.18.0 (from -r app_requirements.txt (line 15))
5612 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
5613Collecting Sphinx==8.2.3 (from -r app_requirements.txt (line 16))
5614 Using cached sphinx-8.2.3-py3-none-any.whl.metadata (7.0 kB)
5615Collecting sphinxcontrib-blockdiag==3.0.0 (from -r app_requirements.txt (line 17))
5616 Using cached sphinxcontrib_blockdiag-3.0.0-py2.py3-none-any.whl.metadata (2.2 kB)
5617Collecting sphinx_autodoc_typehints==3.2.0 (from -r app_requirements.txt (line 18))
5618 Downloading sphinx_autodoc_typehints-3.2.0-py3-none-any.whl.metadata (8.0 kB)
5619Collecting pywin32==311 (from -r app_requirements.txt (line 19))
5620 Downloading pywin32-311-cp311-cp311-win_amd64.whl.metadata (10 kB)
5621Collecting WMI==1.5.1 (from -r app_requirements.txt (line 20))
5622 Using cached WMI-1.5.1-py2.py3-none-any.whl.metadata (3.6 kB)
5623Collecting comtypes==1.4.11 (from -r app_requirements.txt (line 21))
5624 Downloading comtypes-1.4.11-py3-none-any.whl.metadata (7.2 kB)
5625Collecting appdirs==1.4.4 (from -r app_requirements.txt (line 23))
5626 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
5627Collecting beautifulsoup4==4.13.5 (from -r app_requirements.txt (line 24))
5628 Downloading beautifulsoup4-4.13.5-py3-none-any.whl.metadata (3.8 kB)
5629Requirement already satisfied: colorama==0.4.6 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from -r app_requirements.txt (line 25)) (0.4.6)
5630Requirement already satisfied: Cython==3.1.4 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from -r app_requirements.txt (line 26)) (3.1.4)
5631Collecting filelock==3.19.1 (from -r app_requirements.txt (line 27))
5632 Downloading filelock-3.19.1-py3-none-any.whl.metadata (2.1 kB)
5633Collecting grako==3.16.5 (from -r app_requirements.txt (line 28))
5634 Using cached grako-3.16.5-py2.py3-none-any.whl.metadata (9.5 kB)
5635Collecting html2text==2025.4.15 (from -r app_requirements.txt (line 29))
5636 Downloading html2text-2025.4.15-py3-none-any.whl.metadata (4.1 kB)
5637Collecting ihm==2.2 (from -r app_requirements.txt (line 30))
5638 Using cached ihm-2.2-cp311-cp311-win_amd64.whl
5639Collecting imagecodecs==2024.6.1 (from -r app_requirements.txt (line 31))
5640 Using cached imagecodecs-2024.6.1-cp311-cp311-win_amd64.whl.metadata (19 kB)
5641Collecting ipykernel==6.30.1 (from -r app_requirements.txt (line 32))
5642 Downloading ipykernel-6.30.1-py3-none-any.whl.metadata (6.2 kB)
5643Collecting ipython==9.5.0 (from -r app_requirements.txt (line 33))
5644 Downloading ipython-9.5.0-py3-none-any.whl.metadata (4.4 kB)
5645Collecting jedi==0.19.2 (from -r app_requirements.txt (line 34))
5646 Downloading jedi-0.19.2-py2.py3-none-any.whl.metadata (22 kB)
5647Collecting jupyter-client==8.6.3 (from -r app_requirements.txt (line 35))
5648 Using cached jupyter_client-8.6.3-py3-none-any.whl.metadata (8.3 kB)
5649Collecting lxml==6.0.2 (from -r app_requirements.txt (line 36))
5650 Downloading lxml-6.0.2-cp311-cp311-win_amd64.whl.metadata (3.7 kB)
5651Collecting lz4==4.3.2 (from -r app_requirements.txt (line 37))
5652 Using cached lz4-4.3.2-cp311-cp311-win_amd64.whl.metadata (3.8 kB)
5653Collecting matplotlib==3.10.5 (from -r app_requirements.txt (line 38))
5654 Downloading matplotlib-3.10.5-cp311-cp311-win_amd64.whl.metadata (11 kB)
5655Collecting msgpack==1.1.1 (from -r app_requirements.txt (line 39))
5656 Downloading msgpack-1.1.1-cp311-cp311-win_amd64.whl.metadata (8.6 kB)
5657Collecting nibabel==5.2.0 (from -r app_requirements.txt (line 40))
5658 Using cached nibabel-5.2.0-py3-none-any.whl.metadata (8.8 kB)
5659Collecting netCDF4==1.6.5 (from -r app_requirements.txt (line 41))
5660 Using cached netCDF4-1.6.5-cp311-cp311-win_amd64.whl.metadata (1.8 kB)
5661Collecting networkx==3.3 (from -r app_requirements.txt (line 42))
5662 Using cached networkx-3.3-py3-none-any.whl.metadata (5.1 kB)
5663Requirement already satisfied: numpy==1.26.4 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from -r app_requirements.txt (line 43)) (1.26.4)
5664Collecting openmm==8.2.0 (from -r app_requirements.txt (line 44))
5665 Using cached OpenMM-8.2.0-cp311-cp311-win_amd64.whl.metadata (867 bytes)
5666Collecting openmm-cuda-12==8.2.0 (from -r app_requirements.txt (line 45))
5667 Using cached OpenMM_CUDA_12-8.2.0-py3-none-win_amd64.whl.metadata (343 bytes)
5668Requirement already satisfied: packaging==25.0 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from -r app_requirements.txt (line 46)) (25.0)
5669Collecting ParmEd==4.2.2 (from -r app_requirements.txt (line 47))
5670 Using cached ParmEd-4.2.2-cp311-cp311-win_amd64.whl
5671Collecting pep517==0.13.1 (from -r app_requirements.txt (line 48))
5672 Using cached pep517-0.13.1-py3-none-any.whl.metadata (4.1 kB)
5673Collecting pickleshare==0.7.5 (from -r app_requirements.txt (line 49))
5674 Using cached pickleshare-0.7.5-py2.py3-none-any.whl.metadata (1.5 kB)
5675Collecting Pillow==11.3.0 (from -r app_requirements.txt (line 50))
5676 Downloading pillow-11.3.0-cp311-cp311-win_amd64.whl.metadata (9.2 kB)
5677Collecting pkginfo==1.12.1.2 (from -r app_requirements.txt (line 51))
5678 Downloading pkginfo-1.12.1.2-py3-none-any.whl.metadata (13 kB)
5679Collecting psutil==7.0.0 (from -r app_requirements.txt (line 52))
5680 Using cached psutil-7.0.0-cp37-abi3-win_amd64.whl.metadata (23 kB)
5681Collecting pybind11==3.0.1 (from -r app_requirements.txt (line 53))
5682 Downloading pybind11-3.0.1-py3-none-any.whl.metadata (10.0 kB)
5683Collecting pycollada==0.8 (from -r app_requirements.txt (line 54))
5684 Using cached pycollada-0.8-py3-none-any.whl
5685Collecting pydicom==2.4.4 (from -r app_requirements.txt (line 55))
5686 Using cached pydicom-2.4.4-py3-none-any.whl.metadata (7.8 kB)
5687Collecting pynrrd==1.0.0 (from -r app_requirements.txt (line 56))
5688 Using cached pynrrd-1.0.0-py2.py3-none-any.whl.metadata (3.9 kB)
5689Collecting pyopenxr==1.1.4501 (from -r app_requirements.txt (line 57))
5690 Using cached pyopenxr-1.1.4501-py3-none-any.whl.metadata (3.4 kB)
5691Collecting tcia_utils==1.5.1 (from -r app_requirements.txt (line 58))
5692 Using cached tcia_utils-1.5.1-py3-none-any.whl.metadata (1.8 kB)
5693Collecting python-dateutil==2.9.0.post0 (from -r app_requirements.txt (line 59))
5694 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
5695Collecting requests==2.32.5 (from -r app_requirements.txt (line 60))
5696 Downloading requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
5697Collecting scipy==1.14.0 (from -r app_requirements.txt (line 61))
5698 Using cached scipy-1.14.0-cp311-cp311-win_amd64.whl.metadata (60 kB)
5699Collecting six==1.17.0 (from -r app_requirements.txt (line 62))
5700 Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
5701Collecting sortedcontainers==2.4.0 (from -r app_requirements.txt (line 63))
5702 Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl.metadata (10 kB)
5703Collecting tables==3.10.2 (from -r app_requirements.txt (line 64))
5704 Using cached tables-3.10.2-cp311-cp311-win_amd64.whl.metadata (2.1 kB)
5705Collecting tifffile==2025.3.13 (from -r app_requirements.txt (line 65))
5706 Using cached tifffile-2025.3.13-py3-none-any.whl.metadata (32 kB)
5707Collecting traitlets==5.14.3 (from -r app_requirements.txt (line 79))
5708 Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
5709Collecting line_profiler==5.0.0 (from -r app_requirements.txt (line 80))
5710 Downloading line_profiler-5.0.0-cp311-cp311-win_amd64.whl.metadata (31 kB)
5711Collecting markdown==3.8.2 (from -r app_requirements.txt (line 81))
5712 Downloading markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB)
5713Collecting pytest (from -r app_requirements.txt (line 82))
5714 Downloading pytest-8.4.2-py3-none-any.whl.metadata (7.7 kB)
5715Collecting pytest-cov (from -r app_requirements.txt (line 83))
5716 Downloading pytest_cov-7.0.0-py3-none-any.whl.metadata (31 kB)
5717Collecting coverage (from -r app_requirements.txt (line 84))
5718 Downloading coverage-7.10.7-cp311-cp311-win_amd64.whl.metadata (9.2 kB)
5719Collecting jupyter_core (from qtconsole==5.7.0->-r app_requirements.txt (line 6))
5720 Using cached jupyter_core-5.8.1-py3-none-any.whl.metadata (1.6 kB)
5721Collecting ipython_pygments_lexers (from qtconsole==5.7.0->-r app_requirements.txt (line 6))
5722 Downloading ipython_pygments_lexers-1.1.1-py3-none-any.whl.metadata (1.1 kB)
5723Collecting qtpy>=2.4.0 (from qtconsole==5.7.0->-r app_requirements.txt (line 6))
5724 Using cached QtPy-2.4.3-py3-none-any.whl.metadata (12 kB)
5725Collecting typing-extensions>=4.5.0 (from superqt==0.7.6->-r app_requirements.txt (line 8))
5726 Downloading typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
5727Requirement already satisfied: setuptools in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from blockdiag==3.0.0->-r app_requirements.txt (line 12)) (80.9.0)
5728Collecting funcparserlib>=1.0.0a0 (from blockdiag==3.0.0->-r app_requirements.txt (line 12))
5729 Using cached funcparserlib-2.0.0a0-py3-none-any.whl.metadata (6.6 kB)
5730Collecting MarkupSafe>=2.0 (from Jinja2==3.1.6->-r app_requirements.txt (line 14))
5731 Using cached MarkupSafe-3.0.2-cp311-cp311-win_amd64.whl.metadata (4.1 kB)
5732Collecting sphinxcontrib-applehelp>=1.0.7 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5733 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
5734Collecting sphinxcontrib-devhelp>=1.0.6 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5735 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
5736Collecting sphinxcontrib-htmlhelp>=2.0.6 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5737 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB)
5738Collecting sphinxcontrib-jsmath>=1.0.1 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5739 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
5740Collecting sphinxcontrib-qthelp>=1.0.6 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5741 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
5742Collecting sphinxcontrib-serializinghtml>=1.1.9 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5743 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB)
5744Collecting snowballstemmer>=2.2 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5745 Using cached snowballstemmer-3.0.1-py3-none-any.whl.metadata (7.9 kB)
5746Collecting babel>=2.13 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5747 Using cached babel-2.17.0-py3-none-any.whl.metadata (2.0 kB)
5748Collecting alabaster>=0.7.14 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5749 Using cached alabaster-1.0.0-py3-none-any.whl.metadata (2.8 kB)
5750Collecting imagesize>=1.3 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5751 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
5752Collecting roman-numerals-py>=1.0.0 (from Sphinx==8.2.3->-r app_requirements.txt (line 16))
5753 Using cached roman_numerals_py-3.1.0-py3-none-any.whl.metadata (3.6 kB)
5754Collecting soupsieve>1.2 (from beautifulsoup4==4.13.5->-r app_requirements.txt (line 24))
5755 Downloading soupsieve-2.8-py3-none-any.whl.metadata (4.6 kB)
5756Collecting comm>=0.1.1 (from ipykernel==6.30.1->-r app_requirements.txt (line 32))
5757 Downloading comm-0.2.3-py3-none-any.whl.metadata (3.7 kB)
5758Collecting debugpy>=1.6.5 (from ipykernel==6.30.1->-r app_requirements.txt (line 32))
5759 Downloading debugpy-1.8.17-cp311-cp311-win_amd64.whl.metadata (1.5 kB)
5760Collecting matplotlib-inline>=0.1 (from ipykernel==6.30.1->-r app_requirements.txt (line 32))
5761 Using cached matplotlib_inline-0.1.7-py3-none-any.whl.metadata (3.9 kB)
5762Collecting nest-asyncio>=1.4 (from ipykernel==6.30.1->-r app_requirements.txt (line 32))
5763 Using cached nest_asyncio-1.6.0-py3-none-any.whl.metadata (2.8 kB)
5764Collecting pyzmq>=25 (from ipykernel==6.30.1->-r app_requirements.txt (line 32))
5765 Downloading pyzmq-27.1.0-cp311-cp311-win_amd64.whl.metadata (6.0 kB)
5766Collecting tornado>=6.2 (from ipykernel==6.30.1->-r app_requirements.txt (line 32))
5767 Downloading tornado-6.5.2-cp39-abi3-win_amd64.whl.metadata (2.9 kB)
5768Collecting decorator (from ipython==9.5.0->-r app_requirements.txt (line 33))
5769 Using cached decorator-5.2.1-py3-none-any.whl.metadata (3.9 kB)
5770Collecting prompt_toolkit<3.1.0,>=3.0.41 (from ipython==9.5.0->-r app_requirements.txt (line 33))
5771 Downloading prompt_toolkit-3.0.52-py3-none-any.whl.metadata (6.4 kB)
5772Collecting stack_data (from ipython==9.5.0->-r app_requirements.txt (line 33))
5773 Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
5774Collecting parso<0.9.0,>=0.8.4 (from jedi==0.19.2->-r app_requirements.txt (line 34))
5775 Downloading parso-0.8.5-py2.py3-none-any.whl.metadata (8.3 kB)
5776Collecting contourpy>=1.0.1 (from matplotlib==3.10.5->-r app_requirements.txt (line 38))
5777 Downloading contourpy-1.3.3-cp311-cp311-win_amd64.whl.metadata (5.5 kB)
5778Collecting cycler>=0.10 (from matplotlib==3.10.5->-r app_requirements.txt (line 38))
5779 Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
5780Collecting fonttools>=4.22.0 (from matplotlib==3.10.5->-r app_requirements.txt (line 38))
5781 Downloading fonttools-4.60.0-cp311-cp311-win_amd64.whl.metadata (113 kB)
5782Collecting kiwisolver>=1.3.1 (from matplotlib==3.10.5->-r app_requirements.txt (line 38))
5783 Downloading kiwisolver-1.4.9-cp311-cp311-win_amd64.whl.metadata (6.4 kB)
5784Collecting pyparsing>=2.3.1 (from matplotlib==3.10.5->-r app_requirements.txt (line 38))
5785 Downloading pyparsing-3.2.5-py3-none-any.whl.metadata (5.0 kB)
5786Collecting cftime (from netCDF4==1.6.5->-r app_requirements.txt (line 41))
5787 Using cached cftime-1.6.4.post1-cp311-cp311-win_amd64.whl.metadata (8.9 kB)
5788Collecting certifi (from netCDF4==1.6.5->-r app_requirements.txt (line 41))
5789 Downloading certifi-2025.8.3-py3-none-any.whl.metadata (2.4 kB)
5790Collecting nvidia-cuda-runtime-cu12 (from openmm-cuda-12==8.2.0->-r app_requirements.txt (line 45))
5791 Using cached nvidia_cuda_runtime_cu12-12.9.79-py3-none-win_amd64.whl.metadata (1.7 kB)
5792Collecting nvidia-cuda-nvcc-cu12 (from openmm-cuda-12==8.2.0->-r app_requirements.txt (line 45))
5793 Using cached nvidia_cuda_nvcc_cu12-12.9.86-py3-none-win_amd64.whl.metadata (1.7 kB)
5794Collecting nvidia-cuda-nvrtc-cu12 (from openmm-cuda-12==8.2.0->-r app_requirements.txt (line 45))
5795 Using cached nvidia_cuda_nvrtc_cu12-12.9.86-py3-none-win_amd64.whl.metadata (1.7 kB)
5796Collecting nvidia-cuda-cupti-cu12 (from openmm-cuda-12==8.2.0->-r app_requirements.txt (line 45))
5797 Using cached nvidia_cuda_cupti_cu12-12.9.79-py3-none-win_amd64.whl.metadata (1.8 kB)
5798Collecting nvidia-cufft-cu12 (from openmm-cuda-12==8.2.0->-r app_requirements.txt (line 45))
5799 Using cached nvidia_cufft_cu12-11.4.1.4-py3-none-win_amd64.whl.metadata (1.8 kB)
5800Collecting nptyping (from pynrrd==1.0.0->-r app_requirements.txt (line 56))
5801 Using cached nptyping-2.5.0-py3-none-any.whl.metadata (7.6 kB)
5802Collecting glfw (from pyopenxr==1.1.4501->-r app_requirements.txt (line 57))
5803 Downloading glfw-2.10.0-py2.py27.py3.py30.py31.py32.py33.py34.py35.py36.py37.py38.p39.p310.p311.p312.p313-none-win_amd64.whl.metadata (5.4 kB)
5804Collecting ipywidgets (from tcia_utils==1.5.1->-r app_requirements.txt (line 58))
5805 Using cached ipywidgets-8.1.7-py3-none-any.whl.metadata (2.4 kB)
5806Collecting pandas (from tcia_utils==1.5.1->-r app_requirements.txt (line 58))
5807 Downloading pandas-2.3.2-cp311-cp311-win_amd64.whl.metadata (19 kB)
5808Collecting charset_normalizer<4,>=2 (from requests==2.32.5->-r app_requirements.txt (line 60))
5809 Downloading charset_normalizer-3.4.3-cp311-cp311-win_amd64.whl.metadata (37 kB)
5810Collecting idna<4,>=2.5 (from requests==2.32.5->-r app_requirements.txt (line 60))
5811 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
5812Collecting urllib3<3,>=1.21.1 (from requests==2.32.5->-r app_requirements.txt (line 60))
5813 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
5814Collecting numexpr>=2.6.2 (from tables==3.10.2->-r app_requirements.txt (line 64))
5815 Downloading numexpr-2.12.1-cp311-cp311-win_amd64.whl.metadata (9.3 kB)
5816Collecting py-cpuinfo (from tables==3.10.2->-r app_requirements.txt (line 64))
5817 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
5818Collecting blosc2>=2.3.0 (from tables==3.10.2->-r app_requirements.txt (line 64))
5819 Downloading blosc2-3.8.0-cp311-cp311-win_amd64.whl.metadata (7.1 kB)
5820Collecting wcwidth (from prompt_toolkit<3.1.0,>=3.0.41->ipython==9.5.0->-r app_requirements.txt (line 33))
5821 Downloading wcwidth-0.2.14-py2.py3-none-any.whl.metadata (15 kB)
5822Collecting iniconfig>=1 (from pytest->-r app_requirements.txt (line 82))
5823 Using cached iniconfig-2.1.0-py3-none-any.whl.metadata (2.7 kB)
5824Collecting pluggy<2,>=1.5 (from pytest->-r app_requirements.txt (line 82))
5825 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
5826Collecting ndindex (from blosc2>=2.3.0->tables==3.10.2->-r app_requirements.txt (line 64))
5827 Using cached ndindex-1.10.0-cp311-cp311-win_amd64.whl.metadata (3.7 kB)
5828Collecting platformdirs (from blosc2>=2.3.0->tables==3.10.2->-r app_requirements.txt (line 64))
5829 Downloading platformdirs-4.4.0-py3-none-any.whl.metadata (12 kB)
5830Collecting widgetsnbextension~=4.0.14 (from ipywidgets->tcia_utils==1.5.1->-r app_requirements.txt (line 58))
5831 Using cached widgetsnbextension-4.0.14-py3-none-any.whl.metadata (1.6 kB)
5832Collecting jupyterlab_widgets~=3.0.15 (from ipywidgets->tcia_utils==1.5.1->-r app_requirements.txt (line 58))
5833 Using cached jupyterlab_widgets-3.0.15-py3-none-any.whl.metadata (20 kB)
5834Collecting nvidia-nvjitlink-cu12 (from nvidia-cufft-cu12->openmm-cuda-12==8.2.0->-r app_requirements.txt (line 45))
5835 Using cached nvidia_nvjitlink_cu12-12.9.86-py3-none-win_amd64.whl.metadata (1.7 kB)
5836Collecting pytz>=2020.1 (from pandas->tcia_utils==1.5.1->-r app_requirements.txt (line 58))
5837 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
5838Collecting tzdata>=2022.7 (from pandas->tcia_utils==1.5.1->-r app_requirements.txt (line 58))
5839 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
5840Collecting executing>=1.2.0 (from stack_data->ipython==9.5.0->-r app_requirements.txt (line 33))
5841 Downloading executing-2.2.1-py2.py3-none-any.whl.metadata (8.9 kB)
5842Collecting asttokens>=2.1.0 (from stack_data->ipython==9.5.0->-r app_requirements.txt (line 33))
5843 Using cached asttokens-3.0.0-py3-none-any.whl.metadata (4.7 kB)
5844Collecting pure-eval (from stack_data->ipython==9.5.0->-r app_requirements.txt (line 33))
5845 Using cached pure_eval-0.2.3-py3-none-any.whl.metadata (6.3 kB)
5846Using cached openvr-1.26.701-py3-none-any.whl (1.1 MB)
5847Downloading pyopengl-3.1.10-py3-none-any.whl (3.2 MB)
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5849Downloading pyopengl_accelerate-3.1.10-cp311-cp311-win_amd64.whl (390 kB)
5850Downloading qtconsole-5.7.0-py3-none-any.whl (125 kB)
5851Downloading qtshim-1.2-py3-none-any.whl (6.3 kB)
5852Downloading superqt-0.7.6-py3-none-any.whl (100 kB)
5853Using cached webcolors-24.11.1-py3-none-any.whl (14 kB)
5854Using cached wheel_filename-1.4.2-py3-none-any.whl (6.2 kB)
5855Using cached blockdiag-3.0.0-py3-none-any.whl (2.7 MB)
5856Using cached docutils-0.21.2-py3-none-any.whl (587 kB)
5857Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
5858Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
5859Using cached sphinx-8.2.3-py3-none-any.whl (3.6 MB)
5860Using cached sphinxcontrib_blockdiag-3.0.0-py2.py3-none-any.whl (6.8 kB)
5861Downloading sphinx_autodoc_typehints-3.2.0-py3-none-any.whl (20 kB)
5862Downloading pywin32-311-cp311-cp311-win_amd64.whl (9.5 MB)
5863 ---------------------------------------- 9.5/9.5 MB 4.5 MB/s 0:00:02
5864Using cached WMI-1.5.1-py2.py3-none-any.whl (28 kB)
5865Downloading comtypes-1.4.11-py3-none-any.whl (246 kB)
5866Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
5867Downloading beautifulsoup4-4.13.5-py3-none-any.whl (105 kB)
5868Downloading filelock-3.19.1-py3-none-any.whl (15 kB)
5869Using cached grako-3.16.5-py2.py3-none-any.whl (76 kB)
5870Downloading html2text-2025.4.15-py3-none-any.whl (34 kB)
5871Using cached imagecodecs-2024.6.1-cp311-cp311-win_amd64.whl (25.7 MB)
5872Downloading ipykernel-6.30.1-py3-none-any.whl (117 kB)
5873Downloading ipython-9.5.0-py3-none-any.whl (612 kB)
5874 ---------------------------------------- 612.4/612.4 kB 5.6 MB/s 0:00:00
5875Downloading jedi-0.19.2-py2.py3-none-any.whl (1.6 MB)
5876 ---------------------------------------- 1.6/1.6 MB 5.2 MB/s 0:00:00
5877Using cached jupyter_client-8.6.3-py3-none-any.whl (106 kB)
5878Downloading lxml-6.0.2-cp311-cp311-win_amd64.whl (4.0 MB)
5879 ---------------------------------------- 4.0/4.0 MB 4.9 MB/s 0:00:00
5880Using cached lz4-4.3.2-cp311-cp311-win_amd64.whl (99 kB)
5881Downloading matplotlib-3.10.5-cp311-cp311-win_amd64.whl (8.1 MB)
5882 ---------------------------------------- 8.1/8.1 MB 5.3 MB/s 0:00:01
5883Downloading msgpack-1.1.1-cp311-cp311-win_amd64.whl (72 kB)
5884Using cached nibabel-5.2.0-py3-none-any.whl (3.3 MB)
5885Using cached netCDF4-1.6.5-cp311-cp311-win_amd64.whl (6.6 MB)
5886Using cached networkx-3.3-py3-none-any.whl (1.7 MB)
5887Using cached OpenMM-8.2.0-cp311-cp311-win_amd64.whl (11.3 MB)
5888Using cached OpenMM_CUDA_12-8.2.0-py3-none-win_amd64.whl (1.8 MB)
5889Using cached pep517-0.13.1-py3-none-any.whl (19 kB)
5890Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
5891Downloading pillow-11.3.0-cp311-cp311-win_amd64.whl (7.0 MB)
5892 ---------------------------------------- 7.0/7.0 MB 4.8 MB/s 0:00:01
5893Downloading pkginfo-1.12.1.2-py3-none-any.whl (32 kB)
5894Using cached psutil-7.0.0-cp37-abi3-win_amd64.whl (244 kB)
5895Downloading pybind11-3.0.1-py3-none-any.whl (293 kB)
5896Using cached pydicom-2.4.4-py3-none-any.whl (1.8 MB)
5897Using cached pynrrd-1.0.0-py2.py3-none-any.whl (19 kB)
5898Using cached pyopenxr-1.1.4501-py3-none-any.whl (3.8 MB)
5899Using cached tcia_utils-1.5.1-py3-none-any.whl (22 kB)
5900Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
5901Downloading requests-2.32.5-py3-none-any.whl (64 kB)
5902Using cached scipy-1.14.0-cp311-cp311-win_amd64.whl (44.7 MB)
5903Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
5904Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB)
5905Using cached tables-3.10.2-cp311-cp311-win_amd64.whl (6.4 MB)
5906Using cached tifffile-2025.3.13-py3-none-any.whl (226 kB)
5907Using cached traitlets-5.14.3-py3-none-any.whl (85 kB)
5908Downloading line_profiler-5.0.0-cp311-cp311-win_amd64.whl (462 kB)
5909Downloading markdown-3.8.2-py3-none-any.whl (106 kB)
5910Downloading charset_normalizer-3.4.3-cp311-cp311-win_amd64.whl (107 kB)
5911Using cached idna-3.10-py3-none-any.whl (70 kB)
5912Downloading parso-0.8.5-py2.py3-none-any.whl (106 kB)
5913Downloading prompt_toolkit-3.0.52-py3-none-any.whl (391 kB)
5914Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
5915Downloading pytest-8.4.2-py3-none-any.whl (365 kB)
5916Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
5917Downloading pytest_cov-7.0.0-py3-none-any.whl (22 kB)
5918Downloading coverage-7.10.7-cp311-cp311-win_amd64.whl (221 kB)
5919Using cached alabaster-1.0.0-py3-none-any.whl (13 kB)
5920Using cached babel-2.17.0-py3-none-any.whl (10.2 MB)
5921Downloading blosc2-3.8.0-cp311-cp311-win_amd64.whl (2.3 MB)
5922 ---------------------------------------- 2.3/2.3 MB 4.4 MB/s 0:00:00
5923Downloading certifi-2025.8.3-py3-none-any.whl (161 kB)
5924Downloading comm-0.2.3-py3-none-any.whl (7.3 kB)
5925Downloading contourpy-1.3.3-cp311-cp311-win_amd64.whl (225 kB)
5926Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
5927Downloading debugpy-1.8.17-cp311-cp311-win_amd64.whl (5.2 MB)
5928 ---------------------------------------- 5.2/5.2 MB 4.2 MB/s 0:00:01
5929Downloading fonttools-4.60.0-cp311-cp311-win_amd64.whl (2.3 MB)
5930 ---------------------------------------- 2.3/2.3 MB 5.6 MB/s 0:00:00
5931Using cached funcparserlib-2.0.0a0-py3-none-any.whl (16 kB)
5932Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
5933Using cached iniconfig-2.1.0-py3-none-any.whl (6.0 kB)
5934Using cached jupyter_core-5.8.1-py3-none-any.whl (28 kB)
5935Downloading kiwisolver-1.4.9-cp311-cp311-win_amd64.whl (73 kB)
5936Using cached MarkupSafe-3.0.2-cp311-cp311-win_amd64.whl (15 kB)
5937Using cached matplotlib_inline-0.1.7-py3-none-any.whl (9.9 kB)
5938Using cached nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB)
5939Downloading numexpr-2.12.1-cp311-cp311-win_amd64.whl (151 kB)
5940Downloading platformdirs-4.4.0-py3-none-any.whl (18 kB)
5941Downloading pyparsing-3.2.5-py3-none-any.whl (113 kB)
5942Downloading pyzmq-27.1.0-cp311-cp311-win_amd64.whl (633 kB)
5943 ---------------------------------------- 633.4/633.4 kB 3.9 MB/s 0:00:00
5944Using cached QtPy-2.4.3-py3-none-any.whl (95 kB)
5945Using cached roman_numerals_py-3.1.0-py3-none-any.whl (7.7 kB)
5946Using cached snowballstemmer-3.0.1-py3-none-any.whl (103 kB)
5947Downloading soupsieve-2.8-py3-none-any.whl (36 kB)
5948Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB)
5949Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB)
5950Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB)
5951Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
5952Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB)
5953Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB)
5954Downloading tornado-6.5.2-cp39-abi3-win_amd64.whl (445 kB)
5955Downloading typing_extensions-4.15.0-py3-none-any.whl (44 kB)
5956Using cached cftime-1.6.4.post1-cp311-cp311-win_amd64.whl (190 kB)
5957Using cached decorator-5.2.1-py3-none-any.whl (9.2 kB)
5958Downloading glfw-2.10.0-py2.py27.py3.py30.py31.py32.py33.py34.py35.py36.py37.py38.p39.p310.p311.p312.p313-none-win_amd64.whl (559 kB)
5959 ---------------------------------------- 559.5/559.5 kB 4.8 MB/s 0:00:00
5960Downloading ipython_pygments_lexers-1.1.1-py3-none-any.whl (8.1 kB)
5961Using cached ipywidgets-8.1.7-py3-none-any.whl (139 kB)
5962Using cached jupyterlab_widgets-3.0.15-py3-none-any.whl (216 kB)
5963Using cached widgetsnbextension-4.0.14-py3-none-any.whl (2.2 MB)
5964Using cached ndindex-1.10.0-cp311-cp311-win_amd64.whl (156 kB)
5965Using cached nptyping-2.5.0-py3-none-any.whl (37 kB)
5966Using cached nvidia_cuda_cupti_cu12-12.9.79-py3-none-win_amd64.whl (7.7 MB)
5967Using cached nvidia_cuda_nvcc_cu12-12.9.86-py3-none-win_amd64.whl (34.7 MB)
5968Using cached nvidia_cuda_nvrtc_cu12-12.9.86-py3-none-win_amd64.whl (76.4 MB)
5969Using cached nvidia_cuda_runtime_cu12-12.9.79-py3-none-win_amd64.whl (3.6 MB)
5970Using cached nvidia_cufft_cu12-11.4.1.4-py3-none-win_amd64.whl (200.1 MB)
5971Using cached nvidia_nvjitlink_cu12-12.9.86-py3-none-win_amd64.whl (35.6 MB)
5972Downloading pandas-2.3.2-cp311-cp311-win_amd64.whl (11.3 MB)
5973 ---------------------------------------- 11.3/11.3 MB 5.0 MB/s 0:00:02
5974Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
5975Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
5976Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
5977Using cached stack_data-0.6.3-py3-none-any.whl (24 kB)
5978Using cached asttokens-3.0.0-py3-none-any.whl (26 kB)
5979Downloading executing-2.2.1-py2.py3-none-any.whl (28 kB)
5980Using cached pure_eval-0.2.3-py3-none-any.whl (11 kB)
5981Downloading wcwidth-0.2.14-py2.py3-none-any.whl (37 kB)
5982Building wheels for collected packages: tinyarray
5983 DEPRECATION: Building 'tinyarray' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'tinyarray'. Discussion can be found at https://github.com/pypa/pip/issues/6334
5984 Building wheel for tinyarray (setup.py): started
5985 Building wheel for tinyarray (setup.py): finished with status 'done'
5986 Created wheel for tinyarray: filename=tinyarray-1.2.5-cp311-cp311-win_amd64.whl size=50161 sha256=cedd180a44b4b6904040feff0da4c18a169ef77a6520307d7716f410bafee418
5987 Stored in directory: c:\users\goddard\appdata\local\pip\cache\wheels\22\e7\79\c63396ff824fd6c4d9aa7c6dddb2dea9a30792813f7a65f0a2
5988Successfully built tinyarray
5989Installing collected packages: tinyarray, sortedcontainers, qtshim, pywin32, pytz, PyOpenGL-accelerate, PyOpenGL, py-cpuinfo, pure-eval, pickleshare, grako, glfw, appdirs, WMI, widgetsnbextension, wheel-filename, webcolors, wcwidth, urllib3, tzdata, typing-extensions, traitlets, tornado, tifffile, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, snowballstemmer, six, scipy, roman-numerals-py, qtpy, pyzmq, pyparsing, pyopenxr, Pygments, pydicom, pybind11, psutil, pluggy, platformdirs, pkginfo, Pillow, pep517, parso, ParmEd, openvr, openmm, nvidia-nvjitlink-cu12, nvidia-cuda-runtime-cu12, nvidia-cuda-nvrtc-cu12, nvidia-cuda-nvcc-cu12, nvidia-cuda-cupti-cu12, numexpr, nptyping, nibabel, networkx, nest-asyncio, ndindex, msgpack, MarkupSafe, markdown, lz4, lxml, line_profiler, kiwisolver, jupyterlab_widgets, iniconfig, imagesize, imagecodecs, idna, html2text, funcparserlib, fonttools, filelock, executing, docutils, decorator, debugpy, cycler, coverage, contourpy, comtypes, comm, charset_normalizer, cftime, certifi, babel, asttokens, alabaster, superqt, stack_data, requests, python-dateutil, pytest, pynrrd, prompt_toolkit, nvidia-cufft-cu12, netCDF4, matplotlib-inline, jupyter_core, Jinja2, jedi, ipython_pygments_lexers, ihm, blockdiag, beautifulsoup4, Sphinx, pytest-cov, pycollada, pandas, openmm-cuda-12, matplotlib, jupyter-client, ipython, blosc2, tables, sphinxcontrib-blockdiag, sphinx_autodoc_typehints, ipywidgets, ipykernel, tcia_utils, qtconsole
5990
5991Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.2 ParmEd-4.2.2 Pillow-11.3.0 PyOpenGL-3.1.10 PyOpenGL-accelerate-3.1.10 Pygments-2.18.0 Sphinx-8.2.3 WMI-1.5.1 alabaster-1.0.0 appdirs-1.4.4 asttokens-3.0.0 babel-2.17.0 beautifulsoup4-4.13.5 blockdiag-3.0.0 blosc2-3.8.0 certifi-2025.8.3 cftime-1.6.4.post1 charset_normalizer-3.4.3 comm-0.2.3 comtypes-1.4.11 contourpy-1.3.3 coverage-7.10.7 cycler-0.12.1 debugpy-1.8.17 decorator-5.2.1 docutils-0.21.2 executing-2.2.1 filelock-3.19.1 fonttools-4.60.0 funcparserlib-2.0.0a0 glfw-2.10.0 grako-3.16.5 html2text-2025.4.15 idna-3.10 ihm-2.2 imagecodecs-2024.6.1 imagesize-1.4.1 iniconfig-2.1.0 ipykernel-6.30.1 ipython-9.5.0 ipython_pygments_lexers-1.1.1 ipywidgets-8.1.7 jedi-0.19.2 jupyter-client-8.6.3 jupyter_core-5.8.1 jupyterlab_widgets-3.0.15 kiwisolver-1.4.9 line_profiler-5.0.0 lxml-6.0.2 lz4-4.3.2 markdown-3.8.2 matplotlib-3.10.5 matplotlib-inline-0.1.7 msgpack-1.1.1 ndindex-1.10.0 nest-asyncio-1.6.0 netCDF4-1.6.5 networkx-3.3 nibabel-5.2.0 nptyping-2.5.0 numexpr-2.12.1 nvidia-cuda-cupti-cu12-12.9.79 nvidia-cuda-nvcc-cu12-12.9.86 nvidia-cuda-nvrtc-cu12-12.9.86 nvidia-cuda-runtime-cu12-12.9.79 nvidia-cufft-cu12-11.4.1.4 nvidia-nvjitlink-cu12-12.9.86 openmm-8.2.0 openmm-cuda-12-8.2.0 openvr-1.26.701 pandas-2.3.2 parso-0.8.5 pep517-0.13.1 pickleshare-0.7.5 pkginfo-1.12.1.2 platformdirs-4.4.0 pluggy-1.6.0 prompt_toolkit-3.0.52 psutil-7.0.0 pure-eval-0.2.3 py-cpuinfo-9.0.0 pybind11-3.0.1 pycollada-0.8 pydicom-2.4.4 pynrrd-1.0.0 pyopenxr-1.1.4501 pyparsing-3.2.5 pytest-8.4.2 pytest-cov-7.0.0 python-dateutil-2.9.0.post0 pytz-2025.2 pywin32-311 pyzmq-27.1.0 qtconsole-5.7.0 qtpy-2.4.3 qtshim-1.2 requests-2.32.5 roman-numerals-py-3.1.0 scipy-1.14.0 six-1.17.0 snowballstemmer-3.0.1 sortedcontainers-2.4.0 soupsieve-2.8 sphinx_autodoc_typehints-3.2.0 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-blockdiag-3.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 stack_data-0.6.3 superqt-0.7.6 tables-3.10.2 tcia_utils-1.5.1 tifffile-2025.3.13 tinyarray-1.2.5 tornado-6.5.2 traitlets-5.14.3 typing-extensions-4.15.0 tzdata-2025.2 urllib3-2.5.0 wcwidth-0.2.14 webcolors-24.11.1 wheel-filename-1.4.2 widgetsnbextension-4.0.14
5992/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --upgrade-strategy only-if-needed --no-warn-script-location cxservices-1.2.3-py3-none-any.whl
5993Processing c:\cygwin64\home\goddard\ucsf\chimerax\prereqs\pips\cxservices-1.2.3-py3-none-any.whl
5994Requirement already satisfied: urllib3>=1.15 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from cxservices==1.2.3) (2.5.0)
5995Requirement already satisfied: six>=1.10 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from cxservices==1.2.3) (1.17.0)
5996Requirement already satisfied: certifi in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from cxservices==1.2.3) (2025.8.3)
5997Requirement already satisfied: python-dateutil in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from cxservices==1.2.3) (2.9.0.post0)
5998Installing collected packages: cxservices
5999Successfully installed cxservices-1.2.3
6000for p in tcia_utils.patch tcia_utils_metadata.patch grako.patch openmm_metadata_cygwin.patch; do \
6001 patch --ignore-whitespace -d /home/goddard/ucsf/chimerax/ChimeraX.app/bin/Lib/site-packages -N -p0 < $p ; \
6002done
6003patching file tcia_utils/datacite.py
6004patching file tcia_utils/nbia.py
6005patching file tcia_utils/pathdb.py
6006patching file tcia_utils-1.5.1.dist-info/METADATA
6007patching file grako/grammars.py
6008patching file grako/util.py
6009patching file OpenMM_CUDA_12-8.2.0.dist-info/METADATA
6010# tcia_utils (a DICOM dependency) pulls in Pandas, but it is patched
6011# so that pandas is not needed. When those patches are upstreamed
6012# and pandas is optional this line can be removed
6013/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip uninstall -y pandas
6014Found existing installation: pandas 2.3.2
6015Uninstalling pandas-2.3.2:
6016 Successfully uninstalled pandas-2.3.2
6017# openmm-cuda-12 brings in ~600MB of CUDA dependencies it does not use
6018/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip uninstall -y nvidia-cuda-runtime-cu12 nvidia-cuda-nvcc-cu12 nvidia-cuda-nvrtc-cu12 nvidia-cuda-cupti-cu12 nvidia-cufft-cu12
6019Found existing installation: nvidia-cuda-runtime-cu12 12.9.79
6020Uninstalling nvidia-cuda-runtime-cu12-12.9.79:
6021 Successfully uninstalled nvidia-cuda-runtime-cu12-12.9.79
6022Found existing installation: nvidia-cuda-nvcc-cu12 12.9.86
6023Uninstalling nvidia-cuda-nvcc-cu12-12.9.86:
6024 Successfully uninstalled nvidia-cuda-nvcc-cu12-12.9.86
6025Found existing installation: nvidia-cuda-nvrtc-cu12 12.9.86
6026Uninstalling nvidia-cuda-nvrtc-cu12-12.9.86:
6027 Successfully uninstalled nvidia-cuda-nvrtc-cu12-12.9.86
6028Found existing installation: nvidia-cuda-cupti-cu12 12.9.79
6029Uninstalling nvidia-cuda-cupti-cu12-12.9.79:
6030 Successfully uninstalled nvidia-cuda-cupti-cu12-12.9.79
6031Found existing installation: nvidia-cufft-cu12 11.4.1.4
6032Uninstalling nvidia-cufft-cu12-11.4.1.4:
6033 Successfully uninstalled nvidia-cufft-cu12-11.4.1.4
6034make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/pips'
6035make -C PyQt app-install
6036make[3]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
6037make -f Makefile.wheel.qt6 BASE_VERSION=6.9 PYQT_MINOR_VERSION=1 QT_MINOR_VERSION=2 PYQTWE_MINOR_VERSION=0 PYQT_LICENSE=gpl app-install
6038make[4]: Entering directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
6039/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install -U PyQt6-sip==13.10.2 PyQt6==6.9.1 PyQt6-Qt6==6.9.2 PyQt6_WebEngine==6.9.0 PyQt6-WebEngine-Qt6==6.9.2
6040Collecting PyQt6-sip==13.10.2
6041 Using cached pyqt6_sip-13.10.2-cp311-cp311-win_amd64.whl.metadata (515 bytes)
6042Collecting PyQt6==6.9.1
6043 Using cached pyqt6-6.9.1-cp39-abi3-win_amd64.whl.metadata (2.2 kB)
6044Collecting PyQt6-Qt6==6.9.2
6045 Using cached pyqt6_qt6-6.9.2-py3-none-win_amd64.whl.metadata (551 bytes)
6046Collecting PyQt6_WebEngine==6.9.0
6047 Using cached PyQt6_WebEngine-6.9.0-cp39-abi3-win_amd64.whl.metadata (1.9 kB)
6048Collecting PyQt6-WebEngine-Qt6==6.9.2
6049 Using cached pyqt6_webengine_qt6-6.9.2-py3-none-win_amd64.whl.metadata (591 bytes)
6050Using cached pyqt6_sip-13.10.2-cp311-cp311-win_amd64.whl (53 kB)
6051Using cached pyqt6-6.9.1-cp39-abi3-win_amd64.whl (25.7 MB)
6052Using cached pyqt6_qt6-6.9.2-py3-none-win_amd64.whl (74.1 MB)
6053Using cached PyQt6_WebEngine-6.9.0-cp39-abi3-win_amd64.whl (237 kB)
6054Using cached pyqt6_webengine_qt6-6.9.2-py3-none-win_amd64.whl (127.0 MB)
6055Installing collected packages: PyQt6-WebEngine-Qt6, PyQt6-Qt6, PyQt6-sip, PyQt6, PyQt6_WebEngine
6056 WARNING: The scripts pylupdate6.exe and pyuic6.exe are installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Scripts' which is not on PATH.
6057 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
6058
6059Successfully installed PyQt6-6.9.1 PyQt6-Qt6-6.9.2 PyQt6-WebEngine-Qt6-6.9.2 PyQt6-sip-13.10.2 PyQt6_WebEngine-6.9.0
6060make[4]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
6061make[3]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs/PyQt'
6062make[2]: Leaving directory '/home/goddard/ucsf/chimerax/prereqs'
6063make build-app-dirs
6064make[2]: Entering directory '/home/goddard/ucsf/chimerax'
6065mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app /home/goddard/ucsf/chimerax/ChimeraX.app/bin /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share
6066mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/Lib/site-packages
6067make[2]: Leaving directory '/home/goddard/ucsf/chimerax'
6068make -C src install
6069make[2]: Entering directory '/home/goddard/ucsf/chimerax/src'
6070make -C bundles install
6071make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles'
6072/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I Make_dependencies.py
6073make -C bundle_builder build
6074make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
6075PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m build --no-isolation --wheel
6076* Getting build dependencies for wheel...
6077running egg_info
6078creating ChimeraX_BundleBuilder.egg-info
6079writing ChimeraX_BundleBuilder.egg-info\PKG-INFO
6080writing dependency_links to ChimeraX_BundleBuilder.egg-info\dependency_links.txt
6081writing entry points to ChimeraX_BundleBuilder.egg-info\entry_points.txt
6082writing top-level names to ChimeraX_BundleBuilder.egg-info\top_level.txt
6083writing manifest file 'ChimeraX_BundleBuilder.egg-info\SOURCES.txt'
6084reading manifest file 'ChimeraX_BundleBuilder.egg-info\SOURCES.txt'
6085writing manifest file 'ChimeraX_BundleBuilder.egg-info\SOURCES.txt'
6086* Building wheel...
6087running bdist_wheel
6088running build
6089running build_py
6090creating build\lib\chimerax\bundle_builder
6091copying src\bundle_builder.py -> build\lib\chimerax\bundle_builder
6092copying src\bundle_builder_toml.py -> build\lib\chimerax\bundle_builder
6093copying src\classifiers.py -> build\lib\chimerax\bundle_builder
6094copying src\cx_pep517.py -> build\lib\chimerax\bundle_builder
6095copying src\metadata_templates.py -> build\lib\chimerax\bundle_builder
6096copying src\wheel_tag.py -> build\lib\chimerax\bundle_builder
6097copying src\__init__.py -> build\lib\chimerax\bundle_builder
6098copying src\__main__.py -> build\lib\chimerax\bundle_builder
6099running egg_info
6100writing ChimeraX_BundleBuilder.egg-info\PKG-INFO
6101writing dependency_links to ChimeraX_BundleBuilder.egg-info\dependency_links.txt
6102writing entry points to ChimeraX_BundleBuilder.egg-info\entry_points.txt
6103writing top-level names to ChimeraX_BundleBuilder.egg-info\top_level.txt
6104reading manifest file 'ChimeraX_BundleBuilder.egg-info\SOURCES.txt'
6105writing manifest file 'ChimeraX_BundleBuilder.egg-info\SOURCES.txt'
6106installing to build\bdist.win-amd64\wheel
6107running install
6108running install_lib
6109creating build\bdist.win-amd64\wheel
6110creating build\bdist.win-amd64\wheel\chimerax
6111creating build\bdist.win-amd64\wheel\chimerax\bundle_builder
6112copying build\lib\chimerax\bundle_builder\bundle_builder.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6113copying build\lib\chimerax\bundle_builder\bundle_builder_toml.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6114copying build\lib\chimerax\bundle_builder\classifiers.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6115copying build\lib\chimerax\bundle_builder\cx_pep517.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6116copying build\lib\chimerax\bundle_builder\metadata_templates.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6117copying build\lib\chimerax\bundle_builder\wheel_tag.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6118copying build\lib\chimerax\bundle_builder\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6119copying build\lib\chimerax\bundle_builder\__main__.py -> build\bdist.win-amd64\wheel\.\chimerax\bundle_builder
6120running install_egg_info
6121Copying ChimeraX_BundleBuilder.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_BundleBuilder-1.6.0-py3.11.egg-info
6122running install_scripts
6123creating build\bdist.win-amd64\wheel\chimerax_bundlebuilder-1.6.0.dist-info\WHEEL
6124creating 'C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\bundle_builder\dist\.tmp-lrx6njwh\chimerax_bundlebuilder-1.6.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
6125adding 'chimerax/bundle_builder/__init__.py'
6126adding 'chimerax/bundle_builder/__main__.py'
6127adding 'chimerax/bundle_builder/bundle_builder.py'
6128adding 'chimerax/bundle_builder/bundle_builder_toml.py'
6129adding 'chimerax/bundle_builder/classifiers.py'
6130adding 'chimerax/bundle_builder/cx_pep517.py'
6131adding 'chimerax/bundle_builder/metadata_templates.py'
6132adding 'chimerax/bundle_builder/wheel_tag.py'
6133adding 'chimerax_bundlebuilder-1.6.0.dist-info/METADATA'
6134adding 'chimerax_bundlebuilder-1.6.0.dist-info/WHEEL'
6135adding 'chimerax_bundlebuilder-1.6.0.dist-info/entry_points.txt'
6136adding 'chimerax_bundlebuilder-1.6.0.dist-info/top_level.txt'
6137adding 'chimerax_bundlebuilder-1.6.0.dist-info/RECORD'
6138removing build\bdist.win-amd64\wheel
6139Successfully built chimerax_bundlebuilder-1.6.0-py3-none-any.whl
6140PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip uninstall --yes ChimeraX-BundleBuilder
6141WARNING: Skipping ChimeraX-BundleBuilder as it is not installed.
6142PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --no-build-isolation .
6143Processing c:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\bundle_builder
6144 Preparing metadata (pyproject.toml): started
6145 Preparing metadata (pyproject.toml): finished with status 'done'
6146Building wheels for collected packages: ChimeraX-BundleBuilder
6147 Building wheel for ChimeraX-BundleBuilder (pyproject.toml): started
6148 Building wheel for ChimeraX-BundleBuilder (pyproject.toml): finished with status 'done'
6149 Created wheel for ChimeraX-BundleBuilder: filename=chimerax_bundlebuilder-1.6.0-py3-none-any.whl size=43032 sha256=fb9270c7fa36b39909103566b1561f99a4a3b7553ee66d393ccb228f2d191911
6150 Stored in directory: C:\Users\goddard\AppData\Local\Temp\pip-ephem-wheel-cache-kri12o1o\wheels\5a\0b\1e\6056bfd6c4777dda0c5dc7df0828d0bd3d66770a2126b5f3b6
6151Successfully built ChimeraX-BundleBuilder
6152Installing collected packages: ChimeraX-BundleBuilder
6153Successfully installed ChimeraX-BundleBuilder-1.6.0
6154make sync
6155make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
6156cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync/
6157'dist/chimerax_bundlebuilder-1.6.0-py3-none-any.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_bundlebuilder-1.6.0-py3-none-any.whl'
6158make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
6159make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bundle_builder'
6160make -C core build
6161make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core'
6162rm -rf __pycache__ src/__pycache__ build dist *.egg-info src/_serialize.cpp \
6163 src/buildinfo.py src/commands/_atomspec.py src/toolshed/__pycache__ \
6164 src/lib/* core_cpp/*/*.a core_cpp/*/*.o src/include src/*.so \
6165 chutil_cpp logger_cpp ioutil_cpp mac_util_cpp toolshed commands \
6166 _serialize.cpp buildinfo.py setup.py
6167rm -f src/buildinfo.py
6168PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I mkbuildinfo -b /home/goddard/ucsf/chimerax 1.11.dev202509231826 || (rm src/buildinfo.py ; exit 1)
6169PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m grako --name _atomspec -o src/commands/_atomspec.py src/commands/_atomspec.peg
6170------------------------------------------------------------------------
6171 503 lines in grammar
6172 28 rules in grammar
6173 303 nodes in AST
6174PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m build --no-isolation --wheel
6175* Getting build dependencies for wheel...
6176* Building wheel...
6177Compiling src/_serialize.pyx because it changed.
6178[1/1] Cythonizing src/_serialize.pyx
6179C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
6180 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
6181cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
6182cmp_nocase.cpp
6183core_cpp/chutil\cmp_nocase.cpp(46): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
6184cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
6185IOFile.cpp
6186core_cpp/chutil\IOFile.cpp(63): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
6187core_cpp/chutil\IOFile.cpp(85): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
6188core_cpp/chutil\IOFile.cpp(111): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
6189Microsoft (R) Library Manager Version 14.29.30152.0
6190Copyright (C) Microsoft Corporation. All rights reserved.
6191
6192cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
6193GetOpt.cpp
6194cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
6195pstream.cpp
6196core_cpp/ioutil\pstream.cpp(132): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
6197core_cpp/ioutil\pstream.cpp(92): warning C4996: '_wgetenv': This function or variable may be unsafe. Consider using _wdupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
6198core_cpp/ioutil\pstream.cpp(98): warning C4996: 'GetVersionExA': was declared deprecated
6199cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
6200tokenize.cpp
6201core_cpp/ioutil\tokenize.cpp(55): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
6202core_cpp/ioutil\tokenize.cpp(92): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
6203win32_dirent.c
6204core_cpp/ioutil/win32_dirent.c(54): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
6205core_cpp/ioutil/win32_dirent.c(47): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
6206core_cpp/ioutil/win32_dirent.c(56): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
6207core_cpp/ioutil/win32_dirent.c(91): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
6208Microsoft (R) Library Manager Version 14.29.30152.0
6209Copyright (C) Microsoft Corporation. All rights reserved.
6210
6211cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
6212logger.cpp
6213Microsoft (R) Library Manager Version 14.29.30152.0
6214Copyright (C) Microsoft Corporation. All rights reserved.
6215
6216C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
6217!!
6218
6219 ********************************************************************************
6220 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
6221
6222 By 2026-Feb-18, you need to update your project and remove deprecated calls
6223 or your builds will no longer be supported.
6224
6225 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6226 ********************************************************************************
6227
6228!!
6229 corresp(dist, value, root_dir)
6230C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\expand.py:126: SetuptoolsWarning: File 'C:\\cygwin64\\home\\goddard\\ucsf\\chimerax\\src\\bundles\\core\\copyright.txt' cannot be found
6231 return '\n'.join(
6232running build
6233running build_py
6234creating build\lib.win-amd64-cpython-311\chimerax\core
6235copying src\attributes.py -> build\lib.win-amd64-cpython-311\chimerax\core
6236copying src\buildinfo.py -> build\lib.win-amd64-cpython-311\chimerax\core
6237copying src\colors.py -> build\lib.win-amd64-cpython-311\chimerax\core
6238copying src\configfile.py -> build\lib.win-amd64-cpython-311\chimerax\core
6239copying src\core_settings.py -> build\lib.win-amd64-cpython-311\chimerax\core
6240copying src\core_triggers.py -> build\lib.win-amd64-cpython-311\chimerax\core
6241copying src\data_events.py -> build\lib.win-amd64-cpython-311\chimerax\core
6242copying src\decorators.py -> build\lib.win-amd64-cpython-311\chimerax\core
6243copying src\errors.py -> build\lib.win-amd64-cpython-311\chimerax\core
6244copying src\fetch.py -> build\lib.win-amd64-cpython-311\chimerax\core
6245copying src\filehistory.py -> build\lib.win-amd64-cpython-311\chimerax\core
6246copying src\generic3d.py -> build\lib.win-amd64-cpython-311\chimerax\core
6247copying src\history.py -> build\lib.win-amd64-cpython-311\chimerax\core
6248copying src\logger.py -> build\lib.win-amd64-cpython-311\chimerax\core
6249copying src\models.py -> build\lib.win-amd64-cpython-311\chimerax\core
6250copying src\nogui.py -> build\lib.win-amd64-cpython-311\chimerax\core
6251copying src\objects.py -> build\lib.win-amd64-cpython-311\chimerax\core
6252copying src\orderedset.py -> build\lib.win-amd64-cpython-311\chimerax\core
6253copying src\order_dag.py -> build\lib.win-amd64-cpython-311\chimerax\core
6254copying src\python_utils.py -> build\lib.win-amd64-cpython-311\chimerax\core
6255copying src\safesave.py -> build\lib.win-amd64-cpython-311\chimerax\core
6256copying src\scripting.py -> build\lib.win-amd64-cpython-311\chimerax\core
6257copying src\selection.py -> build\lib.win-amd64-cpython-311\chimerax\core
6258copying src\serialize.py -> build\lib.win-amd64-cpython-311\chimerax\core
6259copying src\session.py -> build\lib.win-amd64-cpython-311\chimerax\core
6260copying src\settings.py -> build\lib.win-amd64-cpython-311\chimerax\core
6261copying src\startup.py -> build\lib.win-amd64-cpython-311\chimerax\core
6262copying src\state.py -> build\lib.win-amd64-cpython-311\chimerax\core
6263copying src\tasks.py -> build\lib.win-amd64-cpython-311\chimerax\core
6264copying src\threadq.py -> build\lib.win-amd64-cpython-311\chimerax\core
6265copying src\tools.py -> build\lib.win-amd64-cpython-311\chimerax\core
6266copying src\triggerset.py -> build\lib.win-amd64-cpython-311\chimerax\core
6267copying src\undo.py -> build\lib.win-amd64-cpython-311\chimerax\core
6268copying src\updateloop.py -> build\lib.win-amd64-cpython-311\chimerax\core
6269copying src\utils.py -> build\lib.win-amd64-cpython-311\chimerax\core
6270copying src\x3d.py -> build\lib.win-amd64-cpython-311\chimerax\core
6271copying src\_serial_python.py -> build\lib.win-amd64-cpython-311\chimerax\core
6272copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\core
6273copying src\__main__.py -> build\lib.win-amd64-cpython-311\chimerax\core
6274creating build\lib.win-amd64-cpython-311\chimerax\core\commands
6275copying src\commands\atomspec.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6276copying src\commands\cli.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6277copying src\commands\colorarg.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6278copying src\commands\devel.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6279copying src\commands\logging.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6280copying src\commands\motion.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6281copying src\commands\pip.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6282copying src\commands\run.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6283copying src\commands\runscript.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6284copying src\commands\toolshed.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6285copying src\commands\_atomspec.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6286copying src\commands\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\core\commands
6287creating build\lib.win-amd64-cpython-311\chimerax\core\toolshed
6288copying src\toolshed\available.py -> build\lib.win-amd64-cpython-311\chimerax\core\toolshed
6289copying src\toolshed\info.py -> build\lib.win-amd64-cpython-311\chimerax\core\toolshed
6290copying src\toolshed\installed.py -> build\lib.win-amd64-cpython-311\chimerax\core\toolshed
6291copying src\toolshed\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\core\toolshed
6292creating build\lib.win-amd64-cpython-311\chimerax\core\lib
6293copying src\lib\libchutil.lib -> build\lib.win-amd64-cpython-311\chimerax\core\lib
6294copying src\lib\libioutil.lib -> build\lib.win-amd64-cpython-311\chimerax\core\lib
6295copying src\lib\liblogger.lib -> build\lib.win-amd64-cpython-311\chimerax\core\lib
6296creating build\lib.win-amd64-cpython-311\chimerax\core\include\chutil
6297copying src\include\chutil\cmp_nocase.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\chutil
6298copying src\include\chutil\CString.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\chutil
6299copying src\include\chutil\IOFile.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\chutil
6300copying src\include\chutil\VectorMap.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\chutil
6301creating build\lib.win-amd64-cpython-311\chimerax\core\include\logger
6302copying src\include\logger\imex.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\logger
6303copying src\include\logger\logger.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\logger
6304creating build\lib.win-amd64-cpython-311\chimerax\core\include\pysupport
6305copying src\include\pysupport\convert.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\pysupport
6306copying src\colorbrewer.json -> build\lib.win-amd64-cpython-311\chimerax\core
6307creating build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil
6308copying src\include\ioutil\direntry.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil
6309copying src\include\ioutil\GetOpt.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil
6310copying src\include\ioutil\pstream.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil
6311copying src\include\ioutil\tokenize.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil
6312copying src\include\ioutil\win32_dirent.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil
6313creating build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util
6314copying src\include\mac_util\enablemultitouch.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util
6315copying src\include\mac_util\enablemultitouch_mac.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util
6316copying src\include\mac_util\setfileicon.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util
6317copying src\include\mac_util\setfileicon_mac.h -> build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util
6318running build_ext
6319building 'chimerax.core._serialize' extension
6320creating build\temp.win-amd64-cpython-311\Release\src
6321"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=1 -DMINOR_VERSION=0 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpsrc/_serialize.cpp /Fobuild\temp.win-amd64-cpython-311\Release\src\_serialize.obj /std:c++11
6322cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
6323_serialize.cpp
6324The contents of <string_view> are available only with C++17 or later.
6325src/_serialize.cpp(4090): warning C4267: 'argument': conversion from 'size_t' to 'const _Elem', possible loss of data
6326 with
6327 [
6328 _Elem=char
6329 ]
6330src/_serialize.cpp(4104): warning C4267: 'argument': conversion from 'size_t' to 'const _Elem', possible loss of data
6331 with
6332 [
6333 _Elem=char
6334 ]
6335src/_serialize.cpp(4256): warning C4267: 'argument': conversion from 'size_t' to 'const _Elem', possible loss of data
6336 with
6337 [
6338 _Elem=char
6339 ]
6340src/_serialize.cpp(4270): warning C4267: 'argument': conversion from 'size_t' to 'const _Elem', possible loss of data
6341 with
6342 [
6343 _Elem=char
6344 ]
6345src/_serialize.cpp(4284): warning C4267: 'argument': conversion from 'size_t' to 'const _Elem', possible loss of data
6346 with
6347 [
6348 _Elem=char
6349 ]
6350src/_serialize.cpp(14637): warning C4551: function call missing argument list
6351src/_serialize.cpp(14644): warning C4551: function call missing argument list
6352src/_serialize.cpp(14835): warning C4551: function call missing argument list
6353src/_serialize.cpp(14836): warning C4551: function call missing argument list
6354src/_serialize.cpp(14837): warning C4551: function call missing argument list
6355src/_serialize.cpp(15365): warning C4551: function call missing argument list
6356src/_serialize.cpp(17617): warning C4551: function call missing argument list
6357src/_serialize.cpp(17641): warning C4551: function call missing argument list
6358src/_serialize.cpp(17642): warning C4551: function call missing argument list
6359src/_serialize.cpp(17643): warning C4551: function call missing argument list
6360"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit__serialize build\temp.win-amd64-cpython-311\Release\src\_serialize.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\core\_serialize.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\src\_serialize.cp311-win_amd64.lib
6361 Creating library build\temp.win-amd64-cpython-311\Release\src\_serialize.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\src\_serialize.cp311-win_amd64.exp
6362Generating code
6363Finished generating code
6364running bdist_wheel
6365installing to build\bdist.win-amd64\wheel
6366running install
6367running install_lib
6368running build_ext
6369creating build\bdist.win-amd64\wheel
6370creating build\bdist.win-amd64\wheel\chimerax
6371creating build\bdist.win-amd64\wheel\chimerax\core
6372copying build\lib.win-amd64-cpython-311\chimerax\core\attributes.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6373copying build\lib.win-amd64-cpython-311\chimerax\core\buildinfo.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6374copying build\lib.win-amd64-cpython-311\chimerax\core\colorbrewer.json -> build\bdist.win-amd64\wheel\.\chimerax\core
6375copying build\lib.win-amd64-cpython-311\chimerax\core\colors.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6376creating build\bdist.win-amd64\wheel\chimerax\core\commands
6377copying build\lib.win-amd64-cpython-311\chimerax\core\commands\atomspec.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6378copying build\lib.win-amd64-cpython-311\chimerax\core\commands\cli.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6379copying build\lib.win-amd64-cpython-311\chimerax\core\commands\colorarg.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6380copying build\lib.win-amd64-cpython-311\chimerax\core\commands\devel.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6381copying build\lib.win-amd64-cpython-311\chimerax\core\commands\logging.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6382copying build\lib.win-amd64-cpython-311\chimerax\core\commands\motion.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6383copying build\lib.win-amd64-cpython-311\chimerax\core\commands\pip.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6384copying build\lib.win-amd64-cpython-311\chimerax\core\commands\run.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6385copying build\lib.win-amd64-cpython-311\chimerax\core\commands\runscript.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6386copying build\lib.win-amd64-cpython-311\chimerax\core\commands\toolshed.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6387copying build\lib.win-amd64-cpython-311\chimerax\core\commands\_atomspec.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6388copying build\lib.win-amd64-cpython-311\chimerax\core\commands\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\core\commands
6389copying build\lib.win-amd64-cpython-311\chimerax\core\configfile.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6390copying build\lib.win-amd64-cpython-311\chimerax\core\core_settings.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6391copying build\lib.win-amd64-cpython-311\chimerax\core\core_triggers.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6392copying build\lib.win-amd64-cpython-311\chimerax\core\data_events.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6393copying build\lib.win-amd64-cpython-311\chimerax\core\decorators.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6394copying build\lib.win-amd64-cpython-311\chimerax\core\errors.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6395copying build\lib.win-amd64-cpython-311\chimerax\core\fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6396copying build\lib.win-amd64-cpython-311\chimerax\core\filehistory.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6397copying build\lib.win-amd64-cpython-311\chimerax\core\generic3d.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6398copying build\lib.win-amd64-cpython-311\chimerax\core\history.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6399creating build\bdist.win-amd64\wheel\chimerax\core\include
6400creating build\bdist.win-amd64\wheel\chimerax\core\include\chutil
6401copying build\lib.win-amd64-cpython-311\chimerax\core\include\chutil\cmp_nocase.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\chutil
6402copying build\lib.win-amd64-cpython-311\chimerax\core\include\chutil\CString.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\chutil
6403copying build\lib.win-amd64-cpython-311\chimerax\core\include\chutil\IOFile.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\chutil
6404copying build\lib.win-amd64-cpython-311\chimerax\core\include\chutil\VectorMap.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\chutil
6405creating build\bdist.win-amd64\wheel\chimerax\core\include\ioutil
6406copying build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil\direntry.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\ioutil
6407copying build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil\GetOpt.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\ioutil
6408copying build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil\pstream.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\ioutil
6409copying build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil\tokenize.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\ioutil
6410copying build\lib.win-amd64-cpython-311\chimerax\core\include\ioutil\win32_dirent.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\ioutil
6411creating build\bdist.win-amd64\wheel\chimerax\core\include\logger
6412copying build\lib.win-amd64-cpython-311\chimerax\core\include\logger\imex.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\logger
6413copying build\lib.win-amd64-cpython-311\chimerax\core\include\logger\logger.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\logger
6414creating build\bdist.win-amd64\wheel\chimerax\core\include\mac_util
6415copying build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util\enablemultitouch.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\mac_util
6416copying build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util\enablemultitouch_mac.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\mac_util
6417copying build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util\setfileicon.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\mac_util
6418copying build\lib.win-amd64-cpython-311\chimerax\core\include\mac_util\setfileicon_mac.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\mac_util
6419creating build\bdist.win-amd64\wheel\chimerax\core\include\pysupport
6420copying build\lib.win-amd64-cpython-311\chimerax\core\include\pysupport\convert.h -> build\bdist.win-amd64\wheel\.\chimerax\core\include\pysupport
6421creating build\bdist.win-amd64\wheel\chimerax\core\lib
6422copying build\lib.win-amd64-cpython-311\chimerax\core\lib\libchutil.lib -> build\bdist.win-amd64\wheel\.\chimerax\core\lib
6423copying build\lib.win-amd64-cpython-311\chimerax\core\lib\libioutil.lib -> build\bdist.win-amd64\wheel\.\chimerax\core\lib
6424copying build\lib.win-amd64-cpython-311\chimerax\core\lib\liblogger.lib -> build\bdist.win-amd64\wheel\.\chimerax\core\lib
6425copying build\lib.win-amd64-cpython-311\chimerax\core\logger.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6426copying build\lib.win-amd64-cpython-311\chimerax\core\models.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6427copying build\lib.win-amd64-cpython-311\chimerax\core\nogui.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6428copying build\lib.win-amd64-cpython-311\chimerax\core\objects.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6429copying build\lib.win-amd64-cpython-311\chimerax\core\orderedset.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6430copying build\lib.win-amd64-cpython-311\chimerax\core\order_dag.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6431copying build\lib.win-amd64-cpython-311\chimerax\core\python_utils.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6432copying build\lib.win-amd64-cpython-311\chimerax\core\safesave.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6433copying build\lib.win-amd64-cpython-311\chimerax\core\scripting.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6434copying build\lib.win-amd64-cpython-311\chimerax\core\selection.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6435copying build\lib.win-amd64-cpython-311\chimerax\core\serialize.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6436copying build\lib.win-amd64-cpython-311\chimerax\core\session.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6437copying build\lib.win-amd64-cpython-311\chimerax\core\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6438copying build\lib.win-amd64-cpython-311\chimerax\core\startup.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6439copying build\lib.win-amd64-cpython-311\chimerax\core\state.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6440copying build\lib.win-amd64-cpython-311\chimerax\core\tasks.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6441copying build\lib.win-amd64-cpython-311\chimerax\core\threadq.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6442copying build\lib.win-amd64-cpython-311\chimerax\core\tools.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6443creating build\bdist.win-amd64\wheel\chimerax\core\toolshed
6444copying build\lib.win-amd64-cpython-311\chimerax\core\toolshed\available.py -> build\bdist.win-amd64\wheel\.\chimerax\core\toolshed
6445copying build\lib.win-amd64-cpython-311\chimerax\core\toolshed\info.py -> build\bdist.win-amd64\wheel\.\chimerax\core\toolshed
6446copying build\lib.win-amd64-cpython-311\chimerax\core\toolshed\installed.py -> build\bdist.win-amd64\wheel\.\chimerax\core\toolshed
6447copying build\lib.win-amd64-cpython-311\chimerax\core\toolshed\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\core\toolshed
6448copying build\lib.win-amd64-cpython-311\chimerax\core\triggerset.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6449copying build\lib.win-amd64-cpython-311\chimerax\core\undo.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6450copying build\lib.win-amd64-cpython-311\chimerax\core\updateloop.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6451copying build\lib.win-amd64-cpython-311\chimerax\core\utils.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6452copying build\lib.win-amd64-cpython-311\chimerax\core\x3d.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6453copying build\lib.win-amd64-cpython-311\chimerax\core\_serialize.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\core
6454copying build\lib.win-amd64-cpython-311\chimerax\core\_serial_python.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6455copying build\lib.win-amd64-cpython-311\chimerax\core\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6456copying build\lib.win-amd64-cpython-311\chimerax\core\__main__.py -> build\bdist.win-amd64\wheel\.\chimerax\core
6457running install_egg_info
6458running egg_info
6459creating ChimeraX_Core.egg-info
6460writing ChimeraX_Core.egg-info\PKG-INFO
6461writing dependency_links to ChimeraX_Core.egg-info\dependency_links.txt
6462writing top-level names to ChimeraX_Core.egg-info\top_level.txt
6463writing manifest file 'ChimeraX_Core.egg-info\SOURCES.txt'
6464reading manifest file 'ChimeraX_Core.egg-info\SOURCES.txt'
6465writing manifest file 'ChimeraX_Core.egg-info\SOURCES.txt'
6466Copying ChimeraX_Core.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Core-1.11.dev202509231826-py3.11.egg-info
6467running install_scripts
6468C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
6469 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
6470creating build\bdist.win-amd64\wheel\chimerax_core-1.11.dev202509231826.dist-info\WHEEL
6471creating 'dist\chimerax_core-1.11.dev202509231826-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
6472adding 'chimerax/core/__init__.py'
6473adding 'chimerax/core/__main__.py'
6474adding 'chimerax/core/_serial_python.py'
6475adding 'chimerax/core/_serialize.cp311-win_amd64.pyd'
6476adding 'chimerax/core/attributes.py'
6477adding 'chimerax/core/buildinfo.py'
6478adding 'chimerax/core/colorbrewer.json'
6479adding 'chimerax/core/colors.py'
6480adding 'chimerax/core/configfile.py'
6481adding 'chimerax/core/core_settings.py'
6482adding 'chimerax/core/core_triggers.py'
6483adding 'chimerax/core/data_events.py'
6484adding 'chimerax/core/decorators.py'
6485adding 'chimerax/core/errors.py'
6486adding 'chimerax/core/fetch.py'
6487adding 'chimerax/core/filehistory.py'
6488adding 'chimerax/core/generic3d.py'
6489adding 'chimerax/core/history.py'
6490adding 'chimerax/core/logger.py'
6491adding 'chimerax/core/models.py'
6492adding 'chimerax/core/nogui.py'
6493adding 'chimerax/core/objects.py'
6494adding 'chimerax/core/order_dag.py'
6495adding 'chimerax/core/orderedset.py'
6496adding 'chimerax/core/python_utils.py'
6497adding 'chimerax/core/safesave.py'
6498adding 'chimerax/core/scripting.py'
6499adding 'chimerax/core/selection.py'
6500adding 'chimerax/core/serialize.py'
6501adding 'chimerax/core/session.py'
6502adding 'chimerax/core/settings.py'
6503adding 'chimerax/core/startup.py'
6504adding 'chimerax/core/state.py'
6505adding 'chimerax/core/tasks.py'
6506adding 'chimerax/core/threadq.py'
6507adding 'chimerax/core/tools.py'
6508adding 'chimerax/core/triggerset.py'
6509adding 'chimerax/core/undo.py'
6510adding 'chimerax/core/updateloop.py'
6511adding 'chimerax/core/utils.py'
6512adding 'chimerax/core/x3d.py'
6513adding 'chimerax/core/commands/__init__.py'
6514adding 'chimerax/core/commands/_atomspec.py'
6515adding 'chimerax/core/commands/atomspec.py'
6516adding 'chimerax/core/commands/cli.py'
6517adding 'chimerax/core/commands/colorarg.py'
6518adding 'chimerax/core/commands/devel.py'
6519adding 'chimerax/core/commands/logging.py'
6520adding 'chimerax/core/commands/motion.py'
6521adding 'chimerax/core/commands/pip.py'
6522adding 'chimerax/core/commands/run.py'
6523adding 'chimerax/core/commands/runscript.py'
6524adding 'chimerax/core/commands/toolshed.py'
6525adding 'chimerax/core/include/chutil/CString.h'
6526adding 'chimerax/core/include/chutil/IOFile.h'
6527adding 'chimerax/core/include/chutil/VectorMap.h'
6528adding 'chimerax/core/include/chutil/cmp_nocase.h'
6529adding 'chimerax/core/include/ioutil/GetOpt.h'
6530adding 'chimerax/core/include/ioutil/direntry.h'
6531adding 'chimerax/core/include/ioutil/pstream.h'
6532adding 'chimerax/core/include/ioutil/tokenize.h'
6533adding 'chimerax/core/include/ioutil/win32_dirent.h'
6534adding 'chimerax/core/include/logger/imex.h'
6535adding 'chimerax/core/include/logger/logger.h'
6536adding 'chimerax/core/include/mac_util/enablemultitouch.h'
6537adding 'chimerax/core/include/mac_util/enablemultitouch_mac.h'
6538adding 'chimerax/core/include/mac_util/setfileicon.h'
6539adding 'chimerax/core/include/mac_util/setfileicon_mac.h'
6540adding 'chimerax/core/include/pysupport/convert.h'
6541adding 'chimerax/core/lib/libchutil.lib'
6542adding 'chimerax/core/lib/libioutil.lib'
6543adding 'chimerax/core/lib/liblogger.lib'
6544adding 'chimerax/core/toolshed/__init__.py'
6545adding 'chimerax/core/toolshed/available.py'
6546adding 'chimerax/core/toolshed/info.py'
6547adding 'chimerax/core/toolshed/installed.py'
6548adding 'chimerax_core-1.11.dev202509231826.dist-info/METADATA'
6549adding 'chimerax_core-1.11.dev202509231826.dist-info/WHEEL'
6550adding 'chimerax_core-1.11.dev202509231826.dist-info/top_level.txt'
6551adding 'chimerax_core-1.11.dev202509231826.dist-info/RECORD'
6552removing build\bdist.win-amd64\wheel
6553Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\core\dist\chimerax_core-1.11.dev202509231826-cp311-cp311-win_amd64.whl
6554Successfully built chimerax_core-1.11.dev202509231826-cp311-cp311-win_amd64.whl
6555# newer versions of pip won't install over the same version number (which depends on the last commit
6556# number), so to install something that hasn't been committed, uninstall first.
6557PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip uninstall --yes ChimeraX-Core
6558WARNING: Skipping ChimeraX-Core as it is not installed.
6559PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install dist/*.whl
6560Processing c:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\core\dist\chimerax_core-1.11.dev202509231826-cp311-cp311-win_amd64.whl
6561Installing collected packages: chimerax-core
6562Successfully installed chimerax-core-1.11.dev202509231826
6563make sync
6564make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core'
6565cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync/
6566'dist/chimerax_core-1.11.dev202509231826-cp311-cp311-win_amd64.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_core-1.11.dev202509231826-cp311-cp311-win_amd64.whl'
6567make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core'
6568make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core'
6569make -C toolshed_utils build
6570make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
6571PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m build --no-isolation --wheel
6572* Getting build dependencies for wheel...
6573C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
6574!!
6575
6576 ********************************************************************************
6577 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
6578
6579 By 2026-Feb-18, you need to update your project and remove deprecated calls
6580 or your builds will no longer be supported.
6581
6582 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6583 ********************************************************************************
6584
6585!!
6586 corresp(dist, value, root_dir)
6587C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
6588!!
6589
6590 ********************************************************************************
6591 Please consider removing the following classifiers in favor of a SPDX license expression:
6592
6593 License :: Free for non-commercial use
6594
6595 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6596 ********************************************************************************
6597
6598!!
6599 dist._finalize_license_expression()
6600C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
6601!!
6602
6603 ********************************************************************************
6604 Please consider removing the following classifiers in favor of a SPDX license expression:
6605
6606 License :: Free for non-commercial use
6607
6608 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6609 ********************************************************************************
6610
6611!!
6612 self._finalize_license_expression()
6613running egg_info
6614creating ChimeraX_ToolshedUtils.egg-info
6615writing ChimeraX_ToolshedUtils.egg-info\PKG-INFO
6616writing dependency_links to ChimeraX_ToolshedUtils.egg-info\dependency_links.txt
6617writing requirements to ChimeraX_ToolshedUtils.egg-info\requires.txt
6618writing top-level names to ChimeraX_ToolshedUtils.egg-info\top_level.txt
6619writing manifest file 'ChimeraX_ToolshedUtils.egg-info\SOURCES.txt'
6620reading manifest file 'ChimeraX_ToolshedUtils.egg-info\SOURCES.txt'
6621writing manifest file 'ChimeraX_ToolshedUtils.egg-info\SOURCES.txt'
6622* Building wheel...
6623C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
6624!!
6625
6626 ********************************************************************************
6627 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
6628
6629 By 2026-Feb-18, you need to update your project and remove deprecated calls
6630 or your builds will no longer be supported.
6631
6632 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6633 ********************************************************************************
6634
6635!!
6636 corresp(dist, value, root_dir)
6637C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
6638!!
6639
6640 ********************************************************************************
6641 Please consider removing the following classifiers in favor of a SPDX license expression:
6642
6643 License :: Free for non-commercial use
6644
6645 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6646 ********************************************************************************
6647
6648!!
6649 dist._finalize_license_expression()
6650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
6651!!
6652
6653 ********************************************************************************
6654 Please consider removing the following classifiers in favor of a SPDX license expression:
6655
6656 License :: Free for non-commercial use
6657
6658 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6659 ********************************************************************************
6660
6661!!
6662 self._finalize_license_expression()
6663running bdist_wheel
6664running build
6665running build_py
6666creating build\lib\chimerax\toolshed_utils
6667copying src\cmd.py -> build\lib\chimerax\toolshed_utils
6668copying src\tool.py -> build\lib\chimerax\toolshed_utils
6669copying src\__init__.py -> build\lib\chimerax\toolshed_utils
6670running egg_info
6671writing ChimeraX_ToolshedUtils.egg-info\PKG-INFO
6672writing dependency_links to ChimeraX_ToolshedUtils.egg-info\dependency_links.txt
6673writing requirements to ChimeraX_ToolshedUtils.egg-info\requires.txt
6674writing top-level names to ChimeraX_ToolshedUtils.egg-info\top_level.txt
6675reading manifest file 'ChimeraX_ToolshedUtils.egg-info\SOURCES.txt'
6676writing manifest file 'ChimeraX_ToolshedUtils.egg-info\SOURCES.txt'
6677installing to build\bdist.win-amd64\wheel
6678running install
6679running install_lib
6680creating build\bdist.win-amd64\wheel
6681creating build\bdist.win-amd64\wheel\chimerax
6682creating build\bdist.win-amd64\wheel\chimerax\toolshed_utils
6683copying build\lib\chimerax\toolshed_utils\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\toolshed_utils
6684copying build\lib\chimerax\toolshed_utils\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\toolshed_utils
6685copying build\lib\chimerax\toolshed_utils\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\toolshed_utils
6686running install_egg_info
6687Copying ChimeraX_ToolshedUtils.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ToolshedUtils-1.2.4-py3.11.egg-info
6688running install_scripts
6689creating build\bdist.win-amd64\wheel\chimerax_toolshedutils-1.2.4.dist-info\WHEEL
6690creating 'C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\toolshed_utils\dist\.tmp-zcbr686k\chimerax_toolshedutils-1.2.4-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
6691adding 'chimerax/toolshed_utils/__init__.py'
6692adding 'chimerax/toolshed_utils/cmd.py'
6693adding 'chimerax/toolshed_utils/tool.py'
6694adding 'chimerax_toolshedutils-1.2.4.dist-info/METADATA'
6695adding 'chimerax_toolshedutils-1.2.4.dist-info/WHEEL'
6696adding 'chimerax_toolshedutils-1.2.4.dist-info/top_level.txt'
6697adding 'chimerax_toolshedutils-1.2.4.dist-info/RECORD'
6698removing build\bdist.win-amd64\wheel
6699Successfully built chimerax_toolshedutils-1.2.4-py3-none-any.whl
6700PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip uninstall --yes ChimeraX-ToolshedUtils
6701WARNING: Skipping ChimeraX-ToolshedUtils as it is not installed.
6702PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --no-build-isolation .
6703Processing c:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\toolshed_utils
6704 Preparing metadata (pyproject.toml): started
6705 Preparing metadata (pyproject.toml): finished with status 'done'
6706Requirement already satisfied: wheel_filename~=1.2 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ChimeraX-ToolshedUtils==1.2.4) (1.4.2)
6707Building wheels for collected packages: ChimeraX-ToolshedUtils
6708 Building wheel for ChimeraX-ToolshedUtils (pyproject.toml): started
6709 Building wheel for ChimeraX-ToolshedUtils (pyproject.toml): finished with status 'done'
6710 Created wheel for ChimeraX-ToolshedUtils: filename=chimerax_toolshedutils-1.2.4-py3-none-any.whl size=12893 sha256=42acb16d4c551a5d7831ff4b3a10d0673b0023de1c1505bcc0dd28c2234265a6
6711 Stored in directory: C:\Users\goddard\AppData\Local\Temp\pip-ephem-wheel-cache-9ro_c9rb\wheels\dc\91\19\0f31b9931848c9e050286a062ebf71da887bdce8c78d5d4782
6712Successfully built ChimeraX-ToolshedUtils
6713Installing collected packages: ChimeraX-ToolshedUtils
6714Successfully installed ChimeraX-ToolshedUtils-1.2.4
6715# unlike normal bundles, install as well
6716make sync
6717make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
6718cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync/
6719'dist/chimerax_toolshedutils-1.2.4-py3-none-any.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_toolshedutils-1.2.4-py3-none-any.whl'
6720make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
6721make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolshed_utils'
6722make build
6723make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles'
6724if [ ! -d "/home/goddard/ucsf/chimerax/build/bin/Lib/site-packages/chimerax" ]; then mkdir -p /home/goddard/ucsf/chimerax/build/bin/Lib/site-packages/chimerax; fi
6725make -C add_charge build
6726make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
6727if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
6728 echo "missing ChimeraX application's python"; exit 1; \
6729else \
6730 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
6731fi
6732INFO:
6733Executing: devel build . exit true
6734C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
6735!!
6736
6737 ********************************************************************************
6738 Please consider removing the following classifiers in favor of a SPDX license expression:
6739
6740 License :: Free for non-commercial use
6741
6742 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6743 ********************************************************************************
6744
6745!!
6746 self._finalize_license_expression()
6747running build
6748running build_py
6749creating build\lib\chimerax\add_charge
6750copying src\5p_data.py -> build\lib\chimerax\add_charge
6751copying src\charge.py -> build\lib\chimerax\add_charge
6752copying src\cmd.py -> build\lib\chimerax\add_charge
6753copying src\data.py -> build\lib\chimerax\add_charge
6754copying src\dock_prep.py -> build\lib\chimerax\add_charge
6755copying src\process_lib.py -> build\lib\chimerax\add_charge
6756copying src\settings.py -> build\lib\chimerax\add_charge
6757copying src\tool.py -> build\lib\chimerax\add_charge
6758copying src\__init__.py -> build\lib\chimerax\add_charge
6759copying src\amber_name.defattr -> build\lib\chimerax\add_charge
6760running bdist_wheel
6761installing to build\bdist.win-amd64\wheel
6762running install
6763running install_lib
6764creating build\bdist.win-amd64\wheel
6765creating build\bdist.win-amd64\wheel\chimerax
6766creating build\bdist.win-amd64\wheel\chimerax\add_charge
6767copying build\lib\chimerax\add_charge\5p_data.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6768copying build\lib\chimerax\add_charge\amber_name.defattr -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6769copying build\lib\chimerax\add_charge\charge.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6770copying build\lib\chimerax\add_charge\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6771copying build\lib\chimerax\add_charge\data.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6772copying build\lib\chimerax\add_charge\dock_prep.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6773copying build\lib\chimerax\add_charge\process_lib.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6774copying build\lib\chimerax\add_charge\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6775copying build\lib\chimerax\add_charge\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6776copying build\lib\chimerax\add_charge\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\add_charge
6777running install_egg_info
6778running egg_info
6779creating ChimeraX_AddCharge.egg-info
6780writing ChimeraX_AddCharge.egg-info\PKG-INFO
6781writing dependency_links to ChimeraX_AddCharge.egg-info\dependency_links.txt
6782writing requirements to ChimeraX_AddCharge.egg-info\requires.txt
6783writing top-level names to ChimeraX_AddCharge.egg-info\top_level.txt
6784writing manifest file 'ChimeraX_AddCharge.egg-info\SOURCES.txt'
6785reading manifest file 'ChimeraX_AddCharge.egg-info\SOURCES.txt'
6786writing manifest file 'ChimeraX_AddCharge.egg-info\SOURCES.txt'
6787Copying ChimeraX_AddCharge.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AddCharge-1.5.20-py3.11.egg-info
6788running install_scripts
6789creating build\bdist.win-amd64\wheel\chimerax_addcharge-1.5.20.dist-info\WHEEL
6790creating 'dist\chimerax_addcharge-1.5.20-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
6791adding 'chimerax/add_charge/5p_data.py'
6792adding 'chimerax/add_charge/__init__.py'
6793adding 'chimerax/add_charge/amber_name.defattr'
6794adding 'chimerax/add_charge/charge.py'
6795adding 'chimerax/add_charge/cmd.py'
6796adding 'chimerax/add_charge/data.py'
6797adding 'chimerax/add_charge/dock_prep.py'
6798adding 'chimerax/add_charge/process_lib.py'
6799adding 'chimerax/add_charge/settings.py'
6800adding 'chimerax/add_charge/tool.py'
6801adding 'chimerax_addcharge-1.5.20.dist-info/METADATA'
6802adding 'chimerax_addcharge-1.5.20.dist-info/WHEEL'
6803adding 'chimerax_addcharge-1.5.20.dist-info/top_level.txt'
6804adding 'chimerax_addcharge-1.5.20.dist-info/RECORD'
6805removing build\bdist.win-amd64\wheel
6806Distribution is in .\dist\ChimeraX_AddCharge-1.5.20-py3-none-any.whl
6807INFO:
6808
6809make sync
6810make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
6811cp -av dist/*.whl ../../../build/sync
6812'dist/chimerax_addcharge-1.5.20-py3-none-any.whl' -> '../../../build/sync/chimerax_addcharge-1.5.20-py3-none-any.whl'
6813make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
6814make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/add_charge'
6815make -C addh build
6816make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
6817if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
6818 echo "missing ChimeraX application's python"; exit 1; \
6819else \
6820 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
6821fi
6822INFO:
6823Executing: devel build . exit true
6824C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
6825!!
6826
6827 ********************************************************************************
6828 Please consider removing the following classifiers in favor of a SPDX license expression:
6829
6830 License :: Free for non-commercial use
6831
6832 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6833 ********************************************************************************
6834
6835!!
6836 self._finalize_license_expression()
6837running build
6838running build_py
6839creating build\lib\chimerax\addh
6840copying src\cmd.py -> build\lib\chimerax\addh
6841copying src\dock_prep.py -> build\lib\chimerax\addh
6842copying src\hbond.py -> build\lib\chimerax\addh
6843copying src\simple.py -> build\lib\chimerax\addh
6844copying src\tool.py -> build\lib\chimerax\addh
6845copying src\util.py -> build\lib\chimerax\addh
6846copying src\__init__.py -> build\lib\chimerax\addh
6847running bdist_wheel
6848installing to build\bdist.win-amd64\wheel
6849running install
6850running install_lib
6851creating build\bdist.win-amd64\wheel
6852creating build\bdist.win-amd64\wheel\chimerax
6853creating build\bdist.win-amd64\wheel\chimerax\addh
6854copying build\lib\chimerax\addh\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\addh
6855copying build\lib\chimerax\addh\dock_prep.py -> build\bdist.win-amd64\wheel\.\chimerax\addh
6856copying build\lib\chimerax\addh\hbond.py -> build\bdist.win-amd64\wheel\.\chimerax\addh
6857copying build\lib\chimerax\addh\simple.py -> build\bdist.win-amd64\wheel\.\chimerax\addh
6858copying build\lib\chimerax\addh\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\addh
6859copying build\lib\chimerax\addh\util.py -> build\bdist.win-amd64\wheel\.\chimerax\addh
6860copying build\lib\chimerax\addh\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\addh
6861running install_egg_info
6862running egg_info
6863creating ChimeraX_AddH.egg-info
6864writing ChimeraX_AddH.egg-info\PKG-INFO
6865writing dependency_links to ChimeraX_AddH.egg-info\dependency_links.txt
6866writing requirements to ChimeraX_AddH.egg-info\requires.txt
6867writing top-level names to ChimeraX_AddH.egg-info\top_level.txt
6868writing manifest file 'ChimeraX_AddH.egg-info\SOURCES.txt'
6869reading manifest file 'ChimeraX_AddH.egg-info\SOURCES.txt'
6870writing manifest file 'ChimeraX_AddH.egg-info\SOURCES.txt'
6871Copying ChimeraX_AddH.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AddH-2.2.7-py3.11.egg-info
6872running install_scripts
6873creating build\bdist.win-amd64\wheel\chimerax_addh-2.2.7.dist-info\WHEEL
6874creating 'dist\chimerax_addh-2.2.7-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
6875adding 'chimerax/addh/__init__.py'
6876adding 'chimerax/addh/cmd.py'
6877adding 'chimerax/addh/dock_prep.py'
6878adding 'chimerax/addh/hbond.py'
6879adding 'chimerax/addh/simple.py'
6880adding 'chimerax/addh/tool.py'
6881adding 'chimerax/addh/util.py'
6882adding 'chimerax_addh-2.2.7.dist-info/METADATA'
6883adding 'chimerax_addh-2.2.7.dist-info/WHEEL'
6884adding 'chimerax_addh-2.2.7.dist-info/top_level.txt'
6885adding 'chimerax_addh-2.2.7.dist-info/RECORD'
6886removing build\bdist.win-amd64\wheel
6887Distribution is in .\dist\ChimeraX_AddH-2.2.7-py3-none-any.whl
6888INFO:
6889
6890make sync
6891make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
6892cp -av dist/*.whl ../../../build/sync
6893'dist/chimerax_addh-2.2.7-py3-none-any.whl' -> '../../../build/sync/chimerax_addh-2.2.7-py3-none-any.whl'
6894make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
6895make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/addh'
6896make -C arrays build
6897make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
6898if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
6899 echo "missing ChimeraX application's python"; exit 1; \
6900else \
6901 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel install . user false exit true noDeps true"; \
6902fi
6903INFO:
6904Executing: devel install . user false exit true noDeps true
6905pythonarray.cpp
6906_arrays/pythonarray.cpp(129): warning C4244: 'initializing': conversion from 'npy_intp' to 'int', possible loss of data
6907_arrays/pythonarray.cpp(509): warning C4244: '=': conversion from 'const _Ty' to 'long', possible loss of data
6908 with
6909 [
6910 _Ty=int64_t
6911 ]
6912rcarray.cpp
6913refcount.cpp
6914 Creating library src\lib\libarrays.lib and object src\lib\libarrays.exp
6915Generating code
6916Finished generating code
6917C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
6918!!
6919
6920 ********************************************************************************
6921 Please consider removing the following classifiers in favor of a SPDX license expression:
6922
6923 License :: Free for non-commercial use
6924
6925 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
6926 ********************************************************************************
6927
6928!!
6929 self._finalize_license_expression()
6930running build
6931running build_py
6932creating build\lib.win-amd64-cpython-311\chimerax\arrays
6933copying src\_pyarrays.py -> build\lib.win-amd64-cpython-311\chimerax\arrays
6934copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\arrays
6935creating build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays
6936copying src\include\arrays\pythonarray.h -> build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays
6937copying src\include\arrays\rcarray.h -> build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays
6938copying src\include\arrays\refcount.h -> build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays
6939copying src\include\arrays\imex.h -> build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays
6940creating build\lib.win-amd64-cpython-311\chimerax\arrays\lib
6941copying src\lib\libarrays.dll -> build\lib.win-amd64-cpython-311\chimerax\arrays\lib
6942copying src\lib\libarrays.lib -> build\lib.win-amd64-cpython-311\chimerax\arrays\lib
6943running build_ext
6944building 'chimerax.arrays._arrays' extension
6945creating build\temp.win-amd64-cpython-311\Release\_arrays
6946"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -Isrc/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_arrays/load_arrays.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_arrays\load_arrays.obj
6947load_arrays.cpp
6948"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:src/lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__arrays build\temp.win-amd64-cpython-311\Release\_arrays\load_arrays.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\arrays\_arrays.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_arrays\_arrays.cp311-win_amd64.lib
6949 Creating library build\temp.win-amd64-cpython-311\Release\_arrays\_arrays.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_arrays\_arrays.cp311-win_amd64.exp
6950Generating code
6951Finished generating code
6952running bdist_wheel
6953installing to build\bdist.win-amd64\wheel
6954running install
6955running install_lib
6956running build_ext
6957creating build\bdist.win-amd64\wheel
6958creating build\bdist.win-amd64\wheel\chimerax
6959creating build\bdist.win-amd64\wheel\chimerax\arrays
6960creating build\bdist.win-amd64\wheel\chimerax\arrays\include
6961creating build\bdist.win-amd64\wheel\chimerax\arrays\include\arrays
6962copying build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays\imex.h -> build\bdist.win-amd64\wheel\.\chimerax\arrays\include\arrays
6963copying build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays\pythonarray.h -> build\bdist.win-amd64\wheel\.\chimerax\arrays\include\arrays
6964copying build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays\rcarray.h -> build\bdist.win-amd64\wheel\.\chimerax\arrays\include\arrays
6965copying build\lib.win-amd64-cpython-311\chimerax\arrays\include\arrays\refcount.h -> build\bdist.win-amd64\wheel\.\chimerax\arrays\include\arrays
6966creating build\bdist.win-amd64\wheel\chimerax\arrays\lib
6967copying build\lib.win-amd64-cpython-311\chimerax\arrays\lib\libarrays.dll -> build\bdist.win-amd64\wheel\.\chimerax\arrays\lib
6968copying build\lib.win-amd64-cpython-311\chimerax\arrays\lib\libarrays.lib -> build\bdist.win-amd64\wheel\.\chimerax\arrays\lib
6969copying build\lib.win-amd64-cpython-311\chimerax\arrays\_arrays.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\arrays
6970copying build\lib.win-amd64-cpython-311\chimerax\arrays\_pyarrays.py -> build\bdist.win-amd64\wheel\.\chimerax\arrays
6971copying build\lib.win-amd64-cpython-311\chimerax\arrays\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\arrays
6972running install_egg_info
6973running egg_info
6974creating ChimeraX_Arrays.egg-info
6975writing ChimeraX_Arrays.egg-info\PKG-INFO
6976writing dependency_links to ChimeraX_Arrays.egg-info\dependency_links.txt
6977writing top-level names to ChimeraX_Arrays.egg-info\top_level.txt
6978writing manifest file 'ChimeraX_Arrays.egg-info\SOURCES.txt'
6979reading manifest file 'ChimeraX_Arrays.egg-info\SOURCES.txt'
6980writing manifest file 'ChimeraX_Arrays.egg-info\SOURCES.txt'
6981Copying ChimeraX_Arrays.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Arrays-1.1-py3.11.egg-info
6982running install_scripts
6983C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
6984 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
6985creating build\bdist.win-amd64\wheel\chimerax_arrays-1.1.dist-info\WHEEL
6986creating 'dist\chimerax_arrays-1.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
6987adding 'chimerax/arrays/__init__.py'
6988adding 'chimerax/arrays/_arrays.cp311-win_amd64.pyd'
6989adding 'chimerax/arrays/_pyarrays.py'
6990adding 'chimerax/arrays/include/arrays/imex.h'
6991adding 'chimerax/arrays/include/arrays/pythonarray.h'
6992adding 'chimerax/arrays/include/arrays/rcarray.h'
6993adding 'chimerax/arrays/include/arrays/refcount.h'
6994adding 'chimerax/arrays/lib/libarrays.dll'
6995adding 'chimerax/arrays/lib/libarrays.lib'
6996adding 'chimerax_arrays-1.1.dist-info/METADATA'
6997adding 'chimerax_arrays-1.1.dist-info/WHEEL'
6998adding 'chimerax_arrays-1.1.dist-info/top_level.txt'
6999adding 'chimerax_arrays-1.1.dist-info/RECORD'
7000removing build\bdist.win-amd64\wheel
7001Distribution is in .\dist\ChimeraX_Arrays-1.1-cp311-cp311-win_amd64.whl
7002STATUS:
7003Installing bundle
7004INFO:
7005Executing: toolshed install .\dist\ChimeraX_Arrays-1.1-cp311-cp311-win_amd64.whl userOnly false noDeps true
7006Installed ChimeraX-Arrays (1.1)
7007
7008make sync
7009make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
7010cp -av dist/*.whl ../../../build/sync
7011'dist/chimerax_arrays-1.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_arrays-1.1-cp311-cp311-win_amd64.whl'
7012make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
7013make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/arrays'
7014make -C alignment_algs build
7015make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
7016if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
7017 echo "missing ChimeraX application's python"; exit 1; \
7018else \
7019 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
7020fi
7021INFO:
7022Executing: devel build . exit true
7023support.cpp
7024 Creating library src\libalign_algs.lib and object src\libalign_algs.exp
7025Generating code
7026Finished generating code
7027C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
7028!!
7029
7030 ********************************************************************************
7031 Please consider removing the following classifiers in favor of a SPDX license expression:
7032
7033 License :: Free for non-commercial use
7034
7035 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
7036 ********************************************************************************
7037
7038!!
7039 self._finalize_license_expression()
7040running build
7041running build_py
7042creating build\lib.win-amd64-cpython-311\chimerax\alignment_algs
7043copying src\options.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_algs
7044copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_algs
7045creating build\lib.win-amd64-cpython-311\chimerax\alignment_algs\NeedlemanWunsch
7046copying src\NeedlemanWunsch\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_algs\NeedlemanWunsch
7047creating build\lib.win-amd64-cpython-311\chimerax\alignment_algs\include\align_algs
7048copying src\include\align_algs\support.h -> build\lib.win-amd64-cpython-311\chimerax\alignment_algs\include\align_algs
7049copying src\libalign_algs.dll -> build\lib.win-amd64-cpython-311\chimerax\alignment_algs
7050copying src\libalign_algs.lib -> build\lib.win-amd64-cpython-311\chimerax\alignment_algs
7051running build_ext
7052building 'chimerax.alignment_algs._nw' extension
7053building 'chimerax.alignment_algs._sw' extension
7054creating build\temp.win-amd64-cpython-311\Release\_sw
7055"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -Isrc/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_sw/sw.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_sw\sw.obj
7056sw.cpp
7057creating build\temp.win-amd64-cpython-311\Release\_nw
7058"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -Isrc/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_nw/nw.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_nw\nw.obj
7059nw.cpp
7060_sw/sw.cpp(73): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
7061_sw/sw.cpp(74): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
7062_sw/sw.cpp(288): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7063_sw/sw.cpp(300): warning C4146: unary minus operator applied to unsigned type, result still unsigned
7064_sw/sw.cpp(300): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7065_sw/sw.cpp(320): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7066_sw/sw.cpp(321): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7067"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:src /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libalign_algs.lib /EXPORT:PyInit__sw build\temp.win-amd64-cpython-311\Release\_sw\sw.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\alignment_algs\_sw.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_sw\_sw.cp311-win_amd64.lib
7068 Creating library build\temp.win-amd64-cpython-311\Release\_sw\_sw.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_sw\_sw.cp311-win_amd64.exp
7069Generating code
7070Finished generating code
7071_nw/nw.cpp(442): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
7072_nw/nw.cpp(447): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7073_nw/nw.cpp(469): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7074_nw/nw.cpp(250): warning C4101: 'e': unreferenced local variable
7075_nw/nw.cpp(319): warning C4101: 'e': unreferenced local variable
7076"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:src /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libalign_algs.lib libarrays.lib /EXPORT:PyInit__nw build\temp.win-amd64-cpython-311\Release\_nw\nw.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\alignment_algs\_nw.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_nw\_nw.cp311-win_amd64.lib
7077 Creating library build\temp.win-amd64-cpython-311\Release\_nw\_nw.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_nw\_nw.cp311-win_amd64.exp
7078Generating code
7079Finished generating code
7080running bdist_wheel
7081installing to build\bdist.win-amd64\wheel
7082running install
7083running install_lib
7084running build_ext
7085creating build\bdist.win-amd64\wheel
7086creating build\bdist.win-amd64\wheel\chimerax
7087creating build\bdist.win-amd64\wheel\chimerax\alignment_algs
7088creating build\bdist.win-amd64\wheel\chimerax\alignment_algs\include
7089creating build\bdist.win-amd64\wheel\chimerax\alignment_algs\include\align_algs
7090copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\include\align_algs\support.h -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs\include\align_algs
7091copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\libalign_algs.dll -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs
7092copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\libalign_algs.lib -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs
7093creating build\bdist.win-amd64\wheel\chimerax\alignment_algs\NeedlemanWunsch
7094copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\NeedlemanWunsch\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs\NeedlemanWunsch
7095copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\options.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs
7096copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\_nw.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs
7097copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\_sw.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs
7098copying build\lib.win-amd64-cpython-311\chimerax\alignment_algs\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_algs
7099running install_egg_info
7100running egg_info
7101creating ChimeraX_AlignmentAlgorithms.egg-info
7102writing ChimeraX_AlignmentAlgorithms.egg-info\PKG-INFO
7103writing dependency_links to ChimeraX_AlignmentAlgorithms.egg-info\dependency_links.txt
7104writing requirements to ChimeraX_AlignmentAlgorithms.egg-info\requires.txt
7105writing top-level names to ChimeraX_AlignmentAlgorithms.egg-info\top_level.txt
7106writing manifest file 'ChimeraX_AlignmentAlgorithms.egg-info\SOURCES.txt'
7107reading manifest file 'ChimeraX_AlignmentAlgorithms.egg-info\SOURCES.txt'
7108writing manifest file 'ChimeraX_AlignmentAlgorithms.egg-info\SOURCES.txt'
7109Copying ChimeraX_AlignmentAlgorithms.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AlignmentAlgorithms-2.0.2-py3.11.egg-info
7110running install_scripts
7111C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
7112 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
7113creating build\bdist.win-amd64\wheel\chimerax_alignmentalgorithms-2.0.2.dist-info\WHEEL
7114creating 'dist\chimerax_alignmentalgorithms-2.0.2-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
7115adding 'chimerax/alignment_algs/__init__.py'
7116adding 'chimerax/alignment_algs/_nw.cp311-win_amd64.pyd'
7117adding 'chimerax/alignment_algs/_sw.cp311-win_amd64.pyd'
7118adding 'chimerax/alignment_algs/libalign_algs.dll'
7119adding 'chimerax/alignment_algs/libalign_algs.lib'
7120adding 'chimerax/alignment_algs/options.py'
7121adding 'chimerax/alignment_algs/NeedlemanWunsch/__init__.py'
7122adding 'chimerax/alignment_algs/include/align_algs/support.h'
7123adding 'chimerax_alignmentalgorithms-2.0.2.dist-info/METADATA'
7124adding 'chimerax_alignmentalgorithms-2.0.2.dist-info/WHEEL'
7125adding 'chimerax_alignmentalgorithms-2.0.2.dist-info/top_level.txt'
7126adding 'chimerax_alignmentalgorithms-2.0.2.dist-info/RECORD'
7127removing build\bdist.win-amd64\wheel
7128Distribution is in .\dist\ChimeraX_AlignmentAlgorithms-2.0.2-cp311-cp311-win_amd64.whl
7129INFO:
7130
7131make sync
7132make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
7133cp -av dist/*.whl ../../../build/sync
7134'dist/chimerax_alignmentalgorithms-2.0.2-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_alignmentalgorithms-2.0.2-cp311-cp311-win_amd64.whl'
7135make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
7136make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_algs'
7137make -C alignment_headers build
7138make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
7139if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
7140 echo "missing ChimeraX application's python"; exit 1; \
7141else \
7142 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
7143fi
7144INFO:
7145Executing: devel build . exit true
7146C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\_distutils\dist.py:289: UserWarning: Unknown distribution option: 'distclass'
7147 warnings.warn(msg)
7148al2co.c
7149al2co/al2co.c(181): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7150al2co/al2co.c(182): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7151al2co/al2co.c(183): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7152al2co/al2co.c(184): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7153al2co/al2co.c(185): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7154al2co/al2co.c(186): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7155al2co/al2co.c(187): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7156al2co/al2co.c(188): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7157al2co/al2co.c(189): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7158al2co/al2co.c(248): warning C4267: 'function': conversion from 'size_t' to 'long', possible loss of data
7159al2co/al2co.c(249): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7160al2co/al2co.c(388): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7161al2co/al2co.c(399): warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7162al2co/al2co.c(400): warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7163al2co/al2co.c(190): warning C4996: 'sscanf': This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7164al2co/al2co.c(191): warning C4996: 'sscanf': This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7165al2co/al2co.c(192): warning C4996: 'sscanf': This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7166al2co/al2co.c(193): warning C4996: 'sscanf': This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7167al2co/al2co.c(194): warning C4996: 'sscanf': This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7168al2co/al2co.c(195): warning C4996: 'sscanf': This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7169al2co/al2co.c(208): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7170al2co/al2co.c(353): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7171al2co/al2co.c(364): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7172al2co/al2co.c(369): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7173al2co/al2co.c(397): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7174al2co/al2co.c(398): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7175al2co/al2co.c(443): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7176al2co/al2co.c(460): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7177al2co/al2co.c(716): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7178al2co/al2co.c(727): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7179al2co/al2co.c(766): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7180al2co/al2co.c(770): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7181al2co/al2co.c(1130): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7182al2co/al2co.c(1132): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7183al2co/al2co.c(1242): warning C4244: '=': conversion from '__int64' to 'int', possible loss of data
7184al2co/al2co.c(1257): warning C4244: '=': conversion from '__int64' to 'int', possible loss of data
7185al2co/al2co.c(1189): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7186al2co/al2co.c(1300): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7187al2co/al2co.c(1302): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7188al2co/al2co.c(1307): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7189al2co/al2co.c(1309): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
7190al2co/al2co.c(1301): warning C4996: 'fopen': This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
7191Generating code
7192Finished generating code
7193C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
7194!!
7195
7196 ********************************************************************************
7197 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
7198
7199 By 2026-Feb-18, you need to update your project and remove deprecated calls
7200 or your builds will no longer be supported.
7201
7202 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
7203 ********************************************************************************
7204
7205!!
7206 corresp(dist, value, root_dir)
7207running build
7208running build_py
7209creating build\lib.win-amd64-cpython-311\chimerax\alignment_headers
7210copying src\consensus.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_headers
7211copying src\conservation.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_headers
7212copying src\header_sequence.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_headers
7213copying src\rmsd.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_headers
7214copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\alignment_headers
7215creating build\lib.win-amd64-cpython-311\chimerax\alignment_headers\bin
7216copying src\bin\al2co.exe -> build\lib.win-amd64-cpython-311\chimerax\alignment_headers\bin
7217running build_ext
7218running bdist_wheel
7219installing to build\bdist.win-amd64\wheel
7220running install
7221running install_lib
7222running build_ext
7223creating build\bdist.win-amd64\wheel
7224creating build\bdist.win-amd64\wheel\chimerax
7225creating build\bdist.win-amd64\wheel\chimerax\alignment_headers
7226creating build\bdist.win-amd64\wheel\chimerax\alignment_headers\bin
7227copying build\lib.win-amd64-cpython-311\chimerax\alignment_headers\bin\al2co.exe -> build\bdist.win-amd64\wheel\.\chimerax\alignment_headers\bin
7228copying build\lib.win-amd64-cpython-311\chimerax\alignment_headers\consensus.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_headers
7229copying build\lib.win-amd64-cpython-311\chimerax\alignment_headers\conservation.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_headers
7230copying build\lib.win-amd64-cpython-311\chimerax\alignment_headers\header_sequence.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_headers
7231copying build\lib.win-amd64-cpython-311\chimerax\alignment_headers\rmsd.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_headers
7232copying build\lib.win-amd64-cpython-311\chimerax\alignment_headers\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\alignment_headers
7233running install_egg_info
7234running egg_info
7235creating ChimeraX_AlignmentHdrs.egg-info
7236writing ChimeraX_AlignmentHdrs.egg-info\PKG-INFO
7237writing dependency_links to ChimeraX_AlignmentHdrs.egg-info\dependency_links.txt
7238writing requirements to ChimeraX_AlignmentHdrs.egg-info\requires.txt
7239writing top-level names to ChimeraX_AlignmentHdrs.egg-info\top_level.txt
7240writing manifest file 'ChimeraX_AlignmentHdrs.egg-info\SOURCES.txt'
7241reading manifest file 'ChimeraX_AlignmentHdrs.egg-info\SOURCES.txt'
7242writing manifest file 'ChimeraX_AlignmentHdrs.egg-info\SOURCES.txt'
7243Copying ChimeraX_AlignmentHdrs.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AlignmentHdrs-3.6.1-py3.11.egg-info
7244running install_scripts
7245C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
7246 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
7247creating build\bdist.win-amd64\wheel\chimerax_alignmenthdrs-3.6.1.dist-info\WHEEL
7248creating 'dist\chimerax_alignmenthdrs-3.6.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
7249adding 'chimerax/alignment_headers/__init__.py'
7250adding 'chimerax/alignment_headers/consensus.py'
7251adding 'chimerax/alignment_headers/conservation.py'
7252adding 'chimerax/alignment_headers/header_sequence.py'
7253adding 'chimerax/alignment_headers/rmsd.py'
7254adding 'chimerax/alignment_headers/bin/al2co.exe'
7255adding 'chimerax_alignmenthdrs-3.6.1.dist-info/METADATA'
7256adding 'chimerax_alignmenthdrs-3.6.1.dist-info/WHEEL'
7257adding 'chimerax_alignmenthdrs-3.6.1.dist-info/top_level.txt'
7258adding 'chimerax_alignmenthdrs-3.6.1.dist-info/RECORD'
7259removing build\bdist.win-amd64\wheel
7260Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\alignment_headers\dist\chimerax_alignmenthdrs-3.6.1-cp311-cp311-win_amd64.whl
7261INFO:
7262
7263make sync
7264make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
7265cp -av dist/*.whl ../../../build/sync
7266'dist/chimerax_alignmenthdrs-3.6.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_alignmenthdrs-3.6.1-cp311-cp311-win_amd64.whl'
7267make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
7268make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alignment_headers'
7269make -C alphafold build
7270make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
7271if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
7272 echo "missing ChimeraX application's python"; exit 1; \
7273else \
7274 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
7275fi
7276INFO:
7277Executing: devel build . exit true
7278C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
7279!!
7280
7281 ********************************************************************************
7282 Please consider removing the following classifiers in favor of a SPDX license expression:
7283
7284 License :: Free for non-commercial use
7285
7286 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
7287 ********************************************************************************
7288
7289!!
7290 self._finalize_license_expression()
7291running build
7292running build_py
7293creating build\lib\chimerax\alphafold
7294copying src\alphafold21_predict_colab.py -> build\lib\chimerax\alphafold
7295copying src\alphafold22_predict_colab.py -> build\lib\chimerax\alphafold
7296copying src\alphafold_predict_colab.py -> build\lib\chimerax\alphafold
7297copying src\alphafold_search2_cgi.py -> build\lib\chimerax\alphafold
7298copying src\alphafold_search3_cgi.py -> build\lib\chimerax\alphafold
7299copying src\alphafold_search_cgi.py -> build\lib\chimerax\alphafold
7300copying src\blast.py -> build\lib\chimerax\alphafold
7301copying src\colabfold_predict.py -> build\lib\chimerax\alphafold
7302copying src\colabfold_predict_test.py -> build\lib\chimerax\alphafold
7303copying src\colorgui.py -> build\lib\chimerax\alphafold
7304copying src\contacts.py -> build\lib\chimerax\alphafold
7305copying src\database.py -> build\lib\chimerax\alphafold
7306copying src\dimers.py -> build\lib\chimerax\alphafold
7307copying src\fetch.py -> build\lib\chimerax\alphafold
7308copying src\fetch_sequences.py -> build\lib\chimerax\alphafold
7309copying src\fix_seq_titles.py -> build\lib\chimerax\alphafold
7310copying src\interfaces.py -> build\lib\chimerax\alphafold
7311copying src\match.py -> build\lib\chimerax\alphafold
7312copying src\pae.py -> build\lib\chimerax\alphafold
7313copying src\panel.py -> build\lib\chimerax\alphafold
7314copying src\predict.py -> build\lib\chimerax\alphafold
7315copying src\search.py -> build\lib\chimerax\alphafold
7316copying src\__init__.py -> build\lib\chimerax\alphafold
7317running bdist_wheel
7318installing to build\bdist.win-amd64\wheel
7319running install
7320running install_lib
7321creating build\bdist.win-amd64\wheel
7322creating build\bdist.win-amd64\wheel\chimerax
7323creating build\bdist.win-amd64\wheel\chimerax\alphafold
7324copying build\lib\chimerax\alphafold\alphafold21_predict_colab.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7325copying build\lib\chimerax\alphafold\alphafold22_predict_colab.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7326copying build\lib\chimerax\alphafold\alphafold_predict_colab.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7327copying build\lib\chimerax\alphafold\alphafold_search2_cgi.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7328copying build\lib\chimerax\alphafold\alphafold_search3_cgi.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7329copying build\lib\chimerax\alphafold\alphafold_search_cgi.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7330copying build\lib\chimerax\alphafold\blast.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7331copying build\lib\chimerax\alphafold\colabfold_predict.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7332copying build\lib\chimerax\alphafold\colabfold_predict_test.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7333copying build\lib\chimerax\alphafold\colorgui.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7334copying build\lib\chimerax\alphafold\contacts.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7335copying build\lib\chimerax\alphafold\database.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7336copying build\lib\chimerax\alphafold\dimers.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7337copying build\lib\chimerax\alphafold\fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7338copying build\lib\chimerax\alphafold\fetch_sequences.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7339copying build\lib\chimerax\alphafold\fix_seq_titles.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7340copying build\lib\chimerax\alphafold\interfaces.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7341copying build\lib\chimerax\alphafold\match.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7342copying build\lib\chimerax\alphafold\pae.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7343copying build\lib\chimerax\alphafold\panel.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7344copying build\lib\chimerax\alphafold\predict.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7345copying build\lib\chimerax\alphafold\search.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7346copying build\lib\chimerax\alphafold\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\alphafold
7347running install_egg_info
7348running egg_info
7349creating ChimeraX_AlphaFold.egg-info
7350writing ChimeraX_AlphaFold.egg-info\PKG-INFO
7351writing dependency_links to ChimeraX_AlphaFold.egg-info\dependency_links.txt
7352writing requirements to ChimeraX_AlphaFold.egg-info\requires.txt
7353writing top-level names to ChimeraX_AlphaFold.egg-info\top_level.txt
7354writing manifest file 'ChimeraX_AlphaFold.egg-info\SOURCES.txt'
7355reading manifest file 'ChimeraX_AlphaFold.egg-info\SOURCES.txt'
7356writing manifest file 'ChimeraX_AlphaFold.egg-info\SOURCES.txt'
7357Copying ChimeraX_AlphaFold.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AlphaFold-1.0.1-py3.11.egg-info
7358running install_scripts
7359creating build\bdist.win-amd64\wheel\chimerax_alphafold-1.0.1.dist-info\WHEEL
7360creating 'dist\chimerax_alphafold-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
7361adding 'chimerax/alphafold/__init__.py'
7362adding 'chimerax/alphafold/alphafold21_predict_colab.py'
7363adding 'chimerax/alphafold/alphafold22_predict_colab.py'
7364adding 'chimerax/alphafold/alphafold_predict_colab.py'
7365adding 'chimerax/alphafold/alphafold_search2_cgi.py'
7366adding 'chimerax/alphafold/alphafold_search3_cgi.py'
7367adding 'chimerax/alphafold/alphafold_search_cgi.py'
7368adding 'chimerax/alphafold/blast.py'
7369adding 'chimerax/alphafold/colabfold_predict.py'
7370adding 'chimerax/alphafold/colabfold_predict_test.py'
7371adding 'chimerax/alphafold/colorgui.py'
7372adding 'chimerax/alphafold/contacts.py'
7373adding 'chimerax/alphafold/database.py'
7374adding 'chimerax/alphafold/dimers.py'
7375adding 'chimerax/alphafold/fetch.py'
7376adding 'chimerax/alphafold/fetch_sequences.py'
7377adding 'chimerax/alphafold/fix_seq_titles.py'
7378adding 'chimerax/alphafold/interfaces.py'
7379adding 'chimerax/alphafold/match.py'
7380adding 'chimerax/alphafold/pae.py'
7381adding 'chimerax/alphafold/panel.py'
7382adding 'chimerax/alphafold/predict.py'
7383adding 'chimerax/alphafold/search.py'
7384adding 'chimerax_alphafold-1.0.1.dist-info/METADATA'
7385adding 'chimerax_alphafold-1.0.1.dist-info/WHEEL'
7386adding 'chimerax_alphafold-1.0.1.dist-info/top_level.txt'
7387adding 'chimerax_alphafold-1.0.1.dist-info/RECORD'
7388removing build\bdist.win-amd64\wheel
7389Distribution is in .\dist\ChimeraX_AlphaFold-1.0.1-py3-none-any.whl
7390INFO:
7391
7392make sync
7393make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
7394cp -av dist/*.whl ../../../build/sync
7395'dist/chimerax_alphafold-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_alphafold-1.0.1-py3-none-any.whl'
7396make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
7397make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/alphafold'
7398make -C altloc_explorer build
7399make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
7400if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
7401 echo "missing ChimeraX application's python"; exit 1; \
7402else \
7403 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
7404fi
7405INFO:
7406Executing: devel build . exit true
7407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
7408!!
7409
7410 ********************************************************************************
7411 Please consider removing the following classifiers in favor of a SPDX license expression:
7412
7413 License :: Free for non-commercial use
7414
7415 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
7416 ********************************************************************************
7417
7418!!
7419 self._finalize_license_expression()
7420running build
7421running build_py
7422creating build\lib\chimerax\altloc_explorer
7423copying src\tool.py -> build\lib\chimerax\altloc_explorer
7424copying src\__init__.py -> build\lib\chimerax\altloc_explorer
7425running bdist_wheel
7426installing to build\bdist.win-amd64\wheel
7427running install
7428running install_lib
7429creating build\bdist.win-amd64\wheel
7430creating build\bdist.win-amd64\wheel\chimerax
7431creating build\bdist.win-amd64\wheel\chimerax\altloc_explorer
7432copying build\lib\chimerax\altloc_explorer\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\altloc_explorer
7433copying build\lib\chimerax\altloc_explorer\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\altloc_explorer
7434running install_egg_info
7435running egg_info
7436creating ChimeraX_AltlocExplorer.egg-info
7437writing ChimeraX_AltlocExplorer.egg-info\PKG-INFO
7438writing dependency_links to ChimeraX_AltlocExplorer.egg-info\dependency_links.txt
7439writing requirements to ChimeraX_AltlocExplorer.egg-info\requires.txt
7440writing top-level names to ChimeraX_AltlocExplorer.egg-info\top_level.txt
7441writing manifest file 'ChimeraX_AltlocExplorer.egg-info\SOURCES.txt'
7442reading manifest file 'ChimeraX_AltlocExplorer.egg-info\SOURCES.txt'
7443writing manifest file 'ChimeraX_AltlocExplorer.egg-info\SOURCES.txt'
7444Copying ChimeraX_AltlocExplorer.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AltlocExplorer-1.1.2-py3.11.egg-info
7445running install_scripts
7446creating build\bdist.win-amd64\wheel\chimerax_altlocexplorer-1.1.2.dist-info\WHEEL
7447creating 'dist\chimerax_altlocexplorer-1.1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
7448adding 'chimerax/altloc_explorer/__init__.py'
7449adding 'chimerax/altloc_explorer/tool.py'
7450adding 'chimerax_altlocexplorer-1.1.2.dist-info/METADATA'
7451adding 'chimerax_altlocexplorer-1.1.2.dist-info/WHEEL'
7452adding 'chimerax_altlocexplorer-1.1.2.dist-info/top_level.txt'
7453adding 'chimerax_altlocexplorer-1.1.2.dist-info/RECORD'
7454removing build\bdist.win-amd64\wheel
7455Distribution is in .\dist\ChimeraX_AltlocExplorer-1.1.2-py3-none-any.whl
7456INFO:
7457
7458make sync
7459make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
7460cp -av dist/*.whl ../../../build/sync
7461'dist/chimerax_altlocexplorer-1.1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_altlocexplorer-1.1.2-py3-none-any.whl'
7462make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
7463make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/altloc_explorer'
7464make -C amber_info build
7465make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
7466if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
7467 echo "missing ChimeraX application's python"; exit 1; \
7468else \
7469 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
7470fi
7471INFO:
7472Executing: devel build . exit true
7473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
7474!!
7475
7476 ********************************************************************************
7477 Please consider removing the following classifiers in favor of a SPDX license expression:
7478
7479 License :: Free for non-commercial use
7480
7481 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
7482 ********************************************************************************
7483
7484!!
7485 self._finalize_license_expression()
7486running build
7487running build_py
7488creating build\lib\chimerax\amber_info
7489copying src\info.py -> build\lib\chimerax\amber_info
7490copying src\__init__.py -> build\lib\chimerax\amber_info
7491running bdist_wheel
7492installing to build\bdist.win-amd64\wheel
7493running install
7494running install_lib
7495creating build\bdist.win-amd64\wheel
7496creating build\bdist.win-amd64\wheel\chimerax
7497creating build\bdist.win-amd64\wheel\chimerax\amber_info
7498copying build\lib\chimerax\amber_info\info.py -> build\bdist.win-amd64\wheel\.\chimerax\amber_info
7499copying build\lib\chimerax\amber_info\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\amber_info
7500running install_egg_info
7501running egg_info
7502creating ChimeraX_AmberInfo.egg-info
7503writing ChimeraX_AmberInfo.egg-info\PKG-INFO
7504writing dependency_links to ChimeraX_AmberInfo.egg-info\dependency_links.txt
7505writing requirements to ChimeraX_AmberInfo.egg-info\requires.txt
7506writing top-level names to ChimeraX_AmberInfo.egg-info\top_level.txt
7507writing manifest file 'ChimeraX_AmberInfo.egg-info\SOURCES.txt'
7508reading manifest file 'ChimeraX_AmberInfo.egg-info\SOURCES.txt'
7509writing manifest file 'ChimeraX_AmberInfo.egg-info\SOURCES.txt'
7510Copying ChimeraX_AmberInfo.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AmberInfo-1.0-py3.11.egg-info
7511running install_scripts
7512creating build\bdist.win-amd64\wheel\chimerax_amberinfo-1.0.dist-info\WHEEL
7513creating 'dist\chimerax_amberinfo-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
7514adding 'chimerax/amber_info/__init__.py'
7515adding 'chimerax/amber_info/info.py'
7516adding 'chimerax_amberinfo-1.0.dist-info/METADATA'
7517adding 'chimerax_amberinfo-1.0.dist-info/WHEEL'
7518adding 'chimerax_amberinfo-1.0.dist-info/top_level.txt'
7519adding 'chimerax_amberinfo-1.0.dist-info/RECORD'
7520removing build\bdist.win-amd64\wheel
7521Distribution is in .\dist\ChimeraX_AmberInfo-1.0-py3-none-any.whl
7522INFO:
7523
7524make sync
7525make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
7526cp -av dist/*.whl ../../../build/sync
7527'dist/chimerax_amberinfo-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_amberinfo-1.0-py3-none-any.whl'
7528make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
7529make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/amber_info'
7530make -C aniso build
7531make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
7532if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
7533 echo "missing ChimeraX application's python"; exit 1; \
7534else \
7535 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
7536fi
7537INFO:
7538Executing: devel build . exit true
7539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
7540!!
7541
7542 ********************************************************************************
7543 Please consider removing the following classifiers in favor of a SPDX license expression:
7544
7545 License :: Free for non-commercial use
7546
7547 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
7548 ********************************************************************************
7549
7550!!
7551 self._finalize_license_expression()
7552running build
7553running build_py
7554creating build\lib\chimerax\aniso
7555copying src\cmd.py -> build\lib\chimerax\aniso
7556copying src\mgr.py -> build\lib\chimerax\aniso
7557copying src\settings.py -> build\lib\chimerax\aniso
7558copying src\tool.py -> build\lib\chimerax\aniso
7559copying src\__init__.py -> build\lib\chimerax\aniso
7560running bdist_wheel
7561installing to build\bdist.win-amd64\wheel
7562running install
7563running install_lib
7564creating build\bdist.win-amd64\wheel
7565creating build\bdist.win-amd64\wheel\chimerax
7566creating build\bdist.win-amd64\wheel\chimerax\aniso
7567copying build\lib\chimerax\aniso\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\aniso
7568copying build\lib\chimerax\aniso\mgr.py -> build\bdist.win-amd64\wheel\.\chimerax\aniso
7569copying build\lib\chimerax\aniso\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\aniso
7570copying build\lib\chimerax\aniso\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\aniso
7571copying build\lib\chimerax\aniso\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\aniso
7572running install_egg_info
7573running egg_info
7574creating ChimeraX_Aniso.egg-info
7575writing ChimeraX_Aniso.egg-info\PKG-INFO
7576writing dependency_links to ChimeraX_Aniso.egg-info\dependency_links.txt
7577writing requirements to ChimeraX_Aniso.egg-info\requires.txt
7578writing top-level names to ChimeraX_Aniso.egg-info\top_level.txt
7579writing manifest file 'ChimeraX_Aniso.egg-info\SOURCES.txt'
7580reading manifest file 'ChimeraX_Aniso.egg-info\SOURCES.txt'
7581writing manifest file 'ChimeraX_Aniso.egg-info\SOURCES.txt'
7582Copying ChimeraX_Aniso.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Aniso-1.3.2-py3.11.egg-info
7583running install_scripts
7584creating build\bdist.win-amd64\wheel\chimerax_aniso-1.3.2.dist-info\WHEEL
7585creating 'dist\chimerax_aniso-1.3.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
7586adding 'chimerax/aniso/__init__.py'
7587adding 'chimerax/aniso/cmd.py'
7588adding 'chimerax/aniso/mgr.py'
7589adding 'chimerax/aniso/settings.py'
7590adding 'chimerax/aniso/tool.py'
7591adding 'chimerax_aniso-1.3.2.dist-info/METADATA'
7592adding 'chimerax_aniso-1.3.2.dist-info/WHEEL'
7593adding 'chimerax_aniso-1.3.2.dist-info/top_level.txt'
7594adding 'chimerax_aniso-1.3.2.dist-info/RECORD'
7595removing build\bdist.win-amd64\wheel
7596Distribution is in .\dist\ChimeraX_Aniso-1.3.2-py3-none-any.whl
7597INFO:
7598
7599make sync
7600make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
7601cp -av dist/*.whl ../../../build/sync
7602'dist/chimerax_aniso-1.3.2-py3-none-any.whl' -> '../../../build/sync/chimerax_aniso-1.3.2-py3-none-any.whl'
7603make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
7604make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/aniso'
7605make -C atomic_lib build
7606make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
7607if [ -z "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe" ]; then \
7608 echo "missing ChimeraX application's python"; exit 1; \
7609else \
7610 PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel install . user false exit true noDeps true"; \
7611fi
7612INFO:
7613Executing: devel install . user false exit true noDeps true
7614PythonInstance.cpp
7615C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\pyinstance_cpp\PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7616c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7617C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\pyinstance_cpp\PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7618 Creating library src\lib\libpyinstance.lib and object src\lib\libpyinstance.exp
7619Generating code
7620Finished generating code
7621Element.cpp
7622src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7623c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7624src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7625src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
7626c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7627C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
7628C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7629C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7630C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
7631C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
7632C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7633C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7634C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
7635C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
7636C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7637C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\element_cpp\Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7638 Creating library src\lib\libelement.lib and object src\lib\libelement.exp
7639Generating code
7640Finished generating code
7641Atom.cpp
7642src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7643c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7644src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7645src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
7646c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7647C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
7648C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
7649C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
7650src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
7651c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7652src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
7653src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7654src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7655src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
7656src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
7657src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7658src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7659src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
7660src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
7661src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7662src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7663src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
7664c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7665C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
7666C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7667C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
7668C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7669C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
7670C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7671c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7672C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7673C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7674src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
7675c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7676C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
7677C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
7678c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
7679C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
7680src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
7681c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7682C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
7683C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7684C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
7685C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7686c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7687C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7688C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
7689C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7690c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7691C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7692C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7693src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
7694c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7695C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
7696C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7697C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
7698C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7699C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
7700C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7701C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
7702C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7703C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
7704atomic_cpp/atomstruct_cpp/tmpl/Atom.cpp(58): warning C4267: '=': conversion from 'size_t' to 'unsigned int', possible loss of data
7705Bond.cpp
7706src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7707c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7708src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7709src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
7710c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7711C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
7712C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
7713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
7714src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
7715c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7716src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
7717src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7718src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7719src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
7720src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
7721src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7722src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7723src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
7724src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
7725src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7726src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7727src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
7728c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7729C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
7730C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7731C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
7732C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7733C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
7734C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7735c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7736C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7737C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7738src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
7739c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7740C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
7741C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
7742c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
7743C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
7744src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
7745c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7746C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
7747C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7748C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
7749C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7750c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7751C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7752C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
7753C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7754c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7755C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7756C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7757src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
7758c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7759C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
7760C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7761C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
7762C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7763C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
7764C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7765C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
7766C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7767C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
7768CoordSet.cpp
7769src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7770c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7771src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7772src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
7773c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7774C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
7775C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
7776C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
7777src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
7778c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7779src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
7780src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7781src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7782src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
7783src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
7784src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7785src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7786src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
7787src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
7788src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7789src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7790src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
7791c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7792C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
7793C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7794C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
7795C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7796C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
7797C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7798c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7799C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7800C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7801src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
7802c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7803C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
7804C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
7805c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
7806C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
7807src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
7808c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7809C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
7810C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7811C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
7812C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7813c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7814C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7815C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
7816C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7817c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7818C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7819C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7820src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
7821c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7822C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
7823C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7824C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
7825C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7826C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
7827C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7828C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
7829C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7830C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
7831Molecule.cpp
7832src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7833c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7834src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7835src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
7836c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7837C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
7838C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
7839C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
7840src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
7841c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7842src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
7843src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7844src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7845src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
7846src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
7847src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7848src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7849src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
7850src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
7851src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7852src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7853src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
7854c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7855C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
7856C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7857C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
7858C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7859C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
7860C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7861c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7862C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7863C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7864src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
7865c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7866C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
7867C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
7868c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
7869C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
7870src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
7871c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7872C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
7873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7874C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
7875C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7876c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7877C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7878C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
7879C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7880c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7881C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7882C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7883src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
7884c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7885C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
7886C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7887C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
7888C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7889C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
7890C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7891C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
7892C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7893C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
7894Residue.cpp
7895src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7896c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7897src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7898src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
7899c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7900C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
7901C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
7902C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
7903src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
7904c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7905src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
7906src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7907src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7908src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
7909src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
7910src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7911src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7912src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
7913src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
7914src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
7915src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
7916src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
7917c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7918C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
7919C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7920C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
7921C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7922C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
7923C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7924c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7925C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
7926C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7927src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
7928c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7929C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
7930C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
7931c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
7932C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
7933src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
7934c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7935C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
7936C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7937C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
7938C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7939c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7940C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7941C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
7942C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7943c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7944C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
7945C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
7946src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
7947c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7948C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
7949C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7950C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
7951C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7952C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
7953C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7954C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
7955C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
7956C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
7957C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(44): warning C4251: 'tmpl::CondInfo::op': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
7958c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7959C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(44): warning C4251: 'tmpl::CondInfo::operand': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
7960c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7961C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(45): warning C4251: 'tmpl::CondInfo::result': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
7962C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
7963C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(52): warning C4251: 'tmpl::ConditionalTemplate::conditions': class 'std::vector<tmpl::CondInfo,std::allocator<tmpl::CondInfo>>' needs to have dll-interface to be used by clients of class 'tmpl::ConditionalTemplate'
7964C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(52): note: see declaration of 'std::vector<tmpl::CondInfo,std::allocator<tmpl::CondInfo>>'
7965C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(73): warning C4251: 'tmpl::TemplateCache::_template_dir': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
7966c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7967C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(74): warning C4251: 'tmpl::TemplateCache::_user_template_dir': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
7968c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7969C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(75): warning C4251: 'tmpl::TemplateCache::cache': class 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
7970C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(75): note: see declaration of 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>>'
7971TemplateCache.cpp
7972C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
7973c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
7974C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
7975C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(44): warning C4251: 'tmpl::CondInfo::op': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
7976c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7977C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(44): warning C4251: 'tmpl::CondInfo::operand': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
7978c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7979C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(45): warning C4251: 'tmpl::CondInfo::result': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
7980C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
7981C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(52): warning C4251: 'tmpl::ConditionalTemplate::conditions': class 'std::vector<tmpl::CondInfo,std::allocator<tmpl::CondInfo>>' needs to have dll-interface to be used by clients of class 'tmpl::ConditionalTemplate'
7982C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(52): note: see declaration of 'std::vector<tmpl::CondInfo,std::allocator<tmpl::CondInfo>>'
7983C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(73): warning C4251: 'tmpl::TemplateCache::_template_dir': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
7984c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7985C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(74): warning C4251: 'tmpl::TemplateCache::_user_template_dir': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
7986c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7987C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(75): warning C4251: 'tmpl::TemplateCache::cache': class 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<atomstruct::AtomName>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
7988C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TemplateCache.h(75): note: see declaration of 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<atomstruct::AtomName>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>>'
7989atomic_cpp/atomstruct_cpp/tmpl/TemplateCache.cpp(253): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
7990amino.cpp
7991src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
7992c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7993src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
7994src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
7995c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
7996C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
7997C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
7998C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
7999src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8000c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8001src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8002src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8003src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8004src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8005src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8006src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8007src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8008src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8009src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8010src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8011src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8012src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8013c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8014C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8015C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8016C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8017C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8018C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8019C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8020c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8021C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8022C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8023src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8024c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8025C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8026C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8027c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8028C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8029src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8030c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8031C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8032C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8033C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
8034C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8035c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8036C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8037C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8038C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8039c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8040C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8041C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8042src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8043c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8044C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8045C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8046C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8047C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8048C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8049C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8050C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8051C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8052C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8053camino.cpp
8054src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8055c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8056src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8057src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
8058c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8059C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
8060C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
8061C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
8062src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8063c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8064src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8065src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8066src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8067src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8068src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8069src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8070src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8071src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8072src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8073src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8074src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8075src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8076c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8077C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8078C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8079C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8080C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8081C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8082C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8083c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8084C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8085C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8086src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8087c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8088C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8089C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8090c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8091C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8092src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8093c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8094C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8095C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8096C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
8097C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8098c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8099C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8100C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8101C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8102c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8103C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8104C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8105src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8106c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8107C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8108C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8109C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8110C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8111C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8112C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8113C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8114C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8115C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8116findres.cpp
8117src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8118c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8119src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8120src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
8121c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8122C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
8123C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
8124C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
8125src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8126c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8127src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8128src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8129src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8130src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8131src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8132src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8133src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8134src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8135src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8136src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8137src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8138src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8139c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8140C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8141C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8142C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8143C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8144C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8145C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8146c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8147C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8148C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8149src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8150c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8151C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8152C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8153c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8154C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8155src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8156c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8157C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8158C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8159C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
8160C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8161c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8162C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8163C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8164C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8165c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8166C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8167C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8168src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8169c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8170C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8171C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8172C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8173C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8174C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8175C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8176C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8177C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8178C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8179general.cpp
8180src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8181c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8182src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8183src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
8184c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8185C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
8186C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
8187C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
8188src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8189c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8190src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8191src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8192src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8193src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8194src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8195src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8196src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8197src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8198src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8199src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8200src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8201src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8202c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8203C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8204C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8205C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8206C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8207C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8208C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8209c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8210C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8211C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8212src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8213c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8214C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8215C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8216c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8217C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8218src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8219c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8220C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8221C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8222C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
8223C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8224c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8225C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8226C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8227C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8228c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8229C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8230C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8231src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8232c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8233C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8234C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8235C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8236C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8237C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8238C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8239C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8240C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8241C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8242ions.cpp
8243src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8244c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8245src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8246src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
8247c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8248C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
8249C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
8250C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
8251src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8252c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8253src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8254src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8255src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8256src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8257src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8258src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8259src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8260src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8261src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8262src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8263src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8264src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8265c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8266C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8267C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8268C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8269C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8270C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8271C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8272c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8273C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8274C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8275src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8276c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8277C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8278C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8279c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8280C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8281src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8282c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8283C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8284C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8285C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
8286C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8287c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8288C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8289C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8290C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8291c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8292C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8293C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8294src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8295c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8296C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8297C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8298C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8299C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8300C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8301C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8302C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8303C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8304C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8305namino.cpp
8306src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8307c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8308src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8309src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
8310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8311C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
8312C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
8313C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
8314src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8315c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8316src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8317src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8318src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8319src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8320src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8321src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8322src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8323src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8324src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8325src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8326src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8327src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8328c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8329C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8330C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8331C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8332C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8333C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8334C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8335c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8336C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8337C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8338src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8339c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8340C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8341C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8342c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8343C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8344src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8345c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8346C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8347C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8348C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
8349C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8350c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8351C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8352C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8353C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8354c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8355C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8356C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8357src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8358c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8359C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8360C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8361C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8362C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8363C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8364C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8365C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8366C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8367C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8368nucleic.cpp
8369src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8370c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8371src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8372src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
8373c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8374C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
8375C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
8376C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): note: see declaration of 'std::vector<tmpl::Coord,std::allocator<tmpl::Coord>>'
8377src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8378c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8379src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8380src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8381src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8382src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8383src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8384src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8385src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8386src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8387src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8388src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8389src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8390src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8391c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8392C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8393C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8394C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8395C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8396C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\../string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8397C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8398c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8399C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8400C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8401src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8402c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8403C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8404C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8405c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8406C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8407src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8408c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8409C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8410C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8411C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): note: see declaration of 'std::map<std::string,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const std::string,std::vector<std::string,std::allocator<std::string>>>>>'
8412C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8413c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8414C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8415C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8416C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8417c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8418C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8419C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8420src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8421c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8422C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8423C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8424C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8425C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8426C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8427C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8428C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8429C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8430C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8431Microsoft (R) Library Manager Version 14.29.30152.0
8432Copyright (C) Microsoft Corporation. All rights reserved.
8433
8434Atom.cpp
8435src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8436c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8437src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8438src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8439c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8440src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8441src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8442src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8443src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8444src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8445src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8446src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8447src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8448src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8449src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8450src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8451C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
8452C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
8453C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
8454C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
8455C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
8456src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8457src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
8458c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8459C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
8460C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8461C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
8462C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8463C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
8464C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8465c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8466C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8467c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8468C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8469c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8470C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8471c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8472C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8473c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8474C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8475c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8476C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8477c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8478C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8479c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8480C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8481c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8482C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8483c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8484C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8485c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8486C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8487c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8488C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8489c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8490C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8491c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8492C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8493c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8494C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8495c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8496C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8497c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8498C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8499c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8500C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8501c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8502C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8503c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8504C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8505c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8506C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8507c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8508C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8509c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8510C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8511c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8512C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8513c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8514C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8515c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8516C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8517c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8518C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8519c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8520C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8521c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8522C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8523c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8524C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8525c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8526C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8527c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8528C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8529c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8530C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8531c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8532C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8533c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8534C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8535c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8536C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8537c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8538C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8539c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8540C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8541c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8542C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8543c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8544C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8545c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8546C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8547c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8548C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
8549C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
8550C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
8551C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
8552src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
8553c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8554C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
8555C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8556C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
8557C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8558C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
8559C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8560C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
8561C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8562C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
8563C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8564C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
8565C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8566C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
8567C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8568C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
8569C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8570c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8571C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8572C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8573c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8574C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8575c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8576C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8577C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
8578C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8579C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
8580C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8581C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8582C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
8583C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8584C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
8585C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8586C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
8587C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8588C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
8589src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
8590c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8591C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
8592C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
8593C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
8594src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
8595c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8596C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
8597C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
8598C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
8599C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
8600C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
8601src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
8602c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8603C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
8604C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8605C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
8606C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8607C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
8608C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8609C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
8610C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8611C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
8612C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8613C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
8614C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8615C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
8616C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8617C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
8618C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8619c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8620C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8621C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
8622src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
8623c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8624C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
8625C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
8626C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
8627C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
8628C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
8629C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
8630C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
8631C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8632C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8633src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
8634c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8635C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
8636C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8637C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
8638C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8639C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
8640C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8641C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8642C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8643C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8644C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8645c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8646C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8647C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
8648C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8649C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
8650C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
8651C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
8652C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8653src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
8654c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8655C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
8656C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
8657C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
8658C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
8659src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
8660c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8661C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
8662C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
8663c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8664C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
8665C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
8666C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
8667C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
8668src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
8669c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8670C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
8671src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
8672c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8673C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
8674C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8675C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
8676C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8677c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8678C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8679c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8680C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8681c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8682C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8683src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8684C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8685C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
8686C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8687src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8688C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8689src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8690C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8691src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8692C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8693src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8694C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8695C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
8696C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8697src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8698C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8699src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8700C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8701src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8702C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8703src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8704C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8705src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8706C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8707src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8708C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
8709C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
8710C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8711src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
8712c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
8714C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
8715C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
8716src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
8717c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8718C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
8719C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8720C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
8721C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8722C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8723C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8724c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8725C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
8726C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8727src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
8728c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8729C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
8730C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
8731c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
8732C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
8733src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
8734c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8735C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
8736C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8737C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
8738C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8739c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8740C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8741C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
8742C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8743c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8744C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
8745C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
8746src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
8747c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8748C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
8749C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8750C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
8751C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8752C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
8753C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8754C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
8755C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
8756C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
8757atomic_cpp/atomstruct_cpp/Atom.cpp(232): warning C4267: '=': conversion from 'size_t' to 'unsigned int', possible loss of data
8758atomic_cpp/atomstruct_cpp/Atom.cpp(266): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8759atomic_cpp/atomstruct_cpp/Atom.cpp(439): warning C4305: 'return': truncation from 'double' to 'float'
8760atomic_cpp/atomstruct_cpp/Atom.cpp(447): warning C4305: 'return': truncation from 'double' to 'float'
8761atomic_cpp/atomstruct_cpp/Atom.cpp(883): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
8762atomic_cpp/atomstruct_cpp/Atom.cpp(1178): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
8763atomic_cpp/atomstruct_cpp/Atom.cpp(1182): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
8764atomic_cpp/atomstruct_cpp/Atom.cpp(1259): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
8765atomic_cpp/atomstruct_cpp/Atom.cpp(1260): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
8766atomic_cpp/atomstruct_cpp/Atom.cpp(1295): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
8767atomic_cpp/atomstruct_cpp/Atom.cpp(1300): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
8768atomic_cpp/atomstruct_cpp/Atom.cpp(1301): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
8769atomic_cpp/atomstruct_cpp/Atom.cpp(1302): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
8770AtomTypes.cpp
8771src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
8772c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8773src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
8774src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
8775c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8776src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
8777src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8778src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8779src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
8780src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
8781src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8782src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8783src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
8784src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8785src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
8786src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
8787C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
8788C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
8789C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
8790C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
8791src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
8792c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8793C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
8794C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8795C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
8796C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8797C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
8798C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8799C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
8800C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8801C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
8802C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8803C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
8804C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8805C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
8806C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8807C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
8808C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
8809c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8810C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8811C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8812c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8813C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8814c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8815C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8816C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
8817C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
8818C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
8819C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8820C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
8821C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
8822C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
8823C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
8824C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
8825src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
8826src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
8827c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8828C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
8829C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8830C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
8831C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8832C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
8833C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8834c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8835C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8836c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8837C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8838c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8839C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8840c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8841C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8842c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8843C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8844c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8845C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8846c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8847C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8848c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8849C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8850c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8851C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8852c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8853C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8854c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8855C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8856c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8857C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8858c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8859C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8860c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8861C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8862c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8863C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8864c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8865C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8866c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8867C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8868c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8869C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8870c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8871C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8872c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8874c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8875C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8876c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8877C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8878c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8879C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8880c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8881C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8882c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8883C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8884c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8885C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8886c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8887C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8888c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8889C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8890c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8891C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8892c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8893C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8894c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8895C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8896c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8897C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8898c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8899C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8900c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8901C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8902c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8903C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8904c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8905C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8906c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8907C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8908c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8909C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8910c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8911C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8912c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8913C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8914c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8915C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
8916c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8917C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8918C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
8919C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8920C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
8921C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8922C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
8923C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
8924C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
8925src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
8926c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8927C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
8928C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
8929C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
8930src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
8931c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8932C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
8933C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
8934C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
8935C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
8936C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
8937src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
8938c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8939C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
8940C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8941C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
8942C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8943C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
8944C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8945C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
8946C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8947C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
8948C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8949C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
8950C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8951C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
8952C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8953C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
8954C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8955c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8956C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
8957C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
8958src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
8959c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8960C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
8961C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
8962C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
8963C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
8964C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
8965C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
8966C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
8967C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8968C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8969src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
8970c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8971C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
8972C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8973C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
8974C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8975C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
8976C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8977C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8978C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8979C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
8980C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8981c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8982C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8983C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
8984C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
8985C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
8986C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
8987C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
8988C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
8989src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
8990c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8991C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
8992C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
8993C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
8994C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
8995src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
8996c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
8997C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
8998C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
8999c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9000C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
9001C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
9002C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
9003C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
9004src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
9005c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9006C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
9007src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
9008c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9009C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
9010C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9011C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9012C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9013c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9014C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9015c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9016C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9017c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9018C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9019src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9020C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9021C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
9022C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9023src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9024C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9025src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9026C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9027src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9028C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9029src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9030C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9031C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
9032C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9033src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9034C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9035src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9036C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9037src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9038C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9039src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9040C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9041src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9042C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9043src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9044C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9045C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
9046C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9047C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
9048c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
9049C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
9050atomic_cpp/atomstruct_cpp/AtomTypes.cpp(340): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
9051atomic_cpp/atomstruct_cpp/AtomTypes.cpp(357): warning C4244: 'initializing': conversion from '__int64' to 'int', possible loss of data
9052atomic_cpp/atomstruct_cpp/AtomTypes.cpp(378): warning C4244: 'argument': conversion from '__int64' to 'const int', possible loss of data
9053atomic_cpp/atomstruct_cpp/AtomTypes.cpp(384): warning C4244: '+=': conversion from 'atomstruct::Real' to 'float', possible loss of data
9054atomic_cpp/atomstruct_cpp/AtomTypes.cpp(556): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
9055atomic_cpp/atomstruct_cpp/AtomTypes.cpp(1486): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
9056atomic_cpp/atomstruct_cpp/AtomTypes.cpp(1570): warning C4244: 'initializing': conversion from '__int64' to 'unsigned int', possible loss of data
9057atomic_cpp/atomstruct_cpp/AtomTypes.cpp(1753): warning C4244: '+=': conversion from 'atomstruct::Real' to 'float', possible loss of data
9058atomic_cpp/atomstruct_cpp/AtomTypes.cpp(1969): warning C4244: '=': conversion from 'atomstruct::Real' to 'float', possible loss of data
9059atomic_cpp/atomstruct_cpp/AtomTypes.cpp(2353): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
9060atomic_cpp/atomstruct_cpp/AtomTypes.cpp(2358): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
9061atomic_cpp/atomstruct_cpp/AtomTypes.cpp(2361): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
9062atomic_cpp/atomstruct_cpp/AtomTypes.cpp(2363): warning C4267: '=': conversion from 'size_t' to 'unsigned int', possible loss of data
9063AtomicStructure.cpp
9064src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
9065c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9066src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
9067src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
9068c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9069src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
9070src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9071src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9072src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
9073src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
9074src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9075src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9076src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
9077src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9078src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9079src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9080C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9081C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9082C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9083C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9084C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9085src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9086src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
9087c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9088C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
9089C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9090C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
9091C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9092C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
9093C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9094c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9095C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9096c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9097C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9098c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9099C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9100c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9101C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9102c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9103C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9104c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9105C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9106c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9107C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9108c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9109C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9110c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9111C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9112c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9113C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9114c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9115C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9116c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9117C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9118c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9119C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9120c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9121C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9122c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9123C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9124c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9125C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9126c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9127C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9128c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9129C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9130c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9131C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9132c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9133C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9134c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9135C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9136c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9137C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9138c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9139C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9140c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9141C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9142c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9143C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9144c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9145C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9146c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9147C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9148c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9149C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9150c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9151C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9152c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9153C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9154c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9155C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9156c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9157C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9158c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9159C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9160c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9161C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9162c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9163C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9164c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9165C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9166c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9167C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9168c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9169C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9170c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9171C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9172c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9173C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9174c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9175C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9176c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9177C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
9178C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
9179C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
9180C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
9181src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
9182c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9183C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
9184C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9185C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9186C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9187C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9188C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9189C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9190C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9191C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
9192C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9193C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
9194C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9195C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
9196C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9197C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
9198C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9199c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9200C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9201C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9202c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9203C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9204c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9205C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9206C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
9207C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9208C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
9209C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9210C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9211C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
9212C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9213C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
9214C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9215C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
9216C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9217C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
9218src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
9219c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9220C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
9221C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
9222C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
9223src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
9224c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9225C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
9226C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
9227C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
9228C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
9229C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
9230src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
9231c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9232C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
9233C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9234C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9235C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9236C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
9237C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9238C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
9239C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9240C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
9241C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9242C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
9243C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9244C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
9245C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9246C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
9247C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9248c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9249C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9250C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
9251src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
9252c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9253C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
9254C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9255C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
9256C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9257C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
9258C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9259C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
9260C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9261C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9262src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
9263c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9264C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
9265C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9266C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
9267C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9268C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
9269C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9270C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
9271C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9272C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
9273C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9274c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9275C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9276C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9277C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9278C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
9279C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
9280C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
9281C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9282src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
9283c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9284C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
9285C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
9286C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
9287C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
9288src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
9289c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9290C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
9291C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
9292c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9293C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
9294C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
9295C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
9296C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
9297src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
9298c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9299C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
9300src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
9301c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9302C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
9303C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9304C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9305C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9306c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9307C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9308c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9309C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9311C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9312src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9313C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9314C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
9315C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9316src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9317C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9318src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9319C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9320src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9321C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9322src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9323C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9324C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
9325C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9326src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9327C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9328src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9329C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9330src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9331C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9332src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9333C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9334src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9335C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9336src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9337C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9338C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
9339C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9340C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(64): warning C4251: 'atomstruct::MatchMap::_pos_to_res': class 'std::map<atomstruct::StructureSeq::SeqPos,atomstruct::Residue *,std::less<atomstruct::StructureSeq::SeqPos>,std::allocator<std::pair<const atomstruct::StructureSeq::SeqPos,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::MatchMap'
9341C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(60): note: see declaration of 'std::map<atomstruct::StructureSeq::SeqPos,atomstruct::Residue *,std::less<atomstruct::StructureSeq::SeqPos>,std::allocator<std::pair<const atomstruct::StructureSeq::SeqPos,atomstruct::Residue *>>>'
9342C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(65): warning C4251: 'atomstruct::MatchMap::_res_to_pos': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::MatchMap'
9343C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
9344C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(85): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure'
9345c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
9346C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(85): note: see declaration of 'atomstruct::SA_AssocFailure'
9347atomic_cpp/atomstruct_cpp/AtomicStructure.cpp(415): warning C4267: '+=': conversion from 'size_t' to 'unsigned int', possible loss of data
9348atomic_cpp/atomstruct_cpp/AtomicStructure.cpp(436): warning C4267: '+=': conversion from 'size_t' to 'unsigned int', possible loss of data
9349atomic_cpp/atomstruct_cpp/AtomicStructure.cpp(457): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
9350Bond.cpp
9351src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
9352c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9353src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
9354src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
9355c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9356src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
9357src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9358src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9359src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
9360src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
9361src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9362src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9363src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
9364src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9365src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9366src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9367C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9368C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9369C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9370C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9371C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9372src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9373src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
9374c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9375C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
9376C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9377C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
9378C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9379C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
9380C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9381c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9382C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9383c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9384C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9385c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9386C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9387c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9388C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9389c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9390C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9391c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9392C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9393c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9394C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9395c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9396C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9397c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9398C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9399c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9400C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9401c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9402C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9403c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9404C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9405c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9406C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9407c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9408C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9409c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9410C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9411c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9412C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9413c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9414C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9415c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9416C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9417c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9418C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9419c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9420C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9421c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9422C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9423c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9424C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9425c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9426C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9427c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9428C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9429c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9430C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9431c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9432C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9433c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9434C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9435c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9436C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9437c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9438C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9439c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9440C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9441c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9442C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9443c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9444C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9445c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9446C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9447c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9448C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9449c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9450C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9451c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9452C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9453c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9454C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9455c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9456C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9457c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9458C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9459c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9460C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9461c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9462C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9463c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9464C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
9465C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
9466C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
9467C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
9468src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
9469c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9470C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
9471C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9472C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9473C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9474C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9475C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9476C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9477C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9478C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
9479C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9480C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
9481C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9482C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
9483C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9484C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
9485C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9486c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9487C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9488C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9489c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9490C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9491c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9492C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9493C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
9494C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9495C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
9496C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9497C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9498C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
9499C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9500C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
9501C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9502C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
9503C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9504C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
9505src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
9506c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9507C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
9508C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
9509C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
9510src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
9511c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9512C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
9513C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
9514C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
9515C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
9516C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
9517src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
9518c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9519C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
9520C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9521C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9522C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9523C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
9524C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9525C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
9526C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9527C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
9528C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9529C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
9530C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9531C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
9532C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9533C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
9534C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9535c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9536C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9537C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
9538src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
9539c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9540C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
9541C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9542C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
9543C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9544C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
9545C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9546C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
9547C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9548C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9549src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
9550c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9551C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
9552C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9553C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
9554C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9555C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
9556C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9557C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
9558C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9559C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
9560C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9561c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9562C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9563C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9564C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
9565C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
9566C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
9567C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
9568C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9569src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
9570c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9571C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
9572C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
9573C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
9574C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
9575src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
9576c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9577C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
9578C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
9579c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9580C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
9581C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
9582C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
9583C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
9584src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
9585c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9586C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
9587src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
9588c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9589C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
9590C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9591C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9592C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9593c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9594C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9595c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9596C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9597c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9598C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9599src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9600C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9601C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
9602C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9603src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9604C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9605src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9606C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9607src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9608C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9609src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9610C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9611C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
9612C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9613src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9614C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9615src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9616C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9617src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9618C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9619src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9620C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9621src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9622C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9623src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9624C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
9625C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
9626C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9627Chain.cpp
9628C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
9629C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
9630C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
9631C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
9632src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
9633c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9634src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
9635src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
9636c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9637C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
9638C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9639C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9640C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9641C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9642C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9643C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
9644C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9645C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
9646C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9647C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
9648C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9649C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
9650C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9651C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
9652C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
9653c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9654C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9655C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9656c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9657C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9658c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9659C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9660C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
9661C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
9662C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
9663C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9664C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9665C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9666C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9667C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9668C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9669C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
9670src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
9671c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9672C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
9673C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9674C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
9675C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9676C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
9677C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9678c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9679C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9680c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9681C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9682c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9683C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9684c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9685C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9686c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9687C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9688c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9689C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9690c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9691C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9692c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9693C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9694c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9695C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9696c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9697C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9698c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9699C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9700c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9701C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9702c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9703C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9704c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9705C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9706c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9707C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9708c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9709C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9710c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9711C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9712c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9714c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9715C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9716c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9717C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9718c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9719C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9720c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9721C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9722c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9723C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9724c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9725C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9726c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9727C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9728c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9729C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9730c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9731C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9732c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9733C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9734c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9735C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9736c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9737C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9738c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9739C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9740c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9741C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9742c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9743C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9744c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9745C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9746c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9747C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9748c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9749C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9750c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9751C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9752c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9753C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9754c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9755C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9756c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9757C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9758c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9759C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9760c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9761src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
9762c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9763src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
9764src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9765src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9766src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
9767src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
9768src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9769src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9770src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'element::Element'
9771C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
9772src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9773src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9774C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9775C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
9776C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9777C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
9778C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9779C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
9780C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
9781C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
9782src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
9783c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9784C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
9785C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<atomstruct::ResName>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
9786C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<atomstruct::ResName>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
9787src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
9788c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9789C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
9790C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
9791C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
9792C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
9793C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
9794src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
9795c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9796C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
9797C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9798C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
9799C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9800C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
9801C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9802C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
9803C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9804C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>'
9805C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9806C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
9807C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9808C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
9809C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9810C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
9811C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9812c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9813C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
9814C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>'
9815src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
9816c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9817C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
9818C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9819C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
9820C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9821C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
9822C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
9823C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
9824C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9825C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
9826ChangeTracker.cpp
9827src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
9828c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9829src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
9830C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9831C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9832C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9833C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9834C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9835C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9836src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
9837c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9838C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
9839C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9840C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
9841C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9842C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
9843C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9844c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9845C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9846c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9847C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9848c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9849C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9850c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9851C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9852c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9853C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9854c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9855C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9856c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9857C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9858c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9859C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9860c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9861C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9862c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9863C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9864c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9865C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9866c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9867C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9868c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9869C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9870c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9871C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9872c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9874c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9875C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9876c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9877C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9878c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9879C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9880c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9881C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9882c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9883C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9884c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9885C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9886c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9887C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9888c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9889C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9890c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9891C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9892c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9893C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9894c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9895C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9896c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9897C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9898c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9899C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9900c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9901C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9902c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9903C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9904c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9905C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9906c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9907C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9908c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9909C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9910c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9911C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9912c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9913C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9914c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9915C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9916c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9917C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9918c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9919C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9920c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9921C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9922c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9923C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9924c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9925C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9926c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9927CompSS.cpp
9928src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
9929c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9930src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
9931src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
9932c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9933src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
9934src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9935src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9936src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
9937src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
9938src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9939src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9940src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
9941src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9942src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
9943src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
9944C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9945C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9946C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9947C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
9948C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
9949src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
9950src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
9951c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9952C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
9953C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9954C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
9955C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9956C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
9957C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9958c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9959C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9960c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9961C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9962c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9963C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9964c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9965C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9966c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9967C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9968c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9969C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9970c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9971C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9972c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9973C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9974c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9975C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9976c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9977C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9978c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9979C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9980c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9981C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9982c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9983C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9984c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9985C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9986c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9987C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9988c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9989C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9990c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9991C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9992c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9993C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9994c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9995C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9996c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9997C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
9998c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
9999C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10000c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10001C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10002c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10003C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10004c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10005C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10006c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10007C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10008c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10009C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10010c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10011C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10012c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10013C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10014c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10015C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10016c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10017C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10018c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10019C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10020c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10021C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10022c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10023C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10024c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10025C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10026c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10027C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10028c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10029C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10030c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10031C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10032c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10033C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10034c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10035C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10036c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10037C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10038c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10039C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10040c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10041C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10042C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
10043C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10044C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
10045src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
10046c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10047C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
10048C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10049C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10050C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10051C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10052C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10053C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10054C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10055C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10056C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10057C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10058C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10059C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10060C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10061C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10062C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10063c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10064C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10065C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10066c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10067C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10068c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10069C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10070C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
10071C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10072C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10073C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10074C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10075C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
10076C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10077C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
10078C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10079C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
10080C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10081C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
10082src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
10083c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10084C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
10085C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
10086C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
10087src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
10088c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10089C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
10090C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10091C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
10092C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10093C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
10094src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
10095c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10096C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
10097C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10098C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10099C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10100C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10101C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10102C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
10103C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10104C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
10105C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10106C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10107C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10108C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
10109C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10110C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
10111C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10112c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10113C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10114C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
10115src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
10116c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10117C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
10118C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10119C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
10120C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10121C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10122C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10123C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10124C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10125C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10126src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
10127c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10128C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
10129C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10130C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
10131C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10132C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10133C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10134C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10135C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10136C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10137C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10138c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10139C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10140C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10141C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10142C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
10143C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
10144C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
10145C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10146src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
10147c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10148C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
10149C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10150C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10151C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10152c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10153C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10154c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10155C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10156c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10157C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10158src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10159C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10160C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
10161C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10162src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10163C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10164src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10165C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10166src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10167C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10168src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10169C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10170C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
10171C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10172src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10173C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10174src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10175C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10176src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10177C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10178src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10179C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10180src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10181C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10182src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10183C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10184C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
10185C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10186src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
10187c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10188C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
10189C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
10190C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
10191C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10192C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\search.h(77): warning C4251: 'atomstruct::AtomSearchTree::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::AtomSearchTree'
10193C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10194atomic_cpp/atomstruct_cpp/CompSS.cpp(164): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10195atomic_cpp/atomstruct_cpp/CompSS.cpp(265): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10196atomic_cpp/atomstruct_cpp/CompSS.cpp(285): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10197atomic_cpp/atomstruct_cpp/CompSS.cpp(302): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10198atomic_cpp/atomstruct_cpp/CompSS.cpp(454): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10199atomic_cpp/atomstruct_cpp/CompSS.cpp(467): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10200atomic_cpp/atomstruct_cpp/CompSS.cpp(733): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10201atomic_cpp/atomstruct_cpp/CompSS.cpp(818): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10202CoordSet.cpp
10203src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
10204c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10205src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
10206src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
10207c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10208src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
10209src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10210src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10211src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
10212src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
10213src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10214src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10215src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
10216src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10217src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10218src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10219C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10220C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10221C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10222C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10223C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10224src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10225src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
10226c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10227C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
10228C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10229C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
10230C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10231C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
10232C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10233c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10234C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10235c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10236C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10237c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10238C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10239c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10240C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10241c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10242C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10243c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10244C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10245c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10246C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10247c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10248C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10249c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10250C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10251c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10252C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10253c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10254C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10255c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10256C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10257c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10258C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10259c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10260C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10261c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10262C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10263c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10264C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10265c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10266C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10267c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10268C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10269c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10270C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10271c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10272C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10273c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10274C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10275c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10276C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10277c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10278C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10279c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10280C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10281c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10282C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10283c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10284C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10285c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10286C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10287c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10288C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10289c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10290C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10291c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10292C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10293c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10294C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10295c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10296C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10297c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10298C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10299c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10300C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10301c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10302C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10303c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10304C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10305c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10306C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10307c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10308C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10309c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10310C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10311c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10312C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10313c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10314C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10315c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10316C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10317C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
10318C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10319C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
10320src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
10321c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10322C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
10323C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10324C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10325C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10326C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10327C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10328C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10329C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10330C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10331C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10332C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10333C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10334C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10335C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10336C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10337C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10338c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10339C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10340C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10341c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10342C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10343c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10344C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10345C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
10346C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10347C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10348C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10349C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10350C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
10351C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10352C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
10353C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10354C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
10355C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10356C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
10357src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
10358c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10359C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
10360C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
10361C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
10362src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
10363c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10364C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
10365C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10366C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
10367C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10368C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
10369src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
10370c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10371C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
10372C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10373C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10374C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10375C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10376C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10377C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
10378C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10379C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
10380C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10381C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10382C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10383C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
10384C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10385C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
10386C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10387c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10388C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10389C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
10390src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
10391c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10392C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
10393C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10394C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
10395C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10396C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10397C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10398C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10399C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10400C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10401src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
10402c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10403C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
10404C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10405C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
10406C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10407C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10408C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10409C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10410C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10411C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10412C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10413c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10414C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10415C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10416C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10417C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
10418C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
10419C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
10420C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10421atomic_cpp/atomstruct_cpp/CoordSet.cpp(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10422atomic_cpp/atomstruct_cpp/CoordSet.cpp(131): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10423atomic_cpp/atomstruct_cpp/CoordSet.cpp(136): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10424atomic_cpp/atomstruct_cpp/CoordSet.cpp(139): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10425atomic_cpp/atomstruct_cpp/CoordSet.cpp(144): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10426atomic_cpp/atomstruct_cpp/CoordSet.cpp(147): warning C4244: '=': conversion from 'atomstruct::Real' to 'float', possible loss of data
10427atomic_cpp/atomstruct_cpp/CoordSet.cpp(148): warning C4244: '=': conversion from 'atomstruct::Real' to 'float', possible loss of data
10428atomic_cpp/atomstruct_cpp/CoordSet.cpp(149): warning C4244: '=': conversion from 'atomstruct::Real' to 'float', possible loss of data
10429MolResId.cpp
10430src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
10431c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10432src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
10433C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10434C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10435C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10436C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10437C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10438C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10439src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
10440c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10441C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
10442C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10443C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
10444C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10445C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
10446C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10447c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10448C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10449c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10450C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10451c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10452C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10453c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10454C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10455c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10456C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10457c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10458C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10459c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10460C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10461c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10462C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10463c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10464C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10465c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10466C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10467c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10468C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10469c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10470C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10471c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10472C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10473c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10474C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10475c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10476C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10477c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10478C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10479c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10480C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10481c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10482C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10483c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10484C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10485c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10486C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10487c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10488C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10489c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10490C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10491c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10492C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10493c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10494C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10495c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10496C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10497c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10498C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10499c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10500C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10501c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10502C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10503c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10504C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10505c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10506C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10507c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10508C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10509c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10510C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10511c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10512C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10513c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10514C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10515c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10516C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10517c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10518C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10519c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10520C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10521c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10522C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10523c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10524C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10525c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10526C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10527c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10528C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10529c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10530src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
10531c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10532C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
10533C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10534C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10535C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10536c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10537C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10538c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10539C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10540c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10541C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10542C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10543C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10544C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
10545C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10546C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10547C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10548C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10549C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10550C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10551C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10552C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10553C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10554C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
10555C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10556C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10557C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10558C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10559C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10560C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10561C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10562C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10563C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10564C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10565C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10566C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10567C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
10568C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>'
10569C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10570src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
10571c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10572src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
10573src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10574src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10575src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
10576src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
10577src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10578src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10579src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
10580C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10581src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10582src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10583C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10584C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
10585C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10586C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
10587src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
10588c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10589C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
10590C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10591C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
10592C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10593C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
10594C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10595C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
10596C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10597C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10598C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10599C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10600C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10601C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10602C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10603C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10604C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10605c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10606C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10607C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10608c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10609C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10610c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10611C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10612C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
10613C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10614C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10615C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10616C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10617C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
10618C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10619C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
10620C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10621C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
10622C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10623C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
10624src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
10625c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10626C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
10627C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
10628C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
10629src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
10630c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10631C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
10632C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10633C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
10634C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10635C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
10636src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
10637c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10638C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
10639C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10640C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10641C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10642C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10643C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10644C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
10645C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10646C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
10647C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10648C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10649C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10650C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
10651C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10652C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
10653C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10654c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10655C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10656C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
10657src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
10658c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10659C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
10660C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10661C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
10662C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10663C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10664C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10665C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10666C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10667C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10668src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
10669c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10670C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
10671C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10672C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
10673C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10674C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10675C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10676C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10677C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10678C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10679C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10680c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10681C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10682C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10683C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10684C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
10685C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
10686C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
10687C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10688src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
10689c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10690C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
10691C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
10692C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
10693C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10694C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
10695c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10696PBGroup.cpp
10697src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
10698c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10699src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
10700src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
10701c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10702src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
10703src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10704src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10705src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
10706src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
10707src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10708src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10709src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
10710src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10711src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10712src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10714C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10715C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10716C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10717C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10718src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10719src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
10720c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10721C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
10722C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10723C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
10724C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10725C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
10726C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10727c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10728C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10729c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10730C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10731c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10732C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10733c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10734C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10735c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10736C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10737c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10738C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10739c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10740C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10741c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10742C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10743c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10744C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10745c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10746C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10747c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10748C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10749c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10750C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10751c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10752C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10753c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10754C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10755c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10756C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10757c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10758C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10759c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10760C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10761c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10762C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10763c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10764C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10765c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10766C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10767c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10768C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10769c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10770C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10771c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10772C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10773c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10774C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10775c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10776C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10777c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10778C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10779c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10780C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10781c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10782C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10783c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10784C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10785c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10786C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10787c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10788C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10789c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10790C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10791c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10792C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10793c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10794C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10795c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10796C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10797c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10798C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10799c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10800C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10801c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10802C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10803c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10804C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10805c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10806C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10807c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10808C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
10809c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10810C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10811C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
10812C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10813C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
10814src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
10815c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10816C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
10817C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10818C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10819C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10820C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10821C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10822C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10823C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10824C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10825C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10826C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10827C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10828C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10829C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10830C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10831C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10832c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10833C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10834C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10835c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10836C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10837c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10838C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10839C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
10840C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10841C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10842C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10843C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10844C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
10845C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10846C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
10847C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10848C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
10849C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
10850C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
10851src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
10852c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10853C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
10854C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
10855C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
10856src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
10857c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10858C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
10859C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10860C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
10861C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
10862C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
10863src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
10864c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10865C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
10866C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10867C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10868C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10869C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10870C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10871C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
10872C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
10874C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10875C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10876C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10877C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
10878C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10879C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
10880C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10881c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10882C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
10883C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
10884src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
10885c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10886C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
10887C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10888C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
10889C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10890C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10891C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
10892C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
10893C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10894C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10895src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
10896c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10897C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
10898C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10899C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
10900C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10901C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
10902C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10903C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10904C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10905C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
10906C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10907c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10908C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10909C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
10910C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
10911C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
10912C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
10913C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
10914C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10915src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
10916c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10917C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
10918C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
10919c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10920C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
10921C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
10922C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
10923C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
10924src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
10925c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10926C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
10927atomic_cpp/atomstruct_cpp/PBGroup.cpp(290): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10928atomic_cpp/atomstruct_cpp/PBGroup.cpp(298): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10929atomic_cpp/atomstruct_cpp/PBGroup.cpp(307): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
10930atomic_cpp/atomstruct_cpp/PBGroup.cpp(315): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10931atomic_cpp/atomstruct_cpp/PBGroup.cpp(321): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10932atomic_cpp/atomstruct_cpp/PBGroup.cpp(324): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
10933atomic_cpp/atomstruct_cpp/PBGroup.cpp(332): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10934atomic_cpp/atomstruct_cpp/PBGroup.cpp(334): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
10935atomic_cpp/atomstruct_cpp/PBGroup.cpp(402): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10936atomic_cpp/atomstruct_cpp/PBGroup.cpp(407): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10937atomic_cpp/atomstruct_cpp/PBGroup.cpp(408): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10938atomic_cpp/atomstruct_cpp/PBGroup.cpp(421): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
10939atomic_cpp/atomstruct_cpp/PBGroup.cpp(433): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10940atomic_cpp/atomstruct_cpp/PBGroup.cpp(446): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
10941PBManager.cpp
10942C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10943C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
10944C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
10945C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
10946src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
10947c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10948src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
10949src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
10950c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10951src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
10952src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10953src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10954src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
10955src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
10956src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10957src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10958src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
10959src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10960src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
10961src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
10962src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
10963c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10964C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
10965C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10966C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10967C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10968C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10969C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10970C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
10971C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10972C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10973C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10974C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
10975C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10976C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10977C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10978C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
10979C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
10980c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10981C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10982C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10983c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10984C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10985c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10986C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10987C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
10988C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
10989C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
10990C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
10991C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10992C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10993C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10994C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
10995C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
10996src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
10997src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
10998c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
10999C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
11000C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11001C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
11002C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11003C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
11004C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11005c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11006C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11007c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11008C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11009c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11010C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11011c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11012C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11013c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11014C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11015c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11016C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11017c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11018C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11019c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11020C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11021c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11022C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11023c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11024C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11025c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11026C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11027c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11028C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11029c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11030C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11031c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11032C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11033c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11034C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11035c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11036C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11037c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11038C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11039c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11040C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11041c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11042C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11043c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11044C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11045c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11046C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11047c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11048C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11049c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11050C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11051c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11052C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11053c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11054C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11055c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11056C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11057c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11058C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11059c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11060C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11061c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11062C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11063c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11064C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11065c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11066C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11067c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11068C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11069c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11070C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11071c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11072C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11073c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11074C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11075c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11076C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11077c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11078C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11079c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11080C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11081c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11082C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11083c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11084C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11085c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11086C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11087c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11088C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11089C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
11090C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11091C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
11092C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11093C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
11094C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11095C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
11096src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
11097c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11098C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
11099C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
11100C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
11101src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
11102c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11103C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
11104C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11105C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
11106C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11107C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
11108src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
11109c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11110C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
11111C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11112C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11113C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11114C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11115C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11116C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
11117C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11118C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11119C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11120C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
11121C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11122C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
11123C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11124C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
11125C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11126c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11127C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11128C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11129src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
11130c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11131C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
11132C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11133C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
11134C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11135C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11136C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11137C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11138C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11139C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11140src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
11141c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11142C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
11143C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
11144c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11145C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
11146C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
11147C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
11148C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
11149src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
11150c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11151C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
11152C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11153C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
11154C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11155C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11156C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11157C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11158C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11159C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11160C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11161c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11162C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11163C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11164C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11165C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
11166C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
11167C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
11168C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11169src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
11170c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11171C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
11172atomic_cpp/atomstruct_cpp/PBManager.cpp(158): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
11173Point.cpp
11174Pseudobond.cpp
11175src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
11176c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11177src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
11178src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
11179c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11180src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
11181src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11182src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11183src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
11184src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
11185src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11186src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11187src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
11188src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11189src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11190src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11191C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11192C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11193C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11194C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11195C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11196src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11197src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
11198c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11199C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
11200C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11201C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
11202C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11203C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
11204C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11205c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11206C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11207c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11208C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11209c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11210C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11211c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11212C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11213c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11214C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11215c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11216C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11217c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11218C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11219c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11220C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11221c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11222C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11223c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11224C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11225c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11226C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11227c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11228C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11229c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11230C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11231c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11232C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11233c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11234C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11235c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11236C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11237c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11238C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11239c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11240C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11241c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11242C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11243c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11244C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11245c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11246C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11247c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11248C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11249c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11250C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11251c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11252C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11253c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11254C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11255c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11256C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11257c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11258C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11259c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11260C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11261c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11262C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11263c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11264C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11265c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11266C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11267c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11268C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11269c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11270C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11271c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11272C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11273c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11274C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11275c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11276C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11277c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11278C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11279c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11280C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11281c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11282C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11283c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11284C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11285c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11286C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11287c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11288C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11289C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
11290C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11291C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
11292src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
11293c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11294C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
11295C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11296C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11297C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11298C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11299C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11300C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11301C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11302C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
11303C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11304C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
11305C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11306C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
11307C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11308C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
11309C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11311C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11312C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11313c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11314C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11315c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11316C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11317C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
11318C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11319C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
11320C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11321C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11322C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
11323C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11324C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
11325C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11326C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
11327C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11328C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
11329src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
11330c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11331C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
11332C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
11333C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
11334src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
11335c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11336C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
11337C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11338C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
11339C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11340C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
11341src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
11342c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11343C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
11344C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11345C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11346C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11347C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11348C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11349C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
11350C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11351C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11352C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11353C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
11354C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11355C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
11356C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11357C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
11358C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11359c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11360C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11361C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11362src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
11363c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11364C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
11365C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11366C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
11367C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11368C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11369C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11370C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11371C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11372C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11373src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
11374c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11375C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
11376C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11377C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
11378C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11379C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11380C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11381C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11382C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11383C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11384C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11385c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11386C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11387C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11388C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11389C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
11390C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
11391C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
11392C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11393src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
11394c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11395C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
11396C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
11397c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11398C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
11399C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
11400C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
11401C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
11402src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
11403c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11404C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
11405atomic_cpp/atomstruct_cpp/Pseudobond.cpp(43): warning C4305: '=': truncation from 'double' to 'float'
11406Residue.cpp
11407src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
11408c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11409src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
11410src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
11411c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11412src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
11413src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11414src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11415src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
11416src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
11417src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11418src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11419src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
11420src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11421src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11422src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11423C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11424C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11425C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11426C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11427C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11428src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11429src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
11430c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11431C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
11432C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11433C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
11434C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11435C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
11436C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11437c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11438C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11439c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11440C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11441c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11442C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11443c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11444C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11445c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11446C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11447c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11448C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11449c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11450C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11451c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11452C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11453c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11454C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11455c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11456C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11457c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11458C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11459c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11460C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11461c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11462C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11463c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11464C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11465c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11466C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11467c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11468C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11469c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11470C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11471c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11472C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11473c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11474C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11475c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11476C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11477c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11478C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11479c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11480C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11481c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11482C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11483c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11484C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11485c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11486C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11487c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11488C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11489c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11490C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11491c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11492C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11493c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11494C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11495c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11496C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11497c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11498C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11499c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11500C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11501c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11502C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11503c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11504C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11505c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11506C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11507c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11508C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11509c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11510C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11511c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11512C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11513c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11514C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11515c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11516C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11517c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11518C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11519c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11520C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11521C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
11522C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11523C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
11524src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
11525c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11526C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
11527C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11528C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11529C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11530C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11531C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11532C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11533C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11534C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
11535C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11536C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
11537C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11538C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
11539C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11540C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
11541C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11542c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11543C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11544C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11545c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11546C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11547c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11548C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11549C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
11550C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11551C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
11552C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11553C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11554C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
11555C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11556C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
11557C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11558C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
11559C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11560C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
11561src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
11562c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11563C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
11564C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
11565C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
11566src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
11567c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11568C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
11569C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11570C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
11571C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11572C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
11573src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
11574c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11575C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
11576C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11577C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11578C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11579C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11580C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11581C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
11582C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11583C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11584C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11585C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
11586C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11587C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
11588C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11589C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
11590C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11591c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11592C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11593C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11594src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
11595c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11596C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
11597C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11598C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
11599C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11600C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11601C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11602C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11603C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11604C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11605src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
11606c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11607C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
11608C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11609C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
11610C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11611C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11612C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11613C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11614C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11615C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11616C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11617c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11618C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11619C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11620C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11621C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
11622C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
11623C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
11624C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11625src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
11626c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11627C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
11628C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
11629C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
11630C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
11631src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
11632c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11633C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
11634C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
11635c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11636C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
11637C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
11638C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
11639C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
11640src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
11641c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11642C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
11643src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
11644c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11645C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
11646C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11647C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11648C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11649c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11650C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11651c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11652C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11653c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11654C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11655src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11656C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11657C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
11658C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11659src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11660C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11661src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11662C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11663src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11664C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11665src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11666C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11667C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
11668C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11669src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11670C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11671src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11672C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11673src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11674C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11675src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11676C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11677src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11678C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11679src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11680C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
11681C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
11682C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11683src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
11684c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11685C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
11686C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
11687C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
11688src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
11689c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11690C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
11691C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
11692C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
11693C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
11694C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11695C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
11696c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11697C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
11698C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
11699src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
11700c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11701C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
11702C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
11703c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
11704C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
11705src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
11706c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11707C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
11708C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
11709C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11710C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
11711c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11712C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
11713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
11714C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
11715c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11716C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
11717C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
11718src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
11719c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11720C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
11721C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
11722C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
11723C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
11724C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
11725C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
11726C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
11727C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
11728C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
11729C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(44): warning C4251: 'tmpl::CondInfo::op': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
11730c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11731C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(44): warning C4251: 'tmpl::CondInfo::operand': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
11732c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11733C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(45): warning C4251: 'tmpl::CondInfo::result': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::CondInfo'
11734C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11735C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(52): warning C4251: 'tmpl::ConditionalTemplate::conditions': class 'std::vector<tmpl::CondInfo,std::allocator<tmpl::CondInfo>>' needs to have dll-interface to be used by clients of class 'tmpl::ConditionalTemplate'
11736C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(52): note: see declaration of 'std::vector<tmpl::CondInfo,std::allocator<tmpl::CondInfo>>'
11737C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(73): warning C4251: 'tmpl::TemplateCache::_template_dir': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
11738c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11739C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(74): warning C4251: 'tmpl::TemplateCache::_user_template_dir': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
11740c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11741C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(75): warning C4251: 'tmpl::TemplateCache::cache': class 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>>' needs to have dll-interface to be used by clients of class 'tmpl::TemplateCache'
11742C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\tmpl/TemplateCache.h(75): note: see declaration of 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>>'
11743atomic_cpp/atomstruct_cpp/Residue.cpp(555): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
11744atomic_cpp/atomstruct_cpp/Residue.cpp(564): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
11745Ring.cpp
11746src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
11747c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11748src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
11749src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
11750c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11751src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
11752src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11753src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11754src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
11755src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
11756src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11757src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11758src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
11759src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11760src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
11761src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
11762C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11763C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11764C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11765C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11766C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11767src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11768src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
11769c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11770C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
11771C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11772C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
11773C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11774C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
11775C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11776c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11777C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11778c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11779C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11780c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11781C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11782c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11783C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11784c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11785C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11786c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11787C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11788c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11789C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11790c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11791C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11792c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11793C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11794c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11795C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11796c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11797C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11798c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11799C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11800c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11801C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11802c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11803C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11804c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11805C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11806c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11807C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11808c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11809C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11810c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11811C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11812c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11813C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11814c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11815C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11816c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11817C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11818c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11819C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11820c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11821C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11822c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11823C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11824c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11825C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11826c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11827C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11828c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11829C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11830c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11831C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11832c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11833C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11834c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11835C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11836c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11837C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11838c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11839C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11840c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11841C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11842c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11843C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11844c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11845C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11846c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11847C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11848c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11849C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11850c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11851C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11852c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11853C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11854c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11855C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11856c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11857C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11858c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11859C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11860C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
11861C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11862C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
11863src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
11864c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11865C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
11866C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11867C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11868C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11869C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11870C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11871C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
11872C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
11874C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11875C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
11876C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11877C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
11878C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11879C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
11880C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
11881c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11882C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11883C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11884c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11885C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11886c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11887C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11888C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
11889C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
11890C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
11891C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11892C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11893C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
11894C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11895C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
11896C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11897C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
11898C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
11899C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
11900src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
11901c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11902C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
11903C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
11904C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
11905src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
11906c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11907C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
11908C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11909C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
11910C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
11911C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
11912src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
11913c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11914C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
11915C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11916C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11917C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11918C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11919C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11920C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
11921C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11922C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11923C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11924C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
11925C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11926C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
11927C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11928C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
11929C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11930c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11931C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
11932C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
11933src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
11934c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11935C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
11936C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11937C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
11938C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11939C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11940C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
11941C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
11942C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11943C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11944src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
11945c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11946C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
11947C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11948C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
11949C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11950C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
11951C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11952C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11953C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11954C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
11955C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11956c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11957C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11958C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
11959C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
11960C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
11961C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
11962C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
11963C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
11964src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
11965c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11966C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
11967C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
11968C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
11969C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
11970atomic_cpp/atomstruct_cpp/Ring.cpp(235): warning C4311: 'reinterpret_cast': pointer truncation from 'atomstruct::Bond *' to 'long'
11971atomic_cpp/atomstruct_cpp/Ring.cpp(235): warning C4302: 'reinterpret_cast': truncation from 'atomstruct::Bond *' to 'long'
11972RingCalc.cpp
11973src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
11974c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11975src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
11976C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11977C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
11978C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
11979C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
11980C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11981C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11982C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11983C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
11984C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
11985C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
11986src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
11987c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11988C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
11989C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11990C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
11991C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11992C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
11993C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11994c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11995C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11996c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11997C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
11998c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
11999C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12000c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12001C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12002c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12003C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12004c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12005C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12006c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12007C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12008c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12009C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12010c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12011C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12012c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12013C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12014c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12015C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12016c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12017C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12018c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12019C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12020c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12021C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12022c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12023C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12024c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12025C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12026c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12027C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12028c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12029C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12030c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12031C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12032c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12033C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12034c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12035C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12036c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12037C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12038c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12039C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12040c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12041C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12042c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12043C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12044c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12045C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12046c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12047C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12048c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12049C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12050c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12051C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12052c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12053C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12054c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12055C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12056c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12057C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12058c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12059C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12060c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12061C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12062c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12063C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12064c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12065C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12066c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12067C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12068c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12069C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12070c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12071C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12072c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12073C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12074c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12075C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12076c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12077src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
12078c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12079src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
12080src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12081src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12082src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
12083src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
12084src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12085src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12086src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
12087C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12088src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12089src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12090src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
12091c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12092C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
12093C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12094C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12095C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12096C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12097C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12098C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12099C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12100C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12101C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12102C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12103C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12104C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
12105C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12106C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
12107C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12108c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12109C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12110C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12111c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12112C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12113c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12114C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12115C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
12116C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12117C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
12118C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12119C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12120C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
12121C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12122C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
12123C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12124C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
12125C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12126C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
12127src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
12128c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12129C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
12130C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
12131C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
12132src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
12133c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12134C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
12135C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
12136C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
12137C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
12138C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
12139src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
12140c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12141C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
12142C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12143C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12144C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12145C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
12146C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12147C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
12148C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12149C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
12150C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12151C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
12152C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12153C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
12154C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12155C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
12156C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12157c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12158C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12159C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
12160src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
12161c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12162C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
12163C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12164C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
12165C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12166C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
12167C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12168C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
12169C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12170C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12171src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
12172c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12173C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
12174C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12175C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
12176C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12177C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
12178C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12179C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
12180C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12181C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
12182C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12183c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12184C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12185C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12186C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12187C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
12188C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
12189C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
12190C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12191src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
12192c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12193C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
12194C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
12195C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
12196C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12197src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
12198c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12199C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
12200C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12201C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12202C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12203c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12204C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12205c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12206C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12207c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12208C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12209C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12210C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12211C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
12212C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12213C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12214C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12215C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12216C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12217C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12218C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12219C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12220C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12221C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
12222C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12223C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12224C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12225C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12226C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12227C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12228C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12229C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12230C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12231C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12232C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12233C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12234C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12235C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
12236C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12237Sequence.cpp
12238C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12239C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
12240C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12241C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
12242src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
12243c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12244src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
12245src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
12246c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12247C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
12248C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12249C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12250C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12251C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12252C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12253C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12254C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12255C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12256C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12257C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12258C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12259C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
12260C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12261C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
12262C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12263c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12264C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12265C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12266c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12267C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12268c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12269C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12270C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
12271C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12272C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
12273C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12274atomic_cpp/atomstruct_cpp/Sequence.cpp(228): warning C4267: 'argument': conversion from 'size_t' to 'unsigned int', possible loss of data
12275atomic_cpp/atomstruct_cpp/Sequence.cpp(228): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
12276atomic_cpp/atomstruct_cpp/Sequence.cpp(259): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12277c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\utility(186): warning C4267: 'initializing': conversion from 'size_t' to '_Ty1', possible loss of data
12278 with
12279 [
12280 _Ty1=int
12281 ]
12282c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xmemory(681): note: see reference to function template instantiation 'std::pair<int,int>::pair<_Ty,__int64,0>(_Other1 &&,_Other2 &&) noexcept' being compiled
12283 with
12284 [
12285 _Ty=unsigned __int64,
12286 _Other1=unsigned __int64,
12287 _Other2=__int64
12288 ]
12289c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xmemory(681): note: see reference to function template instantiation 'std::pair<int,int>::pair<_Ty,__int64,0>(_Other1 &&,_Other2 &&) noexcept' being compiled
12290 with
12291 [
12292 _Ty=unsigned __int64,
12293 _Other1=unsigned __int64,
12294 _Other2=__int64
12295 ]
12296c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\vector(713): note: see reference to function template instantiation 'void std::_Default_allocator_traits<_Alloc>::construct<_Ty,unsigned __int64,__int64>(_Alloc &,_Objty *const ,unsigned __int64 &&,__int64 &&)' being compiled
12297 with
12298 [
12299 _Alloc=std::allocator<std::pair<int,int>>,
12300 _Ty=std::pair<int,int>,
12301 _Objty=std::pair<int,int>
12302 ]
12303c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\vector(713): note: see reference to function template instantiation 'void std::_Default_allocator_traits<_Alloc>::construct<_Ty,unsigned __int64,__int64>(_Alloc &,_Objty *const ,unsigned __int64 &&,__int64 &&)' being compiled
12304 with
12305 [
12306 _Alloc=std::allocator<std::pair<int,int>>,
12307 _Ty=std::pair<int,int>,
12308 _Objty=std::pair<int,int>
12309 ]
12310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\vector(731): note: see reference to function template instantiation 'void std::vector<std::pair<int,int>,std::allocator<std::pair<int,int>>>::_Emplace_back_with_unused_capacity<_Ty,__int64>(_Ty &&,__int64 &&)' being compiled
12311 with
12312 [
12313 _Ty=unsigned __int64
12314 ]
12315atomic_cpp/atomstruct_cpp/Sequence.cpp(215): note: see reference to function template instantiation 'void std::vector<std::pair<int,int>,std::allocator<std::pair<int,int>>>::emplace_back<unsigned __int64,__int64>(unsigned __int64 &&,__int64 &&)' being compiled
12316c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\utility(186): warning C4244: 'initializing': conversion from '_Ty' to '_Ty2', possible loss of data
12317 with
12318 [
12319 _Ty=__int64
12320 ]
12321 and
12322 [
12323 _Ty2=int
12324 ]
12325Structure.cpp
12326src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
12327c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12328src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
12329src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
12330c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12331src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
12332src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12333src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12334src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
12335src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
12336src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12337src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12338src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
12339src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12340src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12341src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12342C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12343C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
12344C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12345C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
12346C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12347src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12348src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
12349c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12350C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
12351C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12352C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
12353C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12354C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
12355C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12356c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12357C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12358c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12359C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12360c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12361C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12362c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12363C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12364c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12365C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12366c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12367C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12368c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12369C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12370c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12371C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12372c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12373C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12374c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12375C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12376c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12377C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12378c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12379C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12380c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12381C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12382c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12383C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12384c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12385C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12386c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12387C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12388c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12389C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12390c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12391C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12392c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12393C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12394c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12395C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12396c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12397C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12398c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12399C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12400c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12401C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12402c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12403C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12404c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12405C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12406c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12407C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12408c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12409C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12410c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12411C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12412c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12413C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12414c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12415C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12416c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12417C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12418c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12419C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12420c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12421C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12423C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12424c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12425C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12426c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12427C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12428c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12429C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12430c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12431C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12432c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12433C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12434c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12435C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12436c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12437C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12438c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12439C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12440C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
12441C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12442C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
12443src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
12444c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12445C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
12446C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12447C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12448C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12449C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12450C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12451C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12452C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12453C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12454C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12455C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12456C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12457C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include\pysupport/convert.h(167): note: see declaration of 'std::vector<char,std::allocator<char>>'
12458C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12459C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include\pysupport/convert.h(167): note: see declaration of 'std::vector<char,std::allocator<char>>'
12460C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12461c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12462C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12463C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12464c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12465C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12466c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12467C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12468C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
12469C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12470C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
12471C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12472C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12473C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
12474C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12475C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
12476C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12477C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
12478C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12479C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
12480src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
12481c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12482C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
12483C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
12484C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
12485src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
12486c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12487C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
12488C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
12489C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
12490C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
12491C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
12492src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
12493c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12494C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
12495C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12496C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12497C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12498C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
12499C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12500C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
12501C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12502C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
12503C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12504C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
12505C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12506C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
12507C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12508C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
12509C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12510c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12511C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12512C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
12513src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
12514c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12515C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
12516C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12517C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
12518C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12519C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
12520C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12521C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
12522C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12523C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12524src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
12525c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12526C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
12527C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12528C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
12529C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12530C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
12531C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12532C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
12533C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12534C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
12535C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12536c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12537C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12538C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12539C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12540C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
12541C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
12542C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
12543C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12544src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
12545c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12546C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
12547C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
12548C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
12549C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12550src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
12551c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12552C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
12553C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
12554c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12555C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
12556C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
12557C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
12558C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
12559src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
12560c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12561C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
12562src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
12563c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12564C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
12565C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12566C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12567C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12568c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12569C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12570c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12571C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12572c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12573C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12574src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12575C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12576C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
12577C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12578src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12579C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12580src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12581C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12582src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12583C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12584src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12585C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12586C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
12587C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12588src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12589C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12590src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12591C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12592src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12593C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12594src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12595C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12596src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12597C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12598src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12599C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12600C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
12601C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12602atomic_cpp/atomstruct_cpp/Structure.cpp(394): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
12603atomic_cpp/atomstruct_cpp/Structure.cpp(405): warning C4267: 'initializing': conversion from 'size_t' to 'long', possible loss of data
12604atomic_cpp/atomstruct_cpp/Structure.cpp(563): warning C4267: '=': conversion from 'size_t' to 'unsigned int', possible loss of data
12605atomic_cpp/atomstruct_cpp/Structure.cpp(1132): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
12606atomic_cpp/atomstruct_cpp/Structure.cpp(1573): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
12607atomic_cpp/atomstruct_cpp/Structure.cpp(1749): warning C4244: 'initializing': conversion from '__int64' to 'int', possible loss of data
12608atomic_cpp/atomstruct_cpp/Structure.cpp(1782): warning C4244: '=': conversion from 'const double' to 'float', possible loss of data
12609atomic_cpp/atomstruct_cpp/Structure.cpp(1807): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
12610atomic_cpp/atomstruct_cpp/Structure.cpp(1852): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
12611atomic_cpp/atomstruct_cpp/Structure.cpp(1867): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12612atomic_cpp/atomstruct_cpp/Structure.cpp(1868): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12613atomic_cpp/atomstruct_cpp/Structure.cpp(1883): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
12614atomic_cpp/atomstruct_cpp/Structure.cpp(1932): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
12615atomic_cpp/atomstruct_cpp/Structure.cpp(1980): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
12616atomic_cpp/atomstruct_cpp/Structure.cpp(2224): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
12617StructureSeq.cpp
12618C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12619C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
12620C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12621C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
12622src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
12623c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12624src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
12625src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
12626c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12627C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
12628C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12629C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12630C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12631C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12632C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12633C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
12634C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12635C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12636C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12637C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
12638C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12639C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
12640C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12641C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
12642C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
12643c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12644C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12645C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12646c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12647C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12648c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12649C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12650C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
12651C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
12652C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
12653C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12654C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12655C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
12656C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12657C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
12658C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12659C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12660src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
12661c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12662C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
12663C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12664C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
12665C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12666C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
12667C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12668c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12669C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12670c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12671C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12672c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12673C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12674c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12675C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12676c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12677C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12678c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12679C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12680c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12681C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12682c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12683C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12684c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12685C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12686c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12687C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12688c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12689C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12690c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12691C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12692c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12693C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12694c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12695C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12696c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12697C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12698c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12699C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12700c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12701C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12702c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12703C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12704c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12705C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12706c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12707C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12708c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12709C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12710c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12711C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12712c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12714c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12715C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12716c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12717C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12718c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12719C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12720c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12721C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12722c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12723C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12724c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12725C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12726c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12727C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12728c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12729C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12730c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12731C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12732c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12733C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12734c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12735C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12736c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12737C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12738c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12739C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12740c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12741C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12742c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12743C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12744c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12745C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12746c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12747C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12748c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12749C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12750c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12751src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
12752c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12753src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
12754src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12755src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12756src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
12757src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
12758src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12759src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12760src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'element::Element'
12761C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12762src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12763src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12764C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12765C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
12766C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12767C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
12768C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12769C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
12770C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
12771C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
12772src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
12773c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12774C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
12775C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<atomstruct::ResName>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
12776C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<atomstruct::ResName>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
12777src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
12778c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12779C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
12780C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
12781C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
12782C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
12783C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
12784src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
12785c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12786C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
12787C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12788C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12789C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12790C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
12791C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12792C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
12793C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12794C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>'
12795C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12796C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
12797C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12798C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
12799C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12800C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
12801C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12802c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12803C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
12804C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>>>>'
12805src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
12806c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12807C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
12808C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12809C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
12810C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12811C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
12812C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
12813C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
12814C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12815C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12816src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
12817c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12818C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
12819C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12820C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12821C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12822c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12823C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12824c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12825C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12826c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12827C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12828C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12829C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12830C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>'
12831C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12832C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12833C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12834C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12835C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12836C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12837C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12838C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12839C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12840C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<atomstruct::ResName>>'
12841C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12842C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12843C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12844C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12845C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12846C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12847C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12848C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12849C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12850C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12851C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12852C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<atomstruct::ResName>,std::allocator<atomstruct::ResName>>'
12853C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
12854C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
12855C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12856src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
12857c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12858C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
12859C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12860C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
12861C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12862C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
12863C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12864C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
12865C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12866C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
12867C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12868c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12869C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12870C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
12871C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
12872C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
12873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
12874C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
12875C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
12876src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
12877c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12878C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
12879C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
12880C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
12881C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12882atomic_cpp/atomstruct_cpp/StructureSeq.cpp(372): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12883atomic_cpp/atomstruct_cpp/StructureSeq.cpp(373): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12884atomic_cpp/atomstruct_cpp/StructureSeq.cpp(380): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12885atomic_cpp/atomstruct_cpp/StructureSeq.cpp(381): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12886atomic_cpp/atomstruct_cpp/StructureSeq.cpp(387): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
12887destruct.cpp
12888C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12889C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
12890C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
12891C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
12892search.cpp
12893src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
12894c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12895src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
12896src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
12897c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12898src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
12899src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12900src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12901src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
12902src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
12903src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12904src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12905src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
12906src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12907src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
12908src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
12909C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12910C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
12911C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12912C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
12913C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
12914src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
12915src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
12916c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12917C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
12918C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12919C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
12920C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12921C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
12922C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12923c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12924C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12925c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12926C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12927c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12928C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12929c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12930C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12931c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12932C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12933c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12934C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12935c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12936C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12937c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12938C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12939c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12940C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12941c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12942C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12943c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12944C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12945c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12946C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12947c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12948C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12949c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12950C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12951c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12952C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12953c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12954C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12955c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12956C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12957c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12958C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12959c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12960C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12961c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12962C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12963c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12964C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12965c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12966C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12967c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12968C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12969c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12970C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12971c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12972C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12973c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12974C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12975c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12976C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12977c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12978C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12979c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12980C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12981c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12982C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12983c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12984C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12985c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12986C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12987c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12988C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12989c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12990C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12991c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12992C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12993c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12994C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12995c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12996C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12997c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
12998C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
12999c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13000C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13001c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13002C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13003c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13004C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13005c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13006C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
13007C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
13008C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
13009C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
13010src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
13011c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13012C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
13013C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13014C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
13015C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13016C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
13017C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13018C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
13019C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13020C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
13021C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13022C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
13023C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13024C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
13025C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13026C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
13027C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13028c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13029C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13030C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13031c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13032C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13033c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13034C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13035C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
13036C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13037C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
13038C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13039C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13040C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
13041C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13042C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
13043C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13044C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
13045C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13046C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
13047src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
13048c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13049C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
13050C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
13051C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
13052src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
13053c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13054C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
13055C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
13056C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
13057C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
13058C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
13059src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
13060c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13061C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
13062C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13063C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
13064C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13065C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
13066C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13067C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
13068C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13069C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
13070C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13071C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
13072C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13073C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
13074C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13075C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
13076C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13077c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13078C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13079C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
13080src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
13081c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13082C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
13083C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13084C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
13085C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13086C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
13087C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13088C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
13089C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13090C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13091src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
13092c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13093src/include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
13094src/include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13095src/include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
13096src/include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13097C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
13098src/include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13099C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
13100src/include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13101C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
13102src/include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13103c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13104src/include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13105C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
13106src/include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13107src/include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
13108src/include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
13109src/include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
13110src/include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13111C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\search.h(77): warning C4251: 'atomstruct::AtomSearchTree::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::AtomSearchTree'
13112C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
13113atomic_cpp/atomstruct_cpp/search.cpp(132): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
13114seq_assoc.cpp
13115src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
13116c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13117src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
13118C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
13119C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
13120C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
13121C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
13122C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
13123C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13124src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
13125c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13126C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
13127C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13128C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
13129C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13130C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
13131C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13132c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13133C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13134c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13135C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13136c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13137C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13138c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13139C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13140c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13141C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13142c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13143C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13144c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13145C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13146c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13147C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13148c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13149C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13150c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13151C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13152c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13153C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13154c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13155C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13156c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13157C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13158c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13159C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13160c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13161C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13162c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13163C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13164c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13165C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13166c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13167C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13168c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13169C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13170c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13171C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13172c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13173C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13174c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13175C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13176c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13177C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13178c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13179C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13180c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13181C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13182c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13183C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13184c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13185C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13186c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13187C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13188c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13189C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13190c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13191C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13192c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13193C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13194c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13195C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13196c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13197C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13198c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13199C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13200c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13201C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13202c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13203C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13204c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13205C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13206c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13207C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13208c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13209C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13210c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13211C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13212c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13213C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13214c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13215src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
13216c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13217C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
13218C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13219C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
13220C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13221c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13222C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13223c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13224C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13225c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13226C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13227C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13228C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13229C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
13230C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13231C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13232C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13233C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13234C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13235C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13236C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13237C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13238C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13239C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
13240C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13241C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13242C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13243C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13244C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13245C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13246C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13247C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13248C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13249C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13250C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13251C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13252C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
13253C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>'
13254C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13255src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
13256c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13257src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
13258src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
13259src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
13260src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
13261src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
13262src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
13263src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
13264src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
13265C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13266src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
13267src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
13268C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
13269C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
13270C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
13271C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
13272src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
13273c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13274C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
13275C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13276C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
13277C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13278C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
13279C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13280C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
13281C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13282C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
13283C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13284C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
13285C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13286C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
13287C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13288C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
13289C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13290c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13291C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13292C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13293c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13294C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13295c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13296C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13297C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
13298C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13299C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
13300C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13301C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13302C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
13303C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13304C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
13305C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13306C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
13307C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13308C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
13309src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
13310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13311C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
13312C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
13313C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
13314src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
13315c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13316C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
13317C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
13318C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
13319C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
13320C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
13321src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
13322c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13323C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
13324C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13325C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
13326C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13327C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
13328C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13329C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
13330C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13331C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
13332C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13333C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
13334C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13335C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
13336C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13337C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
13338C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13339c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13340C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13341C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
13342src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
13343c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13344C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
13345C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13346C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
13347C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13348C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
13349C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13350C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
13351C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13352C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13353src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
13354c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13355C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
13356C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13357C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
13358C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13359C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
13360C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13361C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
13362C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13363C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
13364C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13365c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13366C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13367C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
13368C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
13369C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
13370C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
13371C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
13372C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13373src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
13374c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13375C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
13376C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
13377C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
13378C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
13379C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(64): warning C4251: 'atomstruct::MatchMap::_pos_to_res': class 'std::map<atomstruct::StructureSeq::SeqPos,atomstruct::Residue *,std::less<atomstruct::StructureSeq::SeqPos>,std::allocator<std::pair<const atomstruct::StructureSeq::SeqPos,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::MatchMap'
13380C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(60): note: see declaration of 'std::map<atomstruct::StructureSeq::SeqPos,atomstruct::Residue *,std::less<atomstruct::StructureSeq::SeqPos>,std::allocator<std::pair<const atomstruct::StructureSeq::SeqPos,atomstruct::Residue *>>>'
13381C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(65): warning C4251: 'atomstruct::MatchMap::_res_to_pos': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::MatchMap'
13382C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
13383C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(85): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure'
13384c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
13385C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\atomic_cpp\atomstruct_cpp\seq_assoc.h(85): note: see declaration of 'atomstruct::SA_AssocFailure'
13386atomic_cpp/atomstruct_cpp/seq_assoc.cpp(184): warning C4267: '=': conversion from 'size_t' to 'unsigned int', possible loss of data
13387atomic_cpp/atomstruct_cpp/seq_assoc.cpp(195): warning C4267: '=': conversion from 'size_t' to 'unsigned int', possible loss of data
13388atomic_cpp/atomstruct_cpp/seq_assoc.cpp(204): warning C4267: '+=': conversion from 'size_t' to 'unsigned int', possible loss of data
13389atomic_cpp/atomstruct_cpp/seq_assoc.cpp(208): warning C4267: '+=': conversion from 'size_t' to 'unsigned int', possible loss of data
13390atomic_cpp/atomstruct_cpp/seq_assoc.cpp(230): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
13391atomic_cpp/atomstruct_cpp/seq_assoc.cpp(372): warning C4267: '+=': conversion from 'size_t' to 'unsigned int', possible loss of data
13392atomic_cpp/atomstruct_cpp/seq_assoc.cpp(391): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
13393atomic_cpp/atomstruct_cpp/seq_assoc.cpp(394): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
13394atomic_cpp/atomstruct_cpp/seq_assoc.cpp(395): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
13395atomic_cpp/atomstruct_cpp/seq_assoc.cpp(437): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
13396atomic_cpp/atomstruct_cpp/seq_assoc.cpp(496): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
13397atomic_cpp/atomstruct_cpp/seq_assoc.cpp(506): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
13398atomic_cpp/atomstruct_cpp/seq_assoc.cpp(508): warning C4267: '-=': conversion from 'size_t' to 'unsigned int', possible loss of data
13399atomic_cpp/atomstruct_cpp/seq_assoc.cpp(522): warning C4267: '-=': conversion from 'size_t' to 'unsigned int', possible loss of data
13400 Creating library src\lib\libatomstruct.lib and object src\lib\libatomstruct.exp
13401Generating code
13402Finished generating code
13403C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
13404!!
13405
13406 ********************************************************************************
13407 Please consider removing the following classifiers in favor of a SPDX license expression:
13408
13409 License :: Free for non-commercial use
13410
13411 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
13412 ********************************************************************************
13413
13414!!
13415 self._finalize_license_expression()
13416running build
13417running build_py
13418creating build\lib.win-amd64-cpython-311\chimerax\atomic_lib
13419copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib
13420creating build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13421copying src\data\idatm\templates\A.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13422copying src\data\idatm\templates\ACE.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13423copying src\data\idatm\templates\ALA.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13424copying src\data\idatm\templates\ARG.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13425copying src\data\idatm\templates\ASN.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13426copying src\data\idatm\templates\ASP.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13427copying src\data\idatm\templates\C.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13428copying src\data\idatm\templates\CYS.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13429copying src\data\idatm\templates\DA.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13430copying src\data\idatm\templates\DC.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13431copying src\data\idatm\templates\DG.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13432copying src\data\idatm\templates\DT.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13433copying src\data\idatm\templates\FORMAT -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13434copying src\data\idatm\templates\G.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13435copying src\data\idatm\templates\GLN.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13436copying src\data\idatm\templates\GLU.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13437copying src\data\idatm\templates\GLY.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13438copying src\data\idatm\templates\HID.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13439copying src\data\idatm\templates\HIE.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13440copying src\data\idatm\templates\HIP.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13441copying src\data\idatm\templates\HIS.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13442copying src\data\idatm\templates\HOH.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13443copying src\data\idatm\templates\HYP.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13444copying src\data\idatm\templates\ILE.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13445copying src\data\idatm\templates\LEU.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13446copying src\data\idatm\templates\LYS.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13447copying src\data\idatm\templates\MET.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13448copying src\data\idatm\templates\MSE.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13449copying src\data\idatm\templates\PHE.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13450copying src\data\idatm\templates\PRO.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13451copying src\data\idatm\templates\SER.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13452copying src\data\idatm\templates\T.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13453copying src\data\idatm\templates\THR.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13454copying src\data\idatm\templates\TRP.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13455copying src\data\idatm\templates\TYR.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13456copying src\data\idatm\templates\U.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13457copying src\data\idatm\templates\VAL.idatmres -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates
13458creating build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance
13459copying src\include\pyinstance\PythonInstance.declare.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance
13460copying src\include\pyinstance\PythonInstance.instantiate.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance
13461copying src\include\pyinstance\imex.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance
13462copying src\include\pyinstance\imex.map.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance
13463creating build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\element
13464copying src\include\element\Element.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\element
13465copying src\include\element\imex.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\element
13466creating build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13467copying src\include\atomstruct\Atom.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13468copying src\include\atomstruct\AtomicStructure.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13469copying src\include\atomstruct\Bond.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13470copying src\include\atomstruct\Chain.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13471copying src\include\atomstruct\ChangeTracker.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13472copying src\include\atomstruct\CompSS.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13473copying src\include\atomstruct\Connection.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13474copying src\include\atomstruct\Coord.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13475copying src\include\atomstruct\CoordSet.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13476copying src\include\atomstruct\MolResId.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13477copying src\include\atomstruct\PBGroup.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13478copying src\include\atomstruct\PBManager.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13479copying src\include\atomstruct\Point.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13480copying src\include\atomstruct\Pseudobond.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13481copying src\include\atomstruct\Real.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13482copying src\include\atomstruct\Residue.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13483copying src\include\atomstruct\Rgba.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13484copying src\include\atomstruct\Ring.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13485copying src\include\atomstruct\Sequence.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13486copying src\include\atomstruct\Structure.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13487copying src\include\atomstruct\StructureSeq.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13488copying src\include\atomstruct\backbone.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13489copying src\include\atomstruct\destruct.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13490copying src\include\atomstruct\polymer.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13491copying src\include\atomstruct\res_numbering.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13492copying src\include\atomstruct\search.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13493copying src\include\atomstruct\seq_assoc.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13494copying src\include\atomstruct\session.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13495copying src\include\atomstruct\string_types.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13496copying src\include\atomstruct\imex.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct
13497creating build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13498copying src\include\atomstruct\tmpl\Atom.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13499copying src\include\atomstruct\tmpl\Bond.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13500copying src\include\atomstruct\tmpl\Coord.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13501copying src\include\atomstruct\tmpl\CoordSet.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13502copying src\include\atomstruct\tmpl\Molecule.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13503copying src\include\atomstruct\tmpl\Residue.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13504copying src\include\atomstruct\tmpl\TAexcept.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13505copying src\include\atomstruct\tmpl\TemplateCache.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13506copying src\include\atomstruct\tmpl\resDescrip.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13507copying src\include\atomstruct\tmpl\residues.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13508copying src\include\atomstruct\tmpl\resinternal.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13509copying src\include\atomstruct\tmpl\restmpl.h -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl
13510creating build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13511copying src\lib\libpyinstance.dll -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13512copying src\lib\libpyinstance.lib -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13513copying src\lib\libelement.dll -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13514copying src\lib\libelement.lib -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13515copying src\lib\libatomstruct_tmpl.lib -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13516copying src\lib\libatomstruct.dll -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13517copying src\lib\libatomstruct.lib -> build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib
13518running build_ext
13519building 'chimerax.atomic_lib._load_libs' extension
13520creating build\temp.win-amd64-cpython-311\Release\atomic_cpp
13521"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -Isrc/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpatomic_cpp/load_libs.cpp /Fobuild\temp.win-amd64-cpython-311\Release\atomic_cpp\load_libs.obj
13522load_libs.cpp
13523src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
13524c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13525src/include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
13526src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
13527c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13528src/include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
13529src/include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
13530src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
13531src/include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
13532src/include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
13533src/include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
13534src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
13535src/include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
13536src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13537src/include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
13538src/include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
13539C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
13540C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
13541C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
13542C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
13543src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
13544c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13545C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
13546C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13547C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
13548C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13549C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
13550C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13551C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
13552C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13553C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
13554C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13555C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
13556C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13557C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
13558C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13559C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
13560C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
13561c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13562C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13563C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13564c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13565C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13566c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13567C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13568C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
13569C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
13570C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
13571C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13572C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
13573C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
13574C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
13575C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
13576C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
13577src/include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
13578src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
13579c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13580C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
13581C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13582C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
13583C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13584C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
13585C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13586c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13587C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13588c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13589C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13590c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13591C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13592c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13593C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13594c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13595C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13596c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13597C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13598c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13599C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13600c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13601C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13602c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13603C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13604c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13605C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13606c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13607C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13608c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13609C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13610c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13611C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13612c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13613C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13614c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13615C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13616c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13617C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13618c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13619C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13620c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13621C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13622c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13623C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13624c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13625C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13626c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13627C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13628c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13629C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13630c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13631C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13632c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13633C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13634c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13635C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13636c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13637C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13638c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13639C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13640c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13641C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13642c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13643C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13644c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13645C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13646c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13647C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13648c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13649C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13650c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13651C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13652c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13653C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13654c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13655C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13656c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13657C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13658c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13659C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13660c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13661C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13662c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13663C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13664c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13665C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13666c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13667C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
13668c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13669C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13670C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
13671C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13672C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
13673C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13674C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
13675C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
13676C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
13677src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
13678c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13679C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
13680C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
13681C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
13682src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
13683c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13684C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
13685C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
13686C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
13687C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
13688C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
13689src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
13690c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13691src/include\atomstruct/Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
13692src/include\atomstruct/Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13693C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
13694src/include\atomstruct/Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13695C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
13696src/include\atomstruct/Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13697src/include\atomstruct/Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
13698src/include\atomstruct/Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13699src/include\atomstruct/Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
13700src/include\atomstruct/Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13701C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
13702src/include\atomstruct/Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13703src/include\atomstruct/Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
13704src/include\atomstruct/Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13705src/include\atomstruct/Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
13706src/include\atomstruct/Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13707c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13708src/include\atomstruct/Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
13709src/include\atomstruct/Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
13710src/include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
13711c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
13712C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
13713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13714C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
13715C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13716C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
13717C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
13718C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
13719C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13720C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\atomic_lib\src\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
13721"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:src/lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib /EXPORT:PyInit__load_libs build\temp.win-amd64-cpython-311\Release\atomic_cpp\load_libs.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\atomic_lib\_load_libs.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\atomic_cpp\_load_libs.cp311-win_amd64.lib
13722 Creating library build\temp.win-amd64-cpython-311\Release\atomic_cpp\_load_libs.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\atomic_cpp\_load_libs.cp311-win_amd64.exp
13723Generating code
13724Finished generating code
13725running bdist_wheel
13726installing to build\bdist.win-amd64\wheel
13727running install
13728running install_lib
13729running build_ext
13730creating build\bdist.win-amd64\wheel
13731creating build\bdist.win-amd64\wheel\chimerax
13732creating build\bdist.win-amd64\wheel\chimerax\atomic_lib
13733creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\data
13734creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\data\idatm
13735creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\data\idatm\templates
13736copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\A.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13737copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\ACE.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13738copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\ALA.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13739copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\ARG.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13740copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\ASN.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13741copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\ASP.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13742copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\C.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13743copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\CYS.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13744copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\DA.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13745copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\DC.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13746copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\DG.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13747copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\DT.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13748copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\FORMAT -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13749copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\G.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13750copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\GLN.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13751copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\GLU.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13752copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\GLY.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13753copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\HID.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13754copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\HIE.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13755copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\HIP.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13756copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\HIS.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13757copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\HOH.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13758copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\HYP.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13759copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\ILE.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13760copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\LEU.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13761copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\LYS.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13762copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\MET.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13763copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\MSE.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13764copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\PHE.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13765copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\PRO.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13766copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\SER.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13767copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\T.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13768copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\THR.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13769copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\TRP.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13770copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\TYR.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13771copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\U.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13772copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\data\idatm\templates\VAL.idatmres -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\data\idatm\templates
13773creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\include
13774creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\include\atomstruct
13775copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Atom.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13776copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\AtomicStructure.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13777copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\backbone.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13778copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Bond.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13779copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Chain.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13780copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13781copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\CompSS.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13782copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Connection.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13783copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Coord.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13784copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\CoordSet.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13785copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\destruct.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13786copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\imex.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13787copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\MolResId.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13788copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\PBGroup.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13789copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\PBManager.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13790copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Point.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13791copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\polymer.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13792copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Pseudobond.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13793copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Real.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13794copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Residue.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13795copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\res_numbering.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13796copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Rgba.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13797copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Ring.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13798copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\search.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13799copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Sequence.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13800copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\seq_assoc.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13801copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\session.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13802copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\string_types.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13803copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\Structure.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13804copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\StructureSeq.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct
13805creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\include\atomstruct\tmpl
13806copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13807copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13808copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\Coord.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13809copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13810copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13811copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\resDescrip.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13812copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13813copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\residues.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13814copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\resinternal.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13815copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\restmpl.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13816copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13817copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\atomstruct\tmpl\TemplateCache.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\atomstruct\tmpl
13818creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\include\element
13819copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\element\Element.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\element
13820copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\element\imex.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\element
13821creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\include\pyinstance
13822copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance\imex.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\pyinstance
13823copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance\imex.map.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\pyinstance
13824copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance\PythonInstance.declare.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\pyinstance
13825copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\include\pyinstance\PythonInstance.instantiate.h -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\include\pyinstance
13826creating build\bdist.win-amd64\wheel\chimerax\atomic_lib\lib
13827copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib\libatomstruct.dll -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\lib
13828copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib\libatomstruct.lib -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\lib
13829copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib\libatomstruct_tmpl.lib -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\lib
13830copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib\libelement.dll -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\lib
13831copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib\libelement.lib -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\lib
13832copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib\libpyinstance.dll -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\lib
13833copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\lib\libpyinstance.lib -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib\lib
13834copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\_load_libs.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib
13835copying build\lib.win-amd64-cpython-311\chimerax\atomic_lib\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic_lib
13836running install_egg_info
13837running egg_info
13838creating ChimeraX_AtomicLibrary.egg-info
13839writing ChimeraX_AtomicLibrary.egg-info\PKG-INFO
13840writing dependency_links to ChimeraX_AtomicLibrary.egg-info\dependency_links.txt
13841writing requirements to ChimeraX_AtomicLibrary.egg-info\requires.txt
13842writing top-level names to ChimeraX_AtomicLibrary.egg-info\top_level.txt
13843writing manifest file 'ChimeraX_AtomicLibrary.egg-info\SOURCES.txt'
13844reading manifest file 'ChimeraX_AtomicLibrary.egg-info\SOURCES.txt'
13845writing manifest file 'ChimeraX_AtomicLibrary.egg-info\SOURCES.txt'
13846Copying ChimeraX_AtomicLibrary.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AtomicLibrary-14.2-py3.11.egg-info
13847running install_scripts
13848C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
13849 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
13850creating build\bdist.win-amd64\wheel\chimerax_atomiclibrary-14.2.dist-info\WHEEL
13851creating 'dist\chimerax_atomiclibrary-14.2-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
13852adding 'chimerax/atomic_lib/__init__.py'
13853adding 'chimerax/atomic_lib/_load_libs.cp311-win_amd64.pyd'
13854adding 'chimerax/atomic_lib/data/idatm/templates/A.idatmres'
13855adding 'chimerax/atomic_lib/data/idatm/templates/ACE.idatmres'
13856adding 'chimerax/atomic_lib/data/idatm/templates/ALA.idatmres'
13857adding 'chimerax/atomic_lib/data/idatm/templates/ARG.idatmres'
13858adding 'chimerax/atomic_lib/data/idatm/templates/ASN.idatmres'
13859adding 'chimerax/atomic_lib/data/idatm/templates/ASP.idatmres'
13860adding 'chimerax/atomic_lib/data/idatm/templates/C.idatmres'
13861adding 'chimerax/atomic_lib/data/idatm/templates/CYS.idatmres'
13862adding 'chimerax/atomic_lib/data/idatm/templates/DA.idatmres'
13863adding 'chimerax/atomic_lib/data/idatm/templates/DC.idatmres'
13864adding 'chimerax/atomic_lib/data/idatm/templates/DG.idatmres'
13865adding 'chimerax/atomic_lib/data/idatm/templates/DT.idatmres'
13866adding 'chimerax/atomic_lib/data/idatm/templates/FORMAT'
13867adding 'chimerax/atomic_lib/data/idatm/templates/G.idatmres'
13868adding 'chimerax/atomic_lib/data/idatm/templates/GLN.idatmres'
13869adding 'chimerax/atomic_lib/data/idatm/templates/GLU.idatmres'
13870adding 'chimerax/atomic_lib/data/idatm/templates/GLY.idatmres'
13871adding 'chimerax/atomic_lib/data/idatm/templates/HID.idatmres'
13872adding 'chimerax/atomic_lib/data/idatm/templates/HIE.idatmres'
13873adding 'chimerax/atomic_lib/data/idatm/templates/HIP.idatmres'
13874adding 'chimerax/atomic_lib/data/idatm/templates/HIS.idatmres'
13875adding 'chimerax/atomic_lib/data/idatm/templates/HOH.idatmres'
13876adding 'chimerax/atomic_lib/data/idatm/templates/HYP.idatmres'
13877adding 'chimerax/atomic_lib/data/idatm/templates/ILE.idatmres'
13878adding 'chimerax/atomic_lib/data/idatm/templates/LEU.idatmres'
13879adding 'chimerax/atomic_lib/data/idatm/templates/LYS.idatmres'
13880adding 'chimerax/atomic_lib/data/idatm/templates/MET.idatmres'
13881adding 'chimerax/atomic_lib/data/idatm/templates/MSE.idatmres'
13882adding 'chimerax/atomic_lib/data/idatm/templates/PHE.idatmres'
13883adding 'chimerax/atomic_lib/data/idatm/templates/PRO.idatmres'
13884adding 'chimerax/atomic_lib/data/idatm/templates/SER.idatmres'
13885adding 'chimerax/atomic_lib/data/idatm/templates/T.idatmres'
13886adding 'chimerax/atomic_lib/data/idatm/templates/THR.idatmres'
13887adding 'chimerax/atomic_lib/data/idatm/templates/TRP.idatmres'
13888adding 'chimerax/atomic_lib/data/idatm/templates/TYR.idatmres'
13889adding 'chimerax/atomic_lib/data/idatm/templates/U.idatmres'
13890adding 'chimerax/atomic_lib/data/idatm/templates/VAL.idatmres'
13891adding 'chimerax/atomic_lib/include/atomstruct/Atom.h'
13892adding 'chimerax/atomic_lib/include/atomstruct/AtomicStructure.h'
13893adding 'chimerax/atomic_lib/include/atomstruct/Bond.h'
13894adding 'chimerax/atomic_lib/include/atomstruct/Chain.h'
13895adding 'chimerax/atomic_lib/include/atomstruct/ChangeTracker.h'
13896adding 'chimerax/atomic_lib/include/atomstruct/CompSS.h'
13897adding 'chimerax/atomic_lib/include/atomstruct/Connection.h'
13898adding 'chimerax/atomic_lib/include/atomstruct/Coord.h'
13899adding 'chimerax/atomic_lib/include/atomstruct/CoordSet.h'
13900adding 'chimerax/atomic_lib/include/atomstruct/MolResId.h'
13901adding 'chimerax/atomic_lib/include/atomstruct/PBGroup.h'
13902adding 'chimerax/atomic_lib/include/atomstruct/PBManager.h'
13903adding 'chimerax/atomic_lib/include/atomstruct/Point.h'
13904adding 'chimerax/atomic_lib/include/atomstruct/Pseudobond.h'
13905adding 'chimerax/atomic_lib/include/atomstruct/Real.h'
13906adding 'chimerax/atomic_lib/include/atomstruct/Residue.h'
13907adding 'chimerax/atomic_lib/include/atomstruct/Rgba.h'
13908adding 'chimerax/atomic_lib/include/atomstruct/Ring.h'
13909adding 'chimerax/atomic_lib/include/atomstruct/Sequence.h'
13910adding 'chimerax/atomic_lib/include/atomstruct/Structure.h'
13911adding 'chimerax/atomic_lib/include/atomstruct/StructureSeq.h'
13912adding 'chimerax/atomic_lib/include/atomstruct/backbone.h'
13913adding 'chimerax/atomic_lib/include/atomstruct/destruct.h'
13914adding 'chimerax/atomic_lib/include/atomstruct/imex.h'
13915adding 'chimerax/atomic_lib/include/atomstruct/polymer.h'
13916adding 'chimerax/atomic_lib/include/atomstruct/res_numbering.h'
13917adding 'chimerax/atomic_lib/include/atomstruct/search.h'
13918adding 'chimerax/atomic_lib/include/atomstruct/seq_assoc.h'
13919adding 'chimerax/atomic_lib/include/atomstruct/session.h'
13920adding 'chimerax/atomic_lib/include/atomstruct/string_types.h'
13921adding 'chimerax/atomic_lib/include/atomstruct/tmpl/Atom.h'
13922adding 'chimerax/atomic_lib/include/atomstruct/tmpl/Bond.h'
13923adding 'chimerax/atomic_lib/include/atomstruct/tmpl/Coord.h'
13924adding 'chimerax/atomic_lib/include/atomstruct/tmpl/CoordSet.h'
13925adding 'chimerax/atomic_lib/include/atomstruct/tmpl/Molecule.h'
13926adding 'chimerax/atomic_lib/include/atomstruct/tmpl/Residue.h'
13927adding 'chimerax/atomic_lib/include/atomstruct/tmpl/TAexcept.h'
13928adding 'chimerax/atomic_lib/include/atomstruct/tmpl/TemplateCache.h'
13929adding 'chimerax/atomic_lib/include/atomstruct/tmpl/resDescrip.h'
13930adding 'chimerax/atomic_lib/include/atomstruct/tmpl/residues.h'
13931adding 'chimerax/atomic_lib/include/atomstruct/tmpl/resinternal.h'
13932adding 'chimerax/atomic_lib/include/atomstruct/tmpl/restmpl.h'
13933adding 'chimerax/atomic_lib/include/element/Element.h'
13934adding 'chimerax/atomic_lib/include/element/imex.h'
13935adding 'chimerax/atomic_lib/include/pyinstance/PythonInstance.declare.h'
13936adding 'chimerax/atomic_lib/include/pyinstance/PythonInstance.instantiate.h'
13937adding 'chimerax/atomic_lib/include/pyinstance/imex.h'
13938adding 'chimerax/atomic_lib/include/pyinstance/imex.map.h'
13939adding 'chimerax/atomic_lib/lib/libatomstruct.dll'
13940adding 'chimerax/atomic_lib/lib/libatomstruct.lib'
13941adding 'chimerax/atomic_lib/lib/libatomstruct_tmpl.lib'
13942adding 'chimerax/atomic_lib/lib/libelement.dll'
13943adding 'chimerax/atomic_lib/lib/libelement.lib'
13944adding 'chimerax/atomic_lib/lib/libpyinstance.dll'
13945adding 'chimerax/atomic_lib/lib/libpyinstance.lib'
13946adding 'chimerax_atomiclibrary-14.2.dist-info/METADATA'
13947adding 'chimerax_atomiclibrary-14.2.dist-info/WHEEL'
13948adding 'chimerax_atomiclibrary-14.2.dist-info/top_level.txt'
13949adding 'chimerax_atomiclibrary-14.2.dist-info/RECORD'
13950removing build\bdist.win-amd64\wheel
13951Distribution is in .\dist\ChimeraX_AtomicLibrary-14.2-cp311-cp311-win_amd64.whl
13952STATUS:
13953Installing bundle
13954INFO:
13955Executing: toolshed install .\dist\ChimeraX_AtomicLibrary-14.2-cp311-cp311-win_amd64.whl userOnly false noDeps true
13956Installed ChimeraX-AtomicLibrary (14.2)
13957
13958make sync
13959make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
13960cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync
13961'dist/chimerax_atomiclibrary-14.2-cp311-cp311-win_amd64.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_atomiclibrary-14.2-cp311-cp311-win_amd64.whl'
13962make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
13963make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic_lib'
13964make -C atom_search build
13965make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
13966if [ -z "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe" ]; then \
13967 echo "missing ChimeraX application's python"; exit 1; \
13968else \
13969 PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel install . user false exit true noDeps true"; \
13970fi
13971INFO:
13972Executing: devel install . user false exit true noDeps true
13973warning: search_cpp\ast.pyx:34:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
13974Compiling search_cpp/ast.pyx because it changed.
13975[1/1] Cythonizing search_cpp/ast.pyx
13976C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
13977!!
13978
13979 ********************************************************************************
13980 Please consider removing the following classifiers in favor of a SPDX license expression:
13981
13982 License :: Free for non-commercial use
13983
13984 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
13985 ********************************************************************************
13986
13987!!
13988 self._finalize_license_expression()
13989running build
13990running build_py
13991creating build\lib.win-amd64-cpython-311\chimerax\atom_search
13992copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\atom_search
13993copying src\ast.pyx -> build\lib.win-amd64-cpython-311\chimerax\atom_search
13994running build_ext
13995building 'chimerax.atom_search.ast' extension
13996creating build\temp.win-amd64-cpython-311\Release\search_cpp
13997"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -Isearch_cpp -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpsearch_cpp/ast.cpp /Fobuild\temp.win-amd64-cpython-311\Release\search_cpp\ast.obj
13998ast.cpp
13999C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
14000c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14001C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
14002C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
14003c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14004C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
14005C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14006C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14007C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
14008C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
14009C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14010C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14011C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
14012C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14013C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14014C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14015C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14016C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
14017C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14018C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
14019C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14020C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14021C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
14022c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14023C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
14024C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14025C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
14026C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14027C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
14028C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14029c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14030C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14031c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14032C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14033c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14034C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14035c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14036C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14037c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14038C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14039c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14040C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14041c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14042C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14043c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14044C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14045c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14046C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14047c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14048C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14049c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14050C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14051c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14052C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14053c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14054C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14055c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14056C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14057c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14058C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14059c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14060C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14061c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14062C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14063c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14064C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14065c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14066C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14067c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14068C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14069c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14070C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14071c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14072C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14073c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14074C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14075c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14076C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14077c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14078C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14079c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14080C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14081c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14082C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14083c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14084C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14085c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14086C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14087c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14088C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14089c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14090C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14091c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14092C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14093c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14094C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14095c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14096C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14097c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14098C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14099c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14100C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14101c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14102C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14103c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14104C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14105c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14106C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14107c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14108C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14109c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14110C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14111c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14112C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
14113C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
14114C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
14115C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
14116C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
14117c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14118C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
14119C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14120C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14121C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14122C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14123C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14124C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14125C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14126C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
14127C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14128C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
14129C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14130C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
14131C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14132C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
14133C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14134c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14135C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14136C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14137c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14138C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14139c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14140C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14141C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
14142C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14143C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
14144C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14145C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14146C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
14147C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14148C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
14149C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14150C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
14151C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14152C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
14153C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
14154c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14155C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
14156C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
14157C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
14158C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
14159c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14160C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
14161C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
14162C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
14163C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
14164C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
14165C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
14166c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14167C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
14168C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14169C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14170C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14171C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
14172C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14173C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
14174C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14175C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14176C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14177C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
14178C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14179C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
14180C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14181C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
14182C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14183c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14184C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14185C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14186C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
14187c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14188C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
14189C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14190C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
14191C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14192C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
14193C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14194C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
14195C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14196C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14197C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
14198c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14199C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
14200C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14201C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
14202C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14203C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
14204C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14205C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
14206C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14207C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
14208C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14209c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14210C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14211C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14212C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14213C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
14214C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
14215C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
14216C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14217C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/search.h(77): warning C4251: 'atomstruct::AtomSearchTree::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::AtomSearchTree'
14218C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14219search_cpp/ast.cpp(6439): warning C4551: function call missing argument list
14220search_cpp/ast.cpp(6440): warning C4551: function call missing argument list
14221search_cpp/ast.cpp(6441): warning C4551: function call missing argument list
14222search_cpp/ast.cpp(6564): warning C4551: function call missing argument list
14223search_cpp/ast.cpp(8823): warning C4551: function call missing argument list
14224search_cpp/ast.cpp(8830): warning C4551: function call missing argument list
14225"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib /EXPORT:PyInit_ast build\temp.win-amd64-cpython-311\Release\search_cpp\ast.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\atom_search\ast.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\search_cpp\ast.cp311-win_amd64.lib
14226 Creating library build\temp.win-amd64-cpython-311\Release\search_cpp\ast.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\search_cpp\ast.cp311-win_amd64.exp
14227Generating code
14228Finished generating code
14229running bdist_wheel
14230installing to build\bdist.win-amd64\wheel
14231running install
14232running install_lib
14233running build_ext
14234creating build\bdist.win-amd64\wheel
14235creating build\bdist.win-amd64\wheel\chimerax
14236creating build\bdist.win-amd64\wheel\chimerax\atom_search
14237copying build\lib.win-amd64-cpython-311\chimerax\atom_search\ast.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\atom_search
14238copying build\lib.win-amd64-cpython-311\chimerax\atom_search\ast.pyx -> build\bdist.win-amd64\wheel\.\chimerax\atom_search
14239copying build\lib.win-amd64-cpython-311\chimerax\atom_search\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\atom_search
14240running install_egg_info
14241running egg_info
14242creating ChimeraX_AtomSearch.egg-info
14243writing ChimeraX_AtomSearch.egg-info\PKG-INFO
14244writing dependency_links to ChimeraX_AtomSearch.egg-info\dependency_links.txt
14245writing requirements to ChimeraX_AtomSearch.egg-info\requires.txt
14246writing top-level names to ChimeraX_AtomSearch.egg-info\top_level.txt
14247writing manifest file 'ChimeraX_AtomSearch.egg-info\SOURCES.txt'
14248reading manifest file 'ChimeraX_AtomSearch.egg-info\SOURCES.txt'
14249writing manifest file 'ChimeraX_AtomSearch.egg-info\SOURCES.txt'
14250Copying ChimeraX_AtomSearch.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AtomSearch-2.0.1-py3.11.egg-info
14251running install_scripts
14252C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
14253 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
14254creating build\bdist.win-amd64\wheel\chimerax_atomsearch-2.0.1.dist-info\WHEEL
14255creating 'dist\chimerax_atomsearch-2.0.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
14256adding 'chimerax/atom_search/__init__.py'
14257adding 'chimerax/atom_search/ast.cp311-win_amd64.pyd'
14258adding 'chimerax/atom_search/ast.pyx'
14259adding 'chimerax_atomsearch-2.0.1.dist-info/METADATA'
14260adding 'chimerax_atomsearch-2.0.1.dist-info/WHEEL'
14261adding 'chimerax_atomsearch-2.0.1.dist-info/top_level.txt'
14262adding 'chimerax_atomsearch-2.0.1.dist-info/RECORD'
14263removing build\bdist.win-amd64\wheel
14264Distribution is in .\dist\ChimeraX_AtomSearch-2.0.1-cp311-cp311-win_amd64.whl
14265STATUS:
14266Installing bundle
14267INFO:
14268Executing: toolshed install .\dist\ChimeraX_AtomSearch-2.0.1-cp311-cp311-win_amd64.whl userOnly false noDeps true
14269Installed ChimeraX-AtomSearch (2.0.1)
14270
14271make sync
14272make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
14273cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync
14274'dist/chimerax_atomsearch-2.0.1-cp311-cp311-win_amd64.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_atomsearch-2.0.1-cp311-cp311-win_amd64.whl'
14275make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
14276make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atom_search'
14277make -C pdb_lib build
14278make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
14279if [ -z "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe" ]; then \
14280 echo "missing ChimeraX application's python"; exit 1; \
14281else \
14282 PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel install . user false exit true noDeps true"; \
14283fi
14284INFO:
14285Executing: devel install . user false exit true noDeps true
14286connect.cpp
14287C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
14288c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14289C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
14290C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
14291c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14292C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
14293C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14294C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14295C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
14296C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
14297C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14298C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14299C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
14300C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14301C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14302C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14303C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14304C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
14305C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14306C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
14307C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14308C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14309C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
14310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14311C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
14312C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14313C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
14314C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14315C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
14316C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14317c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14318C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14319c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14320C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14321c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14322C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14323c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14324C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14325c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14326C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14327c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14328C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14329c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14330C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14331c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14332C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14333c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14334C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14335c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14336C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14337c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14338C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14339c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14340C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14341c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14342C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14343c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14344C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14345c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14346C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14347c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14348C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14349c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14350C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14351c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14352C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14353c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14354C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14355c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14356C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14357c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14358C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14359c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14360C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14361c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14362C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14363c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14364C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14365c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14366C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14367c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14368C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14369c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14370C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14371c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14372C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14373c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14374C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14375c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14376C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14377c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14378C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14379c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14380C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14381c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14382C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14383c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14384C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14385c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14386C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14387c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14388C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14389c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14390C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14391c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14392C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14393c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14394C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14395c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14396C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14397c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14398C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14399c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14400C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
14401C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
14402C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
14403C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
14404C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
14405c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14406C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
14407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14408C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14410C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14411C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14412C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14413C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14414C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
14415C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14416C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
14417C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14418C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
14419C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14420C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
14421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14424C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14425c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14426C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14427c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14428C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14429C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
14430C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14431C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
14432C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14433C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14434C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
14435C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14436C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
14437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14438C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
14439C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14440C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
14441C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
14442c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14443C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
14444C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
14445C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
14446C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
14447c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14448C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
14449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
14450C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
14451C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
14452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
14453C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
14454c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14455C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
14456C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14457C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14458C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14459C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
14460C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14461C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
14462C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14463C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14464C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14465C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
14466C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14467C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
14468C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14469C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
14470C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14471c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14472C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14474C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
14475c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14476C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
14477C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14478C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
14479C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14480C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
14481C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14482C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
14483C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14484C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14485C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
14486c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14487C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
14488C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14489C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
14490C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14491C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
14492C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14493C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
14494C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14495C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
14496C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14497c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14499C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14500C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14501C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
14502C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
14503C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
14504C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14505C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
14506c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14507C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
14508C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14509C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14510C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14511c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14512C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14513c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14514C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14515c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14516C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14517C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14518C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14519C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
14520C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14521C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14522C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14523C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14524C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14526C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14527C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14528C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14529C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
14530C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14531C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14532C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14533C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14534C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14535C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14536C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14537C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14538C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14540C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14542C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14543C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
14544C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14545C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
14546c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14547C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
14548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
14549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
14550C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
14551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
14552c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14553C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
14554c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14555C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
14556C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14557C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14558C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14559c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14560C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
14562C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14563c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14564C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14565C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
14566C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
14567c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14568C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
14569C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
14570c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14571C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
14572C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
14573C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
14574C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
14575C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
14576c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14577C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
14578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
14579c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
14581C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
14582C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
14583C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
14584c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14585C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
14586C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
14587C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
14588C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
14589C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
14590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
14591c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14592C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
14593C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
14594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
14595c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
14597C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
14598c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
14599C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
14600C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
14601c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14602C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
14603C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
14604C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
14605C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
14606C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
14607C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
14608C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
14609C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
14610C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
14611connect_cpp/connect.cpp(59): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
14612connect_cpp/connect.cpp(61): warning C4244: 'initializing': conversion from 'atomstruct::Real' to 'float', possible loss of data
14613connect_cpp/connect.cpp(182): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
14614connect_cpp/connect.cpp(218): warning C4244: 'initializing': conversion from 'atomstruct::Real' to 'float', possible loss of data
14615connect_cpp/connect.cpp(660): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
14616 Creating library src\lib\libpdbconnect.lib and object src\lib\libpdbconnect.exp
14617Generating code
14618Finished generating code
14619C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
14620!!
14621
14622 ********************************************************************************
14623 Please consider removing the following classifiers in favor of a SPDX license expression:
14624
14625 License :: Free for non-commercial use
14626
14627 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
14628 ********************************************************************************
14629
14630!!
14631 self._finalize_license_expression()
14632running build
14633running build_py
14634creating build\lib.win-amd64-cpython-311\chimerax\pdb_lib
14635copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\pdb_lib
14636creating build\lib.win-amd64-cpython-311\chimerax\pdb_lib\include\pdb
14637copying src\include\pdb\connect.h -> build\lib.win-amd64-cpython-311\chimerax\pdb_lib\include\pdb
14638copying src\include\pdb\imex.h -> build\lib.win-amd64-cpython-311\chimerax\pdb_lib\include\pdb
14639creating build\lib.win-amd64-cpython-311\chimerax\pdb_lib\lib
14640copying src\lib\libpdbconnect.dll -> build\lib.win-amd64-cpython-311\chimerax\pdb_lib\lib
14641copying src\lib\libpdbconnect.lib -> build\lib.win-amd64-cpython-311\chimerax\pdb_lib\lib
14642running build_ext
14643building 'chimerax.pdb_lib._load_libs' extension
14644creating build\temp.win-amd64-cpython-311\Release\connect_cpp
14645"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -Isrc/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpconnect_cpp/load_libs.cpp /Fobuild\temp.win-amd64-cpython-311\Release\connect_cpp\load_libs.obj
14646load_libs.cpp
14647C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
14648c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14649C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
14650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
14651c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14652C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
14653C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14654C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14655C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
14656C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
14657C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14658C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14659C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
14660C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
14662C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
14663C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14664C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
14665C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14666C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
14667C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
14668C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14669C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
14670c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14671C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
14672C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14673C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
14674C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14675C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
14676C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14677c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14678C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14679c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14680C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14681c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14682C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14683c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14684C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14685c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14686C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14687c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14688C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14689c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14690C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14691c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14692C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14693c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14694C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14695c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14696C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14697c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14698C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14699c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14700C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14701c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14702C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14703c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14704C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14705c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14706C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14707c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14708C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14709c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14710C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14711c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14712C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14713c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14714C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14715c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14716C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14717c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14718C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14719c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14720C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14721c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14722C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14723c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14724C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14725c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14726C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14727c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14728C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14729c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14730C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14731c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14732C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14733c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14734C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14735c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14736C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14737c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14738C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14739c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14740C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14741c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14742C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14743c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14744C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14745c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14746C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14747c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14748C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14749c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14750C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14751c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14752C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14753c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14754C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14755c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14756C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14757c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14758C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
14759c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14760C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
14761C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
14762C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
14763C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
14764C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
14765c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14766C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
14767C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14768C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14769C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14770C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14771C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14772C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
14773C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14774C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
14775C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14776C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
14777C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14778C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
14779C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14780C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
14781C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
14782c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14783C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14784C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14785c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14786C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14787c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14788C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14789C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
14790C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
14791C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
14792C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14793C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14794C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
14795C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14796C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
14797C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14798C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
14799C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
14800C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
14801C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
14802c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14803C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
14804C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
14805C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
14806C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
14807c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14808C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
14809C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
14810C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
14811C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
14812C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
14813C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
14814c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14815C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
14816C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14817C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14818C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14819C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
14820C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14821C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
14822C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14823C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14824C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14825C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
14826C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14827C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
14828C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14829C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
14830C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14831c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14832C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
14833C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14834C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
14835c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14836C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
14837C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14838C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
14839C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14840C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
14841C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
14842C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
14843C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14844C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14845C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
14846c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14847C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
14848C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14849C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
14850C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14851C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
14852C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14853C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
14854C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14855C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
14856C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14857c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14858C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14859C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14860C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
14861C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
14862C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
14863C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
14864C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14865C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
14866c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14867C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
14868C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14869C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
14870C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14871c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14872C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14873c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14874C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14875c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14876C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14877C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14878C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14879C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
14880C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14881C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14882C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14883C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14884C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14885C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14886C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14887C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14888C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14889C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
14890C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14891C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14892C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14893C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14894C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14895C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14896C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14897C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14898C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14899C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14900C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14901C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
14902C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
14903C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
14904C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
14905C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
14906c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14907C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
14908C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
14909C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
14910C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
14911C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
14912c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14913C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
14914c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14915C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
14916C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14917C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
14918C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14919c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14920C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14921C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
14922C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14923c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
14924C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
14925C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
14926"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:src/lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libpdbconnect.lib /EXPORT:PyInit__load_libs build\temp.win-amd64-cpython-311\Release\connect_cpp\load_libs.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\pdb_lib\_load_libs.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\connect_cpp\_load_libs.cp311-win_amd64.lib
14927 Creating library build\temp.win-amd64-cpython-311\Release\connect_cpp\_load_libs.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\connect_cpp\_load_libs.cp311-win_amd64.exp
14928Generating code
14929Finished generating code
14930running bdist_wheel
14931installing to build\bdist.win-amd64\wheel
14932running install
14933running install_lib
14934running build_ext
14935creating build\bdist.win-amd64\wheel
14936creating build\bdist.win-amd64\wheel\chimerax
14937creating build\bdist.win-amd64\wheel\chimerax\pdb_lib
14938creating build\bdist.win-amd64\wheel\chimerax\pdb_lib\include
14939creating build\bdist.win-amd64\wheel\chimerax\pdb_lib\include\pdb
14940copying build\lib.win-amd64-cpython-311\chimerax\pdb_lib\include\pdb\connect.h -> build\bdist.win-amd64\wheel\.\chimerax\pdb_lib\include\pdb
14941copying build\lib.win-amd64-cpython-311\chimerax\pdb_lib\include\pdb\imex.h -> build\bdist.win-amd64\wheel\.\chimerax\pdb_lib\include\pdb
14942creating build\bdist.win-amd64\wheel\chimerax\pdb_lib\lib
14943copying build\lib.win-amd64-cpython-311\chimerax\pdb_lib\lib\libpdbconnect.dll -> build\bdist.win-amd64\wheel\.\chimerax\pdb_lib\lib
14944copying build\lib.win-amd64-cpython-311\chimerax\pdb_lib\lib\libpdbconnect.lib -> build\bdist.win-amd64\wheel\.\chimerax\pdb_lib\lib
14945copying build\lib.win-amd64-cpython-311\chimerax\pdb_lib\_load_libs.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\pdb_lib
14946copying build\lib.win-amd64-cpython-311\chimerax\pdb_lib\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_lib
14947running install_egg_info
14948running egg_info
14949creating ChimeraX_PDBLibrary.egg-info
14950writing ChimeraX_PDBLibrary.egg-info\PKG-INFO
14951writing dependency_links to ChimeraX_PDBLibrary.egg-info\dependency_links.txt
14952writing requirements to ChimeraX_PDBLibrary.egg-info\requires.txt
14953writing top-level names to ChimeraX_PDBLibrary.egg-info\top_level.txt
14954writing manifest file 'ChimeraX_PDBLibrary.egg-info\SOURCES.txt'
14955reading manifest file 'ChimeraX_PDBLibrary.egg-info\SOURCES.txt'
14956writing manifest file 'ChimeraX_PDBLibrary.egg-info\SOURCES.txt'
14957Copying ChimeraX_PDBLibrary.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_PDBLibrary-1.0.5-py3.11.egg-info
14958running install_scripts
14959C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
14960 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
14961creating build\bdist.win-amd64\wheel\chimerax_pdblibrary-1.0.5.dist-info\WHEEL
14962creating 'dist\chimerax_pdblibrary-1.0.5-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
14963adding 'chimerax/pdb_lib/__init__.py'
14964adding 'chimerax/pdb_lib/_load_libs.cp311-win_amd64.pyd'
14965adding 'chimerax/pdb_lib/include/pdb/connect.h'
14966adding 'chimerax/pdb_lib/include/pdb/imex.h'
14967adding 'chimerax/pdb_lib/lib/libpdbconnect.dll'
14968adding 'chimerax/pdb_lib/lib/libpdbconnect.lib'
14969adding 'chimerax_pdblibrary-1.0.5.dist-info/METADATA'
14970adding 'chimerax_pdblibrary-1.0.5.dist-info/WHEEL'
14971adding 'chimerax_pdblibrary-1.0.5.dist-info/top_level.txt'
14972adding 'chimerax_pdblibrary-1.0.5.dist-info/RECORD'
14973removing build\bdist.win-amd64\wheel
14974Distribution is in .\dist\ChimeraX_PDBLibrary-1.0.5-cp311-cp311-win_amd64.whl
14975STATUS:
14976Installing bundle
14977INFO:
14978Executing: toolshed install .\dist\ChimeraX_PDBLibrary-1.0.5-cp311-cp311-win_amd64.whl userOnly false noDeps true
14979Installed ChimeraX-PDBLibrary (1.0.5)
14980
14981make sync
14982make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
14983cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync
14984'dist/chimerax_pdblibrary-1.0.5-cp311-cp311-win_amd64.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_pdblibrary-1.0.5-cp311-cp311-win_amd64.whl'
14985make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
14986make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_lib'
14987make -C atomic build
14988make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
14989if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
14990 echo "missing ChimeraX application's python"; exit 1; \
14991else \
14992 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
14993fi
14994INFO:
14995Executing: devel build . exit true
14996warning: atomic_cpp\connect.pyx:29:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
14997warning: atomic_cpp\cytmpl.pyx:33:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
14998Compiling atomic_cpp/cymol.pyx because it changed.
14999Compiling atomic_cpp/cytmpl.pyx because it changed.
15000Compiling atomic_cpp/connect.pyx because it changed.
15001[1/3] Cythonizing atomic_cpp/connect.pyx
15002[2/3] Cythonizing atomic_cpp/cymol.pyx
15003[3/3] Cythonizing atomic_cpp/cytmpl.pyx
15004molc.cpp
15005C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
15006c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15007C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
15008C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
15009c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15010C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
15011C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15012C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15013C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
15014C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
15015C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15016C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15017C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
15018C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15019C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15020C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15021C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15022C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15023C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15024C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15025C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15026C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15027C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
15028c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15029C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
15030C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15031C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
15032C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15033C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
15034C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15035c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15036C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15037c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15038C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15039c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15040C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15041c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15042C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15043c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15044C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15045c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15046C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15047c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15048C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15049c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15050C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15051c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15052C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15053c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15054C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15055c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15056C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15057c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15058C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15059c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15060C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15061c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15062C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15063c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15064C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15065c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15066C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15067c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15068C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15069c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15070C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15071c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15072C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15073c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15074C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15075c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15076C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15077c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15078C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15079c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15080C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15081c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15082C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15083c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15084C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15085c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15086C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15087c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15088C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15089c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15090C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15091c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15092C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15093c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15094C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15095c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15096C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15097c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15098C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15099c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15100C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15101c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15102C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15103c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15104C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15105c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15106C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15107c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15108C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15109c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15110C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15111c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15112C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15113c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15114C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15115c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15116C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15117c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15118C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
15119C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
15120C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
15121C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
15122C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
15123c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15124C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
15125C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15126C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15127C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15128C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15129C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15130C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15131C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15132C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15133C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15134C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15135C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15136C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15137C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15138C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15139C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15140c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15141C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15142C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15143c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15144C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15145c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15146C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15147C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
15148C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15149C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15150C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15151C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15152C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
15153C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15154C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
15155C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15156C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
15157C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15158C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
15159C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
15160c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15161C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
15162C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
15163C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
15164C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
15165c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15166C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
15167C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15168C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
15169C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15170C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
15171C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
15172c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15173C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
15174C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15175C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
15176C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15177C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
15178C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15179C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
15180C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15181C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15182C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15183C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15184C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15185C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
15186C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15187C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
15188C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15189c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15190C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15191C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15192C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
15193c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15194C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
15195C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
15196C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
15197C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
15198C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
15199C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
15200C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
15201C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15202C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15203C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
15204c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15205C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
15206C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15207C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
15208C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15209C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
15210C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15211C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
15212C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15213C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
15214C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15215c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15216C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15217C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
15218C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15219C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
15220C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
15221C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
15222C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15223C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
15224c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15225C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
15226C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
15227C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
15228C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
15229C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
15230c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15231C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
15232C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15233C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
15234C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15235c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15236C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15237c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15238C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15239c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15240C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15241C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15242C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15243C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
15244C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15245C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15246C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15247C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15248C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15249C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15250C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15251C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15252C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15253C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
15254C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15255C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15256C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15257C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15258C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15259C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15260C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15261C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15262C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15263C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15264C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15265C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15266C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
15267C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
15268C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15269C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
15270c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15271C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
15272c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15273C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
15274C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
15275c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15276C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
15277C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
15278C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
15279C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
15280C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
15281c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15282C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
15283C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/seq_assoc.h(64): warning C4251: 'atomstruct::MatchMap::_pos_to_res': class 'std::map<atomstruct::StructureSeq::SeqPos,atomstruct::Residue *,std::less<atomstruct::StructureSeq::SeqPos>,std::allocator<std::pair<const atomstruct::StructureSeq::SeqPos,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::MatchMap'
15284C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/seq_assoc.h(60): note: see declaration of 'std::map<atomstruct::StructureSeq::SeqPos,atomstruct::Residue *,std::less<atomstruct::StructureSeq::SeqPos>,std::allocator<std::pair<const atomstruct::StructureSeq::SeqPos,atomstruct::Residue *>>>'
15285C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/seq_assoc.h(65): warning C4251: 'atomstruct::MatchMap::_res_to_pos': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::MatchMap'
15286C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
15287C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/seq_assoc.h(85): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure'
15288c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
15289C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/seq_assoc.h(85): note: see declaration of 'atomstruct::SA_AssocFailure'
15290atomic_cpp/molc.cpp(1700): warning C4244: '=': conversion from 'atomstruct::Real' to 'float32_t', possible loss of data
15291atomic_cpp/molc.cpp(1884): warning C4244: 'initializing': conversion from 'const atomstruct::Real' to 'float', possible loss of data
15292atomic_cpp/molc.cpp(1884): warning C4244: 'initializing': conversion from 'const atomstruct::Real' to 'float', possible loss of data
15293atomic_cpp/molc.cpp(1884): warning C4244: 'initializing': conversion from 'const atomstruct::Real' to 'float', possible loss of data
15294atomic_cpp/molc.cpp(1884): warning C4244: 'initializing': conversion from 'const atomstruct::Real' to 'float', possible loss of data
15295atomic_cpp/molc.cpp(1884): warning C4244: 'initializing': conversion from 'const atomstruct::Real' to 'float', possible loss of data
15296atomic_cpp/molc.cpp(1884): warning C4244: 'initializing': conversion from 'const atomstruct::Real' to 'float', possible loss of data
15297atomic_cpp/molc.cpp(1898): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
15298atomic_cpp/molc.cpp(1916): warning C4244: '=': conversion from 'double' to 'float32_t', possible loss of data
15299atomic_cpp/molc.cpp(1917): warning C4244: '=': conversion from 'double' to 'float32_t', possible loss of data
15300atomic_cpp/molc.cpp(1918): warning C4244: '=': conversion from 'double' to 'float32_t', possible loss of data
15301atomic_cpp/molc.cpp(1921): warning C4244: '=': conversion from 'double' to 'float32_t', possible loss of data
15302atomic_cpp/molc.cpp(1922): warning C4244: '=': conversion from 'double' to 'float32_t', possible loss of data
15303atomic_cpp/molc.cpp(1923): warning C4244: '=': conversion from 'double' to 'float32_t', possible loss of data
15304atomic_cpp/molc.cpp(3157): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
15305atomic_cpp/molc.cpp(3684): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
15306atomic_cpp/molc.cpp(3971): warning C4101: 'e': unreferenced local variable
15307atomic_cpp/molc.cpp(4505): warning C4267: '=': conversion from 'size_t' to 'int32_t', possible loss of data
15308atomic_cpp/molc.cpp(5214): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
15309atomic_cpp/molc.cpp(5779): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
15310atomic_cpp/molc.cpp(1379): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
15311atomic_cpp/molc.cpp(1406): note: see reference to function template instantiation 'void affine_transform<atomstruct::Coord,double>(const C &,T *,C &)' being compiled
15312 with
15313 [
15314 C=atomstruct::Coord,
15315 T=double
15316 ]
15317atomic_cpp/molc.cpp(1393): warning C4244: '=': conversion from 'T' to '_Ty', possible loss of data
15318 with
15319 [
15320 T=double
15321 ]
15322 and
15323 [
15324 _Ty=float
15325 ]
15326atomic_cpp/molc.cpp(1411): note: see reference to function template instantiation 'void transform_u_aniso<double>(const std::vector<float,std::allocator<float>> *,T *,std::vector<float,std::allocator<float>> &)' being compiled
15327 with
15328 [
15329 T=double
15330 ]
15331atomic_cpp/molc.cpp(1398): warning C4244: '=': conversion from 'T' to '_Ty', possible loss of data
15332 with
15333 [
15334 T=double
15335 ]
15336 and
15337 [
15338 _Ty=float
15339 ]
15340 Creating library src\libmolc.lib and object src\libmolc.exp
15341Generating code
15342Finished generating code
15343C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
15344!!
15345
15346 ********************************************************************************
15347 Please consider removing the following classifiers in favor of a SPDX license expression:
15348
15349 License :: Free for non-commercial use
15350
15351 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
15352 ********************************************************************************
15353
15354!!
15355 self._finalize_license_expression()
15356running build
15357running build_py
15358creating build\lib.win-amd64-cpython-311\chimerax\atomic
15359copying src\args.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15360copying src\bond_geom.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15361copying src\changes.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15362copying src\chirality.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15363copying src\cmd.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15364copying src\colors.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15365copying src\contextmenu.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15366copying src\ctypes_support.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15367copying src\idatm.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15368copying src\inspectors.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15369copying src\molarray.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15370copying src\molc.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15371copying src\molobject.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15372copying src\molsurf.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15373copying src\options.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15374copying src\path.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15375copying src\pbgroup.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15376copying src\pdbmatrices.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15377copying src\presets.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15378copying src\ribbon.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15379copying src\selectors.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15380copying src\seq_support.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15381copying src\settings.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15382copying src\shapedrawing.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15383copying src\sse.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15384copying src\structure.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15385copying src\struct_edit.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15386copying src\triggers.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15387copying src\widgets.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15388copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\atomic
15389copying src\cymol.pyx -> build\lib.win-amd64-cpython-311\chimerax\atomic
15390copying src\cytmpl.pyx -> build\lib.win-amd64-cpython-311\chimerax\atomic
15391copying src\connect.pyx -> build\lib.win-amd64-cpython-311\chimerax\atomic
15392copying src\libmolc.dll -> build\lib.win-amd64-cpython-311\chimerax\atomic
15393copying src\libmolc.lib -> build\lib.win-amd64-cpython-311\chimerax\atomic
15394running build_ext
15395building 'chimerax.atomic.cymol' extension
15396building 'chimerax.atomic.cytmpl' extension
15397building 'chimerax.atomic.connect' extension
15398building 'chimerax.atomic._ribbons' extension
15399creating build\temp.win-amd64-cpython-311\Release\atomic_cpp
15400"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpatomic_cpp/cytmpl.cpp /Fobuild\temp.win-amd64-cpython-311\Release\atomic_cpp\cytmpl.obj
15401"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpatomic_cpp/connect.cpp /Fobuild\temp.win-amd64-cpython-311\Release\atomic_cpp\connect.obj
15402cytmpl.cpp
15403connect.cpp
15404"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpatomic_cpp/cymol.cpp /Fobuild\temp.win-amd64-cpython-311\Release\atomic_cpp\cymol.obj
15405cymol.cpp
15406creating build\temp.win-amd64-cpython-311\Release\ribbon_cpp
15407"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpribbon_cpp/normals.cpp /Fobuild\temp.win-amd64-cpython-311\Release\ribbon_cpp\normals.obj
15408normals.cpp
15409The contents of <string_view> are available only with C++17 or later.
15410The contents of <string_view> are available only with C++17 or later.
15411ribbon_cpp/normals.cpp(195): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
15412ribbon_cpp/normals.cpp(207): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
15413ribbon_cpp/normals.cpp(236): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
15414ribbon_cpp/normals.cpp(258): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
15415ribbon_cpp/normals.cpp(326): warning C4244: 'initializing': conversion from 'int' to 'float', possible loss of data
15416ribbon_cpp/normals.cpp(433): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
15417ribbon_cpp/normals.cpp(477): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
15418C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
15419c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15420C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
15421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
15422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
15424C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15425C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15426C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
15427C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
15428C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15429C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15430C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
15431C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15432C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15433C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15434C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
15435c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15436C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
15437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
15438c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15439C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
15440C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15441C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15442C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
15443C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
15444C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15445C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15446C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
15447C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15448C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15450C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
15451C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
15452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
15453C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
15454C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
15455c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15456C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
15457C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
15458c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15459C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
15460C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15461C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15462C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
15463C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
15464C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15465C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15466C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
15467C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15468C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
15469C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
15470C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15471C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15472C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15474C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15475C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15476"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpribbon_cpp/parse.cpp /Fobuild\temp.win-amd64-cpython-311\Release\ribbon_cpp\parse.obj
15477C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
15478c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15479C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
15480C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
15481c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15482C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
15483C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15484C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15485C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15486C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15487C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15488C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15489C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15490C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
15491C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15492C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15493C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15494C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15495C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15496C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15497C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15499C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15500c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15501C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15502C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
15503C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15504c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15505C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15506c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15507C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15508c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15509C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15510c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15511C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15512c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15513C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15514c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15515C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15516C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15517
15518c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15519C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15520C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15521
15522C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15523C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15524c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15526c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15527C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15528c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15529C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15530c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15531C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15532c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15533C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15534c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15535C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15536c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15537C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15538c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15540c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15542c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15543C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15544c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15545C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15546c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15547C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15548c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15550c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15552c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15553C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15554c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15555C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15556c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15557C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15558c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15559C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15560c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15562c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15563C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15564c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15565C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15566c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15567C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15568c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15569C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15570c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15571C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15572c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15573C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15574c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15575C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15576c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15577C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15578c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15579C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15580c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15581C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15582c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15583C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15584c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15585C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'C
15586:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of dataC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15587
15588c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15589
15590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15591c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15592C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15593c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
15595c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
15597C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15598c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15599C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15600c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15601C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15602C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
15603parse.cpp
15604C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15605C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
15606C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15607CC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>':\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15608
15609C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15610C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15611c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15612C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15613c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15614C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15615c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15616C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15617c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15618C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15619c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15620C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15621c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15622C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15623c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15624C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15625c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15626C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15627c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15628C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15629c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15630C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15631c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15632C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15633c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15634C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15635c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15636C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15637c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15638C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15639c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15640C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of dataC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15641
15642c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15643C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15644c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15645C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15646c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15647C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15648c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15649C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15650c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15651C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15652c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15653C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15654c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15655C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15656c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15657C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15658c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15659C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15660c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15662c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15663C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15664c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15665C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15666c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15667C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15668c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15669C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15670c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15671C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15672c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15673C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15674c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15675C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15676c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15677C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15678c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15679C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15680c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15681C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15682c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15683C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15684c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15685C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15686c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15687C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15688c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15689C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15690c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15691C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15692c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15693C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15694c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15695C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15696C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15697C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15698C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
15699C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
15700C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
15701C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
15702c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15703C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
15704C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15705C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
15706CC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator':\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15707
15708C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
15709
15710C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'C
15711:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
15712
15713c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15714C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15715c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15716C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15717c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15718C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15719c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15720C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15721c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15722C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15723c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15724C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15725c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15726C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15727c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15728C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15729c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15730C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15731c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15732C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15733c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15734C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15735c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15736C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15737c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15738C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15739c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15740C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15741c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15742C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15743c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15744C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15745c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15746C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15747c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15748C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15749c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15750C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15751c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15752C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15753c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15754C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15755c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15756C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15757c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15758C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15759c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15760C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15761c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15762C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15763c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15764C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15765c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15766C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15767c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15768C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15769c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15770C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15771c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15772C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15773c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15774C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15775c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15776C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15777c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15778C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15779c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15780C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15781c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15782C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15783c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15784C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15785c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15786C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15787c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15788C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15789c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15790C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15791c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15792C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15793c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15794C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
15795c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15796C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
15797C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
15798C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
15799C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
15800C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
15801c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15802C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
15803C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15804C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15805C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15806C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15807C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15808C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15809C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15810C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
15811C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15812C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15813C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15814C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15815C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15816C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
15817C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15818C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15819C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15820C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15821C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15822c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15823C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15824C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
15825C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15826C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'C
15827:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
15828C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15829
15830C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
15831C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15832C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15833C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15834C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15835C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15836C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
15837C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
15838c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15839C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
15840C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15841c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15842C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15843c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15844C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15845C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15846C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15847C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
15848C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
15849C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
15850C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15851C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
15852C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15853C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15854C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15855C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
15856C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
15857c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15858C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15859C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15860C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15861C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15862C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15863C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
15864C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15865c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15866C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15867c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15868C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15869C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
15870C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15871C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
15872C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15873C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
15874C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
15875C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15876C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15877C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
15878C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15879C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
15880c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15881C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
15882C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15883C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
15884C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
15885C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
15886C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15887C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
15888C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
15889c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15890C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
15891C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15892C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
15893C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
15894C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
15895C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
15896c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15897C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiledC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15898
15899C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
15900C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15901C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
15902C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
15903C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
15904C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
15905c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15906C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
15907C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15908C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
15909C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15910C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
15911C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15912C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
15913C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15914C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15915C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15916C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15917C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
15918c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15919C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
15920C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15921C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
15922C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15923C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
15924C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15925C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
15926C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15927c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15928C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15929C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15930C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15931C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
15932C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
15933c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15934C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
15935C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15936C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
15937C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
15938c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15939C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
15940C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15941C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
15942C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15943C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
15944C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15945C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
15946C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15947C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15948C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15949C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15950C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
15951C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
15952C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
15953c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15954C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
15955C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'C
15956:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15957
15958C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
15959
15960C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15961C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
15962C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15963C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
15964C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
15965C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
15966C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15967C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
15968C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15969C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
15970C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15971c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15972C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15973C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15974C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15975C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15976C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15977C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
15978C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
15979C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
15980C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
15981C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
15982C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15983C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
15984C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15985C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
15986C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
15987c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15988C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
15989C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15990C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
15991C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15992c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
15993C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
15994C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
15995C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15996C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
15997C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
15998C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
15999C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
16000c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16001C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
16002C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16003C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16004C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16005C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16006C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16007c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16008C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16009C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16010C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16011C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
16012C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16013C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16014C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16015C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
16016C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16017C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16018C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16019C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16020C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16021C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
16022c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16023C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
16024C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16025C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
16026C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of datac:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16027
16028C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
16029C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16030C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16031
16032c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16033C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16034C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
16035c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16036C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16037c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16038C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16039c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16040C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16041C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16042C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16043C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
16044C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16045C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16046C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16047C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16048C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16049C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'C
16050:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16051C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
16052C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16053C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16054C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16055C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
16056C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16057C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16058C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16059C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16060C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16061C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16062C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16063C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16064C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16065C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16066C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16067C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16068C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16069C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
16070C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16071C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16072C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
16073C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16074C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
16075C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16076C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16077C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16078C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16079C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16080c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16081C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16082C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16083C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16084C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16085C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16086C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16087C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
16088c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16089C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
16090C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16091C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16092C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
16093C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16094C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
16095C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16096C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16097C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
16098c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16099C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
16100c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16101C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
16102C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16103C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
16104C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16105C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16106C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
16107C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
16108
16109C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
16110c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16111C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
16112C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16113C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16114C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16115C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16116C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16117
16118c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
16119
16120C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16121C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16122c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16123
16124C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
16125c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16126C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
16127C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
16128C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
16129C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
16130c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16131C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
16132C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16133C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16134C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16135CC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>':\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
16136
16137C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
16138C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16139C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
16140c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'C
16141:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16142C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
16143c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16144CC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue':\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
16145
16146C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
16147
16148C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
16149c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16150C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
16151C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16152C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
16153C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16154C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
16155c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
16156C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
16157C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
16158c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16159C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
16160C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
16161c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16162C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
16163C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16164C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
16165C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16166C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16167c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16168C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16169C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16170c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16171C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16172c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16173C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16174c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16175C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16176C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16177C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16178C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
16179C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16180C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16181C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16182C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16183C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16184C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16185C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16186C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16187C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16188C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
16189C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16190C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16191C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16192C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16193C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16194C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16195C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16196C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16197C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16198C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16199C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16200C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16201C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16202C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
16203C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16204C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16205C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
16206C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16207c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16208C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
16209C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
16210C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
16211c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16212C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
16213C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
16214C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
16215C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
16216c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16217C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
16218C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
16219C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16220C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
16221C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
16222C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
16223C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
16224C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
16225C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
16226C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
16227atomic_cpp/connect.cpp(6512): warning C4551: function call missing argument list
16228atomic_cpp/connect.cpp(6519): warning C4551: function call missing argument list
16229atomic_cpp/cymol.cpp(6173): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16230atomic_cpp/cytmpl.cpp(9088): warning C4551: function call missing argument list
16231atomic_cpp/cytmpl.cpp(9089): warning C4551: function call missing argument list
16232atomic_cpp/cytmpl.cpp(9090): warning C4551: function call missing argument list
16233atomic_cpp/cytmpl.cpp(9213): warning C4551: function call missing argument list
16234atomic_cpp/cymol.cpp(11375): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
16235atomic_cpp/cytmpl.cpp(11331): warning C4551: function call missing argument list
16236atomic_cpp/cytmpl.cpp(11338): warning C4551: function call missing argument list
16237atomic_cpp/cymol.cpp(14334): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16238atomic_cpp/cymol.cpp(14573): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16239atomic_cpp/cymol.cpp(15568): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16240atomic_cpp/cymol.cpp(16450): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16241C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
16242c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16243C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
16244C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16245C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
16246C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16247C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
16248C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16249C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16250C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
16251c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16252C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
16253C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16254C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
16255C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16256C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
16257C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16258c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16259C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16260c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16261C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16262c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16263C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16264c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16265C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16266c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16267C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16268c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16269C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16270c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16271C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16272c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16273C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16274c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16275C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16276c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16277C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16278c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16279C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16280c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16281C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16282c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16283C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16284c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16285C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16286c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16287C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16288c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16289C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16290c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16291C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16292c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16293C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16294c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16295C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16296c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16297C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16298c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16299C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16300c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16301C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16302c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16303C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16304c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16305C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16306c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16307C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16308c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16309C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16311C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16312c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16313C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16314c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16315C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16316c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16317C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16318c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16319C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16320c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16321C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16322c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16323C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16324c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16325C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16326c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16327C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16328c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16329C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16330c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16331C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16332c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16333C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16334c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16335C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16336c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16337C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16338c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16339C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16340c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16341atomic_cpp/cymol.cpp(26223): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16342C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
16343c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16344C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
16345C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16346C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16347C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16348c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16349C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16350c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16351C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16352c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16353C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16354C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16355C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16356C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
16357C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16358C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16359C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16360C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16361C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16362C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16363C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16364C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16365C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16366C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
16367C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16368C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16369C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16370C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16371C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16372C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16373C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16374C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16375C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16376C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16377C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16378C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16379C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16380C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>'
16381C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16382C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
16383c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16384C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
16385C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
16386C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
16387C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
16388C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
16389C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
16390C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
16391C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
16392C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16393C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
16394C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
16395C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
16396C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
16397C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
16398C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
16399atomic_cpp/cymol.cpp(34747): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16400C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
16401c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16402C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
16403C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'atomic_cpp/cymol.cpp(36559): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
16404
16405C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
16406C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
16408C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
16410C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16411C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
16412C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16413C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
16414C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16415C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
16416C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16417C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
16418C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16419c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16420C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16424c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16425C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16426C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
16427C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16428C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
16429C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16430C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16431C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
16432C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16433C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
16434C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16435C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
16436C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
16438C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
16439c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16440C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
16441C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
16442C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
16443atomic_cpp/cymol.cpp(46572): warning C4551: function call missing argument list
16444atomic_cpp/cymol.cpp(46579): warning C4551: function call missing argument list
16445C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
16446c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16447C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
16448C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
16449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
16450C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
16451C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
16452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
16453c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16454C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
16455C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16456C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16457atomic_cpp/cymol.cpp(48385): warning C4551: function call missing argument list
16458atomic_cpp/cymol.cpp(48386): warning C4551: function call missing argument list
16459atomic_cpp/cymol.cpp(48387): warning C4551: function call missing argument list
16460atomic_cpp/cymol.cpp(48510): warning C4551: function call missing argument list
16461C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16462C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
16463C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16464C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
16465C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16466C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
16467C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16468C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
16469C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16470C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
16471C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16472C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
16473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16474c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16475C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16476C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
16477C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
16478c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16479C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
16480atomic_cpp/cymol.cpp(53202): warning C4551: function call missing argument list
16481atomic_cpp/cymol.cpp(53220): warning C4551: function call missing argument list
16482atomic_cpp/cymol.cpp(53221): warning C4551: function call missing argument list
16483atomic_cpp/cymol.cpp(53222): warning C4551: function call missing argument list
16484C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16485C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
16486C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16487C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16488C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16489C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16490C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16491C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16492C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
16493c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16494C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
16495C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16496C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
16497C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
16499C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16500C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16501C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16502C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16503C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16504c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16505C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16506C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16507C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16508C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16509C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16510C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
16511C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16512C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
16513c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16514C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
16515C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
16516C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16517C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
16518ribbon_cpp/parse.cpp(68): warning C4244: '=': conversion from 'npy_intp' to 'int', possible loss of data
16519ribbon_cpp/parse.cpp(100): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16520"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libpdbconnect.lib /EXPORT:PyInit_connect build\temp.win-amd64-cpython-311\Release\atomic_cpp\connect.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\atomic\connect.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\atomic_cpp\connect.cp311-win_amd64.lib
16521 Creating library build\temp.win-amd64-cpython-311\Release\atomic_cpp\connect.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\atomic_cpp\connect.cp311-win_amd64.exp
16522Generating code
16523"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib /EXPORT:PyInit_cytmpl build\temp.win-amd64-cpython-311\Release\atomic_cpp\cytmpl.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\atomic\cytmpl.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\atomic_cpp\cytmpl.cp311-win_amd64.lib
16524 Creating library build\temp.win-amd64-cpython-311\Release\atomic_cpp\cytmpl.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\atomic_cpp\cytmpl.cp311-win_amd64.exp
16525Generating code
16526Finished generating code
16527"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib /EXPORT:PyInit_cymol build\temp.win-amd64-cpython-311\Release\atomic_cpp\cymol.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\atomic\cymol.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\atomic_cpp\cymol.cp311-win_amd64.lib
16528"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpribbon_cpp/ribbons.cpp /Fobuild\temp.win-amd64-cpython-311\Release\ribbon_cpp\ribbons.obj
16529ribbons.cpp
16530 Creating library build\temp.win-amd64-cpython-311\Release\atomic_cpp\cymol.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\atomic_cpp\cymol.cp311-win_amd64.exp
16531Generating code
16532"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpribbon_cpp/spline.cpp /Fobuild\temp.win-amd64-cpython-311\Release\ribbon_cpp\spline.obj
16533spline.cpp
16534Finished generating code
16535C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
16536c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16537C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
16538C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
16539c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16540C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
16541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
16542C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
16543C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
16544C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
16545C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
16546C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
16547C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
16548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
16550C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
16551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16552C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
16553C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16554C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
16555C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16556C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16557C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
16558c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16559C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
16560C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
16562C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16563C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
16564C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16565c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16566C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16567c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16568C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16569c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16570C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16571c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16572C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16573c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16574C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16575c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16576C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16577c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16579c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16581c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16582C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16583c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16584C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16585c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16586C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16587c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16588C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16589c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16591c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16592C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16593c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16595c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16597c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16598C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16599c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16600C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16601c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16602C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16603c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16604C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16605c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16606C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16607c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16608C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16609c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16610C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16611c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16612C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16613c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16614C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16615c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16616C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16617c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16618C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16619c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16620C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16621c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16622C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16623c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16624C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16625c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16626C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16627c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16628C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16629c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16630C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16631c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16632C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16633c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16634C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16635c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16636C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16637c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16638C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16639c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16640C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16641c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16642C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16643c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16644C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16645c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16646C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16647c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16648C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
16649C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
16650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
16651C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
16652C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
16653c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16654C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
16655C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16656C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
16657C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16658C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
16659C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16660C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
16661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16662C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
16663C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16664C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
16665C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16666C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
16667C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16668C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
16669C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
16670c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16671C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16672C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16673c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16674C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16675c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16676C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16677C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
16678C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
16679C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
16680C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16681C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16682C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
16683C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16684C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
16685C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16686C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
16687C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
16688C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
16689C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
16690c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16691C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
16692C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
16693C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
16694C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
16695c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16696C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
16697C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
16698C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
16699C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
16700C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
16701C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
16702c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16703C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
16704C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16705C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16706C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16707C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
16708C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16709C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
16710C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16711C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
16712C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16713C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
16714C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16715C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
16716C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16717C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
16718C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16719c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16720C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
16721C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
16722C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
16723c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16724C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
16725C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16726C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
16727C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16728C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16729C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
16730C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
16731C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16732C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16733C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
16734c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16735C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
16736C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16737C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
16738C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16739C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
16740C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16741C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16742C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16743C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
16744C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16745c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16746C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16747C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16748C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
16749C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16750C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16751C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
16752C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16753C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
16754c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16755C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
16756C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16757C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16758C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16759c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16760C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16761c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16762C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16763c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16764C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16765C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16766C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16767C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
16768C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16769C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16770C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16771C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16772C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16773C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16774C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16775C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16776C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16777C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
16778C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16779C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16780C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16781C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16782C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16783C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16784C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16785C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16786C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16787C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16788C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16789C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16790C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16791C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
16792C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16793C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
16794c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16795C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
16796C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
16797C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
16798C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
16799ribbon_cpp/spline.cpp(66): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16800ribbon_cpp/spline.cpp(67): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16801ribbon_cpp/spline.cpp(68): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
16802ribbon_cpp/spline.cpp(69): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
16803ribbon_cpp/spline.cpp(70): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
16804ribbon_cpp/spline.cpp(71): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
16805ribbon_cpp/spline.cpp(267): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
16806ribbon_cpp/spline.cpp(371): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
16807ribbon_cpp/spline.cpp(452): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
16808ribbon_cpp/spline.cpp(490): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
16809ribbon_cpp/spline.cpp(585): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
16810ribbon_cpp/spline.cpp(587): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
16811ribbon_cpp/spline.cpp(618): warning C4244: '=': conversion from 'atomstruct::Real' to 'float', possible loss of data
16812ribbon_cpp/spline.cpp(619): warning C4244: '=': conversion from 'atomstruct::Real' to 'float', possible loss of data
16813ribbon_cpp/spline.cpp(620): warning C4244: '=': conversion from 'atomstruct::Real' to 'float', possible loss of data
16814ribbon_cpp/spline.cpp(720): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
16815ribbon_cpp/spline.cpp(771): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16816ribbon_cpp/spline.cpp(772): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16817ribbon_cpp/spline.cpp(773): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16818ribbon_cpp/spline.cpp(800): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
16819ribbon_cpp/spline.cpp(801): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
16820ribbon_cpp/spline.cpp(820): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16821ribbon_cpp/spline.cpp(821): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16822ribbon_cpp/spline.cpp(822): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16823ribbon_cpp/spline.cpp(843): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16824ribbon_cpp/spline.cpp(844): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16825ribbon_cpp/spline.cpp(845): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16826ribbon_cpp/spline.cpp(867): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16827ribbon_cpp/spline.cpp(868): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16828ribbon_cpp/spline.cpp(869): warning C4244: '=': conversion from 'const atomstruct::Real' to 'float', possible loss of data
16829c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\utility(186): warning C4244: 'initializing': conversion from '_Ty' to '_Ty2', possible loss of data
16830 with
16831 [
16832 _Ty=double
16833 ]
16834 and
16835 [
16836 _Ty2=float
16837 ]
16838ribbon_cpp/spline.cpp(518): note: see reference to function template instantiation 'std::pair<const std::string,float>::pair<const char(&)[2],double,0>(_Other1,_Other2 &&) noexcept(false)' being compiled
16839 with
16840 [
16841 _Other1=const char (&)[2],
16842 _Other2=double
16843 ]
16844ribbon_cpp/spline.cpp(504): note: see reference to function template instantiation 'std::pair<const std::string,float>::pair<const char(&)[2],double,0>(_Other1,_Other2 &&) noexcept(false)' being compiled
16845 with
16846 [
16847 _Other1=const char (&)[2],
16848 _Other2=double
16849 ]
16850"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpribbon_cpp/xsection.cpp /Fobuild\temp.win-amd64-cpython-311\Release\ribbon_cpp\xsection.obj
16851xsection.cpp
16852C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
16853c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16854C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
16855C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16856C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
16857C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16858C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
16859C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
16860C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16861C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
16862c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16863C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
16864C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16865C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
16866C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16867C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
16868C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16869c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16870C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16871c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16872C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16873c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16874C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16875c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16876C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16877c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16878C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16879c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16880C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16881c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16882C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16883c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16884C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16885c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16886C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16887c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16888C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16889c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16890C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16891c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16892C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16893c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16894C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16895c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16896C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16897c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16898C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16899c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16900C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16901c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16902C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16903c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16904C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16905c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16906C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16907c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16908C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16909c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16910C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16911c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16912C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16913c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16914C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16915c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16916C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16917c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16918C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16919c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16920C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16921c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16922C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16923c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16924C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16925c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16926C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16927c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16928C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16929c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16930C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16931c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16932C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16933c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16934C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16935c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16936C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16937c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16938C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16939c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16940C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16941c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16942C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16943c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16944C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16945c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16946C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16947c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16948C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16949c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16950C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
16951c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16952C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
16953c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16954C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
16955C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16956C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
16957C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16958c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16959C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16960c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16961C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16962c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16963C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16964C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16965C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16966C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
16967C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16968C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16969C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16970C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16971C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16972C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16973C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16974C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16975C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16976C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<std::string>>'
16977C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16978C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16979C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16980C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16981C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16982C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16983C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16984C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16985C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16986C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16987C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16988C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
16989C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
16990C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>>>>'
16991C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
16992C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
16993c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
16994C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
16995C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
16996C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
16997C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
16998C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
16999C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
17000C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
17001C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
17002C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
17003C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
17004C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
17005Finished generating code
17006C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
17007C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
17008C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
17009C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
17010C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
17011c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17012C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
17013C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17014C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
17015C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17016C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
17017C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17018C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::AtomName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,char>>>'
17019C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17020C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
17021C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17022C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
17023C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17024C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
17025C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17026C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
17027C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
17028c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17029C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
17030C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
17031c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17032C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
17033c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17034C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
17035C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
17036C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
17037C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
17038C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
17039C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
17040C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
17041C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
17042C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
17043C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
17044C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
17045C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
17046C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
17047C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
17048c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17049C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
17050C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
17051C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
17052C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
17053c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17054C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
17055C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
17056C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
17057C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
17058C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
17059C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
17060c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17061C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
17062C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17063C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
17064C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17065C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
17066C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17067C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
17068C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17069C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
17070C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17071C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
17072C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17073C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
17074C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17075C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
17076C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17077c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17078C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
17079C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::AtomName,std::allocator<std::string>>>>>'
17080C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
17081c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17082C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
17083C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
17084C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
17085C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
17086C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
17087C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
17088C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
17089C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
17090C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
17091C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
17092c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17093C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
17094C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
17095C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
17096C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
17097C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(104): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
17098C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
17099C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
17100C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
17101C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
17102C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
17103c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17104C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
17105C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(55): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
17106C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
17107C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
17108C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
17109C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
17110C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
17111C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
17112c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
17113C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
17114C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
17115C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
17116C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
17117ribbon_cpp/xsection.cpp(99): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
17118ribbon_cpp/xsection.cpp(213): warning C4003: not enough arguments for function-like macro invocation 'import_array1'
17119ribbon_cpp/xsection.cpp(297): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
17120ribbon_cpp/xsection.cpp(333): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
17121ribbon_cpp/xsection.cpp(384): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
17122ribbon_cpp/xsection.cpp(447): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
17123ribbon_cpp/xsection.cpp(514): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
17124ribbon_cpp/xsection.cpp(532): warning C4244: '+=': conversion from 'int64_t' to 'int', possible loss of data
17125ribbon_cpp/xsection.cpp(534): warning C4244: '+=': conversion from 'int64_t' to 'int', possible loss of data
17126ribbon_cpp/xsection.cpp(623): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
17127ribbon_cpp/xsection.cpp(690): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
17128ribbon_cpp/xsection.cpp(705): warning C4244: '+=': conversion from 'int64_t' to 'int', possible loss of data
17129ribbon_cpp/xsection.cpp(707): warning C4244: '+=': conversion from 'int64_t' to 'int', possible loss of data
17130ribbon_cpp/xsection.cpp(808): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
17131ribbon_cpp/xsection.cpp(809): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
17132ribbon_cpp/xsection.cpp(907): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
17133ribbon_cpp/xsection.cpp(1123): warning C4244: 'initializing': conversion from 'Py_ssize_t' to 'int', possible loss of data
17134ribbon_cpp/xsection.cpp(1186): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
17135ribbon_cpp/xsection.cpp(1185): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
17136ribbon_cpp/xsection.cpp(1243): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
17137ribbon_cpp/xsection.cpp(1242): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
17138"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libarrays.lib /EXPORT:PyInit__ribbons build\temp.win-amd64-cpython-311\Release\ribbon_cpp\normals.obj build\temp.win-amd64-cpython-311\Release\ribbon_cpp\parse.obj build\temp.win-amd64-cpython-311\Release\ribbon_cpp\ribbons.obj build\temp.win-amd64-cpython-311\Release\ribbon_cpp\spline.obj build\temp.win-amd64-cpython-311\Release\ribbon_cpp\xsection.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\atomic\_ribbons.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\ribbon_cpp\_ribbons.cp311-win_amd64.lib
17139 Creating library build\temp.win-amd64-cpython-311\Release\ribbon_cpp\_ribbons.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\ribbon_cpp\_ribbons.cp311-win_amd64.exp
17140Generating code
17141Finished generating code
17142running bdist_wheel
17143installing to build\bdist.win-amd64\wheel
17144running install
17145running install_lib
17146running build_ext
17147creating build\bdist.win-amd64\wheel
17148creating build\bdist.win-amd64\wheel\chimerax
17149creating build\bdist.win-amd64\wheel\chimerax\atomic
17150copying build\lib.win-amd64-cpython-311\chimerax\atomic\args.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17151copying build\lib.win-amd64-cpython-311\chimerax\atomic\bond_geom.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17152copying build\lib.win-amd64-cpython-311\chimerax\atomic\changes.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17153copying build\lib.win-amd64-cpython-311\chimerax\atomic\chirality.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17154copying build\lib.win-amd64-cpython-311\chimerax\atomic\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17155copying build\lib.win-amd64-cpython-311\chimerax\atomic\colors.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17156copying build\lib.win-amd64-cpython-311\chimerax\atomic\connect.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17157copying build\lib.win-amd64-cpython-311\chimerax\atomic\connect.pyx -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17158copying build\lib.win-amd64-cpython-311\chimerax\atomic\contextmenu.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17159copying build\lib.win-amd64-cpython-311\chimerax\atomic\ctypes_support.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17160copying build\lib.win-amd64-cpython-311\chimerax\atomic\cymol.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17161copying build\lib.win-amd64-cpython-311\chimerax\atomic\cymol.pyx -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17162copying build\lib.win-amd64-cpython-311\chimerax\atomic\cytmpl.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17163copying build\lib.win-amd64-cpython-311\chimerax\atomic\cytmpl.pyx -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17164copying build\lib.win-amd64-cpython-311\chimerax\atomic\idatm.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17165copying build\lib.win-amd64-cpython-311\chimerax\atomic\inspectors.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17166copying build\lib.win-amd64-cpython-311\chimerax\atomic\libmolc.dll -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17167copying build\lib.win-amd64-cpython-311\chimerax\atomic\libmolc.lib -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17168copying build\lib.win-amd64-cpython-311\chimerax\atomic\molarray.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17169copying build\lib.win-amd64-cpython-311\chimerax\atomic\molc.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17170copying build\lib.win-amd64-cpython-311\chimerax\atomic\molobject.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17171copying build\lib.win-amd64-cpython-311\chimerax\atomic\molsurf.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17172copying build\lib.win-amd64-cpython-311\chimerax\atomic\options.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17173copying build\lib.win-amd64-cpython-311\chimerax\atomic\path.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17174copying build\lib.win-amd64-cpython-311\chimerax\atomic\pbgroup.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17175copying build\lib.win-amd64-cpython-311\chimerax\atomic\pdbmatrices.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17176copying build\lib.win-amd64-cpython-311\chimerax\atomic\presets.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17177copying build\lib.win-amd64-cpython-311\chimerax\atomic\ribbon.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17178copying build\lib.win-amd64-cpython-311\chimerax\atomic\selectors.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17179copying build\lib.win-amd64-cpython-311\chimerax\atomic\seq_support.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17180copying build\lib.win-amd64-cpython-311\chimerax\atomic\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17181copying build\lib.win-amd64-cpython-311\chimerax\atomic\shapedrawing.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17182copying build\lib.win-amd64-cpython-311\chimerax\atomic\sse.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17183copying build\lib.win-amd64-cpython-311\chimerax\atomic\structure.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17184copying build\lib.win-amd64-cpython-311\chimerax\atomic\struct_edit.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17185copying build\lib.win-amd64-cpython-311\chimerax\atomic\triggers.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17186copying build\lib.win-amd64-cpython-311\chimerax\atomic\widgets.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17187copying build\lib.win-amd64-cpython-311\chimerax\atomic\_ribbons.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17188copying build\lib.win-amd64-cpython-311\chimerax\atomic\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\atomic
17189running install_egg_info
17190running egg_info
17191creating ChimeraX_Atomic.egg-info
17192writing ChimeraX_Atomic.egg-info\PKG-INFO
17193writing dependency_links to ChimeraX_Atomic.egg-info\dependency_links.txt
17194writing requirements to ChimeraX_Atomic.egg-info\requires.txt
17195writing top-level names to ChimeraX_Atomic.egg-info\top_level.txt
17196writing manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt'
17197dependency C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h won't be automatically included in the manifest: the path must be relative
17198reading manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt'
17199writing manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt'
17200Copying ChimeraX_Atomic.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Atomic-1.60.17-py3.11.egg-info
17201running install_scripts
17202C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
17203 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
17204creating build\bdist.win-amd64\wheel\chimerax_atomic-1.60.17.dist-info\WHEEL
17205creating 'dist\chimerax_atomic-1.60.17-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
17206adding 'chimerax/atomic/__init__.py'
17207adding 'chimerax/atomic/_ribbons.cp311-win_amd64.pyd'
17208adding 'chimerax/atomic/args.py'
17209adding 'chimerax/atomic/bond_geom.py'
17210adding 'chimerax/atomic/changes.py'
17211adding 'chimerax/atomic/chirality.py'
17212adding 'chimerax/atomic/cmd.py'
17213adding 'chimerax/atomic/colors.py'
17214adding 'chimerax/atomic/connect.cp311-win_amd64.pyd'
17215adding 'chimerax/atomic/connect.pyx'
17216adding 'chimerax/atomic/contextmenu.py'
17217adding 'chimerax/atomic/ctypes_support.py'
17218adding 'chimerax/atomic/cymol.cp311-win_amd64.pyd'
17219adding 'chimerax/atomic/cymol.pyx'
17220adding 'chimerax/atomic/cytmpl.cp311-win_amd64.pyd'
17221adding 'chimerax/atomic/cytmpl.pyx'
17222adding 'chimerax/atomic/idatm.py'
17223adding 'chimerax/atomic/inspectors.py'
17224adding 'chimerax/atomic/libmolc.dll'
17225adding 'chimerax/atomic/libmolc.lib'
17226adding 'chimerax/atomic/molarray.py'
17227adding 'chimerax/atomic/molc.py'
17228adding 'chimerax/atomic/molobject.py'
17229adding 'chimerax/atomic/molsurf.py'
17230adding 'chimerax/atomic/options.py'
17231adding 'chimerax/atomic/path.py'
17232adding 'chimerax/atomic/pbgroup.py'
17233adding 'chimerax/atomic/pdbmatrices.py'
17234adding 'chimerax/atomic/presets.py'
17235adding 'chimerax/atomic/ribbon.py'
17236adding 'chimerax/atomic/selectors.py'
17237adding 'chimerax/atomic/seq_support.py'
17238adding 'chimerax/atomic/settings.py'
17239adding 'chimerax/atomic/shapedrawing.py'
17240adding 'chimerax/atomic/sse.py'
17241adding 'chimerax/atomic/struct_edit.py'
17242adding 'chimerax/atomic/structure.py'
17243adding 'chimerax/atomic/triggers.py'
17244adding 'chimerax/atomic/widgets.py'
17245adding 'chimerax_atomic-1.60.17.dist-info/METADATA'
17246adding 'chimerax_atomic-1.60.17.dist-info/WHEEL'
17247adding 'chimerax_atomic-1.60.17.dist-info/top_level.txt'
17248adding 'chimerax_atomic-1.60.17.dist-info/RECORD'
17249removing build\bdist.win-amd64\wheel
17250Distribution is in .\dist\ChimeraX_Atomic-1.60.17-cp311-cp311-win_amd64.whl
17251INFO:
17252
17253make sync
17254make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
17255cp -av dist/*.whl ../../../build/sync
17256'dist/chimerax_atomic-1.60.17-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_atomic-1.60.17-cp311-cp311-win_amd64.whl'
17257make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
17258make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/atomic'
17259make -C axes_planes build
17260make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
17261if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17262 echo "missing ChimeraX application's python"; exit 1; \
17263else \
17264 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17265fi
17266INFO:
17267Executing: devel build . exit true
17268C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
17269!!
17270
17271 ********************************************************************************
17272 Please consider removing the following classifiers in favor of a SPDX license expression:
17273
17274 License :: Free for non-commercial use
17275
17276 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17277 ********************************************************************************
17278
17279!!
17280 self._finalize_license_expression()
17281running build
17282running build_py
17283creating build\lib\chimerax\axes_planes
17284copying src\cmd.py -> build\lib\chimerax\axes_planes
17285copying src\settings.py -> build\lib\chimerax\axes_planes
17286copying src\__init__.py -> build\lib\chimerax\axes_planes
17287running bdist_wheel
17288installing to build\bdist.win-amd64\wheel
17289running install
17290running install_lib
17291creating build\bdist.win-amd64\wheel
17292creating build\bdist.win-amd64\wheel\chimerax
17293creating build\bdist.win-amd64\wheel\chimerax\axes_planes
17294copying build\lib\chimerax\axes_planes\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\axes_planes
17295copying build\lib\chimerax\axes_planes\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\axes_planes
17296copying build\lib\chimerax\axes_planes\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\axes_planes
17297running install_egg_info
17298running egg_info
17299creating ChimeraX_AxesPlanes.egg-info
17300writing ChimeraX_AxesPlanes.egg-info\PKG-INFO
17301writing dependency_links to ChimeraX_AxesPlanes.egg-info\dependency_links.txt
17302writing requirements to ChimeraX_AxesPlanes.egg-info\requires.txt
17303writing top-level names to ChimeraX_AxesPlanes.egg-info\top_level.txt
17304writing manifest file 'ChimeraX_AxesPlanes.egg-info\SOURCES.txt'
17305reading manifest file 'ChimeraX_AxesPlanes.egg-info\SOURCES.txt'
17306writing manifest file 'ChimeraX_AxesPlanes.egg-info\SOURCES.txt'
17307Copying ChimeraX_AxesPlanes.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AxesPlanes-2.4-py3.11.egg-info
17308running install_scripts
17309creating build\bdist.win-amd64\wheel\chimerax_axesplanes-2.4.dist-info\WHEEL
17310creating 'dist\chimerax_axesplanes-2.4-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
17311adding 'chimerax/axes_planes/__init__.py'
17312adding 'chimerax/axes_planes/cmd.py'
17313adding 'chimerax/axes_planes/settings.py'
17314adding 'chimerax_axesplanes-2.4.dist-info/METADATA'
17315adding 'chimerax_axesplanes-2.4.dist-info/WHEEL'
17316adding 'chimerax_axesplanes-2.4.dist-info/top_level.txt'
17317adding 'chimerax_axesplanes-2.4.dist-info/RECORD'
17318removing build\bdist.win-amd64\wheel
17319Distribution is in .\dist\ChimeraX_AxesPlanes-2.4-py3-none-any.whl
17320INFO:
17321
17322make sync
17323make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
17324cp -av dist/*.whl ../../../build/sync
17325'dist/chimerax_axesplanes-2.4-py3-none-any.whl' -> '../../../build/sync/chimerax_axesplanes-2.4-py3-none-any.whl'
17326make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
17327make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/axes_planes'
17328make -C basic_actions build
17329make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
17330if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17331 echo "missing ChimeraX application's python"; exit 1; \
17332else \
17333 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17334fi
17335INFO:
17336Executing: devel build . exit true
17337C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
17338!!
17339
17340 ********************************************************************************
17341 Please consider removing the following classifiers in favor of a SPDX license expression:
17342
17343 License :: Free for non-commercial use
17344
17345 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17346 ********************************************************************************
17347
17348!!
17349 self._finalize_license_expression()
17350running build
17351running build_py
17352creating build\lib\chimerax\basic_actions
17353copying src\cmd.py -> build\lib\chimerax\basic_actions
17354copying src\statemgr.py -> build\lib\chimerax\basic_actions
17355copying src\tool.py -> build\lib\chimerax\basic_actions
17356copying src\__init__.py -> build\lib\chimerax\basic_actions
17357creating build\lib\chimerax\basic_actions\lib
17358copying src\lib\atomhide.png -> build\lib\chimerax\basic_actions\lib
17359copying src\lib\atomshow.png -> build\lib\chimerax\basic_actions\lib
17360copying src\lib\colorpicker.svg -> build\lib\chimerax\basic_actions\lib
17361copying src\lib\downarrow.png -> build\lib\chimerax\basic_actions\lib
17362copying src\lib\hide.svg -> build\lib\chimerax\basic_actions\lib
17363copying src\lib\jquery-3.2.1.min.js -> build\lib\chimerax\basic_actions\lib
17364copying src\lib\jquery.tablesorter.combined.js -> build\lib\chimerax\basic_actions\lib
17365copying src\lib\ribhide.png -> build\lib\chimerax\basic_actions\lib
17366copying src\lib\ribshow.png -> build\lib\chimerax\basic_actions\lib
17367copying src\lib\show.svg -> build\lib\chimerax\basic_actions\lib
17368copying src\lib\surfhide.png -> build\lib\chimerax\basic_actions\lib
17369copying src\lib\surfshow.png -> build\lib\chimerax\basic_actions\lib
17370copying src\lib\uparrow.png -> build\lib\chimerax\basic_actions\lib
17371copying src\basic_actions.css -> build\lib\chimerax\basic_actions
17372copying src\basic_actions.html -> build\lib\chimerax\basic_actions
17373copying src\basic_actions.js -> build\lib\chimerax\basic_actions
17374running bdist_wheel
17375installing to build\bdist.win-amd64\wheel
17376running install
17377running install_lib
17378creating build\bdist.win-amd64\wheel
17379creating build\bdist.win-amd64\wheel\chimerax
17380creating build\bdist.win-amd64\wheel\chimerax\basic_actions
17381copying build\lib\chimerax\basic_actions\basic_actions.css -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions
17382copying build\lib\chimerax\basic_actions\basic_actions.html -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions
17383copying build\lib\chimerax\basic_actions\basic_actions.js -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions
17384copying build\lib\chimerax\basic_actions\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions
17385creating build\bdist.win-amd64\wheel\chimerax\basic_actions\lib
17386copying build\lib\chimerax\basic_actions\lib\atomhide.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17387copying build\lib\chimerax\basic_actions\lib\atomshow.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17388copying build\lib\chimerax\basic_actions\lib\colorpicker.svg -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17389copying build\lib\chimerax\basic_actions\lib\downarrow.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17390copying build\lib\chimerax\basic_actions\lib\hide.svg -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17391copying build\lib\chimerax\basic_actions\lib\jquery-3.2.1.min.js -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17392copying build\lib\chimerax\basic_actions\lib\jquery.tablesorter.combined.js -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17393copying build\lib\chimerax\basic_actions\lib\ribhide.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17394copying build\lib\chimerax\basic_actions\lib\ribshow.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17395copying build\lib\chimerax\basic_actions\lib\show.svg -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17396copying build\lib\chimerax\basic_actions\lib\surfhide.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17397copying build\lib\chimerax\basic_actions\lib\surfshow.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17398copying build\lib\chimerax\basic_actions\lib\uparrow.png -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions\lib
17399copying build\lib\chimerax\basic_actions\statemgr.py -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions
17400copying build\lib\chimerax\basic_actions\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions
17401copying build\lib\chimerax\basic_actions\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\basic_actions
17402running install_egg_info
17403running egg_info
17404creating ChimeraX_BasicActions.egg-info
17405writing ChimeraX_BasicActions.egg-info\PKG-INFO
17406writing dependency_links to ChimeraX_BasicActions.egg-info\dependency_links.txt
17407writing requirements to ChimeraX_BasicActions.egg-info\requires.txt
17408writing top-level names to ChimeraX_BasicActions.egg-info\top_level.txt
17409writing manifest file 'ChimeraX_BasicActions.egg-info\SOURCES.txt'
17410reading manifest file 'ChimeraX_BasicActions.egg-info\SOURCES.txt'
17411writing manifest file 'ChimeraX_BasicActions.egg-info\SOURCES.txt'
17412Copying ChimeraX_BasicActions.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_BasicActions-1.1.3-py3.11.egg-info
17413running install_scripts
17414creating build\bdist.win-amd64\wheel\chimerax_basicactions-1.1.3.dist-info\WHEEL
17415creating 'dist\chimerax_basicactions-1.1.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
17416adding 'chimerax/basic_actions/__init__.py'
17417adding 'chimerax/basic_actions/basic_actions.css'
17418adding 'chimerax/basic_actions/basic_actions.html'
17419adding 'chimerax/basic_actions/basic_actions.js'
17420adding 'chimerax/basic_actions/cmd.py'
17421adding 'chimerax/basic_actions/statemgr.py'
17422adding 'chimerax/basic_actions/tool.py'
17423adding 'chimerax/basic_actions/lib/atomhide.png'
17424adding 'chimerax/basic_actions/lib/atomshow.png'
17425adding 'chimerax/basic_actions/lib/colorpicker.svg'
17426adding 'chimerax/basic_actions/lib/downarrow.png'
17427adding 'chimerax/basic_actions/lib/hide.svg'
17428adding 'chimerax/basic_actions/lib/jquery-3.2.1.min.js'
17429adding 'chimerax/basic_actions/lib/jquery.tablesorter.combined.js'
17430adding 'chimerax/basic_actions/lib/ribhide.png'
17431adding 'chimerax/basic_actions/lib/ribshow.png'
17432adding 'chimerax/basic_actions/lib/show.svg'
17433adding 'chimerax/basic_actions/lib/surfhide.png'
17434adding 'chimerax/basic_actions/lib/surfshow.png'
17435adding 'chimerax/basic_actions/lib/uparrow.png'
17436adding 'chimerax_basicactions-1.1.3.dist-info/METADATA'
17437adding 'chimerax_basicactions-1.1.3.dist-info/WHEEL'
17438adding 'chimerax_basicactions-1.1.3.dist-info/top_level.txt'
17439adding 'chimerax_basicactions-1.1.3.dist-info/RECORD'
17440removing build\bdist.win-amd64\wheel
17441Distribution is in .\dist\ChimeraX_BasicActions-1.1.3-py3-none-any.whl
17442INFO:
17443
17444make sync
17445make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
17446cp -av dist/*.whl ../../../build/sync
17447'dist/chimerax_basicactions-1.1.3-py3-none-any.whl' -> '../../../build/sync/chimerax_basicactions-1.1.3-py3-none-any.whl'
17448make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
17449make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/basic_actions'
17450make -C bild build
17451make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
17452if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17453 echo "missing ChimeraX application's python"; exit 1; \
17454else \
17455 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17456fi
17457INFO:
17458Executing: devel build . exit true
17459C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
17460!!
17461
17462 ********************************************************************************
17463 Please consider removing the following classifiers in favor of a SPDX license expression:
17464
17465 License :: Free for non-commercial use
17466
17467 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17468 ********************************************************************************
17469
17470!!
17471 self._finalize_license_expression()
17472running build
17473running build_py
17474creating build\lib\chimerax\bild
17475copying src\bild.py -> build\lib\chimerax\bild
17476copying src\__init__.py -> build\lib\chimerax\bild
17477running bdist_wheel
17478installing to build\bdist.win-amd64\wheel
17479running install
17480running install_lib
17481creating build\bdist.win-amd64\wheel
17482creating build\bdist.win-amd64\wheel\chimerax
17483creating build\bdist.win-amd64\wheel\chimerax\bild
17484copying build\lib\chimerax\bild\bild.py -> build\bdist.win-amd64\wheel\.\chimerax\bild
17485copying build\lib\chimerax\bild\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\bild
17486running install_egg_info
17487running egg_info
17488creating ChimeraX_BILD.egg-info
17489writing ChimeraX_BILD.egg-info\PKG-INFO
17490writing dependency_links to ChimeraX_BILD.egg-info\dependency_links.txt
17491writing requirements to ChimeraX_BILD.egg-info\requires.txt
17492writing top-level names to ChimeraX_BILD.egg-info\top_level.txt
17493writing manifest file 'ChimeraX_BILD.egg-info\SOURCES.txt'
17494reading manifest file 'ChimeraX_BILD.egg-info\SOURCES.txt'
17495writing manifest file 'ChimeraX_BILD.egg-info\SOURCES.txt'
17496Copying ChimeraX_BILD.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_BILD-1.0-py3.11.egg-info
17497running install_scripts
17498creating build\bdist.win-amd64\wheel\chimerax_bild-1.0.dist-info\WHEEL
17499creating 'dist\chimerax_bild-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
17500adding 'chimerax/bild/__init__.py'
17501adding 'chimerax/bild/bild.py'
17502adding 'chimerax_bild-1.0.dist-info/METADATA'
17503adding 'chimerax_bild-1.0.dist-info/WHEEL'
17504adding 'chimerax_bild-1.0.dist-info/top_level.txt'
17505adding 'chimerax_bild-1.0.dist-info/RECORD'
17506removing build\bdist.win-amd64\wheel
17507Distribution is in .\dist\ChimeraX_BILD-1.0-py3-none-any.whl
17508INFO:
17509
17510make sync
17511make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
17512cp -av dist/*.whl ../../../build/sync
17513'dist/chimerax_bild-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_bild-1.0-py3-none-any.whl'
17514make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
17515make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bild'
17516make -C blastprotein build
17517make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
17518if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17519 echo "missing ChimeraX application's python"; exit 1; \
17520else \
17521 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17522fi
17523INFO:
17524Executing: devel build . exit true
17525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
17526!!
17527
17528 ********************************************************************************
17529 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
17530
17531 By 2026-Feb-18, you need to update your project and remove deprecated calls
17532 or your builds will no longer be supported.
17533
17534 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17535 ********************************************************************************
17536
17537!!
17538 corresp(dist, value, root_dir)
17539running build
17540running build_py
17541creating build\lib\chimerax\blastprotein
17542copying src\cmd.py -> build\lib\chimerax\blastprotein
17543copying src\job.py -> build\lib\chimerax\blastprotein
17544copying src\tests.py -> build\lib\chimerax\blastprotein
17545copying src\utils.py -> build\lib\chimerax\blastprotein
17546copying src\__init__.py -> build\lib\chimerax\blastprotein
17547creating build\lib\chimerax\blastprotein\data_model
17548copying src\data_model\databases.py -> build\lib\chimerax\blastprotein\data_model
17549copying src\data_model\dbparsers.py -> build\lib\chimerax\blastprotein\data_model
17550copying src\data_model\match.py -> build\lib\chimerax\blastprotein\data_model
17551copying src\data_model\pdbinfo.py -> build\lib\chimerax\blastprotein\data_model
17552copying src\data_model\__init__.py -> build\lib\chimerax\blastprotein\data_model
17553creating build\lib\chimerax\blastprotein\ui
17554copying src\ui\results.py -> build\lib\chimerax\blastprotein\ui
17555copying src\ui\tests.py -> build\lib\chimerax\blastprotein\ui
17556copying src\ui\tool.py -> build\lib\chimerax\blastprotein\ui
17557copying src\ui\__init__.py -> build\lib\chimerax\blastprotein\ui
17558creating build\lib\chimerax\blastprotein\ui\widgets
17559copying src\ui\widgets\bpform.py -> build\lib\chimerax\blastprotein\ui\widgets
17560copying src\ui\widgets\labelledbar.py -> build\lib\chimerax\blastprotein\ui\widgets
17561copying src\ui\widgets\table.py -> build\lib\chimerax\blastprotein\ui\widgets
17562copying src\ui\widgets\__init__.py -> build\lib\chimerax\blastprotein\ui\widgets
17563running bdist_wheel
17564installing to build\bdist.win-amd64\wheel
17565running install
17566running install_lib
17567creating build\bdist.win-amd64\wheel
17568creating build\bdist.win-amd64\wheel\chimerax
17569creating build\bdist.win-amd64\wheel\chimerax\blastprotein
17570copying build\lib\chimerax\blastprotein\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein
17571creating build\bdist.win-amd64\wheel\chimerax\blastprotein\data_model
17572copying build\lib\chimerax\blastprotein\data_model\databases.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\data_model
17573copying build\lib\chimerax\blastprotein\data_model\dbparsers.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\data_model
17574copying build\lib\chimerax\blastprotein\data_model\match.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\data_model
17575copying build\lib\chimerax\blastprotein\data_model\pdbinfo.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\data_model
17576copying build\lib\chimerax\blastprotein\data_model\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\data_model
17577copying build\lib\chimerax\blastprotein\job.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein
17578copying build\lib\chimerax\blastprotein\tests.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein
17579creating build\bdist.win-amd64\wheel\chimerax\blastprotein\ui
17580copying build\lib\chimerax\blastprotein\ui\results.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui
17581copying build\lib\chimerax\blastprotein\ui\tests.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui
17582copying build\lib\chimerax\blastprotein\ui\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui
17583creating build\bdist.win-amd64\wheel\chimerax\blastprotein\ui\widgets
17584copying build\lib\chimerax\blastprotein\ui\widgets\bpform.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui\widgets
17585copying build\lib\chimerax\blastprotein\ui\widgets\labelledbar.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui\widgets
17586copying build\lib\chimerax\blastprotein\ui\widgets\table.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui\widgets
17587copying build\lib\chimerax\blastprotein\ui\widgets\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui\widgets
17588copying build\lib\chimerax\blastprotein\ui\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein\ui
17589copying build\lib\chimerax\blastprotein\utils.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein
17590copying build\lib\chimerax\blastprotein\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\blastprotein
17591running install_egg_info
17592running egg_info
17593creating ChimeraX_BlastProtein.egg-info
17594writing ChimeraX_BlastProtein.egg-info\PKG-INFO
17595writing dependency_links to ChimeraX_BlastProtein.egg-info\dependency_links.txt
17596writing requirements to ChimeraX_BlastProtein.egg-info\requires.txt
17597writing top-level names to ChimeraX_BlastProtein.egg-info\top_level.txt
17598writing manifest file 'ChimeraX_BlastProtein.egg-info\SOURCES.txt'
17599reading manifest file 'ChimeraX_BlastProtein.egg-info\SOURCES.txt'
17600writing manifest file 'ChimeraX_BlastProtein.egg-info\SOURCES.txt'
17601Copying ChimeraX_BlastProtein.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_BlastProtein-3.0.0-py3.11.egg-info
17602running install_scripts
17603creating build\bdist.win-amd64\wheel\chimerax_blastprotein-3.0.0.dist-info\WHEEL
17604creating 'dist\chimerax_blastprotein-3.0.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
17605adding 'chimerax/blastprotein/__init__.py'
17606adding 'chimerax/blastprotein/cmd.py'
17607adding 'chimerax/blastprotein/job.py'
17608adding 'chimerax/blastprotein/tests.py'
17609adding 'chimerax/blastprotein/utils.py'
17610adding 'chimerax/blastprotein/data_model/__init__.py'
17611adding 'chimerax/blastprotein/data_model/databases.py'
17612adding 'chimerax/blastprotein/data_model/dbparsers.py'
17613adding 'chimerax/blastprotein/data_model/match.py'
17614adding 'chimerax/blastprotein/data_model/pdbinfo.py'
17615adding 'chimerax/blastprotein/ui/__init__.py'
17616adding 'chimerax/blastprotein/ui/results.py'
17617adding 'chimerax/blastprotein/ui/tests.py'
17618adding 'chimerax/blastprotein/ui/tool.py'
17619adding 'chimerax/blastprotein/ui/widgets/__init__.py'
17620adding 'chimerax/blastprotein/ui/widgets/bpform.py'
17621adding 'chimerax/blastprotein/ui/widgets/labelledbar.py'
17622adding 'chimerax/blastprotein/ui/widgets/table.py'
17623adding 'chimerax_blastprotein-3.0.0.dist-info/METADATA'
17624adding 'chimerax_blastprotein-3.0.0.dist-info/WHEEL'
17625adding 'chimerax_blastprotein-3.0.0.dist-info/top_level.txt'
17626adding 'chimerax_blastprotein-3.0.0.dist-info/RECORD'
17627removing build\bdist.win-amd64\wheel
17628Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\blastprotein\dist\chimerax_blastprotein-3.0.0-py3-none-any.whl
17629INFO:
17630
17631make sync
17632make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
17633cp -av dist/*.whl ../../../build/sync
17634'dist/chimerax_blastprotein-3.0.0-py3-none-any.whl' -> '../../../build/sync/chimerax_blastprotein-3.0.0-py3-none-any.whl'
17635make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
17636make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/blastprotein'
17637make -C boltz build
17638make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
17639if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17640 echo "missing ChimeraX application's python"; exit 1; \
17641else \
17642 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17643fi
17644INFO:
17645Executing: devel build . exit true
17646C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
17647!!
17648
17649 ********************************************************************************
17650 Please consider removing the following classifiers in favor of a SPDX license expression:
17651
17652 License :: Free for non-commercial use
17653
17654 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17655 ********************************************************************************
17656
17657!!
17658 self._finalize_license_expression()
17659running build
17660running build_py
17661creating build\lib\chimerax\boltz
17662copying src\boltz_gui.py -> build\lib\chimerax\boltz
17663copying src\download_weights_and_ccd.py -> build\lib\chimerax\boltz
17664copying src\install.py -> build\lib\chimerax\boltz
17665copying src\predict.py -> build\lib\chimerax\boltz
17666copying src\settings.py -> build\lib\chimerax\boltz
17667copying src\__init__.py -> build\lib\chimerax\boltz
17668creating build\lib\chimerax\boltz\docs
17669copying src\docs\boltz_help.html -> build\lib\chimerax\boltz\docs
17670creating build\lib\chimerax\boltz\docs\images
17671copying src\docs\images\boltz_assembly.png -> build\lib\chimerax\boltz\docs\images
17672copying src\docs\images\boltz_gui.png -> build\lib\chimerax\boltz\docs\images
17673copying src\docs\images\boltz_menu.png -> build\lib\chimerax\boltz\docs\images
17674copying src\docs\images\boltz_options.png -> build\lib\chimerax\boltz\docs\images
17675copying src\docs\images\hemoglobin.png -> build\lib\chimerax\boltz\docs\images
17676copying src\docs\images\hemoglobin_pae.png -> build\lib\chimerax\boltz\docs\images
17677running bdist_wheel
17678installing to build\bdist.win-amd64\wheel
17679running install
17680running install_lib
17681creating build\bdist.win-amd64\wheel
17682creating build\bdist.win-amd64\wheel\chimerax
17683creating build\bdist.win-amd64\wheel\chimerax\boltz
17684copying build\lib\chimerax\boltz\boltz_gui.py -> build\bdist.win-amd64\wheel\.\chimerax\boltz
17685creating build\bdist.win-amd64\wheel\chimerax\boltz\docs
17686copying build\lib\chimerax\boltz\docs\boltz_help.html -> build\bdist.win-amd64\wheel\.\chimerax\boltz\docs
17687creating build\bdist.win-amd64\wheel\chimerax\boltz\docs\images
17688copying build\lib\chimerax\boltz\docs\images\boltz_assembly.png -> build\bdist.win-amd64\wheel\.\chimerax\boltz\docs\images
17689copying build\lib\chimerax\boltz\docs\images\boltz_gui.png -> build\bdist.win-amd64\wheel\.\chimerax\boltz\docs\images
17690copying build\lib\chimerax\boltz\docs\images\boltz_menu.png -> build\bdist.win-amd64\wheel\.\chimerax\boltz\docs\images
17691copying build\lib\chimerax\boltz\docs\images\boltz_options.png -> build\bdist.win-amd64\wheel\.\chimerax\boltz\docs\images
17692copying build\lib\chimerax\boltz\docs\images\hemoglobin.png -> build\bdist.win-amd64\wheel\.\chimerax\boltz\docs\images
17693copying build\lib\chimerax\boltz\docs\images\hemoglobin_pae.png -> build\bdist.win-amd64\wheel\.\chimerax\boltz\docs\images
17694copying build\lib\chimerax\boltz\download_weights_and_ccd.py -> build\bdist.win-amd64\wheel\.\chimerax\boltz
17695copying build\lib\chimerax\boltz\install.py -> build\bdist.win-amd64\wheel\.\chimerax\boltz
17696copying build\lib\chimerax\boltz\predict.py -> build\bdist.win-amd64\wheel\.\chimerax\boltz
17697copying build\lib\chimerax\boltz\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\boltz
17698copying build\lib\chimerax\boltz\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\boltz
17699running install_egg_info
17700running egg_info
17701creating ChimeraX_Boltz.egg-info
17702writing ChimeraX_Boltz.egg-info\PKG-INFO
17703writing dependency_links to ChimeraX_Boltz.egg-info\dependency_links.txt
17704writing requirements to ChimeraX_Boltz.egg-info\requires.txt
17705writing top-level names to ChimeraX_Boltz.egg-info\top_level.txt
17706writing manifest file 'ChimeraX_Boltz.egg-info\SOURCES.txt'
17707reading manifest file 'ChimeraX_Boltz.egg-info\SOURCES.txt'
17708writing manifest file 'ChimeraX_Boltz.egg-info\SOURCES.txt'
17709Copying ChimeraX_Boltz.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Boltz-1.1-py3.11.egg-info
17710running install_scripts
17711creating build\bdist.win-amd64\wheel\chimerax_boltz-1.1.dist-info\WHEEL
17712creating 'dist\chimerax_boltz-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
17713adding 'chimerax/boltz/__init__.py'
17714adding 'chimerax/boltz/boltz_gui.py'
17715adding 'chimerax/boltz/download_weights_and_ccd.py'
17716adding 'chimerax/boltz/install.py'
17717adding 'chimerax/boltz/predict.py'
17718adding 'chimerax/boltz/settings.py'
17719adding 'chimerax/boltz/docs/boltz_help.html'
17720adding 'chimerax/boltz/docs/images/boltz_assembly.png'
17721adding 'chimerax/boltz/docs/images/boltz_gui.png'
17722adding 'chimerax/boltz/docs/images/boltz_menu.png'
17723adding 'chimerax/boltz/docs/images/boltz_options.png'
17724adding 'chimerax/boltz/docs/images/hemoglobin.png'
17725adding 'chimerax/boltz/docs/images/hemoglobin_pae.png'
17726adding 'chimerax_boltz-1.1.dist-info/METADATA'
17727adding 'chimerax_boltz-1.1.dist-info/WHEEL'
17728adding 'chimerax_boltz-1.1.dist-info/top_level.txt'
17729adding 'chimerax_boltz-1.1.dist-info/RECORD'
17730removing build\bdist.win-amd64\wheel
17731Distribution is in .\dist\ChimeraX_Boltz-1.1-py3-none-any.whl
17732INFO:
17733
17734make sync
17735make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
17736cp -av dist/*.whl ../../../build/sync
17737'dist/chimerax_boltz-1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_boltz-1.1-py3-none-any.whl'
17738make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
17739make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/boltz'
17740make -C bond_rot build
17741make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
17742if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17743 echo "missing ChimeraX application's python"; exit 1; \
17744else \
17745 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17746fi
17747INFO:
17748Executing: devel build . exit true
17749C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
17750!!
17751
17752 ********************************************************************************
17753 Please consider removing the following classifiers in favor of a SPDX license expression:
17754
17755 License :: Free for non-commercial use
17756
17757 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17758 ********************************************************************************
17759
17760!!
17761 self._finalize_license_expression()
17762running build
17763running build_py
17764creating build\lib\chimerax\bond_rot
17765copying src\bond_rot.py -> build\lib\chimerax\bond_rot
17766copying src\cmd.py -> build\lib\chimerax\bond_rot
17767copying src\manager.py -> build\lib\chimerax\bond_rot
17768copying src\mouse_rot.py -> build\lib\chimerax\bond_rot
17769copying src\__init__.py -> build\lib\chimerax\bond_rot
17770copying src\bondrot.png -> build\lib\chimerax\bond_rot
17771running bdist_wheel
17772installing to build\bdist.win-amd64\wheel
17773running install
17774running install_lib
17775creating build\bdist.win-amd64\wheel
17776creating build\bdist.win-amd64\wheel\chimerax
17777creating build\bdist.win-amd64\wheel\chimerax\bond_rot
17778copying build\lib\chimerax\bond_rot\bondrot.png -> build\bdist.win-amd64\wheel\.\chimerax\bond_rot
17779copying build\lib\chimerax\bond_rot\bond_rot.py -> build\bdist.win-amd64\wheel\.\chimerax\bond_rot
17780copying build\lib\chimerax\bond_rot\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\bond_rot
17781copying build\lib\chimerax\bond_rot\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\bond_rot
17782copying build\lib\chimerax\bond_rot\mouse_rot.py -> build\bdist.win-amd64\wheel\.\chimerax\bond_rot
17783copying build\lib\chimerax\bond_rot\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\bond_rot
17784running install_egg_info
17785running egg_info
17786creating ChimeraX_BondRot.egg-info
17787writing ChimeraX_BondRot.egg-info\PKG-INFO
17788writing dependency_links to ChimeraX_BondRot.egg-info\dependency_links.txt
17789writing requirements to ChimeraX_BondRot.egg-info\requires.txt
17790writing top-level names to ChimeraX_BondRot.egg-info\top_level.txt
17791writing manifest file 'ChimeraX_BondRot.egg-info\SOURCES.txt'
17792reading manifest file 'ChimeraX_BondRot.egg-info\SOURCES.txt'
17793writing manifest file 'ChimeraX_BondRot.egg-info\SOURCES.txt'
17794Copying ChimeraX_BondRot.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_BondRot-2.0.4-py3.11.egg-info
17795running install_scripts
17796creating build\bdist.win-amd64\wheel\chimerax_bondrot-2.0.4.dist-info\WHEEL
17797creating 'dist\chimerax_bondrot-2.0.4-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
17798adding 'chimerax/bond_rot/__init__.py'
17799adding 'chimerax/bond_rot/bond_rot.py'
17800adding 'chimerax/bond_rot/bondrot.png'
17801adding 'chimerax/bond_rot/cmd.py'
17802adding 'chimerax/bond_rot/manager.py'
17803adding 'chimerax/bond_rot/mouse_rot.py'
17804adding 'chimerax_bondrot-2.0.4.dist-info/METADATA'
17805adding 'chimerax_bondrot-2.0.4.dist-info/WHEEL'
17806adding 'chimerax_bondrot-2.0.4.dist-info/top_level.txt'
17807adding 'chimerax_bondrot-2.0.4.dist-info/RECORD'
17808removing build\bdist.win-amd64\wheel
17809Distribution is in .\dist\ChimeraX_BondRot-2.0.4-py3-none-any.whl
17810INFO:
17811
17812make sync
17813make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
17814cp -av dist/*.whl ../../../build/sync
17815'dist/chimerax_bondrot-2.0.4-py3-none-any.whl' -> '../../../build/sync/chimerax_bondrot-2.0.4-py3-none-any.whl'
17816make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
17817make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bond_rot'
17818make -C bug_reporter build
17819make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
17820if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17821 echo "missing ChimeraX application's python"; exit 1; \
17822else \
17823 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17824fi
17825INFO:
17826Executing: devel build . exit true
17827C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
17828!!
17829
17830 ********************************************************************************
17831 Please consider removing the following classifiers in favor of a SPDX license expression:
17832
17833 License :: Free for non-commercial use
17834
17835 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17836 ********************************************************************************
17837
17838!!
17839 self._finalize_license_expression()
17840running build
17841running build_py
17842creating build\lib\chimerax\bug_reporter
17843copying src\crash_report.py -> build\lib\chimerax\bug_reporter
17844copying src\form_fields.py -> build\lib\chimerax\bug_reporter
17845copying src\mac_crash_report.py -> build\lib\chimerax\bug_reporter
17846copying src\settings.py -> build\lib\chimerax\bug_reporter
17847copying src\tool.py -> build\lib\chimerax\bug_reporter
17848copying src\__init__.py -> build\lib\chimerax\bug_reporter
17849running bdist_wheel
17850installing to build\bdist.win-amd64\wheel
17851running install
17852running install_lib
17853creating build\bdist.win-amd64\wheel
17854creating build\bdist.win-amd64\wheel\chimerax
17855creating build\bdist.win-amd64\wheel\chimerax\bug_reporter
17856copying build\lib\chimerax\bug_reporter\crash_report.py -> build\bdist.win-amd64\wheel\.\chimerax\bug_reporter
17857copying build\lib\chimerax\bug_reporter\form_fields.py -> build\bdist.win-amd64\wheel\.\chimerax\bug_reporter
17858copying build\lib\chimerax\bug_reporter\mac_crash_report.py -> build\bdist.win-amd64\wheel\.\chimerax\bug_reporter
17859copying build\lib\chimerax\bug_reporter\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\bug_reporter
17860copying build\lib\chimerax\bug_reporter\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\bug_reporter
17861copying build\lib\chimerax\bug_reporter\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\bug_reporter
17862running install_egg_info
17863running egg_info
17864creating ChimeraX_BugReporter.egg-info
17865writing ChimeraX_BugReporter.egg-info\PKG-INFO
17866writing dependency_links to ChimeraX_BugReporter.egg-info\dependency_links.txt
17867writing requirements to ChimeraX_BugReporter.egg-info\requires.txt
17868writing top-level names to ChimeraX_BugReporter.egg-info\top_level.txt
17869writing manifest file 'ChimeraX_BugReporter.egg-info\SOURCES.txt'
17870reading manifest file 'ChimeraX_BugReporter.egg-info\SOURCES.txt'
17871writing manifest file 'ChimeraX_BugReporter.egg-info\SOURCES.txt'
17872Copying ChimeraX_BugReporter.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_BugReporter-1.0.2-py3.11.egg-info
17873running install_scripts
17874creating build\bdist.win-amd64\wheel\chimerax_bugreporter-1.0.2.dist-info\WHEEL
17875creating 'dist\chimerax_bugreporter-1.0.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
17876adding 'chimerax/bug_reporter/__init__.py'
17877adding 'chimerax/bug_reporter/crash_report.py'
17878adding 'chimerax/bug_reporter/form_fields.py'
17879adding 'chimerax/bug_reporter/mac_crash_report.py'
17880adding 'chimerax/bug_reporter/settings.py'
17881adding 'chimerax/bug_reporter/tool.py'
17882adding 'chimerax_bugreporter-1.0.2.dist-info/METADATA'
17883adding 'chimerax_bugreporter-1.0.2.dist-info/WHEEL'
17884adding 'chimerax_bugreporter-1.0.2.dist-info/top_level.txt'
17885adding 'chimerax_bugreporter-1.0.2.dist-info/RECORD'
17886removing build\bdist.win-amd64\wheel
17887Distribution is in .\dist\ChimeraX_BugReporter-1.0.2-py3-none-any.whl
17888INFO:
17889
17890make sync
17891make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
17892cp -av dist/*.whl ../../../build/sync
17893'dist/chimerax_bugreporter-1.0.2-py3-none-any.whl' -> '../../../build/sync/chimerax_bugreporter-1.0.2-py3-none-any.whl'
17894make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
17895make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bug_reporter'
17896make -C build_structure build
17897make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
17898if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
17899 echo "missing ChimeraX application's python"; exit 1; \
17900else \
17901 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
17902fi
17903INFO:
17904Executing: devel build . exit true
17905C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
17906!!
17907
17908 ********************************************************************************
17909 Please consider removing the following classifiers in favor of a SPDX license expression:
17910
17911 License :: Free for non-commercial use
17912
17913 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
17914 ********************************************************************************
17915
17916!!
17917 self._finalize_license_expression()
17918running build
17919running build_py
17920creating build\lib\chimerax\build_structure
17921copying src\bond.py -> build\lib\chimerax\build_structure
17922copying src\cmd.py -> build\lib\chimerax\build_structure
17923copying src\contextmenu.py -> build\lib\chimerax\build_structure
17924copying src\fragment.py -> build\lib\chimerax\build_structure
17925copying src\fragment_manager.py -> build\lib\chimerax\build_structure
17926copying src\manager.py -> build\lib\chimerax\build_structure
17927copying src\mod.py -> build\lib\chimerax\build_structure
17928copying src\process.py -> build\lib\chimerax\build_structure
17929copying src\providers.py -> build\lib\chimerax\build_structure
17930copying src\provider_api.py -> build\lib\chimerax\build_structure
17931copying src\start.py -> build\lib\chimerax\build_structure
17932copying src\tool.py -> build\lib\chimerax\build_structure
17933copying src\__init__.py -> build\lib\chimerax\build_structure
17934creating build\lib\chimerax\build_structure\fragments
17935copying src\fragments\acridine.py -> build\lib\chimerax\build_structure\fragments
17936copying src\fragments\anthracene.py -> build\lib\chimerax\build_structure\fragments
17937copying src\fragments\benzcisoxazole.py -> build\lib\chimerax\build_structure\fragments
17938copying src\fragments\benzdisoxazole.py -> build\lib\chimerax\build_structure\fragments
17939copying src\fragments\benzene.py -> build\lib\chimerax\build_structure\fragments
17940copying src\fragments\benzimidazole.py -> build\lib\chimerax\build_structure\fragments
17941copying src\fragments\benzocthiophene.py -> build\lib\chimerax\build_structure\fragments
17942copying src\fragments\benzofuran.py -> build\lib\chimerax\build_structure\fragments
17943copying src\fragments\benzothiazole.py -> build\lib\chimerax\build_structure\fragments
17944copying src\fragments\benzothiophene.py -> build\lib\chimerax\build_structure\fragments
17945copying src\fragments\benzoxazole.py -> build\lib\chimerax\build_structure\fragments
17946copying src\fragments\cinnoline.py -> build\lib\chimerax\build_structure\fragments
17947copying src\fragments\furan.py -> build\lib\chimerax\build_structure\fragments
17948copying src\fragments\imidazole.py -> build\lib\chimerax\build_structure\fragments
17949copying src\fragments\indazole.py -> build\lib\chimerax\build_structure\fragments
17950copying src\fragments\indole.py -> build\lib\chimerax\build_structure\fragments
17951copying src\fragments\isobenzofuran.py -> build\lib\chimerax\build_structure\fragments
17952copying src\fragments\isoindole.py -> build\lib\chimerax\build_structure\fragments
17953copying src\fragments\isoquinoline.py -> build\lib\chimerax\build_structure\fragments
17954copying src\fragments\isoxazole.py -> build\lib\chimerax\build_structure\fragments
17955copying src\fragments\naphthalene.py -> build\lib\chimerax\build_structure\fragments
17956copying src\fragments\oxazole.py -> build\lib\chimerax\build_structure\fragments
17957copying src\fragments\purine.py -> build\lib\chimerax\build_structure\fragments
17958copying src\fragments\pyrazine.py -> build\lib\chimerax\build_structure\fragments
17959copying src\fragments\pyrazole.py -> build\lib\chimerax\build_structure\fragments
17960copying src\fragments\pyridazine.py -> build\lib\chimerax\build_structure\fragments
17961copying src\fragments\pyridine.py -> build\lib\chimerax\build_structure\fragments
17962copying src\fragments\pyrimidine.py -> build\lib\chimerax\build_structure\fragments
17963copying src\fragments\pyrrole.py -> build\lib\chimerax\build_structure\fragments
17964copying src\fragments\quinazoline.py -> build\lib\chimerax\build_structure\fragments
17965copying src\fragments\quinoline.py -> build\lib\chimerax\build_structure\fragments
17966copying src\fragments\quinoxaline.py -> build\lib\chimerax\build_structure\fragments
17967copying src\fragments\thiazole.py -> build\lib\chimerax\build_structure\fragments
17968copying src\fragments\thiophene.py -> build\lib\chimerax\build_structure\fragments
17969creating build\lib\chimerax\build_structure\nuc-data
17970copying src\nuc-data\A-AT.coords -> build\lib\chimerax\build_structure\nuc-data
17971copying src\nuc-data\A-CG.coords -> build\lib\chimerax\build_structure\nuc-data
17972copying src\nuc-data\A-GC.coords -> build\lib\chimerax\build_structure\nuc-data
17973copying src\nuc-data\A-TA.coords -> build\lib\chimerax\build_structure\nuc-data
17974copying src\nuc-data\A.xform -> build\lib\chimerax\build_structure\nuc-data
17975copying src\nuc-data\B-AT.coords -> build\lib\chimerax\build_structure\nuc-data
17976copying src\nuc-data\B-CG.coords -> build\lib\chimerax\build_structure\nuc-data
17977copying src\nuc-data\B-GC.coords -> build\lib\chimerax\build_structure\nuc-data
17978copying src\nuc-data\B-TA.coords -> build\lib\chimerax\build_structure\nuc-data
17979copying src\nuc-data\B.xform -> build\lib\chimerax\build_structure\nuc-data
17980copying src\nuc-data\bonds -> build\lib\chimerax\build_structure\nuc-data
17981copying src\nuc-data\PROTOCOL -> build\lib\chimerax\build_structure\nuc-data
17982running bdist_wheel
17983installing to build\bdist.win-amd64\wheel
17984running install
17985running install_lib
17986creating build\bdist.win-amd64\wheel
17987creating build\bdist.win-amd64\wheel\chimerax
17988creating build\bdist.win-amd64\wheel\chimerax\build_structure
17989copying build\lib\chimerax\build_structure\bond.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
17990copying build\lib\chimerax\build_structure\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
17991copying build\lib\chimerax\build_structure\contextmenu.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
17992copying build\lib\chimerax\build_structure\fragment.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
17993creating build\bdist.win-amd64\wheel\chimerax\build_structure\fragments
17994copying build\lib\chimerax\build_structure\fragments\acridine.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
17995copying build\lib\chimerax\build_structure\fragments\anthracene.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
17996copying build\lib\chimerax\build_structure\fragments\benzcisoxazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
17997copying build\lib\chimerax\build_structure\fragments\benzdisoxazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
17998copying build\lib\chimerax\build_structure\fragments\benzene.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
17999copying build\lib\chimerax\build_structure\fragments\benzimidazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18000copying build\lib\chimerax\build_structure\fragments\benzocthiophene.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18001copying build\lib\chimerax\build_structure\fragments\benzofuran.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18002copying build\lib\chimerax\build_structure\fragments\benzothiazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18003copying build\lib\chimerax\build_structure\fragments\benzothiophene.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18004copying build\lib\chimerax\build_structure\fragments\benzoxazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18005copying build\lib\chimerax\build_structure\fragments\cinnoline.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18006copying build\lib\chimerax\build_structure\fragments\furan.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18007copying build\lib\chimerax\build_structure\fragments\imidazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18008copying build\lib\chimerax\build_structure\fragments\indazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18009copying build\lib\chimerax\build_structure\fragments\indole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18010copying build\lib\chimerax\build_structure\fragments\isobenzofuran.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18011copying build\lib\chimerax\build_structure\fragments\isoindole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18012copying build\lib\chimerax\build_structure\fragments\isoquinoline.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18013copying build\lib\chimerax\build_structure\fragments\isoxazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18014copying build\lib\chimerax\build_structure\fragments\naphthalene.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18015copying build\lib\chimerax\build_structure\fragments\oxazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18016copying build\lib\chimerax\build_structure\fragments\purine.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18017copying build\lib\chimerax\build_structure\fragments\pyrazine.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18018copying build\lib\chimerax\build_structure\fragments\pyrazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18019copying build\lib\chimerax\build_structure\fragments\pyridazine.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18020copying build\lib\chimerax\build_structure\fragments\pyridine.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18021copying build\lib\chimerax\build_structure\fragments\pyrimidine.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18022copying build\lib\chimerax\build_structure\fragments\pyrrole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18023copying build\lib\chimerax\build_structure\fragments\quinazoline.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18024copying build\lib\chimerax\build_structure\fragments\quinoline.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18025copying build\lib\chimerax\build_structure\fragments\quinoxaline.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18026copying build\lib\chimerax\build_structure\fragments\thiazole.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18027copying build\lib\chimerax\build_structure\fragments\thiophene.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\fragments
18028copying build\lib\chimerax\build_structure\fragment_manager.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18029copying build\lib\chimerax\build_structure\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18030copying build\lib\chimerax\build_structure\mod.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18031creating build\bdist.win-amd64\wheel\chimerax\build_structure\nuc-data
18032copying build\lib\chimerax\build_structure\nuc-data\A-AT.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18033copying build\lib\chimerax\build_structure\nuc-data\A-CG.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18034copying build\lib\chimerax\build_structure\nuc-data\A-GC.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18035copying build\lib\chimerax\build_structure\nuc-data\A-TA.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18036copying build\lib\chimerax\build_structure\nuc-data\A.xform -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18037copying build\lib\chimerax\build_structure\nuc-data\B-AT.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18038copying build\lib\chimerax\build_structure\nuc-data\B-CG.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18039copying build\lib\chimerax\build_structure\nuc-data\B-GC.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18040copying build\lib\chimerax\build_structure\nuc-data\B-TA.coords -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18041copying build\lib\chimerax\build_structure\nuc-data\B.xform -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18042copying build\lib\chimerax\build_structure\nuc-data\bonds -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18043copying build\lib\chimerax\build_structure\nuc-data\PROTOCOL -> build\bdist.win-amd64\wheel\.\chimerax\build_structure\nuc-data
18044copying build\lib\chimerax\build_structure\process.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18045copying build\lib\chimerax\build_structure\providers.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18046copying build\lib\chimerax\build_structure\provider_api.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18047copying build\lib\chimerax\build_structure\start.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18048copying build\lib\chimerax\build_structure\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18049copying build\lib\chimerax\build_structure\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\build_structure
18050running install_egg_info
18051running egg_info
18052creating ChimeraX_BuildStructure.egg-info
18053writing ChimeraX_BuildStructure.egg-info\PKG-INFO
18054writing dependency_links to ChimeraX_BuildStructure.egg-info\dependency_links.txt
18055writing requirements to ChimeraX_BuildStructure.egg-info\requires.txt
18056writing top-level names to ChimeraX_BuildStructure.egg-info\top_level.txt
18057writing manifest file 'ChimeraX_BuildStructure.egg-info\SOURCES.txt'
18058reading manifest file 'ChimeraX_BuildStructure.egg-info\SOURCES.txt'
18059writing manifest file 'ChimeraX_BuildStructure.egg-info\SOURCES.txt'
18060Copying ChimeraX_BuildStructure.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_BuildStructure-2.13.1-py3.11.egg-info
18061running install_scripts
18062creating build\bdist.win-amd64\wheel\chimerax_buildstructure-2.13.1.dist-info\WHEEL
18063creating 'dist\chimerax_buildstructure-2.13.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18064adding 'chimerax/build_structure/__init__.py'
18065adding 'chimerax/build_structure/bond.py'
18066adding 'chimerax/build_structure/cmd.py'
18067adding 'chimerax/build_structure/contextmenu.py'
18068adding 'chimerax/build_structure/fragment.py'
18069adding 'chimerax/build_structure/fragment_manager.py'
18070adding 'chimerax/build_structure/manager.py'
18071adding 'chimerax/build_structure/mod.py'
18072adding 'chimerax/build_structure/process.py'
18073adding 'chimerax/build_structure/provider_api.py'
18074adding 'chimerax/build_structure/providers.py'
18075adding 'chimerax/build_structure/start.py'
18076adding 'chimerax/build_structure/tool.py'
18077adding 'chimerax/build_structure/fragments/acridine.py'
18078adding 'chimerax/build_structure/fragments/anthracene.py'
18079adding 'chimerax/build_structure/fragments/benzcisoxazole.py'
18080adding 'chimerax/build_structure/fragments/benzdisoxazole.py'
18081adding 'chimerax/build_structure/fragments/benzene.py'
18082adding 'chimerax/build_structure/fragments/benzimidazole.py'
18083adding 'chimerax/build_structure/fragments/benzocthiophene.py'
18084adding 'chimerax/build_structure/fragments/benzofuran.py'
18085adding 'chimerax/build_structure/fragments/benzothiazole.py'
18086adding 'chimerax/build_structure/fragments/benzothiophene.py'
18087adding 'chimerax/build_structure/fragments/benzoxazole.py'
18088adding 'chimerax/build_structure/fragments/cinnoline.py'
18089adding 'chimerax/build_structure/fragments/furan.py'
18090adding 'chimerax/build_structure/fragments/imidazole.py'
18091adding 'chimerax/build_structure/fragments/indazole.py'
18092adding 'chimerax/build_structure/fragments/indole.py'
18093adding 'chimerax/build_structure/fragments/isobenzofuran.py'
18094adding 'chimerax/build_structure/fragments/isoindole.py'
18095adding 'chimerax/build_structure/fragments/isoquinoline.py'
18096adding 'chimerax/build_structure/fragments/isoxazole.py'
18097adding 'chimerax/build_structure/fragments/naphthalene.py'
18098adding 'chimerax/build_structure/fragments/oxazole.py'
18099adding 'chimerax/build_structure/fragments/purine.py'
18100adding 'chimerax/build_structure/fragments/pyrazine.py'
18101adding 'chimerax/build_structure/fragments/pyrazole.py'
18102adding 'chimerax/build_structure/fragments/pyridazine.py'
18103adding 'chimerax/build_structure/fragments/pyridine.py'
18104adding 'chimerax/build_structure/fragments/pyrimidine.py'
18105adding 'chimerax/build_structure/fragments/pyrrole.py'
18106adding 'chimerax/build_structure/fragments/quinazoline.py'
18107adding 'chimerax/build_structure/fragments/quinoline.py'
18108adding 'chimerax/build_structure/fragments/quinoxaline.py'
18109adding 'chimerax/build_structure/fragments/thiazole.py'
18110adding 'chimerax/build_structure/fragments/thiophene.py'
18111adding 'chimerax/build_structure/nuc-data/A-AT.coords'
18112adding 'chimerax/build_structure/nuc-data/A-CG.coords'
18113adding 'chimerax/build_structure/nuc-data/A-GC.coords'
18114adding 'chimerax/build_structure/nuc-data/A-TA.coords'
18115adding 'chimerax/build_structure/nuc-data/A.xform'
18116adding 'chimerax/build_structure/nuc-data/B-AT.coords'
18117adding 'chimerax/build_structure/nuc-data/B-CG.coords'
18118adding 'chimerax/build_structure/nuc-data/B-GC.coords'
18119adding 'chimerax/build_structure/nuc-data/B-TA.coords'
18120adding 'chimerax/build_structure/nuc-data/B.xform'
18121adding 'chimerax/build_structure/nuc-data/PROTOCOL'
18122adding 'chimerax/build_structure/nuc-data/bonds'
18123adding 'chimerax_buildstructure-2.13.1.dist-info/METADATA'
18124adding 'chimerax_buildstructure-2.13.1.dist-info/WHEEL'
18125adding 'chimerax_buildstructure-2.13.1.dist-info/top_level.txt'
18126adding 'chimerax_buildstructure-2.13.1.dist-info/RECORD'
18127removing build\bdist.win-amd64\wheel
18128Distribution is in .\dist\ChimeraX_BuildStructure-2.13.1-py3-none-any.whl
18129INFO:
18130
18131make sync
18132make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
18133cp -av dist/*.whl ../../../build/sync
18134'dist/chimerax_buildstructure-2.13.1-py3-none-any.whl' -> '../../../build/sync/chimerax_buildstructure-2.13.1-py3-none-any.whl'
18135make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
18136make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/build_structure'
18137make -C bumps build
18138make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
18139if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18140 echo "missing ChimeraX application's python"; exit 1; \
18141else \
18142 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18143fi
18144INFO:
18145Executing: devel build . exit true
18146C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18147!!
18148
18149 ********************************************************************************
18150 Please consider removing the following classifiers in favor of a SPDX license expression:
18151
18152 License :: Free for non-commercial use
18153
18154 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18155 ********************************************************************************
18156
18157!!
18158 self._finalize_license_expression()
18159running build
18160running build_py
18161creating build\lib\chimerax\bumps
18162copying src\bumps.py -> build\lib\chimerax\bumps
18163copying src\cbumps.py -> build\lib\chimerax\bumps
18164copying src\__init__.py -> build\lib\chimerax\bumps
18165running bdist_wheel
18166installing to build\bdist.win-amd64\wheel
18167running install
18168running install_lib
18169creating build\bdist.win-amd64\wheel
18170creating build\bdist.win-amd64\wheel\chimerax
18171creating build\bdist.win-amd64\wheel\chimerax\bumps
18172copying build\lib\chimerax\bumps\bumps.py -> build\bdist.win-amd64\wheel\.\chimerax\bumps
18173copying build\lib\chimerax\bumps\cbumps.py -> build\bdist.win-amd64\wheel\.\chimerax\bumps
18174copying build\lib\chimerax\bumps\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\bumps
18175running install_egg_info
18176running egg_info
18177creating ChimeraX_Bumps.egg-info
18178writing ChimeraX_Bumps.egg-info\PKG-INFO
18179writing dependency_links to ChimeraX_Bumps.egg-info\dependency_links.txt
18180writing requirements to ChimeraX_Bumps.egg-info\requires.txt
18181writing top-level names to ChimeraX_Bumps.egg-info\top_level.txt
18182writing manifest file 'ChimeraX_Bumps.egg-info\SOURCES.txt'
18183reading manifest file 'ChimeraX_Bumps.egg-info\SOURCES.txt'
18184writing manifest file 'ChimeraX_Bumps.egg-info\SOURCES.txt'
18185Copying ChimeraX_Bumps.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Bumps-1.0-py3.11.egg-info
18186running install_scripts
18187creating build\bdist.win-amd64\wheel\chimerax_bumps-1.0.dist-info\WHEEL
18188creating 'dist\chimerax_bumps-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18189adding 'chimerax/bumps/__init__.py'
18190adding 'chimerax/bumps/bumps.py'
18191adding 'chimerax/bumps/cbumps.py'
18192adding 'chimerax_bumps-1.0.dist-info/METADATA'
18193adding 'chimerax_bumps-1.0.dist-info/WHEEL'
18194adding 'chimerax_bumps-1.0.dist-info/top_level.txt'
18195adding 'chimerax_bumps-1.0.dist-info/RECORD'
18196removing build\bdist.win-amd64\wheel
18197Distribution is in .\dist\ChimeraX_Bumps-1.0-py3-none-any.whl
18198INFO:
18199
18200make sync
18201make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
18202cp -av dist/*.whl ../../../build/sync
18203'dist/chimerax_bumps-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_bumps-1.0-py3-none-any.whl'
18204make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
18205make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/bumps'
18206make -C buttons build
18207make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
18208if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18209 echo "missing ChimeraX application's python"; exit 1; \
18210else \
18211 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18212fi
18213INFO:
18214Executing: devel build . exit true
18215C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18216!!
18217
18218 ********************************************************************************
18219 Please consider removing the following classifiers in favor of a SPDX license expression:
18220
18221 License :: Free for non-commercial use
18222
18223 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18224 ********************************************************************************
18225
18226!!
18227 self._finalize_license_expression()
18228running build
18229running build_py
18230creating build\lib\chimerax\buttonpanel
18231copying src\buttons.py -> build\lib\chimerax\buttonpanel
18232copying src\__init__.py -> build\lib\chimerax\buttonpanel
18233running bdist_wheel
18234installing to build\bdist.win-amd64\wheel
18235running install
18236running install_lib
18237creating build\bdist.win-amd64\wheel
18238creating build\bdist.win-amd64\wheel\chimerax
18239creating build\bdist.win-amd64\wheel\chimerax\buttonpanel
18240copying build\lib\chimerax\buttonpanel\buttons.py -> build\bdist.win-amd64\wheel\.\chimerax\buttonpanel
18241copying build\lib\chimerax\buttonpanel\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\buttonpanel
18242running install_egg_info
18243running egg_info
18244creating ChimeraX_ButtonPanel.egg-info
18245writing ChimeraX_ButtonPanel.egg-info\PKG-INFO
18246writing dependency_links to ChimeraX_ButtonPanel.egg-info\dependency_links.txt
18247writing requirements to ChimeraX_ButtonPanel.egg-info\requires.txt
18248writing top-level names to ChimeraX_ButtonPanel.egg-info\top_level.txt
18249writing manifest file 'ChimeraX_ButtonPanel.egg-info\SOURCES.txt'
18250reading manifest file 'ChimeraX_ButtonPanel.egg-info\SOURCES.txt'
18251writing manifest file 'ChimeraX_ButtonPanel.egg-info\SOURCES.txt'
18252Copying ChimeraX_ButtonPanel.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ButtonPanel-1.0.1-py3.11.egg-info
18253running install_scripts
18254creating build\bdist.win-amd64\wheel\chimerax_buttonpanel-1.0.1.dist-info\WHEEL
18255creating 'dist\chimerax_buttonpanel-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18256adding 'chimerax/buttonpanel/__init__.py'
18257adding 'chimerax/buttonpanel/buttons.py'
18258adding 'chimerax_buttonpanel-1.0.1.dist-info/METADATA'
18259adding 'chimerax_buttonpanel-1.0.1.dist-info/WHEEL'
18260adding 'chimerax_buttonpanel-1.0.1.dist-info/top_level.txt'
18261adding 'chimerax_buttonpanel-1.0.1.dist-info/RECORD'
18262removing build\bdist.win-amd64\wheel
18263Distribution is in .\dist\ChimeraX_ButtonPanel-1.0.1-py3-none-any.whl
18264INFO:
18265
18266make sync
18267make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
18268cp -av dist/*.whl ../../../build/sync
18269'dist/chimerax_buttonpanel-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_buttonpanel-1.0.1-py3-none-any.whl'
18270make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
18271make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/buttons'
18272make -C cage_builder build
18273make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
18274if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18275 echo "missing ChimeraX application's python"; exit 1; \
18276else \
18277 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18278fi
18279INFO:
18280Executing: devel build . exit true
18281C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18282!!
18283
18284 ********************************************************************************
18285 Please consider removing the following classifiers in favor of a SPDX license expression:
18286
18287 License :: Free for non-commercial use
18288
18289 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18290 ********************************************************************************
18291
18292!!
18293 self._finalize_license_expression()
18294running build
18295running build_py
18296creating build\lib\chimerax\cage_builder
18297copying src\cage.py -> build\lib\chimerax\cage_builder
18298copying src\cmd.py -> build\lib\chimerax\cage_builder
18299copying src\tool.py -> build\lib\chimerax\cage_builder
18300copying src\__init__.py -> build\lib\chimerax\cage_builder
18301running bdist_wheel
18302installing to build\bdist.win-amd64\wheel
18303running install
18304running install_lib
18305creating build\bdist.win-amd64\wheel
18306creating build\bdist.win-amd64\wheel\chimerax
18307creating build\bdist.win-amd64\wheel\chimerax\cage_builder
18308copying build\lib\chimerax\cage_builder\cage.py -> build\bdist.win-amd64\wheel\.\chimerax\cage_builder
18309copying build\lib\chimerax\cage_builder\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\cage_builder
18310copying build\lib\chimerax\cage_builder\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\cage_builder
18311copying build\lib\chimerax\cage_builder\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\cage_builder
18312running install_egg_info
18313running egg_info
18314creating ChimeraX_CageBuilder.egg-info
18315writing ChimeraX_CageBuilder.egg-info\PKG-INFO
18316writing dependency_links to ChimeraX_CageBuilder.egg-info\dependency_links.txt
18317writing requirements to ChimeraX_CageBuilder.egg-info\requires.txt
18318writing top-level names to ChimeraX_CageBuilder.egg-info\top_level.txt
18319writing manifest file 'ChimeraX_CageBuilder.egg-info\SOURCES.txt'
18320reading manifest file 'ChimeraX_CageBuilder.egg-info\SOURCES.txt'
18321writing manifest file 'ChimeraX_CageBuilder.egg-info\SOURCES.txt'
18322Copying ChimeraX_CageBuilder.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_CageBuilder-1.0.1-py3.11.egg-info
18323running install_scripts
18324creating build\bdist.win-amd64\wheel\chimerax_cagebuilder-1.0.1.dist-info\WHEEL
18325creating 'dist\chimerax_cagebuilder-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18326adding 'chimerax/cage_builder/__init__.py'
18327adding 'chimerax/cage_builder/cage.py'
18328adding 'chimerax/cage_builder/cmd.py'
18329adding 'chimerax/cage_builder/tool.py'
18330adding 'chimerax_cagebuilder-1.0.1.dist-info/METADATA'
18331adding 'chimerax_cagebuilder-1.0.1.dist-info/WHEEL'
18332adding 'chimerax_cagebuilder-1.0.1.dist-info/top_level.txt'
18333adding 'chimerax_cagebuilder-1.0.1.dist-info/RECORD'
18334removing build\bdist.win-amd64\wheel
18335Distribution is in .\dist\ChimeraX_CageBuilder-1.0.1-py3-none-any.whl
18336INFO:
18337
18338make sync
18339make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
18340cp -av dist/*.whl ../../../build/sync
18341'dist/chimerax_cagebuilder-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_cagebuilder-1.0.1-py3-none-any.whl'
18342make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
18343make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cage_builder'
18344make -C cellpack build
18345make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
18346if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18347 echo "missing ChimeraX application's python"; exit 1; \
18348else \
18349 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18350fi
18351INFO:
18352Executing: devel build . exit true
18353C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18354!!
18355
18356 ********************************************************************************
18357 Please consider removing the following classifiers in favor of a SPDX license expression:
18358
18359 License :: Free for non-commercial use
18360
18361 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18362 ********************************************************************************
18363
18364!!
18365 self._finalize_license_expression()
18366running build
18367running build_py
18368creating build\lib\chimerax\cellpack
18369copying src\fetch_cellpack.py -> build\lib\chimerax\cellpack
18370copying src\read_apr.py -> build\lib\chimerax\cellpack
18371copying src\__init__.py -> build\lib\chimerax\cellpack
18372running bdist_wheel
18373installing to build\bdist.win-amd64\wheel
18374running install
18375running install_lib
18376creating build\bdist.win-amd64\wheel
18377creating build\bdist.win-amd64\wheel\chimerax
18378creating build\bdist.win-amd64\wheel\chimerax\cellpack
18379copying build\lib\chimerax\cellpack\fetch_cellpack.py -> build\bdist.win-amd64\wheel\.\chimerax\cellpack
18380copying build\lib\chimerax\cellpack\read_apr.py -> build\bdist.win-amd64\wheel\.\chimerax\cellpack
18381copying build\lib\chimerax\cellpack\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\cellpack
18382running install_egg_info
18383running egg_info
18384creating ChimeraX_CellPack.egg-info
18385writing ChimeraX_CellPack.egg-info\PKG-INFO
18386writing dependency_links to ChimeraX_CellPack.egg-info\dependency_links.txt
18387writing requirements to ChimeraX_CellPack.egg-info\requires.txt
18388writing top-level names to ChimeraX_CellPack.egg-info\top_level.txt
18389writing manifest file 'ChimeraX_CellPack.egg-info\SOURCES.txt'
18390reading manifest file 'ChimeraX_CellPack.egg-info\SOURCES.txt'
18391writing manifest file 'ChimeraX_CellPack.egg-info\SOURCES.txt'
18392Copying ChimeraX_CellPack.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_CellPack-1.0-py3.11.egg-info
18393running install_scripts
18394creating build\bdist.win-amd64\wheel\chimerax_cellpack-1.0.dist-info\WHEEL
18395creating 'dist\chimerax_cellpack-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18396adding 'chimerax/cellpack/__init__.py'
18397adding 'chimerax/cellpack/fetch_cellpack.py'
18398adding 'chimerax/cellpack/read_apr.py'
18399adding 'chimerax_cellpack-1.0.dist-info/METADATA'
18400adding 'chimerax_cellpack-1.0.dist-info/WHEEL'
18401adding 'chimerax_cellpack-1.0.dist-info/top_level.txt'
18402adding 'chimerax_cellpack-1.0.dist-info/RECORD'
18403removing build\bdist.win-amd64\wheel
18404Distribution is in .\dist\ChimeraX_CellPack-1.0-py3-none-any.whl
18405INFO:
18406
18407make sync
18408make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
18409cp -av dist/*.whl ../../../build/sync
18410'dist/chimerax_cellpack-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_cellpack-1.0-py3-none-any.whl'
18411make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
18412make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cellpack'
18413make -C centroids build
18414make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
18415if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18416 echo "missing ChimeraX application's python"; exit 1; \
18417else \
18418 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18419fi
18420INFO:
18421Executing: devel build . exit true
18422C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18423!!
18424
18425 ********************************************************************************
18426 Please consider removing the following classifiers in favor of a SPDX license expression:
18427
18428 License :: Free for non-commercial use
18429
18430 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18431 ********************************************************************************
18432
18433!!
18434 self._finalize_license_expression()
18435running build
18436running build_py
18437creating build\lib\chimerax\centroids
18438copying src\centroid.py -> build\lib\chimerax\centroids
18439copying src\cmd.py -> build\lib\chimerax\centroids
18440copying src\__init__.py -> build\lib\chimerax\centroids
18441running bdist_wheel
18442installing to build\bdist.win-amd64\wheel
18443running install
18444running install_lib
18445creating build\bdist.win-amd64\wheel
18446creating build\bdist.win-amd64\wheel\chimerax
18447creating build\bdist.win-amd64\wheel\chimerax\centroids
18448copying build\lib\chimerax\centroids\centroid.py -> build\bdist.win-amd64\wheel\.\chimerax\centroids
18449copying build\lib\chimerax\centroids\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\centroids
18450copying build\lib\chimerax\centroids\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\centroids
18451running install_egg_info
18452running egg_info
18453creating ChimeraX_Centroids.egg-info
18454writing ChimeraX_Centroids.egg-info\PKG-INFO
18455writing dependency_links to ChimeraX_Centroids.egg-info\dependency_links.txt
18456writing requirements to ChimeraX_Centroids.egg-info\requires.txt
18457writing top-level names to ChimeraX_Centroids.egg-info\top_level.txt
18458writing manifest file 'ChimeraX_Centroids.egg-info\SOURCES.txt'
18459reading manifest file 'ChimeraX_Centroids.egg-info\SOURCES.txt'
18460writing manifest file 'ChimeraX_Centroids.egg-info\SOURCES.txt'
18461Copying ChimeraX_Centroids.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Centroids-1.4-py3.11.egg-info
18462running install_scripts
18463creating build\bdist.win-amd64\wheel\chimerax_centroids-1.4.dist-info\WHEEL
18464creating 'dist\chimerax_centroids-1.4-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18465adding 'chimerax/centroids/__init__.py'
18466adding 'chimerax/centroids/centroid.py'
18467adding 'chimerax/centroids/cmd.py'
18468adding 'chimerax_centroids-1.4.dist-info/METADATA'
18469adding 'chimerax_centroids-1.4.dist-info/WHEEL'
18470adding 'chimerax_centroids-1.4.dist-info/top_level.txt'
18471adding 'chimerax_centroids-1.4.dist-info/RECORD'
18472removing build\bdist.win-amd64\wheel
18473Distribution is in .\dist\ChimeraX_Centroids-1.4-py3-none-any.whl
18474INFO:
18475
18476make sync
18477make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
18478cp -av dist/*.whl ../../../build/sync
18479'dist/chimerax_centroids-1.4-py3-none-any.whl' -> '../../../build/sync/chimerax_centroids-1.4-py3-none-any.whl'
18480make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
18481make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/centroids'
18482make -C change_chains build
18483make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
18484if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18485 echo "missing ChimeraX application's python"; exit 1; \
18486else \
18487 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18488fi
18489INFO:
18490Executing: devel build . exit true
18491C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18492!!
18493
18494 ********************************************************************************
18495 Please consider removing the following classifiers in favor of a SPDX license expression:
18496
18497 License :: Free for non-commercial use
18498
18499 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18500 ********************************************************************************
18501
18502!!
18503 self._finalize_license_expression()
18504running build
18505running build_py
18506creating build\lib\chimerax\change_chains
18507copying src\cmd.py -> build\lib\chimerax\change_chains
18508copying src\tool.py -> build\lib\chimerax\change_chains
18509copying src\__init__.py -> build\lib\chimerax\change_chains
18510running bdist_wheel
18511installing to build\bdist.win-amd64\wheel
18512running install
18513running install_lib
18514creating build\bdist.win-amd64\wheel
18515creating build\bdist.win-amd64\wheel\chimerax
18516creating build\bdist.win-amd64\wheel\chimerax\change_chains
18517copying build\lib\chimerax\change_chains\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\change_chains
18518copying build\lib\chimerax\change_chains\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\change_chains
18519copying build\lib\chimerax\change_chains\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\change_chains
18520running install_egg_info
18521running egg_info
18522creating ChimeraX_ChangeChains.egg-info
18523writing ChimeraX_ChangeChains.egg-info\PKG-INFO
18524writing dependency_links to ChimeraX_ChangeChains.egg-info\dependency_links.txt
18525writing requirements to ChimeraX_ChangeChains.egg-info\requires.txt
18526writing top-level names to ChimeraX_ChangeChains.egg-info\top_level.txt
18527writing manifest file 'ChimeraX_ChangeChains.egg-info\SOURCES.txt'
18528reading manifest file 'ChimeraX_ChangeChains.egg-info\SOURCES.txt'
18529writing manifest file 'ChimeraX_ChangeChains.egg-info\SOURCES.txt'
18530Copying ChimeraX_ChangeChains.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ChangeChains-1.1-py3.11.egg-info
18531running install_scripts
18532creating build\bdist.win-amd64\wheel\chimerax_changechains-1.1.dist-info\WHEEL
18533creating 'dist\chimerax_changechains-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18534adding 'chimerax/change_chains/__init__.py'
18535adding 'chimerax/change_chains/cmd.py'
18536adding 'chimerax/change_chains/tool.py'
18537adding 'chimerax_changechains-1.1.dist-info/METADATA'
18538adding 'chimerax_changechains-1.1.dist-info/WHEEL'
18539adding 'chimerax_changechains-1.1.dist-info/top_level.txt'
18540adding 'chimerax_changechains-1.1.dist-info/RECORD'
18541removing build\bdist.win-amd64\wheel
18542Distribution is in .\dist\ChimeraX_ChangeChains-1.1-py3-none-any.whl
18543INFO:
18544
18545make sync
18546make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
18547cp -av dist/*.whl ../../../build/sync
18548'dist/chimerax_changechains-1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_changechains-1.1-py3-none-any.whl'
18549make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
18550make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/change_chains'
18551make -C check_waters build
18552make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
18553if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18554 echo "missing ChimeraX application's python"; exit 1; \
18555else \
18556 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18557fi
18558INFO:
18559Executing: devel build . exit true
18560C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18561!!
18562
18563 ********************************************************************************
18564 Please consider removing the following classifiers in favor of a SPDX license expression:
18565
18566 License :: Free for non-commercial use
18567
18568 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18569 ********************************************************************************
18570
18571!!
18572 self._finalize_license_expression()
18573running build
18574running build_py
18575creating build\lib\chimerax\check_waters
18576copying src\compare.py -> build\lib\chimerax\check_waters
18577copying src\tool.py -> build\lib\chimerax\check_waters
18578copying src\__init__.py -> build\lib\chimerax\check_waters
18579running bdist_wheel
18580installing to build\bdist.win-amd64\wheel
18581running install
18582running install_lib
18583creating build\bdist.win-amd64\wheel
18584creating build\bdist.win-amd64\wheel\chimerax
18585creating build\bdist.win-amd64\wheel\chimerax\check_waters
18586copying build\lib\chimerax\check_waters\compare.py -> build\bdist.win-amd64\wheel\.\chimerax\check_waters
18587copying build\lib\chimerax\check_waters\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\check_waters
18588copying build\lib\chimerax\check_waters\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\check_waters
18589running install_egg_info
18590running egg_info
18591creating ChimeraX_CheckWaters.egg-info
18592writing ChimeraX_CheckWaters.egg-info\PKG-INFO
18593writing dependency_links to ChimeraX_CheckWaters.egg-info\dependency_links.txt
18594writing requirements to ChimeraX_CheckWaters.egg-info\requires.txt
18595writing top-level names to ChimeraX_CheckWaters.egg-info\top_level.txt
18596writing manifest file 'ChimeraX_CheckWaters.egg-info\SOURCES.txt'
18597reading manifest file 'ChimeraX_CheckWaters.egg-info\SOURCES.txt'
18598writing manifest file 'ChimeraX_CheckWaters.egg-info\SOURCES.txt'
18599Copying ChimeraX_CheckWaters.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_CheckWaters-1.5-py3.11.egg-info
18600running install_scripts
18601creating build\bdist.win-amd64\wheel\chimerax_checkwaters-1.5.dist-info\WHEEL
18602creating 'dist\chimerax_checkwaters-1.5-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18603adding 'chimerax/check_waters/__init__.py'
18604adding 'chimerax/check_waters/compare.py'
18605adding 'chimerax/check_waters/tool.py'
18606adding 'chimerax_checkwaters-1.5.dist-info/METADATA'
18607adding 'chimerax_checkwaters-1.5.dist-info/WHEEL'
18608adding 'chimerax_checkwaters-1.5.dist-info/top_level.txt'
18609adding 'chimerax_checkwaters-1.5.dist-info/RECORD'
18610removing build\bdist.win-amd64\wheel
18611Distribution is in .\dist\ChimeraX_CheckWaters-1.5-py3-none-any.whl
18612INFO:
18613
18614make sync
18615make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
18616cp -av dist/*.whl ../../../build/sync
18617'dist/chimerax_checkwaters-1.5-py3-none-any.whl' -> '../../../build/sync/chimerax_checkwaters-1.5-py3-none-any.whl'
18618make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
18619make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/check_waters'
18620make -C chem_group build
18621make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
18622PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode make_selectors.py
18623INFO:
18624UCSF ChimeraX version: 1.11.dev202509231826 (2025-09-23)
18625INFO:
18626© 2016-2025 Regents of the University of California. All rights reserved.
18627if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18628 echo "missing ChimeraX application's python"; exit 1; \
18629else \
18630 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18631fi
18632INFO:
18633Executing: devel build . exit true
18634C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18635!!
18636
18637 ********************************************************************************
18638 Please consider removing the following classifiers in favor of a SPDX license expression:
18639
18640 License :: Free for non-commercial use
18641
18642 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18643 ********************************************************************************
18644
18645!!
18646 self._finalize_license_expression()
18647running build
18648running build_py
18649creating build\lib.win-amd64-cpython-311\chimerax\chem_group
18650copying src\chem_group.py -> build\lib.win-amd64-cpython-311\chimerax\chem_group
18651copying src\support.py -> build\lib.win-amd64-cpython-311\chimerax\chem_group
18652copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\chem_group
18653running build_ext
18654building 'chimerax.chem_group._chem_group' extension
18655creating build\temp.win-amd64-cpython-311\Release\_cg
18656"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_cg/cg.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_cg\cg.obj
18657cg.cpp
18658C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
18659c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18660C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
18661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
18662c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18663C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
18664C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
18665C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
18666C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
18667C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
18668C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
18669C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
18670C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
18671C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
18672C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
18673C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
18674C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
18675C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
18676C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
18677C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
18678C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
18679C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
18680C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
18681c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18682C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
18683C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18684C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
18685C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18686C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
18687C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18688c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18689C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18690c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18691C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18692c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18693C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18694c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18695C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18696c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18697C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18698c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18699C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18700c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18701C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18702c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18703C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18704c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18705C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18706c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18707C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18708c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18709C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18710c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18711C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18712c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18713C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18714c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18715C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18716c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18717C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18718c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18719C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18720c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18721C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18722c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18723C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18724c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18725C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18726c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18727C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18728c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18729C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18730c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18731C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18732c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18733C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18734c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18735C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18736c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18737C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18738c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18739C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18740c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18741C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18742c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18743C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18744c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18745C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18746c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18747C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18748c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18749C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18750c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18751C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18752c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18753C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18754c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18755C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18756c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18757C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18758c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18759C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18760c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18761C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18762c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18763C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18764c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18765C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18766c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18767C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18768c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18769C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
18770c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18771C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
18772C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
18773C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
18774C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
18775C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
18776c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18777C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
18778C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18779C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
18780C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18781C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
18782C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18783C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
18784C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18785C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
18786C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18787C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
18788C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18789C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
18790C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18791C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
18792C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
18793c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18794C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
18795C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
18796c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18797C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
18798c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18799C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
18800C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
18801C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
18802C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
18803C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
18804C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
18805C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
18806C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
18807C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
18808C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
18809C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
18810C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
18811C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
18812C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
18813c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18814C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
18815C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
18816C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
18817C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
18818c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18819C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
18820C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
18821C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
18822C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
18823C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
18824C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
18825c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18826C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
18827C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18828C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
18829C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18830C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
18831C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18832C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
18833C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18834C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
18835C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18836C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
18837C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18838C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
18839C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18840C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
18841C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18842c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18843C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
18844C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
18845C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
18846c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18847C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
18848C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
18849C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
18850C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
18851C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
18852C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
18853C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
18854C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
18855C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
18856C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
18857c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18858C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
18859C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
18860C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
18861C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
18862C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
18863C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
18864C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
18865C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
18866C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
18867C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
18868c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
18869C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
18870C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
18871C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
18872C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
18873C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
18874C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
18875C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
18876_cg/cg.cpp(395): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
18877_cg/cg.cpp(479): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
18878"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib libpyinstance.lib libarrays.lib /EXPORT:PyInit__chem_group build\temp.win-amd64-cpython-311\Release\_cg\cg.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\chem_group\_chem_group.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_cg\_chem_group.cp311-win_amd64.lib
18879 Creating library build\temp.win-amd64-cpython-311\Release\_cg\_chem_group.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_cg\_chem_group.cp311-win_amd64.exp
18880Generating code
18881Finished generating code
18882running bdist_wheel
18883installing to build\bdist.win-amd64\wheel
18884running install
18885running install_lib
18886running build_ext
18887creating build\bdist.win-amd64\wheel
18888creating build\bdist.win-amd64\wheel\chimerax
18889creating build\bdist.win-amd64\wheel\chimerax\chem_group
18890copying build\lib.win-amd64-cpython-311\chimerax\chem_group\chem_group.py -> build\bdist.win-amd64\wheel\.\chimerax\chem_group
18891copying build\lib.win-amd64-cpython-311\chimerax\chem_group\support.py -> build\bdist.win-amd64\wheel\.\chimerax\chem_group
18892copying build\lib.win-amd64-cpython-311\chimerax\chem_group\_chem_group.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\chem_group
18893copying build\lib.win-amd64-cpython-311\chimerax\chem_group\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\chem_group
18894running install_egg_info
18895running egg_info
18896creating ChimeraX_ChemGroup.egg-info
18897writing ChimeraX_ChemGroup.egg-info\PKG-INFO
18898writing dependency_links to ChimeraX_ChemGroup.egg-info\dependency_links.txt
18899writing requirements to ChimeraX_ChemGroup.egg-info\requires.txt
18900writing top-level names to ChimeraX_ChemGroup.egg-info\top_level.txt
18901writing manifest file 'ChimeraX_ChemGroup.egg-info\SOURCES.txt'
18902reading manifest file 'ChimeraX_ChemGroup.egg-info\SOURCES.txt'
18903writing manifest file 'ChimeraX_ChemGroup.egg-info\SOURCES.txt'
18904Copying ChimeraX_ChemGroup.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ChemGroup-2.0.2-py3.11.egg-info
18905running install_scripts
18906C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
18907 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
18908creating build\bdist.win-amd64\wheel\chimerax_chemgroup-2.0.2.dist-info\WHEEL
18909creating 'dist\chimerax_chemgroup-2.0.2-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
18910adding 'chimerax/chem_group/__init__.py'
18911adding 'chimerax/chem_group/_chem_group.cp311-win_amd64.pyd'
18912adding 'chimerax/chem_group/chem_group.py'
18913adding 'chimerax/chem_group/support.py'
18914adding 'chimerax_chemgroup-2.0.2.dist-info/METADATA'
18915adding 'chimerax_chemgroup-2.0.2.dist-info/WHEEL'
18916adding 'chimerax_chemgroup-2.0.2.dist-info/top_level.txt'
18917adding 'chimerax_chemgroup-2.0.2.dist-info/RECORD'
18918removing build\bdist.win-amd64\wheel
18919Distribution is in .\dist\ChimeraX_ChemGroup-2.0.2-cp311-cp311-win_amd64.whl
18920INFO:
18921
18922make sync
18923make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
18924cp -av dist/*.whl ../../../build/sync
18925'dist/chimerax_chemgroup-2.0.2-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_chemgroup-2.0.2-cp311-cp311-win_amd64.whl'
18926make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
18927make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/chem_group'
18928make -C clashes build
18929make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
18930if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
18931 echo "missing ChimeraX application's python"; exit 1; \
18932else \
18933 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
18934fi
18935INFO:
18936Executing: devel build . exit true
18937C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
18938!!
18939
18940 ********************************************************************************
18941 Please consider removing the following classifiers in favor of a SPDX license expression:
18942
18943 License :: Free for non-commercial use
18944
18945 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
18946 ********************************************************************************
18947
18948!!
18949 self._finalize_license_expression()
18950running build
18951running build_py
18952creating build\lib\chimerax\clashes
18953copying src\clashes.py -> build\lib\chimerax\clashes
18954copying src\cmd.py -> build\lib\chimerax\clashes
18955copying src\gui.py -> build\lib\chimerax\clashes
18956copying src\settings.py -> build\lib\chimerax\clashes
18957copying src\tool.py -> build\lib\chimerax\clashes
18958copying src\__init__.py -> build\lib\chimerax\clashes
18959running bdist_wheel
18960installing to build\bdist.win-amd64\wheel
18961running install
18962running install_lib
18963creating build\bdist.win-amd64\wheel
18964creating build\bdist.win-amd64\wheel\chimerax
18965creating build\bdist.win-amd64\wheel\chimerax\clashes
18966copying build\lib\chimerax\clashes\clashes.py -> build\bdist.win-amd64\wheel\.\chimerax\clashes
18967copying build\lib\chimerax\clashes\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\clashes
18968copying build\lib\chimerax\clashes\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\clashes
18969copying build\lib\chimerax\clashes\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\clashes
18970copying build\lib\chimerax\clashes\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\clashes
18971copying build\lib\chimerax\clashes\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\clashes
18972running install_egg_info
18973running egg_info
18974creating ChimeraX_Clashes.egg-info
18975writing ChimeraX_Clashes.egg-info\PKG-INFO
18976writing dependency_links to ChimeraX_Clashes.egg-info\dependency_links.txt
18977writing requirements to ChimeraX_Clashes.egg-info\requires.txt
18978writing top-level names to ChimeraX_Clashes.egg-info\top_level.txt
18979writing manifest file 'ChimeraX_Clashes.egg-info\SOURCES.txt'
18980reading manifest file 'ChimeraX_Clashes.egg-info\SOURCES.txt'
18981writing manifest file 'ChimeraX_Clashes.egg-info\SOURCES.txt'
18982Copying ChimeraX_Clashes.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Clashes-2.3-py3.11.egg-info
18983running install_scripts
18984creating build\bdist.win-amd64\wheel\chimerax_clashes-2.3.dist-info\WHEEL
18985creating 'dist\chimerax_clashes-2.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
18986adding 'chimerax/clashes/__init__.py'
18987adding 'chimerax/clashes/clashes.py'
18988adding 'chimerax/clashes/cmd.py'
18989adding 'chimerax/clashes/gui.py'
18990adding 'chimerax/clashes/settings.py'
18991adding 'chimerax/clashes/tool.py'
18992adding 'chimerax_clashes-2.3.dist-info/METADATA'
18993adding 'chimerax_clashes-2.3.dist-info/WHEEL'
18994adding 'chimerax_clashes-2.3.dist-info/top_level.txt'
18995adding 'chimerax_clashes-2.3.dist-info/RECORD'
18996removing build\bdist.win-amd64\wheel
18997Distribution is in .\dist\ChimeraX_Clashes-2.3-py3-none-any.whl
18998INFO:
18999
19000make sync
19001make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
19002cp -av dist/*.whl ../../../build/sync
19003'dist/chimerax_clashes-2.3-py3-none-any.whl' -> '../../../build/sync/chimerax_clashes-2.3-py3-none-any.whl'
19004make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
19005make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/clashes'
19006make -C cmd_line build
19007make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
19008if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19009 echo "missing ChimeraX application's python"; exit 1; \
19010else \
19011 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19012fi
19013INFO:
19014Executing: devel build . exit true
19015C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19016!!
19017
19018 ********************************************************************************
19019 Please consider removing the following classifiers in favor of a SPDX license expression:
19020
19021 License :: Free for non-commercial use
19022
19023 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19024 ********************************************************************************
19025
19026!!
19027 self._finalize_license_expression()
19028running build
19029running build_py
19030creating build\lib\chimerax\cmd_line
19031copying src\settings.py -> build\lib\chimerax\cmd_line
19032copying src\tool.py -> build\lib\chimerax\cmd_line
19033copying src\__init__.py -> build\lib\chimerax\cmd_line
19034running bdist_wheel
19035installing to build\bdist.win-amd64\wheel
19036running install
19037running install_lib
19038creating build\bdist.win-amd64\wheel
19039creating build\bdist.win-amd64\wheel\chimerax
19040creating build\bdist.win-amd64\wheel\chimerax\cmd_line
19041copying build\lib\chimerax\cmd_line\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\cmd_line
19042copying build\lib\chimerax\cmd_line\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\cmd_line
19043copying build\lib\chimerax\cmd_line\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\cmd_line
19044running install_egg_info
19045running egg_info
19046creating ChimeraX_CommandLine.egg-info
19047writing ChimeraX_CommandLine.egg-info\PKG-INFO
19048writing dependency_links to ChimeraX_CommandLine.egg-info\dependency_links.txt
19049writing requirements to ChimeraX_CommandLine.egg-info\requires.txt
19050writing top-level names to ChimeraX_CommandLine.egg-info\top_level.txt
19051writing manifest file 'ChimeraX_CommandLine.egg-info\SOURCES.txt'
19052reading manifest file 'ChimeraX_CommandLine.egg-info\SOURCES.txt'
19053writing manifest file 'ChimeraX_CommandLine.egg-info\SOURCES.txt'
19054Copying ChimeraX_CommandLine.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_CommandLine-1.3.0-py3.11.egg-info
19055running install_scripts
19056creating build\bdist.win-amd64\wheel\chimerax_commandline-1.3.0.dist-info\WHEEL
19057creating 'dist\chimerax_commandline-1.3.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
19058adding 'chimerax/cmd_line/__init__.py'
19059adding 'chimerax/cmd_line/settings.py'
19060adding 'chimerax/cmd_line/tool.py'
19061adding 'chimerax_commandline-1.3.0.dist-info/METADATA'
19062adding 'chimerax_commandline-1.3.0.dist-info/WHEEL'
19063adding 'chimerax_commandline-1.3.0.dist-info/top_level.txt'
19064adding 'chimerax_commandline-1.3.0.dist-info/RECORD'
19065removing build\bdist.win-amd64\wheel
19066Distribution is in .\dist\ChimeraX_CommandLine-1.3.0-py3-none-any.whl
19067INFO:
19068
19069make sync
19070make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
19071cp -av dist/*.whl ../../../build/sync
19072'dist/chimerax_commandline-1.3.0-py3-none-any.whl' -> '../../../build/sync/chimerax_commandline-1.3.0-py3-none-any.whl'
19073make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
19074make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/cmd_line'
19075make -C color_actions build
19076make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
19077if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19078 echo "missing ChimeraX application's python"; exit 1; \
19079else \
19080 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19081fi
19082INFO:
19083Executing: devel build . exit true
19084C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19085!!
19086
19087 ********************************************************************************
19088 Please consider removing the following classifiers in favor of a SPDX license expression:
19089
19090 License :: Free for non-commercial use
19091
19092 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19093 ********************************************************************************
19094
19095!!
19096 self._finalize_license_expression()
19097running build
19098running build_py
19099creating build\lib\chimerax\color_actions
19100copying src\tool.py -> build\lib\chimerax\color_actions
19101copying src\__init__.py -> build\lib\chimerax\color_actions
19102running bdist_wheel
19103installing to build\bdist.win-amd64\wheel
19104running install
19105running install_lib
19106creating build\bdist.win-amd64\wheel
19107creating build\bdist.win-amd64\wheel\chimerax
19108creating build\bdist.win-amd64\wheel\chimerax\color_actions
19109copying build\lib\chimerax\color_actions\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\color_actions
19110copying build\lib\chimerax\color_actions\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\color_actions
19111running install_egg_info
19112running egg_info
19113creating ChimeraX_ColorActions.egg-info
19114writing ChimeraX_ColorActions.egg-info\PKG-INFO
19115writing dependency_links to ChimeraX_ColorActions.egg-info\dependency_links.txt
19116writing requirements to ChimeraX_ColorActions.egg-info\requires.txt
19117writing top-level names to ChimeraX_ColorActions.egg-info\top_level.txt
19118writing manifest file 'ChimeraX_ColorActions.egg-info\SOURCES.txt'
19119reading manifest file 'ChimeraX_ColorActions.egg-info\SOURCES.txt'
19120writing manifest file 'ChimeraX_ColorActions.egg-info\SOURCES.txt'
19121Copying ChimeraX_ColorActions.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ColorActions-1.0.5-py3.11.egg-info
19122running install_scripts
19123creating build\bdist.win-amd64\wheel\chimerax_coloractions-1.0.5.dist-info\WHEEL
19124creating 'dist\chimerax_coloractions-1.0.5-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
19125adding 'chimerax/color_actions/__init__.py'
19126adding 'chimerax/color_actions/tool.py'
19127adding 'chimerax_coloractions-1.0.5.dist-info/METADATA'
19128adding 'chimerax_coloractions-1.0.5.dist-info/WHEEL'
19129adding 'chimerax_coloractions-1.0.5.dist-info/top_level.txt'
19130adding 'chimerax_coloractions-1.0.5.dist-info/RECORD'
19131removing build\bdist.win-amd64\wheel
19132Distribution is in .\dist\ChimeraX_ColorActions-1.0.5-py3-none-any.whl
19133INFO:
19134
19135make sync
19136make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
19137cp -av dist/*.whl ../../../build/sync
19138'dist/chimerax_coloractions-1.0.5-py3-none-any.whl' -> '../../../build/sync/chimerax_coloractions-1.0.5-py3-none-any.whl'
19139make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
19140make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_actions'
19141make -C color_globe build
19142make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
19143if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19144 echo "missing ChimeraX application's python"; exit 1; \
19145else \
19146 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19147fi
19148INFO:
19149Executing: devel build . exit true
19150C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19151!!
19152
19153 ********************************************************************************
19154 Please consider removing the following classifiers in favor of a SPDX license expression:
19155
19156 License :: Free for non-commercial use
19157
19158 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19159 ********************************************************************************
19160
19161!!
19162 self._finalize_license_expression()
19163running build
19164running build_py
19165creating build\lib\chimerax\color_globe
19166copying src\dres.py -> build\lib\chimerax\color_globe
19167copying src\__init__.py -> build\lib\chimerax\color_globe
19168running bdist_wheel
19169installing to build\bdist.win-amd64\wheel
19170running install
19171running install_lib
19172creating build\bdist.win-amd64\wheel
19173creating build\bdist.win-amd64\wheel\chimerax
19174creating build\bdist.win-amd64\wheel\chimerax\color_globe
19175copying build\lib\chimerax\color_globe\dres.py -> build\bdist.win-amd64\wheel\.\chimerax\color_globe
19176copying build\lib\chimerax\color_globe\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\color_globe
19177running install_egg_info
19178running egg_info
19179creating ChimeraX_ColorGlobe.egg-info
19180writing ChimeraX_ColorGlobe.egg-info\PKG-INFO
19181writing dependency_links to ChimeraX_ColorGlobe.egg-info\dependency_links.txt
19182writing requirements to ChimeraX_ColorGlobe.egg-info\requires.txt
19183writing top-level names to ChimeraX_ColorGlobe.egg-info\top_level.txt
19184writing manifest file 'ChimeraX_ColorGlobe.egg-info\SOURCES.txt'
19185reading manifest file 'ChimeraX_ColorGlobe.egg-info\SOURCES.txt'
19186writing manifest file 'ChimeraX_ColorGlobe.egg-info\SOURCES.txt'
19187Copying ChimeraX_ColorGlobe.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ColorGlobe-1.0-py3.11.egg-info
19188running install_scripts
19189creating build\bdist.win-amd64\wheel\chimerax_colorglobe-1.0.dist-info\WHEEL
19190creating 'dist\chimerax_colorglobe-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
19191adding 'chimerax/color_globe/__init__.py'
19192adding 'chimerax/color_globe/dres.py'
19193adding 'chimerax_colorglobe-1.0.dist-info/METADATA'
19194adding 'chimerax_colorglobe-1.0.dist-info/WHEEL'
19195adding 'chimerax_colorglobe-1.0.dist-info/top_level.txt'
19196adding 'chimerax_colorglobe-1.0.dist-info/RECORD'
19197removing build\bdist.win-amd64\wheel
19198Distribution is in .\dist\ChimeraX_ColorGlobe-1.0-py3-none-any.whl
19199INFO:
19200
19201make sync
19202make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
19203cp -av dist/*.whl ../../../build/sync
19204'dist/chimerax_colorglobe-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_colorglobe-1.0-py3-none-any.whl'
19205make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
19206make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_globe'
19207make -C color_key build
19208make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
19209if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19210 echo "missing ChimeraX application's python"; exit 1; \
19211else \
19212 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19213fi
19214INFO:
19215Executing: devel build . exit true
19216C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19217!!
19218
19219 ********************************************************************************
19220 Please consider removing the following classifiers in favor of a SPDX license expression:
19221
19222 License :: Free for non-commercial use
19223
19224 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19225 ********************************************************************************
19226
19227!!
19228 self._finalize_license_expression()
19229running build
19230running build_py
19231creating build\lib\chimerax\color_key
19232copying src\cmd.py -> build\lib\chimerax\color_key
19233copying src\model.py -> build\lib\chimerax\color_key
19234copying src\mouse_key.py -> build\lib\chimerax\color_key
19235copying src\tool.py -> build\lib\chimerax\color_key
19236copying src\__init__.py -> build\lib\chimerax\color_key
19237creating build\lib\chimerax\color_key\icons
19238copying src\icons\ckicon.png -> build\lib\chimerax\color_key\icons
19239copying src\icons\ckicon0.png -> build\lib\chimerax\color_key\icons
19240copying src\icons\ckiconvertical.png -> build\lib\chimerax\color_key\icons
19241running bdist_wheel
19242installing to build\bdist.win-amd64\wheel
19243running install
19244running install_lib
19245creating build\bdist.win-amd64\wheel
19246creating build\bdist.win-amd64\wheel\chimerax
19247creating build\bdist.win-amd64\wheel\chimerax\color_key
19248copying build\lib\chimerax\color_key\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\color_key
19249creating build\bdist.win-amd64\wheel\chimerax\color_key\icons
19250copying build\lib\chimerax\color_key\icons\ckicon.png -> build\bdist.win-amd64\wheel\.\chimerax\color_key\icons
19251copying build\lib\chimerax\color_key\icons\ckicon0.png -> build\bdist.win-amd64\wheel\.\chimerax\color_key\icons
19252copying build\lib\chimerax\color_key\icons\ckiconvertical.png -> build\bdist.win-amd64\wheel\.\chimerax\color_key\icons
19253copying build\lib\chimerax\color_key\model.py -> build\bdist.win-amd64\wheel\.\chimerax\color_key
19254copying build\lib\chimerax\color_key\mouse_key.py -> build\bdist.win-amd64\wheel\.\chimerax\color_key
19255copying build\lib\chimerax\color_key\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\color_key
19256copying build\lib\chimerax\color_key\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\color_key
19257running install_egg_info
19258running egg_info
19259creating ChimeraX_ColorKey.egg-info
19260writing ChimeraX_ColorKey.egg-info\PKG-INFO
19261writing dependency_links to ChimeraX_ColorKey.egg-info\dependency_links.txt
19262writing requirements to ChimeraX_ColorKey.egg-info\requires.txt
19263writing top-level names to ChimeraX_ColorKey.egg-info\top_level.txt
19264writing manifest file 'ChimeraX_ColorKey.egg-info\SOURCES.txt'
19265reading manifest file 'ChimeraX_ColorKey.egg-info\SOURCES.txt'
19266writing manifest file 'ChimeraX_ColorKey.egg-info\SOURCES.txt'
19267Copying ChimeraX_ColorKey.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ColorKey-1.5.8-py3.11.egg-info
19268running install_scripts
19269creating build\bdist.win-amd64\wheel\chimerax_colorkey-1.5.8.dist-info\WHEEL
19270creating 'dist\chimerax_colorkey-1.5.8-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
19271adding 'chimerax/color_key/__init__.py'
19272adding 'chimerax/color_key/cmd.py'
19273adding 'chimerax/color_key/model.py'
19274adding 'chimerax/color_key/mouse_key.py'
19275adding 'chimerax/color_key/tool.py'
19276adding 'chimerax/color_key/icons/ckicon.png'
19277adding 'chimerax/color_key/icons/ckicon0.png'
19278adding 'chimerax/color_key/icons/ckiconvertical.png'
19279adding 'chimerax_colorkey-1.5.8.dist-info/METADATA'
19280adding 'chimerax_colorkey-1.5.8.dist-info/WHEEL'
19281adding 'chimerax_colorkey-1.5.8.dist-info/top_level.txt'
19282adding 'chimerax_colorkey-1.5.8.dist-info/RECORD'
19283removing build\bdist.win-amd64\wheel
19284Distribution is in .\dist\ChimeraX_ColorKey-1.5.8-py3-none-any.whl
19285INFO:
19286
19287make sync
19288make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
19289cp -av dist/*.whl ../../../build/sync
19290'dist/chimerax_colorkey-1.5.8-py3-none-any.whl' -> '../../../build/sync/chimerax_colorkey-1.5.8-py3-none-any.whl'
19291make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
19292make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/color_key'
19293make -C connect_structure build
19294make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
19295if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19296 echo "missing ChimeraX application's python"; exit 1; \
19297else \
19298 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19299fi
19300INFO:
19301Executing: devel build . exit true
19302C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19303!!
19304
19305 ********************************************************************************
19306 Please consider removing the following classifiers in favor of a SPDX license expression:
19307
19308 License :: Free for non-commercial use
19309
19310 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19311 ********************************************************************************
19312
19313!!
19314 self._finalize_license_expression()
19315running build
19316running build_py
19317creating build\lib.win-amd64-cpython-311\chimerax\connect_structure
19318copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\connect_structure
19319running build_ext
19320building 'chimerax.connect_structure._cs' extension
19321creating build\temp.win-amd64-cpython-311\Release\connect_cpp
19322"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpconnect_cpp/connect.cpp /Fobuild\temp.win-amd64-cpython-311\Release\connect_cpp\connect.obj
19323connect.cpp
19324C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
19325c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19326C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
19327C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
19328c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19329C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
19330C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
19331C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
19332C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
19333C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
19334C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
19335C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
19336C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
19337C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19338C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
19339C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
19340C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
19341C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
19342C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
19343C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
19344C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
19345C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19346C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
19347c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19348C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
19349C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19350C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
19351C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19352C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
19353C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19354c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19355C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19356c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19357C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19358c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19359C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19360c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19361C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19362c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19363C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19364c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19365C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19366c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19367C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19368c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19369C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19370c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19371C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19372c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19373C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19374c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19375C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19376c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19377C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19378c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19379C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19380c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19381C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19382c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19383C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19384c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19385C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19386c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19387C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19388c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19389C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19390c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19391C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19392c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19393C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19394c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19395C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19396c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19397C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19398c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19399C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19400c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19401C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19402c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19403C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19404c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19405C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19406c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19408c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19410c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19411C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19412c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19413C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19414c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19415C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19416c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19417C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19418c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19419C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19420c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19424c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19425C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19426c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19427C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19428c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19429C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19430c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19431C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19432c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19433C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19434c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19435C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
19436c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
19438C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
19439C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
19440C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
19441C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
19442c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19443C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
19444C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19445C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
19446C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19447C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
19448C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
19450C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19451C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
19452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19453C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
19454C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19455C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
19456C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19457C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
19458C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
19459c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19460C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
19461C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
19462c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19463C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
19464c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19465C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
19466C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
19467C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
19468C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
19469C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
19470C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
19471C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
19472C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
19473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
19474C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
19475C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
19476C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
19477C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
19478C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
19479c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19480C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
19481C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
19482C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
19483C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
19484c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19485C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
19486C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
19487C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
19488C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
19489C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
19490C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
19491c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19492C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
19493C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19494C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
19495C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19496C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
19497C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
19499C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19500C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
19501C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19502C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
19503C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19504C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
19505C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19506C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
19507C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19508c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19509C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
19510C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
19511C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
19512c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19513C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
19514C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
19515C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
19516C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
19517C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
19518C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
19519C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
19520C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
19521C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
19522C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
19523c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19524C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
19525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
19526C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
19527C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
19528C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
19529C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
19530C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
19531C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
19532C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
19533C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
19534c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19535C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
19536C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
19537C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
19538C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
19539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
19540C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
19541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
19542C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
19543c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19544C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
19545C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
19546c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19547C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
19548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
19549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
19550C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
19551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
19552c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19553C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
19554C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
19555c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19556C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
19557C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19558C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
19559C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19560c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19562c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19563C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19564c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19565C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19566C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19567C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19568C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
19569C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19570C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19571C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19572C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19573C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19574C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19575C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19576C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19577C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
19579C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19581C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19582C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19583C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19584C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19585C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19586C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19587C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19588C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19589C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
19591C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
19592C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
19593C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
19594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
19595c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
19596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
19597C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
19598C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
19599C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
19600C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/search.h(77): warning C4251: 'atomstruct::AtomSearchTree::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::AtomSearchTree'
19601C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
19602connect_cpp/connect.cpp(88): warning C4244: 'initializing': conversion from 'atomstruct::Real' to 'float', possible loss of data
19603"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib libpyinstance.lib /EXPORT:PyInit__cs build\temp.win-amd64-cpython-311\Release\connect_cpp\connect.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\connect_structure\_cs.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\connect_cpp\_cs.cp311-win_amd64.lib
19604 Creating library build\temp.win-amd64-cpython-311\Release\connect_cpp\_cs.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\connect_cpp\_cs.cp311-win_amd64.exp
19605Generating code
19606Finished generating code
19607running bdist_wheel
19608installing to build\bdist.win-amd64\wheel
19609running install
19610running install_lib
19611running build_ext
19612creating build\bdist.win-amd64\wheel
19613creating build\bdist.win-amd64\wheel\chimerax
19614creating build\bdist.win-amd64\wheel\chimerax\connect_structure
19615copying build\lib.win-amd64-cpython-311\chimerax\connect_structure\_cs.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\connect_structure
19616copying build\lib.win-amd64-cpython-311\chimerax\connect_structure\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\connect_structure
19617running install_egg_info
19618running egg_info
19619creating ChimeraX_ConnectStructure.egg-info
19620writing ChimeraX_ConnectStructure.egg-info\PKG-INFO
19621writing dependency_links to ChimeraX_ConnectStructure.egg-info\dependency_links.txt
19622writing requirements to ChimeraX_ConnectStructure.egg-info\requires.txt
19623writing top-level names to ChimeraX_ConnectStructure.egg-info\top_level.txt
19624writing manifest file 'ChimeraX_ConnectStructure.egg-info\SOURCES.txt'
19625reading manifest file 'ChimeraX_ConnectStructure.egg-info\SOURCES.txt'
19626writing manifest file 'ChimeraX_ConnectStructure.egg-info\SOURCES.txt'
19627Copying ChimeraX_ConnectStructure.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ConnectStructure-2.0.1-py3.11.egg-info
19628running install_scripts
19629C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
19630 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
19631creating build\bdist.win-amd64\wheel\chimerax_connectstructure-2.0.1.dist-info\WHEEL
19632creating 'dist\chimerax_connectstructure-2.0.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
19633adding 'chimerax/connect_structure/__init__.py'
19634adding 'chimerax/connect_structure/_cs.cp311-win_amd64.pyd'
19635adding 'chimerax_connectstructure-2.0.1.dist-info/METADATA'
19636adding 'chimerax_connectstructure-2.0.1.dist-info/WHEEL'
19637adding 'chimerax_connectstructure-2.0.1.dist-info/top_level.txt'
19638adding 'chimerax_connectstructure-2.0.1.dist-info/RECORD'
19639removing build\bdist.win-amd64\wheel
19640Distribution is in .\dist\ChimeraX_ConnectStructure-2.0.1-cp311-cp311-win_amd64.whl
19641INFO:
19642
19643make sync
19644make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
19645cp -av dist/*.whl ../../../build/sync
19646'dist/chimerax_connectstructure-2.0.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_connectstructure-2.0.1-cp311-cp311-win_amd64.whl'
19647make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
19648make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/connect_structure'
19649make -C core_formats build
19650make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
19651if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19652 echo "missing ChimeraX application's python"; exit 1; \
19653else \
19654 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19655fi
19656INFO:
19657Executing: devel build . exit true
19658C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19659!!
19660
19661 ********************************************************************************
19662 Please consider removing the following classifiers in favor of a SPDX license expression:
19663
19664 License :: Free for non-commercial use
19665
19666 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19667 ********************************************************************************
19668
19669!!
19670 self._finalize_license_expression()
19671running build
19672running build_py
19673creating build\lib\chimerax\core_formats
19674copying src\gui.py -> build\lib\chimerax\core_formats
19675copying src\web_fetch.py -> build\lib\chimerax\core_formats
19676copying src\__init__.py -> build\lib\chimerax\core_formats
19677running bdist_wheel
19678installing to build\bdist.win-amd64\wheel
19679running install
19680running install_lib
19681creating build\bdist.win-amd64\wheel
19682creating build\bdist.win-amd64\wheel\chimerax
19683creating build\bdist.win-amd64\wheel\chimerax\core_formats
19684copying build\lib\chimerax\core_formats\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\core_formats
19685copying build\lib\chimerax\core_formats\web_fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\core_formats
19686copying build\lib\chimerax\core_formats\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\core_formats
19687running install_egg_info
19688running egg_info
19689creating ChimeraX_CoreFormats.egg-info
19690writing ChimeraX_CoreFormats.egg-info\PKG-INFO
19691writing dependency_links to ChimeraX_CoreFormats.egg-info\dependency_links.txt
19692writing requirements to ChimeraX_CoreFormats.egg-info\requires.txt
19693writing top-level names to ChimeraX_CoreFormats.egg-info\top_level.txt
19694writing manifest file 'ChimeraX_CoreFormats.egg-info\SOURCES.txt'
19695reading manifest file 'ChimeraX_CoreFormats.egg-info\SOURCES.txt'
19696writing manifest file 'ChimeraX_CoreFormats.egg-info\SOURCES.txt'
19697Copying ChimeraX_CoreFormats.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_CoreFormats-1.2-py3.11.egg-info
19698running install_scripts
19699creating build\bdist.win-amd64\wheel\chimerax_coreformats-1.2.dist-info\WHEEL
19700creating 'dist\chimerax_coreformats-1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
19701adding 'chimerax/core_formats/__init__.py'
19702adding 'chimerax/core_formats/gui.py'
19703adding 'chimerax/core_formats/web_fetch.py'
19704adding 'chimerax_coreformats-1.2.dist-info/METADATA'
19705adding 'chimerax_coreformats-1.2.dist-info/WHEEL'
19706adding 'chimerax_coreformats-1.2.dist-info/top_level.txt'
19707adding 'chimerax_coreformats-1.2.dist-info/RECORD'
19708removing build\bdist.win-amd64\wheel
19709Distribution is in .\dist\ChimeraX_CoreFormats-1.2-py3-none-any.whl
19710INFO:
19711
19712make sync
19713make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
19714cp -av dist/*.whl ../../../build/sync
19715'dist/chimerax_coreformats-1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_coreformats-1.2-py3-none-any.whl'
19716make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
19717make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/core_formats'
19718make -C coulombic build
19719make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
19720if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19721 echo "missing ChimeraX application's python"; exit 1; \
19722else \
19723 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19724fi
19725INFO:
19726Executing: devel build . exit true
19727C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19728!!
19729
19730 ********************************************************************************
19731 Please consider removing the following classifiers in favor of a SPDX license expression:
19732
19733 License :: Free for non-commercial use
19734
19735 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19736 ********************************************************************************
19737
19738!!
19739 self._finalize_license_expression()
19740running build
19741running build_py
19742creating build\lib.win-amd64-cpython-311\chimerax\coulombic
19743copying src\cmd.py -> build\lib.win-amd64-cpython-311\chimerax\coulombic
19744copying src\coulombic.py -> build\lib.win-amd64-cpython-311\chimerax\coulombic
19745copying src\create_data.py -> build\lib.win-amd64-cpython-311\chimerax\coulombic
19746copying src\data.py -> build\lib.win-amd64-cpython-311\chimerax\coulombic
19747copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\coulombic
19748running build_ext
19749building 'chimerax.coulombic._esp' extension
19750creating build\temp.win-amd64-cpython-311\Release\esp_cpp
19751"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpesp_cpp/esp.cpp /Fobuild\temp.win-amd64-cpython-311\Release\esp_cpp\esp.obj
19752esp.cpp
19753esp_cpp/esp.cpp(39): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
19754esp_cpp/esp.cpp(53): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
19755"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__esp build\temp.win-amd64-cpython-311\Release\esp_cpp\esp.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\coulombic\_esp.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\esp_cpp\_esp.cp311-win_amd64.lib
19756 Creating library build\temp.win-amd64-cpython-311\Release\esp_cpp\_esp.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\esp_cpp\_esp.cp311-win_amd64.exp
19757Generating code
19758Finished generating code
19759running bdist_wheel
19760installing to build\bdist.win-amd64\wheel
19761running install
19762running install_lib
19763running build_ext
19764creating build\bdist.win-amd64\wheel
19765creating build\bdist.win-amd64\wheel\chimerax
19766creating build\bdist.win-amd64\wheel\chimerax\coulombic
19767copying build\lib.win-amd64-cpython-311\chimerax\coulombic\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\coulombic
19768copying build\lib.win-amd64-cpython-311\chimerax\coulombic\coulombic.py -> build\bdist.win-amd64\wheel\.\chimerax\coulombic
19769copying build\lib.win-amd64-cpython-311\chimerax\coulombic\create_data.py -> build\bdist.win-amd64\wheel\.\chimerax\coulombic
19770copying build\lib.win-amd64-cpython-311\chimerax\coulombic\data.py -> build\bdist.win-amd64\wheel\.\chimerax\coulombic
19771copying build\lib.win-amd64-cpython-311\chimerax\coulombic\_esp.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\coulombic
19772copying build\lib.win-amd64-cpython-311\chimerax\coulombic\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\coulombic
19773running install_egg_info
19774running egg_info
19775creating ChimeraX_coulombic.egg-info
19776writing ChimeraX_coulombic.egg-info\PKG-INFO
19777writing dependency_links to ChimeraX_coulombic.egg-info\dependency_links.txt
19778writing requirements to ChimeraX_coulombic.egg-info\requires.txt
19779writing top-level names to ChimeraX_coulombic.egg-info\top_level.txt
19780writing manifest file 'ChimeraX_coulombic.egg-info\SOURCES.txt'
19781reading manifest file 'ChimeraX_coulombic.egg-info\SOURCES.txt'
19782writing manifest file 'ChimeraX_coulombic.egg-info\SOURCES.txt'
19783Copying ChimeraX_coulombic.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_coulombic-1.4.5-py3.11.egg-info
19784running install_scripts
19785C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
19786 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
19787creating build\bdist.win-amd64\wheel\chimerax_coulombic-1.4.5.dist-info\WHEEL
19788creating 'dist\chimerax_coulombic-1.4.5-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
19789adding 'chimerax/coulombic/__init__.py'
19790adding 'chimerax/coulombic/_esp.cp311-win_amd64.pyd'
19791adding 'chimerax/coulombic/cmd.py'
19792adding 'chimerax/coulombic/coulombic.py'
19793adding 'chimerax/coulombic/create_data.py'
19794adding 'chimerax/coulombic/data.py'
19795adding 'chimerax_coulombic-1.4.5.dist-info/METADATA'
19796adding 'chimerax_coulombic-1.4.5.dist-info/WHEEL'
19797adding 'chimerax_coulombic-1.4.5.dist-info/top_level.txt'
19798adding 'chimerax_coulombic-1.4.5.dist-info/RECORD'
19799removing build\bdist.win-amd64\wheel
19800Distribution is in .\dist\ChimeraX_coulombic-1.4.5-cp311-cp311-win_amd64.whl
19801INFO:
19802
19803make sync
19804make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
19805cp -av dist/*.whl ../../../build/sync
19806'dist/chimerax_coulombic-1.4.5-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_coulombic-1.4.5-cp311-cp311-win_amd64.whl'
19807make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
19808make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/coulombic'
19809make -C crosslinks build
19810make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
19811if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19812 echo "missing ChimeraX application's python"; exit 1; \
19813else \
19814 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19815fi
19816INFO:
19817Executing: devel build . exit true
19818C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19819!!
19820
19821 ********************************************************************************
19822 Please consider removing the following classifiers in favor of a SPDX license expression:
19823
19824 License :: Free for non-commercial use
19825
19826 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19827 ********************************************************************************
19828
19829!!
19830 self._finalize_license_expression()
19831running build
19832running build_py
19833creating build\lib\chimerax\crosslinks
19834copying src\chainplot.py -> build\lib\chimerax\crosslinks
19835copying src\crosslinks.py -> build\lib\chimerax\crosslinks
19836copying src\lengths.py -> build\lib\chimerax\crosslinks
19837copying src\__init__.py -> build\lib\chimerax\crosslinks
19838running bdist_wheel
19839installing to build\bdist.win-amd64\wheel
19840running install
19841running install_lib
19842creating build\bdist.win-amd64\wheel
19843creating build\bdist.win-amd64\wheel\chimerax
19844creating build\bdist.win-amd64\wheel\chimerax\crosslinks
19845copying build\lib\chimerax\crosslinks\chainplot.py -> build\bdist.win-amd64\wheel\.\chimerax\crosslinks
19846copying build\lib\chimerax\crosslinks\crosslinks.py -> build\bdist.win-amd64\wheel\.\chimerax\crosslinks
19847copying build\lib\chimerax\crosslinks\lengths.py -> build\bdist.win-amd64\wheel\.\chimerax\crosslinks
19848copying build\lib\chimerax\crosslinks\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\crosslinks
19849running install_egg_info
19850running egg_info
19851creating ChimeraX_Crosslinks.egg-info
19852writing ChimeraX_Crosslinks.egg-info\PKG-INFO
19853writing dependency_links to ChimeraX_Crosslinks.egg-info\dependency_links.txt
19854writing requirements to ChimeraX_Crosslinks.egg-info\requires.txt
19855writing top-level names to ChimeraX_Crosslinks.egg-info\top_level.txt
19856writing manifest file 'ChimeraX_Crosslinks.egg-info\SOURCES.txt'
19857reading manifest file 'ChimeraX_Crosslinks.egg-info\SOURCES.txt'
19858writing manifest file 'ChimeraX_Crosslinks.egg-info\SOURCES.txt'
19859Copying ChimeraX_Crosslinks.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Crosslinks-1.0-py3.11.egg-info
19860running install_scripts
19861creating build\bdist.win-amd64\wheel\chimerax_crosslinks-1.0.dist-info\WHEEL
19862creating 'dist\chimerax_crosslinks-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
19863adding 'chimerax/crosslinks/__init__.py'
19864adding 'chimerax/crosslinks/chainplot.py'
19865adding 'chimerax/crosslinks/crosslinks.py'
19866adding 'chimerax/crosslinks/lengths.py'
19867adding 'chimerax_crosslinks-1.0.dist-info/METADATA'
19868adding 'chimerax_crosslinks-1.0.dist-info/WHEEL'
19869adding 'chimerax_crosslinks-1.0.dist-info/top_level.txt'
19870adding 'chimerax_crosslinks-1.0.dist-info/RECORD'
19871removing build\bdist.win-amd64\wheel
19872Distribution is in .\dist\ChimeraX_Crosslinks-1.0-py3-none-any.whl
19873INFO:
19874
19875make sync
19876make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
19877cp -av dist/*.whl ../../../build/sync
19878'dist/chimerax_crosslinks-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_crosslinks-1.0-py3-none-any.whl'
19879make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
19880make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crosslinks'
19881make -C crystal build
19882make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
19883if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19884 echo "missing ChimeraX application's python"; exit 1; \
19885else \
19886 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19887fi
19888INFO:
19889Executing: devel build . exit true
19890C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19891!!
19892
19893 ********************************************************************************
19894 Please consider removing the following classifiers in favor of a SPDX license expression:
19895
19896 License :: Free for non-commercial use
19897
19898 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19899 ********************************************************************************
19900
19901!!
19902 self._finalize_license_expression()
19903running build
19904running build_py
19905creating build\lib\chimerax\crystal
19906copying src\space_groups.py -> build\lib\chimerax\crystal
19907copying src\unit_cell.py -> build\lib\chimerax\crystal
19908copying src\__init__.py -> build\lib\chimerax\crystal
19909running bdist_wheel
19910installing to build\bdist.win-amd64\wheel
19911running install
19912running install_lib
19913creating build\bdist.win-amd64\wheel
19914creating build\bdist.win-amd64\wheel\chimerax
19915creating build\bdist.win-amd64\wheel\chimerax\crystal
19916copying build\lib\chimerax\crystal\space_groups.py -> build\bdist.win-amd64\wheel\.\chimerax\crystal
19917copying build\lib\chimerax\crystal\unit_cell.py -> build\bdist.win-amd64\wheel\.\chimerax\crystal
19918copying build\lib\chimerax\crystal\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\crystal
19919running install_egg_info
19920running egg_info
19921creating ChimeraX_Crystal.egg-info
19922writing ChimeraX_Crystal.egg-info\PKG-INFO
19923writing dependency_links to ChimeraX_Crystal.egg-info\dependency_links.txt
19924writing requirements to ChimeraX_Crystal.egg-info\requires.txt
19925writing top-level names to ChimeraX_Crystal.egg-info\top_level.txt
19926writing manifest file 'ChimeraX_Crystal.egg-info\SOURCES.txt'
19927reading manifest file 'ChimeraX_Crystal.egg-info\SOURCES.txt'
19928writing manifest file 'ChimeraX_Crystal.egg-info\SOURCES.txt'
19929Copying ChimeraX_Crystal.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Crystal-1.0-py3.11.egg-info
19930running install_scripts
19931creating build\bdist.win-amd64\wheel\chimerax_crystal-1.0.dist-info\WHEEL
19932creating 'dist\chimerax_crystal-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
19933adding 'chimerax/crystal/__init__.py'
19934adding 'chimerax/crystal/space_groups.py'
19935adding 'chimerax/crystal/unit_cell.py'
19936adding 'chimerax_crystal-1.0.dist-info/METADATA'
19937adding 'chimerax_crystal-1.0.dist-info/WHEEL'
19938adding 'chimerax_crystal-1.0.dist-info/top_level.txt'
19939adding 'chimerax_crystal-1.0.dist-info/RECORD'
19940removing build\bdist.win-amd64\wheel
19941Distribution is in .\dist\ChimeraX_Crystal-1.0-py3-none-any.whl
19942INFO:
19943
19944make sync
19945make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
19946cp -av dist/*.whl ../../../build/sync
19947'dist/chimerax_crystal-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_crystal-1.0-py3-none-any.whl'
19948make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
19949make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal'
19950make -C crystal_contacts build
19951make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
19952if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
19953 echo "missing ChimeraX application's python"; exit 1; \
19954else \
19955 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
19956fi
19957INFO:
19958Executing: devel build . exit true
19959C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
19960!!
19961
19962 ********************************************************************************
19963 Please consider removing the following classifiers in favor of a SPDX license expression:
19964
19965 License :: Free for non-commercial use
19966
19967 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
19968 ********************************************************************************
19969
19970!!
19971 self._finalize_license_expression()
19972running build
19973running build_py
19974creating build\lib\chimerax\crystal_contacts
19975copying src\crystal.py -> build\lib\chimerax\crystal_contacts
19976copying src\crystalcmd.py -> build\lib\chimerax\crystal_contacts
19977copying src\crystalgui.py -> build\lib\chimerax\crystal_contacts
19978copying src\__init__.py -> build\lib\chimerax\crystal_contacts
19979running bdist_wheel
19980installing to build\bdist.win-amd64\wheel
19981running install
19982running install_lib
19983creating build\bdist.win-amd64\wheel
19984creating build\bdist.win-amd64\wheel\chimerax
19985creating build\bdist.win-amd64\wheel\chimerax\crystal_contacts
19986copying build\lib\chimerax\crystal_contacts\crystal.py -> build\bdist.win-amd64\wheel\.\chimerax\crystal_contacts
19987copying build\lib\chimerax\crystal_contacts\crystalcmd.py -> build\bdist.win-amd64\wheel\.\chimerax\crystal_contacts
19988copying build\lib\chimerax\crystal_contacts\crystalgui.py -> build\bdist.win-amd64\wheel\.\chimerax\crystal_contacts
19989copying build\lib\chimerax\crystal_contacts\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\crystal_contacts
19990running install_egg_info
19991running egg_info
19992creating ChimeraX_CrystalContacts.egg-info
19993writing ChimeraX_CrystalContacts.egg-info\PKG-INFO
19994writing dependency_links to ChimeraX_CrystalContacts.egg-info\dependency_links.txt
19995writing requirements to ChimeraX_CrystalContacts.egg-info\requires.txt
19996writing top-level names to ChimeraX_CrystalContacts.egg-info\top_level.txt
19997writing manifest file 'ChimeraX_CrystalContacts.egg-info\SOURCES.txt'
19998reading manifest file 'ChimeraX_CrystalContacts.egg-info\SOURCES.txt'
19999writing manifest file 'ChimeraX_CrystalContacts.egg-info\SOURCES.txt'
20000Copying ChimeraX_CrystalContacts.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_CrystalContacts-1.0.1-py3.11.egg-info
20001running install_scripts
20002creating build\bdist.win-amd64\wheel\chimerax_crystalcontacts-1.0.1.dist-info\WHEEL
20003creating 'dist\chimerax_crystalcontacts-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20004adding 'chimerax/crystal_contacts/__init__.py'
20005adding 'chimerax/crystal_contacts/crystal.py'
20006adding 'chimerax/crystal_contacts/crystalcmd.py'
20007adding 'chimerax/crystal_contacts/crystalgui.py'
20008adding 'chimerax_crystalcontacts-1.0.1.dist-info/METADATA'
20009adding 'chimerax_crystalcontacts-1.0.1.dist-info/WHEEL'
20010adding 'chimerax_crystalcontacts-1.0.1.dist-info/top_level.txt'
20011adding 'chimerax_crystalcontacts-1.0.1.dist-info/RECORD'
20012removing build\bdist.win-amd64\wheel
20013Distribution is in .\dist\ChimeraX_CrystalContacts-1.0.1-py3-none-any.whl
20014INFO:
20015
20016make sync
20017make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
20018cp -av dist/*.whl ../../../build/sync
20019'dist/chimerax_crystalcontacts-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_crystalcontacts-1.0.1-py3-none-any.whl'
20020make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
20021make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/crystal_contacts'
20022make -C data_formats build
20023make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
20024if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20025 echo "missing ChimeraX application's python"; exit 1; \
20026else \
20027 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20028fi
20029INFO:
20030Executing: devel build . exit true
20031C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20032!!
20033
20034 ********************************************************************************
20035 Please consider removing the following classifiers in favor of a SPDX license expression:
20036
20037 License :: Free for non-commercial use
20038
20039 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20040 ********************************************************************************
20041
20042!!
20043 self._finalize_license_expression()
20044running build
20045running build_py
20046creating build\lib\chimerax\data_formats
20047copying src\format.py -> build\lib\chimerax\data_formats
20048copying src\gui.py -> build\lib\chimerax\data_formats
20049copying src\manager.py -> build\lib\chimerax\data_formats
20050copying src\__init__.py -> build\lib\chimerax\data_formats
20051running bdist_wheel
20052installing to build\bdist.win-amd64\wheel
20053running install
20054running install_lib
20055creating build\bdist.win-amd64\wheel
20056creating build\bdist.win-amd64\wheel\chimerax
20057creating build\bdist.win-amd64\wheel\chimerax\data_formats
20058copying build\lib\chimerax\data_formats\format.py -> build\bdist.win-amd64\wheel\.\chimerax\data_formats
20059copying build\lib\chimerax\data_formats\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\data_formats
20060copying build\lib\chimerax\data_formats\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\data_formats
20061copying build\lib\chimerax\data_formats\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\data_formats
20062running install_egg_info
20063running egg_info
20064creating ChimeraX_DataFormats.egg-info
20065writing ChimeraX_DataFormats.egg-info\PKG-INFO
20066writing dependency_links to ChimeraX_DataFormats.egg-info\dependency_links.txt
20067writing requirements to ChimeraX_DataFormats.egg-info\requires.txt
20068writing top-level names to ChimeraX_DataFormats.egg-info\top_level.txt
20069writing manifest file 'ChimeraX_DataFormats.egg-info\SOURCES.txt'
20070reading manifest file 'ChimeraX_DataFormats.egg-info\SOURCES.txt'
20071writing manifest file 'ChimeraX_DataFormats.egg-info\SOURCES.txt'
20072Copying ChimeraX_DataFormats.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_DataFormats-1.2.4-py3.11.egg-info
20073running install_scripts
20074creating build\bdist.win-amd64\wheel\chimerax_dataformats-1.2.4.dist-info\WHEEL
20075creating 'dist\chimerax_dataformats-1.2.4-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20076adding 'chimerax/data_formats/__init__.py'
20077adding 'chimerax/data_formats/format.py'
20078adding 'chimerax/data_formats/gui.py'
20079adding 'chimerax/data_formats/manager.py'
20080adding 'chimerax_dataformats-1.2.4.dist-info/METADATA'
20081adding 'chimerax_dataformats-1.2.4.dist-info/WHEEL'
20082adding 'chimerax_dataformats-1.2.4.dist-info/top_level.txt'
20083adding 'chimerax_dataformats-1.2.4.dist-info/RECORD'
20084removing build\bdist.win-amd64\wheel
20085Distribution is in .\dist\ChimeraX_DataFormats-1.2.4-py3-none-any.whl
20086INFO:
20087
20088make sync
20089make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
20090cp -av dist/*.whl ../../../build/sync
20091'dist/chimerax_dataformats-1.2.4-py3-none-any.whl' -> '../../../build/sync/chimerax_dataformats-1.2.4-py3-none-any.whl'
20092make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
20093make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/data_formats'
20094make -C dicom build
20095make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
20096if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20097 echo "missing ChimeraX application's python"; exit 1; \
20098else \
20099 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20100fi
20101INFO:
20102Executing: devel build . exit true
20103C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
20104!!
20105
20106 ********************************************************************************
20107 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
20108
20109 By 2026-Feb-18, you need to update your project and remove deprecated calls
20110 or your builds will no longer be supported.
20111
20112 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20113 ********************************************************************************
20114
20115!!
20116 corresp(dist, value, root_dir)
20117running build
20118running build_py
20119creating build\lib\chimerax\dicom
20120copying src\coordinates.py -> build\lib\chimerax\dicom
20121copying src\dicom.py -> build\lib\chimerax\dicom
20122copying src\dicom_fetcher.py -> build\lib\chimerax\dicom
20123copying src\dicom_hierarchy.py -> build\lib\chimerax\dicom
20124copying src\dicom_models.py -> build\lib\chimerax\dicom
20125copying src\dicom_opener.py -> build\lib\chimerax\dicom
20126copying src\dicom_saver.py -> build\lib\chimerax\dicom
20127copying src\dicom_volumes.py -> build\lib\chimerax\dicom
20128copying src\errors.py -> build\lib\chimerax\dicom
20129copying src\modality.py -> build\lib\chimerax\dicom
20130copying src\types.py -> build\lib\chimerax\dicom
20131copying src\__init__.py -> build\lib\chimerax\dicom
20132creating build\lib\chimerax\dicom\databases
20133copying src\databases\tcia.py -> build\lib\chimerax\dicom\databases
20134copying src\databases\__init__.py -> build\lib\chimerax\dicom\databases
20135creating build\lib\chimerax\dicom\ui
20136copying src\ui\dicom_browser.py -> build\lib\chimerax\dicom\ui
20137copying src\ui\dicom_databases.py -> build\lib\chimerax\dicom\ui
20138copying src\ui\metadata_tool.py -> build\lib\chimerax\dicom\ui
20139copying src\ui\__init__.py -> build\lib\chimerax\dicom\ui
20140creating build\lib\chimerax\dicom\ui\widgets
20141copying src\ui\widgets\table.py -> build\lib\chimerax\dicom\ui\widgets
20142copying src\ui\widgets\__init__.py -> build\lib\chimerax\dicom\ui\widgets
20143running bdist_wheel
20144installing to build\bdist.win-amd64\wheel
20145running install
20146running install_lib
20147creating build\bdist.win-amd64\wheel
20148creating build\bdist.win-amd64\wheel\chimerax
20149creating build\bdist.win-amd64\wheel\chimerax\dicom
20150copying build\lib\chimerax\dicom\coordinates.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20151creating build\bdist.win-amd64\wheel\chimerax\dicom\databases
20152copying build\lib\chimerax\dicom\databases\tcia.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\databases
20153copying build\lib\chimerax\dicom\databases\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\databases
20154copying build\lib\chimerax\dicom\dicom.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20155copying build\lib\chimerax\dicom\dicom_fetcher.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20156copying build\lib\chimerax\dicom\dicom_hierarchy.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20157copying build\lib\chimerax\dicom\dicom_models.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20158copying build\lib\chimerax\dicom\dicom_opener.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20159copying build\lib\chimerax\dicom\dicom_saver.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20160copying build\lib\chimerax\dicom\dicom_volumes.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20161copying build\lib\chimerax\dicom\errors.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20162copying build\lib\chimerax\dicom\modality.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20163copying build\lib\chimerax\dicom\types.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20164creating build\bdist.win-amd64\wheel\chimerax\dicom\ui
20165copying build\lib\chimerax\dicom\ui\dicom_browser.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\ui
20166copying build\lib\chimerax\dicom\ui\dicom_databases.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\ui
20167copying build\lib\chimerax\dicom\ui\metadata_tool.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\ui
20168creating build\bdist.win-amd64\wheel\chimerax\dicom\ui\widgets
20169copying build\lib\chimerax\dicom\ui\widgets\table.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\ui\widgets
20170copying build\lib\chimerax\dicom\ui\widgets\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\ui\widgets
20171copying build\lib\chimerax\dicom\ui\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom\ui
20172copying build\lib\chimerax\dicom\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dicom
20173running install_egg_info
20174running egg_info
20175creating ChimeraX_Dicom.egg-info
20176writing ChimeraX_Dicom.egg-info\PKG-INFO
20177writing dependency_links to ChimeraX_Dicom.egg-info\dependency_links.txt
20178writing requirements to ChimeraX_Dicom.egg-info\requires.txt
20179writing top-level names to ChimeraX_Dicom.egg-info\top_level.txt
20180writing manifest file 'ChimeraX_Dicom.egg-info\SOURCES.txt'
20181reading manifest file 'ChimeraX_Dicom.egg-info\SOURCES.txt'
20182writing manifest file 'ChimeraX_Dicom.egg-info\SOURCES.txt'
20183Copying ChimeraX_Dicom.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Dicom-1.2.7-py3.11.egg-info
20184running install_scripts
20185creating build\bdist.win-amd64\wheel\chimerax_dicom-1.2.7.dist-info\WHEEL
20186creating 'dist\chimerax_dicom-1.2.7-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20187adding 'chimerax/dicom/__init__.py'
20188adding 'chimerax/dicom/coordinates.py'
20189adding 'chimerax/dicom/dicom.py'
20190adding 'chimerax/dicom/dicom_fetcher.py'
20191adding 'chimerax/dicom/dicom_hierarchy.py'
20192adding 'chimerax/dicom/dicom_models.py'
20193adding 'chimerax/dicom/dicom_opener.py'
20194adding 'chimerax/dicom/dicom_saver.py'
20195adding 'chimerax/dicom/dicom_volumes.py'
20196adding 'chimerax/dicom/errors.py'
20197adding 'chimerax/dicom/modality.py'
20198adding 'chimerax/dicom/types.py'
20199adding 'chimerax/dicom/databases/__init__.py'
20200adding 'chimerax/dicom/databases/tcia.py'
20201adding 'chimerax/dicom/ui/__init__.py'
20202adding 'chimerax/dicom/ui/dicom_browser.py'
20203adding 'chimerax/dicom/ui/dicom_databases.py'
20204adding 'chimerax/dicom/ui/metadata_tool.py'
20205adding 'chimerax/dicom/ui/widgets/__init__.py'
20206adding 'chimerax/dicom/ui/widgets/table.py'
20207adding 'chimerax_dicom-1.2.7.dist-info/METADATA'
20208adding 'chimerax_dicom-1.2.7.dist-info/WHEEL'
20209adding 'chimerax_dicom-1.2.7.dist-info/top_level.txt'
20210adding 'chimerax_dicom-1.2.7.dist-info/RECORD'
20211removing build\bdist.win-amd64\wheel
20212Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\dicom\dist\chimerax_dicom-1.2.7-py3-none-any.whl
20213INFO:
20214
20215make sync
20216make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
20217cp -av dist/*.whl ../../../build/sync
20218'dist/chimerax_dicom-1.2.7-py3-none-any.whl' -> '../../../build/sync/chimerax_dicom-1.2.7-py3-none-any.whl'
20219make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
20220make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dicom'
20221make -C dist_monitor build
20222make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
20223if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20224 echo "missing ChimeraX application's python"; exit 1; \
20225else \
20226 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20227fi
20228INFO:
20229Executing: devel build . exit true
20230C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20231!!
20232
20233 ********************************************************************************
20234 Please consider removing the following classifiers in favor of a SPDX license expression:
20235
20236 License :: Free for non-commercial use
20237
20238 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20239 ********************************************************************************
20240
20241!!
20242 self._finalize_license_expression()
20243running build
20244running build_py
20245creating build\lib\chimerax\dist_monitor
20246copying src\cmd.py -> build\lib\chimerax\dist_monitor
20247copying src\monitor.py -> build\lib\chimerax\dist_monitor
20248copying src\settings.py -> build\lib\chimerax\dist_monitor
20249copying src\__init__.py -> build\lib\chimerax\dist_monitor
20250running bdist_wheel
20251installing to build\bdist.win-amd64\wheel
20252running install
20253running install_lib
20254creating build\bdist.win-amd64\wheel
20255creating build\bdist.win-amd64\wheel\chimerax
20256creating build\bdist.win-amd64\wheel\chimerax\dist_monitor
20257copying build\lib\chimerax\dist_monitor\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\dist_monitor
20258copying build\lib\chimerax\dist_monitor\monitor.py -> build\bdist.win-amd64\wheel\.\chimerax\dist_monitor
20259copying build\lib\chimerax\dist_monitor\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\dist_monitor
20260copying build\lib\chimerax\dist_monitor\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dist_monitor
20261running install_egg_info
20262running egg_info
20263creating ChimeraX_DistMonitor.egg-info
20264writing ChimeraX_DistMonitor.egg-info\PKG-INFO
20265writing dependency_links to ChimeraX_DistMonitor.egg-info\dependency_links.txt
20266writing requirements to ChimeraX_DistMonitor.egg-info\requires.txt
20267writing top-level names to ChimeraX_DistMonitor.egg-info\top_level.txt
20268writing manifest file 'ChimeraX_DistMonitor.egg-info\SOURCES.txt'
20269reading manifest file 'ChimeraX_DistMonitor.egg-info\SOURCES.txt'
20270writing manifest file 'ChimeraX_DistMonitor.egg-info\SOURCES.txt'
20271Copying ChimeraX_DistMonitor.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_DistMonitor-1.4.2-py3.11.egg-info
20272running install_scripts
20273creating build\bdist.win-amd64\wheel\chimerax_distmonitor-1.4.2.dist-info\WHEEL
20274creating 'dist\chimerax_distmonitor-1.4.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20275adding 'chimerax/dist_monitor/__init__.py'
20276adding 'chimerax/dist_monitor/cmd.py'
20277adding 'chimerax/dist_monitor/monitor.py'
20278adding 'chimerax/dist_monitor/settings.py'
20279adding 'chimerax_distmonitor-1.4.2.dist-info/METADATA'
20280adding 'chimerax_distmonitor-1.4.2.dist-info/WHEEL'
20281adding 'chimerax_distmonitor-1.4.2.dist-info/top_level.txt'
20282adding 'chimerax_distmonitor-1.4.2.dist-info/RECORD'
20283removing build\bdist.win-amd64\wheel
20284Distribution is in .\dist\ChimeraX_DistMonitor-1.4.2-py3-none-any.whl
20285INFO:
20286
20287make sync
20288make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
20289cp -av dist/*.whl ../../../build/sync
20290'dist/chimerax_distmonitor-1.4.2-py3-none-any.whl' -> '../../../build/sync/chimerax_distmonitor-1.4.2-py3-none-any.whl'
20291make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
20292make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dist_monitor'
20293make -C dock_prep build
20294make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
20295if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20296 echo "missing ChimeraX application's python"; exit 1; \
20297else \
20298 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20299fi
20300INFO:
20301Executing: devel build . exit true
20302C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20303!!
20304
20305 ********************************************************************************
20306 Please consider removing the following classifiers in favor of a SPDX license expression:
20307
20308 License :: Free for non-commercial use
20309
20310 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20311 ********************************************************************************
20312
20313!!
20314 self._finalize_license_expression()
20315running build
20316running build_py
20317creating build\lib\chimerax\dock_prep
20318copying src\cmd.py -> build\lib\chimerax\dock_prep
20319copying src\prep.py -> build\lib\chimerax\dock_prep
20320copying src\settings.py -> build\lib\chimerax\dock_prep
20321copying src\tool.py -> build\lib\chimerax\dock_prep
20322copying src\__init__.py -> build\lib\chimerax\dock_prep
20323running bdist_wheel
20324installing to build\bdist.win-amd64\wheel
20325running install
20326running install_lib
20327creating build\bdist.win-amd64\wheel
20328creating build\bdist.win-amd64\wheel\chimerax
20329creating build\bdist.win-amd64\wheel\chimerax\dock_prep
20330copying build\lib\chimerax\dock_prep\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\dock_prep
20331copying build\lib\chimerax\dock_prep\prep.py -> build\bdist.win-amd64\wheel\.\chimerax\dock_prep
20332copying build\lib\chimerax\dock_prep\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\dock_prep
20333copying build\lib\chimerax\dock_prep\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\dock_prep
20334copying build\lib\chimerax\dock_prep\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dock_prep
20335running install_egg_info
20336running egg_info
20337creating ChimeraX_DockPrep.egg-info
20338writing ChimeraX_DockPrep.egg-info\PKG-INFO
20339writing dependency_links to ChimeraX_DockPrep.egg-info\dependency_links.txt
20340writing requirements to ChimeraX_DockPrep.egg-info\requires.txt
20341writing top-level names to ChimeraX_DockPrep.egg-info\top_level.txt
20342writing manifest file 'ChimeraX_DockPrep.egg-info\SOURCES.txt'
20343reading manifest file 'ChimeraX_DockPrep.egg-info\SOURCES.txt'
20344writing manifest file 'ChimeraX_DockPrep.egg-info\SOURCES.txt'
20345Copying ChimeraX_DockPrep.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_DockPrep-1.1.4-py3.11.egg-info
20346running install_scripts
20347creating build\bdist.win-amd64\wheel\chimerax_dockprep-1.1.4.dist-info\WHEEL
20348creating 'dist\chimerax_dockprep-1.1.4-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20349adding 'chimerax/dock_prep/__init__.py'
20350adding 'chimerax/dock_prep/cmd.py'
20351adding 'chimerax/dock_prep/prep.py'
20352adding 'chimerax/dock_prep/settings.py'
20353adding 'chimerax/dock_prep/tool.py'
20354adding 'chimerax_dockprep-1.1.4.dist-info/METADATA'
20355adding 'chimerax_dockprep-1.1.4.dist-info/WHEEL'
20356adding 'chimerax_dockprep-1.1.4.dist-info/top_level.txt'
20357adding 'chimerax_dockprep-1.1.4.dist-info/RECORD'
20358removing build\bdist.win-amd64\wheel
20359Distribution is in .\dist\ChimeraX_DockPrep-1.1.4-py3-none-any.whl
20360INFO:
20361
20362make sync
20363make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
20364cp -av dist/*.whl ../../../build/sync
20365'dist/chimerax_dockprep-1.1.4-py3-none-any.whl' -> '../../../build/sync/chimerax_dockprep-1.1.4-py3-none-any.whl'
20366make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
20367make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dock_prep'
20368make -C dssp build
20369make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
20370if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20371 echo "missing ChimeraX application's python"; exit 1; \
20372else \
20373 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20374fi
20375INFO:
20376Executing: devel build . exit true
20377C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20378!!
20379
20380 ********************************************************************************
20381 Please consider removing the following classifiers in favor of a SPDX license expression:
20382
20383 License :: Free for non-commercial use
20384
20385 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20386 ********************************************************************************
20387
20388!!
20389 self._finalize_license_expression()
20390running build
20391running build_py
20392creating build\lib.win-amd64-cpython-311\chimerax\dssp
20393copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\dssp
20394running build_ext
20395building 'chimerax.dssp._dssp' extension
20396creating build\temp.win-amd64-cpython-311\Release\dssp_cpp
20397"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpdssp_cpp/dssp.cpp /Fobuild\temp.win-amd64-cpython-311\Release\dssp_cpp\dssp.obj
20398dssp.cpp
20399C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
20400c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20401C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
20402C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
20403c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20404C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
20405C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
20406C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
20407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
20408C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
20409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
20410C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
20411C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
20412C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20413C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
20414C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
20415C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
20416C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
20417C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
20418C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
20419C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
20420C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
20422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
20424C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20425C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
20426C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20427C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
20428C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20429c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20430C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20431c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20432C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20433c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20434C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20435c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20436C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20437c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20438C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20439c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20440C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20441c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20442C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20443c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20444C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20445c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20446C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20447c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20448C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20449c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20450C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20451c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20453c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20454C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20455c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20456C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20457c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20458C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20459c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20460C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20461c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20462C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20463c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20464C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20465c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20466C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20467c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20468C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20469c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20470C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20471c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20472C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20473c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20474C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20475c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20476C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20477c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20478C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20479c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20480C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20481c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20482C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20483c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20484C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20485c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20486C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20487c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20488C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20489c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20490C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20491c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20492C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20493c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20494C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20495c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20496C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20497c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20499c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20500C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20501c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20502C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20503c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20504C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20505c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20506C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20507c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20508C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20509c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20510C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
20511c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20512C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
20513C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
20514C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
20515C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
20516C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
20517c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20518C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
20519C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20520C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
20521C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20522C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
20523C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20524C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
20525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20526C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
20527C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20528C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
20529C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20530C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
20531C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20532C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
20533C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
20534c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20535C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
20536C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
20537c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20538C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
20539c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20540C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
20541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
20542C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
20543C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
20544C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
20545C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
20546C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
20547C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
20548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
20549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
20550C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
20551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
20552C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
20553C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
20554c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20555C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
20556C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
20557C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
20558C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
20559c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20560C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
20561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
20562C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
20563C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
20564C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
20565C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
20566c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20567C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
20568C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20569C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
20570C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20571C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
20572C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20573C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
20574C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20575C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
20576C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20577C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
20578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20579C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
20580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20581C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
20582C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20583c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20584C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
20585C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
20586C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
20587c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20588C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
20589C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
20590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
20591C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
20592C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
20593C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
20594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
20595C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
20596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
20597C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
20598c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20599C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
20600C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
20601C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
20602C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
20603C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
20604C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
20605C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
20606C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
20607C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
20608C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
20609c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20610C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
20611C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
20612C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
20613C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
20614C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
20615C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
20616C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
20617C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
20618c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20619C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
20620C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20621C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
20622C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20623c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20624C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20625c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20626C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20627c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20628C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20629C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20630C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20631C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
20632C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20633C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20634C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20635C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20636C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20637C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20638C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20639C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20640C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20641C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
20642C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20643C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20644C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20645C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20646C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20647C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20648C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20649C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20651C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20652C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20653C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
20654C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
20655C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
20656C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
20657C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
20658c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
20659C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
20660C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
20661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
20662C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
20663"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib libpyinstance.lib libarrays.lib liblogger.lib /EXPORT:PyInit__dssp build\temp.win-amd64-cpython-311\Release\dssp_cpp\dssp.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\dssp\_dssp.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\dssp_cpp\_dssp.cp311-win_amd64.lib
20664 Creating library build\temp.win-amd64-cpython-311\Release\dssp_cpp\_dssp.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\dssp_cpp\_dssp.cp311-win_amd64.exp
20665Generating code
20666Finished generating code
20667running bdist_wheel
20668installing to build\bdist.win-amd64\wheel
20669running install
20670running install_lib
20671running build_ext
20672creating build\bdist.win-amd64\wheel
20673creating build\bdist.win-amd64\wheel\chimerax
20674creating build\bdist.win-amd64\wheel\chimerax\dssp
20675copying build\lib.win-amd64-cpython-311\chimerax\dssp\_dssp.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\dssp
20676copying build\lib.win-amd64-cpython-311\chimerax\dssp\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dssp
20677running install_egg_info
20678running egg_info
20679creating ChimeraX_Dssp.egg-info
20680writing ChimeraX_Dssp.egg-info\PKG-INFO
20681writing dependency_links to ChimeraX_Dssp.egg-info\dependency_links.txt
20682writing requirements to ChimeraX_Dssp.egg-info\requires.txt
20683writing top-level names to ChimeraX_Dssp.egg-info\top_level.txt
20684writing manifest file 'ChimeraX_Dssp.egg-info\SOURCES.txt'
20685reading manifest file 'ChimeraX_Dssp.egg-info\SOURCES.txt'
20686writing manifest file 'ChimeraX_Dssp.egg-info\SOURCES.txt'
20687Copying ChimeraX_Dssp.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Dssp-2.0-py3.11.egg-info
20688running install_scripts
20689C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
20690 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
20691creating build\bdist.win-amd64\wheel\chimerax_dssp-2.0.dist-info\WHEEL
20692creating 'dist\chimerax_dssp-2.0-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
20693adding 'chimerax/dssp/__init__.py'
20694adding 'chimerax/dssp/_dssp.cp311-win_amd64.pyd'
20695adding 'chimerax_dssp-2.0.dist-info/METADATA'
20696adding 'chimerax_dssp-2.0.dist-info/WHEEL'
20697adding 'chimerax_dssp-2.0.dist-info/top_level.txt'
20698adding 'chimerax_dssp-2.0.dist-info/RECORD'
20699removing build\bdist.win-amd64\wheel
20700Distribution is in .\dist\ChimeraX_Dssp-2.0-cp311-cp311-win_amd64.whl
20701INFO:
20702
20703make sync
20704make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
20705cp -av dist/*.whl ../../../build/sync
20706'dist/chimerax_dssp-2.0-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_dssp-2.0-cp311-cp311-win_amd64.whl'
20707make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
20708make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/dssp'
20709make -C emdb_sff build
20710make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
20711if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20712 echo "missing ChimeraX application's python"; exit 1; \
20713else \
20714 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20715fi
20716INFO:
20717Executing: devel build . exit true
20718C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20719!!
20720
20721 ********************************************************************************
20722 Please consider removing the following classifiers in favor of a SPDX license expression:
20723
20724 License :: Free for non-commercial use
20725
20726 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20727 ********************************************************************************
20728
20729!!
20730 self._finalize_license_expression()
20731running build
20732running build_py
20733creating build\lib\chimerax\emdb_sff
20734copying src\sff.py -> build\lib\chimerax\emdb_sff
20735copying src\__init__.py -> build\lib\chimerax\emdb_sff
20736running bdist_wheel
20737installing to build\bdist.win-amd64\wheel
20738running install
20739running install_lib
20740creating build\bdist.win-amd64\wheel
20741creating build\bdist.win-amd64\wheel\chimerax
20742creating build\bdist.win-amd64\wheel\chimerax\emdb_sff
20743copying build\lib\chimerax\emdb_sff\sff.py -> build\bdist.win-amd64\wheel\.\chimerax\emdb_sff
20744copying build\lib\chimerax\emdb_sff\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\emdb_sff
20745running install_egg_info
20746running egg_info
20747creating ChimeraX_EMDB_SFF.egg-info
20748writing ChimeraX_EMDB_SFF.egg-info\PKG-INFO
20749writing dependency_links to ChimeraX_EMDB_SFF.egg-info\dependency_links.txt
20750writing requirements to ChimeraX_EMDB_SFF.egg-info\requires.txt
20751writing top-level names to ChimeraX_EMDB_SFF.egg-info\top_level.txt
20752writing manifest file 'ChimeraX_EMDB_SFF.egg-info\SOURCES.txt'
20753reading manifest file 'ChimeraX_EMDB_SFF.egg-info\SOURCES.txt'
20754writing manifest file 'ChimeraX_EMDB_SFF.egg-info\SOURCES.txt'
20755Copying ChimeraX_EMDB_SFF.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_EMDB_SFF-1.0-py3.11.egg-info
20756running install_scripts
20757creating build\bdist.win-amd64\wheel\chimerax_emdb_sff-1.0.dist-info\WHEEL
20758creating 'dist\chimerax_emdb_sff-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20759adding 'chimerax/emdb_sff/__init__.py'
20760adding 'chimerax/emdb_sff/sff.py'
20761adding 'chimerax_emdb_sff-1.0.dist-info/METADATA'
20762adding 'chimerax_emdb_sff-1.0.dist-info/WHEEL'
20763adding 'chimerax_emdb_sff-1.0.dist-info/top_level.txt'
20764adding 'chimerax_emdb_sff-1.0.dist-info/RECORD'
20765removing build\bdist.win-amd64\wheel
20766Distribution is in .\dist\ChimeraX_EMDB_SFF-1.0-py3-none-any.whl
20767INFO:
20768
20769make sync
20770make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
20771cp -av dist/*.whl ../../../build/sync
20772'dist/chimerax_emdb_sff-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_emdb_sff-1.0-py3-none-any.whl'
20773make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
20774make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/emdb_sff'
20775make -C esmfold build
20776make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
20777if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20778 echo "missing ChimeraX application's python"; exit 1; \
20779else \
20780 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20781fi
20782INFO:
20783Executing: devel build . exit true
20784C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20785!!
20786
20787 ********************************************************************************
20788 Please consider removing the following classifiers in favor of a SPDX license expression:
20789
20790 License :: Free for non-commercial use
20791
20792 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20793 ********************************************************************************
20794
20795!!
20796 self._finalize_license_expression()
20797running build
20798running build_py
20799creating build\lib\chimerax\esmfold
20800copying src\blast.py -> build\lib\chimerax\esmfold
20801copying src\contacts.py -> build\lib\chimerax\esmfold
20802copying src\database.py -> build\lib\chimerax\esmfold
20803copying src\esmfold_search_cgi.py -> build\lib\chimerax\esmfold
20804copying src\fetch.py -> build\lib\chimerax\esmfold
20805copying src\match.py -> build\lib\chimerax\esmfold
20806copying src\pae.py -> build\lib\chimerax\esmfold
20807copying src\panel.py -> build\lib\chimerax\esmfold
20808copying src\predict.py -> build\lib\chimerax\esmfold
20809copying src\search.py -> build\lib\chimerax\esmfold
20810copying src\__init__.py -> build\lib\chimerax\esmfold
20811running bdist_wheel
20812installing to build\bdist.win-amd64\wheel
20813running install
20814running install_lib
20815creating build\bdist.win-amd64\wheel
20816creating build\bdist.win-amd64\wheel\chimerax
20817creating build\bdist.win-amd64\wheel\chimerax\esmfold
20818copying build\lib\chimerax\esmfold\blast.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20819copying build\lib\chimerax\esmfold\contacts.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20820copying build\lib\chimerax\esmfold\database.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20821copying build\lib\chimerax\esmfold\esmfold_search_cgi.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20822copying build\lib\chimerax\esmfold\fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20823copying build\lib\chimerax\esmfold\match.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20824copying build\lib\chimerax\esmfold\pae.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20825copying build\lib\chimerax\esmfold\panel.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20826copying build\lib\chimerax\esmfold\predict.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20827copying build\lib\chimerax\esmfold\search.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20828copying build\lib\chimerax\esmfold\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\esmfold
20829running install_egg_info
20830running egg_info
20831creating ChimeraX_ESMFold.egg-info
20832writing ChimeraX_ESMFold.egg-info\PKG-INFO
20833writing dependency_links to ChimeraX_ESMFold.egg-info\dependency_links.txt
20834writing requirements to ChimeraX_ESMFold.egg-info\requires.txt
20835writing top-level names to ChimeraX_ESMFold.egg-info\top_level.txt
20836writing manifest file 'ChimeraX_ESMFold.egg-info\SOURCES.txt'
20837reading manifest file 'ChimeraX_ESMFold.egg-info\SOURCES.txt'
20838writing manifest file 'ChimeraX_ESMFold.egg-info\SOURCES.txt'
20839Copying ChimeraX_ESMFold.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ESMFold-1.0-py3.11.egg-info
20840running install_scripts
20841creating build\bdist.win-amd64\wheel\chimerax_esmfold-1.0.dist-info\WHEEL
20842creating 'dist\chimerax_esmfold-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20843adding 'chimerax/esmfold/__init__.py'
20844adding 'chimerax/esmfold/blast.py'
20845adding 'chimerax/esmfold/contacts.py'
20846adding 'chimerax/esmfold/database.py'
20847adding 'chimerax/esmfold/esmfold_search_cgi.py'
20848adding 'chimerax/esmfold/fetch.py'
20849adding 'chimerax/esmfold/match.py'
20850adding 'chimerax/esmfold/pae.py'
20851adding 'chimerax/esmfold/panel.py'
20852adding 'chimerax/esmfold/predict.py'
20853adding 'chimerax/esmfold/search.py'
20854adding 'chimerax_esmfold-1.0.dist-info/METADATA'
20855adding 'chimerax_esmfold-1.0.dist-info/WHEEL'
20856adding 'chimerax_esmfold-1.0.dist-info/top_level.txt'
20857adding 'chimerax_esmfold-1.0.dist-info/RECORD'
20858removing build\bdist.win-amd64\wheel
20859Distribution is in .\dist\ChimeraX_ESMFold-1.0-py3-none-any.whl
20860INFO:
20861
20862make sync
20863make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
20864cp -av dist/*.whl ../../../build/sync
20865'dist/chimerax_esmfold-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_esmfold-1.0-py3-none-any.whl'
20866make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
20867make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/esmfold'
20868make -C file_history build
20869make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
20870if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20871 echo "missing ChimeraX application's python"; exit 1; \
20872else \
20873 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20874fi
20875INFO:
20876Executing: devel build . exit true
20877C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20878!!
20879
20880 ********************************************************************************
20881 Please consider removing the following classifiers in favor of a SPDX license expression:
20882
20883 License :: Free for non-commercial use
20884
20885 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20886 ********************************************************************************
20887
20888!!
20889 self._finalize_license_expression()
20890running build
20891running build_py
20892creating build\lib\chimerax\file_history
20893copying src\tool.py -> build\lib\chimerax\file_history
20894copying src\__init__.py -> build\lib\chimerax\file_history
20895running bdist_wheel
20896installing to build\bdist.win-amd64\wheel
20897running install
20898running install_lib
20899creating build\bdist.win-amd64\wheel
20900creating build\bdist.win-amd64\wheel\chimerax
20901creating build\bdist.win-amd64\wheel\chimerax\file_history
20902copying build\lib\chimerax\file_history\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\file_history
20903copying build\lib\chimerax\file_history\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\file_history
20904running install_egg_info
20905running egg_info
20906creating ChimeraX_FileHistory.egg-info
20907writing ChimeraX_FileHistory.egg-info\PKG-INFO
20908writing dependency_links to ChimeraX_FileHistory.egg-info\dependency_links.txt
20909writing requirements to ChimeraX_FileHistory.egg-info\requires.txt
20910writing top-level names to ChimeraX_FileHistory.egg-info\top_level.txt
20911writing manifest file 'ChimeraX_FileHistory.egg-info\SOURCES.txt'
20912reading manifest file 'ChimeraX_FileHistory.egg-info\SOURCES.txt'
20913writing manifest file 'ChimeraX_FileHistory.egg-info\SOURCES.txt'
20914Copying ChimeraX_FileHistory.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_FileHistory-1.0.1-py3.11.egg-info
20915running install_scripts
20916creating build\bdist.win-amd64\wheel\chimerax_filehistory-1.0.1.dist-info\WHEEL
20917creating 'dist\chimerax_filehistory-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20918adding 'chimerax/file_history/__init__.py'
20919adding 'chimerax/file_history/tool.py'
20920adding 'chimerax_filehistory-1.0.1.dist-info/METADATA'
20921adding 'chimerax_filehistory-1.0.1.dist-info/WHEEL'
20922adding 'chimerax_filehistory-1.0.1.dist-info/top_level.txt'
20923adding 'chimerax_filehistory-1.0.1.dist-info/RECORD'
20924removing build\bdist.win-amd64\wheel
20925Distribution is in .\dist\ChimeraX_FileHistory-1.0.1-py3-none-any.whl
20926INFO:
20927
20928make sync
20929make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
20930cp -av dist/*.whl ../../../build/sync
20931'dist/chimerax_filehistory-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_filehistory-1.0.1-py3-none-any.whl'
20932make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
20933make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/file_history'
20934make -C function_key build
20935make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
20936if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
20937 echo "missing ChimeraX application's python"; exit 1; \
20938else \
20939 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
20940fi
20941INFO:
20942Executing: devel build . exit true
20943C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
20944!!
20945
20946 ********************************************************************************
20947 Please consider removing the following classifiers in favor of a SPDX license expression:
20948
20949 License :: Free for non-commercial use
20950
20951 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
20952 ********************************************************************************
20953
20954!!
20955 self._finalize_license_expression()
20956running build
20957running build_py
20958creating build\lib\chimerax\function_key
20959copying src\fkey.py -> build\lib\chimerax\function_key
20960copying src\__init__.py -> build\lib\chimerax\function_key
20961running bdist_wheel
20962installing to build\bdist.win-amd64\wheel
20963running install
20964running install_lib
20965creating build\bdist.win-amd64\wheel
20966creating build\bdist.win-amd64\wheel\chimerax
20967creating build\bdist.win-amd64\wheel\chimerax\function_key
20968copying build\lib\chimerax\function_key\fkey.py -> build\bdist.win-amd64\wheel\.\chimerax\function_key
20969copying build\lib\chimerax\function_key\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\function_key
20970running install_egg_info
20971running egg_info
20972creating ChimeraX_FunctionKey.egg-info
20973writing ChimeraX_FunctionKey.egg-info\PKG-INFO
20974writing dependency_links to ChimeraX_FunctionKey.egg-info\dependency_links.txt
20975writing requirements to ChimeraX_FunctionKey.egg-info\requires.txt
20976writing top-level names to ChimeraX_FunctionKey.egg-info\top_level.txt
20977writing manifest file 'ChimeraX_FunctionKey.egg-info\SOURCES.txt'
20978reading manifest file 'ChimeraX_FunctionKey.egg-info\SOURCES.txt'
20979writing manifest file 'ChimeraX_FunctionKey.egg-info\SOURCES.txt'
20980Copying ChimeraX_FunctionKey.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_FunctionKey-1.0.1-py3.11.egg-info
20981running install_scripts
20982creating build\bdist.win-amd64\wheel\chimerax_functionkey-1.0.1.dist-info\WHEEL
20983creating 'dist\chimerax_functionkey-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
20984adding 'chimerax/function_key/__init__.py'
20985adding 'chimerax/function_key/fkey.py'
20986adding 'chimerax_functionkey-1.0.1.dist-info/METADATA'
20987adding 'chimerax_functionkey-1.0.1.dist-info/WHEEL'
20988adding 'chimerax_functionkey-1.0.1.dist-info/top_level.txt'
20989adding 'chimerax_functionkey-1.0.1.dist-info/RECORD'
20990removing build\bdist.win-amd64\wheel
20991Distribution is in .\dist\ChimeraX_FunctionKey-1.0.1-py3-none-any.whl
20992INFO:
20993
20994make sync
20995make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
20996cp -av dist/*.whl ../../../build/sync
20997'dist/chimerax_functionkey-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_functionkey-1.0.1-py3-none-any.whl'
20998make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
20999make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/function_key'
21000make -C geometry build
21001make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
21002if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21003 echo "missing ChimeraX application's python"; exit 1; \
21004else \
21005 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel install . user false exit true noDeps true"; \
21006fi
21007INFO:
21008Executing: devel install . user false exit true noDeps true
21009C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21010!!
21011
21012 ********************************************************************************
21013 Please consider removing the following classifiers in favor of a SPDX license expression:
21014
21015 License :: Free for non-commercial use
21016
21017 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21018 ********************************************************************************
21019
21020!!
21021 self._finalize_license_expression()
21022running build
21023running build_py
21024creating build\lib.win-amd64-cpython-311\chimerax\geometry
21025copying src\adaptive_tree.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21026copying src\align.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21027copying src\bins.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21028copying src\bounds.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21029copying src\icosahedron.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21030copying src\matrix.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21031copying src\place.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21032copying src\plane.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21033copying src\psession.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21034copying src\sphere.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21035copying src\spline.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21036copying src\symmetry.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21037copying src\vector.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21038copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\geometry
21039running build_ext
21040building 'chimerax.geometry._geometry' extension
21041creating build\temp.win-amd64-cpython-311\Release\_geometry
21042"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/bounds.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\bounds.obj
21043bounds.cpp
21044"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/closepoints.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\closepoints.obj
21045closepoints.cpp
21046_geometry/closepoints.cpp(736): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21047_geometry/closepoints.cpp(879): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21048_geometry/closepoints.cpp(1069): warning C4244: 'argument': conversion from 'Index' to 'const int', possible loss of data
21049_geometry/closepoints.cpp(1070): warning C4244: 'argument': conversion from 'Index' to 'int', possible loss of data
21050_geometry/closepoints.cpp(1071): warning C4244: 'argument': conversion from 'Index' to 'const int', possible loss of data
21051_geometry/closepoints.cpp(1072): warning C4244: 'argument': conversion from 'Index' to 'int', possible loss of data
21052_geometry/closepoints.cpp(1073): warning C4244: 'argument': conversion from 'Index' to 'int', possible loss of data
21053_geometry/closepoints.cpp(1073): warning C4244: 'argument': conversion from 'Index' to 'int', possible loss of data
21054c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\utility(186): warning C4244: 'initializing': conversion from 'const _Ty' to '_Ty2', possible loss of data
21055 with
21056 [
21057 _Ty=int64_t
21058 ]
21059 and
21060 [
21061 _Ty2=int
21062 ]
21063_geometry/closepoints.cpp(1134): note: see reference to function template instantiation 'std::pair<const float *,int>::pair<const float*const &,const Index&,0>(_Other1,_Other2) noexcept' being compiled
21064 with
21065 [
21066 _Other1=const float *const &,
21067 _Other2=const Index &
21068 ]
21069_geometry/closepoints.cpp(1134): note: see reference to function template instantiation 'std::pair<const float *,int>::pair<const float*const &,const Index&,0>(_Other1,_Other2) noexcept' being compiled
21070 with
21071 [
21072 _Other1=const float *const &,
21073 _Other2=const Index &
21074 ]
21075"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/cylinderrot.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\cylinderrot.obj
21076cylinderrot.cpp
21077_geometry/cylinderrot.cpp(63): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21078_geometry/cylinderrot.cpp(118): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
21079_geometry/cylinderrot.cpp(148): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21080_geometry/cylinderrot.cpp(166): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21081_geometry/cylinderrot.cpp(167): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21082_geometry/cylinderrot.cpp(168): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21083_geometry/cylinderrot.cpp(171): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21084_geometry/cylinderrot.cpp(172): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21085_geometry/cylinderrot.cpp(173): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21086_geometry/cylinderrot.cpp(266): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21087"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/distances.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\distances.obj
21088distances.cpp
21089_geometry/distances.cpp(108): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21090"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/distancespy.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\distancespy.obj
21091distancespy.cpp
21092_geometry/distancespy.cpp(57): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
21093_geometry/distancespy.cpp(83): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
21094_geometry/distancespy.cpp(109): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
21095_geometry/distancespy.cpp(134): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
21096"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/fill_ring.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\fill_ring.obj
21097fill_ring.cpp
21098_geometry/fill_ring.cpp(134): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
21099 with
21100 [
21101 _Ty=int
21102 ]
21103_geometry/fill_ring.cpp(135): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
21104 with
21105 [
21106 _Ty=int
21107 ]
21108_geometry/fill_ring.cpp(136): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
21109 with
21110 [
21111 _Ty=int
21112 ]
21113_geometry/fill_ring.cpp(237): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
21114 with
21115 [
21116 _Ty=int
21117 ]
21118_geometry/fill_ring.cpp(238): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
21119 with
21120 [
21121 _Ty=int
21122 ]
21123_geometry/fill_ring.cpp(239): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
21124 with
21125 [
21126 _Ty=int
21127 ]
21128_geometry/fill_ring.cpp(512): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
21129_geometry/fill_ring.cpp(569): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
21130"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/geometry.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\geometry.obj
21131geometry.cpp
21132"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/intercept.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\intercept.obj
21133intercept.cpp
21134_geometry/intercept.cpp(108): warning C4244: 'argument': conversion from 'int64_t' to 'long', possible loss of data
21135_geometry/intercept.cpp(256): warning C4244: 'argument': conversion from 'int64_t' to 'long', possible loss of data
21136_geometry/intercept.cpp(277): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21137_geometry/intercept.cpp(296): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21138_geometry/intercept.cpp(368): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21139_geometry/intercept.cpp(392): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21140_geometry/intercept.cpp(398): warning C4244: '=': conversion from 'int64_t' to 'unsigned char', possible loss of data
21141_geometry/intercept.cpp(462): warning C4244: 'argument': conversion from 'int64_t' to 'long', possible loss of data
21142"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/matrix.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\matrix.obj
21143matrix.cpp
21144"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/spline.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\spline.obj
21145spline.cpp
21146_geometry/spline.cpp(81): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21147_geometry/spline.cpp(83): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
21148_geometry/spline.cpp(104): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
21149"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/transform.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\transform.obj
21150transform.cpp
21151"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_geometry/vector_ops.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_geometry\vector_ops.obj
21152vector_ops.cpp
21153"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__geometry build\temp.win-amd64-cpython-311\Release\_geometry\bounds.obj build\temp.win-amd64-cpython-311\Release\_geometry\closepoints.obj build\temp.win-amd64-cpython-311\Release\_geometry\cylinderrot.obj build\temp.win-amd64-cpython-311\Release\_geometry\distances.obj build\temp.win-amd64-cpython-311\Release\_geometry\distancespy.obj build\temp.win-amd64-cpython-311\Release\_geometry\fill_ring.obj build\temp.win-amd64-cpython-311\Release\_geometry\geometry.obj build\temp.win-amd64-cpython-311\Release\_geometry\intercept.obj build\temp.win-amd64-cpython-311\Release\_geometry\matrix.obj build\temp.win-amd64-cpython-311\Release\_geometry\spline.obj build\temp.win-amd64-cpython-311\Release\_geometry\transform.obj build\temp.win-amd64-cpython-311\Release\_geometry\vector_ops.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\geometry\_geometry.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_geometry\_geometry.cp311-win_amd64.lib
21154 Creating library build\temp.win-amd64-cpython-311\Release\_geometry\_geometry.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_geometry\_geometry.cp311-win_amd64.exp
21155Generating code
21156Finished generating code
21157running bdist_wheel
21158installing to build\bdist.win-amd64\wheel
21159running install
21160running install_lib
21161running build_ext
21162creating build\bdist.win-amd64\wheel
21163creating build\bdist.win-amd64\wheel\chimerax
21164creating build\bdist.win-amd64\wheel\chimerax\geometry
21165copying build\lib.win-amd64-cpython-311\chimerax\geometry\adaptive_tree.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21166copying build\lib.win-amd64-cpython-311\chimerax\geometry\align.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21167copying build\lib.win-amd64-cpython-311\chimerax\geometry\bins.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21168copying build\lib.win-amd64-cpython-311\chimerax\geometry\bounds.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21169copying build\lib.win-amd64-cpython-311\chimerax\geometry\icosahedron.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21170copying build\lib.win-amd64-cpython-311\chimerax\geometry\matrix.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21171copying build\lib.win-amd64-cpython-311\chimerax\geometry\place.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21172copying build\lib.win-amd64-cpython-311\chimerax\geometry\plane.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21173copying build\lib.win-amd64-cpython-311\chimerax\geometry\psession.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21174copying build\lib.win-amd64-cpython-311\chimerax\geometry\sphere.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21175copying build\lib.win-amd64-cpython-311\chimerax\geometry\spline.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21176copying build\lib.win-amd64-cpython-311\chimerax\geometry\symmetry.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21177copying build\lib.win-amd64-cpython-311\chimerax\geometry\vector.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21178copying build\lib.win-amd64-cpython-311\chimerax\geometry\_geometry.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21179copying build\lib.win-amd64-cpython-311\chimerax\geometry\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\geometry
21180running install_egg_info
21181running egg_info
21182creating ChimeraX_Geometry.egg-info
21183writing ChimeraX_Geometry.egg-info\PKG-INFO
21184writing dependency_links to ChimeraX_Geometry.egg-info\dependency_links.txt
21185writing requirements to ChimeraX_Geometry.egg-info\requires.txt
21186writing top-level names to ChimeraX_Geometry.egg-info\top_level.txt
21187writing manifest file 'ChimeraX_Geometry.egg-info\SOURCES.txt'
21188reading manifest file 'ChimeraX_Geometry.egg-info\SOURCES.txt'
21189writing manifest file 'ChimeraX_Geometry.egg-info\SOURCES.txt'
21190Copying ChimeraX_Geometry.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Geometry-1.3-py3.11.egg-info
21191running install_scripts
21192C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
21193 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
21194creating build\bdist.win-amd64\wheel\chimerax_geometry-1.3.dist-info\WHEEL
21195creating 'dist\chimerax_geometry-1.3-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
21196adding 'chimerax/geometry/__init__.py'
21197adding 'chimerax/geometry/_geometry.cp311-win_amd64.pyd'
21198adding 'chimerax/geometry/adaptive_tree.py'
21199adding 'chimerax/geometry/align.py'
21200adding 'chimerax/geometry/bins.py'
21201adding 'chimerax/geometry/bounds.py'
21202adding 'chimerax/geometry/icosahedron.py'
21203adding 'chimerax/geometry/matrix.py'
21204adding 'chimerax/geometry/place.py'
21205adding 'chimerax/geometry/plane.py'
21206adding 'chimerax/geometry/psession.py'
21207adding 'chimerax/geometry/sphere.py'
21208adding 'chimerax/geometry/spline.py'
21209adding 'chimerax/geometry/symmetry.py'
21210adding 'chimerax/geometry/vector.py'
21211adding 'chimerax_geometry-1.3.dist-info/METADATA'
21212adding 'chimerax_geometry-1.3.dist-info/WHEEL'
21213adding 'chimerax_geometry-1.3.dist-info/top_level.txt'
21214adding 'chimerax_geometry-1.3.dist-info/RECORD'
21215removing build\bdist.win-amd64\wheel
21216Distribution is in .\dist\ChimeraX_Geometry-1.3-cp311-cp311-win_amd64.whl
21217STATUS:
21218Installing bundle
21219INFO:
21220Executing: toolshed install .\dist\ChimeraX_Geometry-1.3-cp311-cp311-win_amd64.whl userOnly false noDeps true
21221Installed ChimeraX-Geometry (1.3)
21222
21223make sync
21224make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
21225cp -av dist/*.whl ../../../build/sync
21226'dist/chimerax_geometry-1.3-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_geometry-1.3-cp311-cp311-win_amd64.whl'
21227make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
21228make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/geometry'
21229make -C gltf build
21230make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
21231if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21232 echo "missing ChimeraX application's python"; exit 1; \
21233else \
21234 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21235fi
21236INFO:
21237Executing: devel build . exit true
21238C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21239!!
21240
21241 ********************************************************************************
21242 Please consider removing the following classifiers in favor of a SPDX license expression:
21243
21244 License :: Free for non-commercial use
21245
21246 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21247 ********************************************************************************
21248
21249!!
21250 self._finalize_license_expression()
21251running build
21252running build_py
21253creating build\lib\chimerax\gltf
21254copying src\gltf.py -> build\lib\chimerax\gltf
21255copying src\__init__.py -> build\lib\chimerax\gltf
21256running bdist_wheel
21257installing to build\bdist.win-amd64\wheel
21258running install
21259running install_lib
21260creating build\bdist.win-amd64\wheel
21261creating build\bdist.win-amd64\wheel\chimerax
21262creating build\bdist.win-amd64\wheel\chimerax\gltf
21263copying build\lib\chimerax\gltf\gltf.py -> build\bdist.win-amd64\wheel\.\chimerax\gltf
21264copying build\lib\chimerax\gltf\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\gltf
21265running install_egg_info
21266running egg_info
21267creating ChimeraX_gltf.egg-info
21268writing ChimeraX_gltf.egg-info\PKG-INFO
21269writing dependency_links to ChimeraX_gltf.egg-info\dependency_links.txt
21270writing requirements to ChimeraX_gltf.egg-info\requires.txt
21271writing top-level names to ChimeraX_gltf.egg-info\top_level.txt
21272writing manifest file 'ChimeraX_gltf.egg-info\SOURCES.txt'
21273reading manifest file 'ChimeraX_gltf.egg-info\SOURCES.txt'
21274writing manifest file 'ChimeraX_gltf.egg-info\SOURCES.txt'
21275Copying ChimeraX_gltf.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_gltf-1.0-py3.11.egg-info
21276running install_scripts
21277creating build\bdist.win-amd64\wheel\chimerax_gltf-1.0.dist-info\WHEEL
21278creating 'dist\chimerax_gltf-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21279adding 'chimerax/gltf/__init__.py'
21280adding 'chimerax/gltf/gltf.py'
21281adding 'chimerax_gltf-1.0.dist-info/METADATA'
21282adding 'chimerax_gltf-1.0.dist-info/WHEEL'
21283adding 'chimerax_gltf-1.0.dist-info/top_level.txt'
21284adding 'chimerax_gltf-1.0.dist-info/RECORD'
21285removing build\bdist.win-amd64\wheel
21286Distribution is in .\dist\ChimeraX_gltf-1.0-py3-none-any.whl
21287INFO:
21288
21289make sync
21290make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
21291cp -av dist/*.whl ../../../build/sync
21292'dist/chimerax_gltf-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_gltf-1.0-py3-none-any.whl'
21293make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
21294make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/gltf'
21295make -C graphics build
21296make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
21297if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21298 echo "missing ChimeraX application's python"; exit 1; \
21299else \
21300 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel install . user false exit true noDeps true"; \
21301fi
21302INFO:
21303Executing: devel install . user false exit true noDeps true
21304C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21305!!
21306
21307 ********************************************************************************
21308 Please consider removing the following classifiers in favor of a SPDX license expression:
21309
21310 License :: Free for non-commercial use
21311
21312 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21313 ********************************************************************************
21314
21315!!
21316 self._finalize_license_expression()
21317running build
21318running build_py
21319creating build\lib.win-amd64-cpython-311\chimerax\graphics
21320copying src\camera.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21321copying src\camera360.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21322copying src\clipping.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21323copying src\crossfade.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21324copying src\drawing.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21325copying src\gllist.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21326copying src\gsession.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21327copying src\linetype.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21328copying src\opengl.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21329copying src\view.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21330copying src\windowsize.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21331copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\graphics
21332copying src\vertexShader.txt -> build\lib.win-amd64-cpython-311\chimerax\graphics
21333copying src\fragmentShader.txt -> build\lib.win-amd64-cpython-311\chimerax\graphics
21334running build_ext
21335building 'chimerax.graphics._graphics' extension
21336creating build\temp.win-amd64-cpython-311\Release\_graphics
21337"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_graphics/blend_rgba.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_graphics\blend_rgba.obj
21338blend_rgba.cpp
21339_graphics/blend_rgba.cpp(115): warning C4244: 'argument': conversion from 'int64_t' to 'long', possible loss of data
21340_graphics/blend_rgba.cpp(56): warning C4244: 'initializing': conversion from 'T' to 'float', possible loss of data
21341 with
21342 [
21343 T=double
21344 ]
21345_graphics/blend_rgba.cpp(113): note: see reference to function template instantiation 'void blend_colors<double>(float,const Reference_Counted_Array::Array<double> &,const Reference_Counted_Array::Array<double> &,const Reference_Counted_Array::Array<double> &,float,const Reference_Counted_Array::Array<double> &,int64_t *)' being compiled
21346_graphics/blend_rgba.cpp(57): warning C4244: 'initializing': conversion from 'T' to 'float', possible loss of data
21347 with
21348 [
21349 T=double
21350 ]
21351_graphics/blend_rgba.cpp(58): warning C4244: 'initializing': conversion from 'T' to 'float', possible loss of data
21352 with
21353 [
21354 T=double
21355 ]
21356"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_graphics/count.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_graphics\count.obj
21357count.cpp
21358_graphics/count.cpp(55): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
21359"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_graphics/graphics.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_graphics\graphics.obj
21360graphics.cpp
21361"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_graphics/linux_swap_interval.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_graphics\linux_swap_interval.obj
21362linux_swap_interval.cpp
21363"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_graphics/mac_swap_interval.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_graphics\mac_swap_interval.obj
21364mac_swap_interval.cpp
21365"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_graphics/mesh_edges.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_graphics\mesh_edges.obj
21366mesh_edges.cpp
21367"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib opengl32.lib /EXPORT:PyInit__graphics build\temp.win-amd64-cpython-311\Release\_graphics\blend_rgba.obj build\temp.win-amd64-cpython-311\Release\_graphics\count.obj build\temp.win-amd64-cpython-311\Release\_graphics\graphics.obj build\temp.win-amd64-cpython-311\Release\_graphics\linux_swap_interval.obj build\temp.win-amd64-cpython-311\Release\_graphics\mac_swap_interval.obj build\temp.win-amd64-cpython-311\Release\_graphics\mesh_edges.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\graphics\_graphics.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_graphics\_graphics.cp311-win_amd64.lib
21368 Creating library build\temp.win-amd64-cpython-311\Release\_graphics\_graphics.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_graphics\_graphics.cp311-win_amd64.exp
21369Generating code
21370Finished generating code
21371running bdist_wheel
21372installing to build\bdist.win-amd64\wheel
21373running install
21374running install_lib
21375running build_ext
21376creating build\bdist.win-amd64\wheel
21377creating build\bdist.win-amd64\wheel\chimerax
21378creating build\bdist.win-amd64\wheel\chimerax\graphics
21379copying build\lib.win-amd64-cpython-311\chimerax\graphics\camera.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21380copying build\lib.win-amd64-cpython-311\chimerax\graphics\camera360.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21381copying build\lib.win-amd64-cpython-311\chimerax\graphics\clipping.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21382copying build\lib.win-amd64-cpython-311\chimerax\graphics\crossfade.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21383copying build\lib.win-amd64-cpython-311\chimerax\graphics\drawing.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21384copying build\lib.win-amd64-cpython-311\chimerax\graphics\fragmentShader.txt -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21385copying build\lib.win-amd64-cpython-311\chimerax\graphics\gllist.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21386copying build\lib.win-amd64-cpython-311\chimerax\graphics\gsession.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21387copying build\lib.win-amd64-cpython-311\chimerax\graphics\linetype.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21388copying build\lib.win-amd64-cpython-311\chimerax\graphics\opengl.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21389copying build\lib.win-amd64-cpython-311\chimerax\graphics\vertexShader.txt -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21390copying build\lib.win-amd64-cpython-311\chimerax\graphics\view.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21391copying build\lib.win-amd64-cpython-311\chimerax\graphics\windowsize.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21392copying build\lib.win-amd64-cpython-311\chimerax\graphics\_graphics.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21393copying build\lib.win-amd64-cpython-311\chimerax\graphics\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\graphics
21394running install_egg_info
21395running egg_info
21396creating ChimeraX_Graphics.egg-info
21397writing ChimeraX_Graphics.egg-info\PKG-INFO
21398writing dependency_links to ChimeraX_Graphics.egg-info\dependency_links.txt
21399writing requirements to ChimeraX_Graphics.egg-info\requires.txt
21400writing top-level names to ChimeraX_Graphics.egg-info\top_level.txt
21401writing manifest file 'ChimeraX_Graphics.egg-info\SOURCES.txt'
21402reading manifest file 'ChimeraX_Graphics.egg-info\SOURCES.txt'
21403writing manifest file 'ChimeraX_Graphics.egg-info\SOURCES.txt'
21404Copying ChimeraX_Graphics.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Graphics-1.4.1-py3.11.egg-info
21405running install_scripts
21406C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
21407 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
21408creating build\bdist.win-amd64\wheel\chimerax_graphics-1.4.1.dist-info\WHEEL
21409creating 'dist\chimerax_graphics-1.4.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
21410adding 'chimerax/graphics/__init__.py'
21411adding 'chimerax/graphics/_graphics.cp311-win_amd64.pyd'
21412adding 'chimerax/graphics/camera.py'
21413adding 'chimerax/graphics/camera360.py'
21414adding 'chimerax/graphics/clipping.py'
21415adding 'chimerax/graphics/crossfade.py'
21416adding 'chimerax/graphics/drawing.py'
21417adding 'chimerax/graphics/fragmentShader.txt'
21418adding 'chimerax/graphics/gllist.py'
21419adding 'chimerax/graphics/gsession.py'
21420adding 'chimerax/graphics/linetype.py'
21421adding 'chimerax/graphics/opengl.py'
21422adding 'chimerax/graphics/vertexShader.txt'
21423adding 'chimerax/graphics/view.py'
21424adding 'chimerax/graphics/windowsize.py'
21425adding 'chimerax_graphics-1.4.1.dist-info/METADATA'
21426adding 'chimerax_graphics-1.4.1.dist-info/WHEEL'
21427adding 'chimerax_graphics-1.4.1.dist-info/top_level.txt'
21428adding 'chimerax_graphics-1.4.1.dist-info/RECORD'
21429removing build\bdist.win-amd64\wheel
21430Distribution is in .\dist\ChimeraX_Graphics-1.4.1-cp311-cp311-win_amd64.whl
21431STATUS:
21432Installing bundle
21433INFO:
21434Executing: toolshed install .\dist\ChimeraX_Graphics-1.4.1-cp311-cp311-win_amd64.whl userOnly false noDeps true
21435Installed ChimeraX-Graphics (1.4.1)
21436
21437make sync
21438make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
21439cp -av dist/*.whl ../../../build/sync
21440'dist/chimerax_graphics-1.4.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_graphics-1.4.1-cp311-cp311-win_amd64.whl'
21441make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
21442make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/graphics'
21443make -C hbonds build
21444make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
21445if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21446 echo "missing ChimeraX application's python"; exit 1; \
21447else \
21448 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21449fi
21450INFO:
21451Executing: devel build . exit true
21452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21453!!
21454
21455 ********************************************************************************
21456 Please consider removing the following classifiers in favor of a SPDX license expression:
21457
21458 License :: Free for non-commercial use
21459
21460 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21461 ********************************************************************************
21462
21463!!
21464 self._finalize_license_expression()
21465running build
21466running build_py
21467creating build\lib\chimerax\hbonds
21468copying src\acceptor_geom.py -> build\lib\chimerax\hbonds
21469copying src\cmd.py -> build\lib\chimerax\hbonds
21470copying src\common_geom.py -> build\lib\chimerax\hbonds
21471copying src\donor_geom.py -> build\lib\chimerax\hbonds
21472copying src\gui.py -> build\lib\chimerax\hbonds
21473copying src\hbond.py -> build\lib\chimerax\hbonds
21474copying src\hydpos.py -> build\lib\chimerax\hbonds
21475copying src\tool.py -> build\lib\chimerax\hbonds
21476copying src\__init__.py -> build\lib\chimerax\hbonds
21477running bdist_wheel
21478installing to build\bdist.win-amd64\wheel
21479running install
21480running install_lib
21481creating build\bdist.win-amd64\wheel
21482creating build\bdist.win-amd64\wheel\chimerax
21483creating build\bdist.win-amd64\wheel\chimerax\hbonds
21484copying build\lib\chimerax\hbonds\acceptor_geom.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21485copying build\lib\chimerax\hbonds\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21486copying build\lib\chimerax\hbonds\common_geom.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21487copying build\lib\chimerax\hbonds\donor_geom.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21488copying build\lib\chimerax\hbonds\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21489copying build\lib\chimerax\hbonds\hbond.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21490copying build\lib\chimerax\hbonds\hydpos.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21491copying build\lib\chimerax\hbonds\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21492copying build\lib\chimerax\hbonds\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\hbonds
21493running install_egg_info
21494running egg_info
21495creating ChimeraX_Hbonds.egg-info
21496writing ChimeraX_Hbonds.egg-info\PKG-INFO
21497writing dependency_links to ChimeraX_Hbonds.egg-info\dependency_links.txt
21498writing requirements to ChimeraX_Hbonds.egg-info\requires.txt
21499writing top-level names to ChimeraX_Hbonds.egg-info\top_level.txt
21500writing manifest file 'ChimeraX_Hbonds.egg-info\SOURCES.txt'
21501reading manifest file 'ChimeraX_Hbonds.egg-info\SOURCES.txt'
21502writing manifest file 'ChimeraX_Hbonds.egg-info\SOURCES.txt'
21503Copying ChimeraX_Hbonds.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Hbonds-2.5.3-py3.11.egg-info
21504running install_scripts
21505creating build\bdist.win-amd64\wheel\chimerax_hbonds-2.5.3.dist-info\WHEEL
21506creating 'dist\chimerax_hbonds-2.5.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21507adding 'chimerax/hbonds/__init__.py'
21508adding 'chimerax/hbonds/acceptor_geom.py'
21509adding 'chimerax/hbonds/cmd.py'
21510adding 'chimerax/hbonds/common_geom.py'
21511adding 'chimerax/hbonds/donor_geom.py'
21512adding 'chimerax/hbonds/gui.py'
21513adding 'chimerax/hbonds/hbond.py'
21514adding 'chimerax/hbonds/hydpos.py'
21515adding 'chimerax/hbonds/tool.py'
21516adding 'chimerax_hbonds-2.5.3.dist-info/METADATA'
21517adding 'chimerax_hbonds-2.5.3.dist-info/WHEEL'
21518adding 'chimerax_hbonds-2.5.3.dist-info/top_level.txt'
21519adding 'chimerax_hbonds-2.5.3.dist-info/RECORD'
21520removing build\bdist.win-amd64\wheel
21521Distribution is in .\dist\ChimeraX_Hbonds-2.5.3-py3-none-any.whl
21522INFO:
21523
21524make sync
21525make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
21526cp -av dist/*.whl ../../../build/sync
21527'dist/chimerax_hbonds-2.5.3-py3-none-any.whl' -> '../../../build/sync/chimerax_hbonds-2.5.3-py3-none-any.whl'
21528make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
21529make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hbonds'
21530make -C help_viewer build
21531make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
21532if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21533 echo "missing ChimeraX application's python"; exit 1; \
21534else \
21535 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21536fi
21537INFO:
21538Executing: devel build . exit true
21539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21540!!
21541
21542 ********************************************************************************
21543 Please consider removing the following classifiers in favor of a SPDX license expression:
21544
21545 License :: Free for non-commercial use
21546
21547 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21548 ********************************************************************************
21549
21550!!
21551 self._finalize_license_expression()
21552running build
21553running build_py
21554creating build\lib\chimerax\help_viewer
21555copying src\cmd.py -> build\lib\chimerax\help_viewer
21556copying src\tool.py -> build\lib\chimerax\help_viewer
21557copying src\__init__.py -> build\lib\chimerax\help_viewer
21558running bdist_wheel
21559installing to build\bdist.win-amd64\wheel
21560running install
21561running install_lib
21562creating build\bdist.win-amd64\wheel
21563creating build\bdist.win-amd64\wheel\chimerax
21564creating build\bdist.win-amd64\wheel\chimerax\help_viewer
21565copying build\lib\chimerax\help_viewer\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\help_viewer
21566copying build\lib\chimerax\help_viewer\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\help_viewer
21567copying build\lib\chimerax\help_viewer\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\help_viewer
21568running install_egg_info
21569running egg_info
21570creating ChimeraX_Help.egg-info
21571writing ChimeraX_Help.egg-info\PKG-INFO
21572writing dependency_links to ChimeraX_Help.egg-info\dependency_links.txt
21573writing requirements to ChimeraX_Help.egg-info\requires.txt
21574writing top-level names to ChimeraX_Help.egg-info\top_level.txt
21575writing manifest file 'ChimeraX_Help.egg-info\SOURCES.txt'
21576reading manifest file 'ChimeraX_Help.egg-info\SOURCES.txt'
21577writing manifest file 'ChimeraX_Help.egg-info\SOURCES.txt'
21578Copying ChimeraX_Help.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Help-1.3-py3.11.egg-info
21579running install_scripts
21580creating build\bdist.win-amd64\wheel\chimerax_help-1.3.dist-info\WHEEL
21581creating 'dist\chimerax_help-1.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21582adding 'chimerax/help_viewer/__init__.py'
21583adding 'chimerax/help_viewer/cmd.py'
21584adding 'chimerax/help_viewer/tool.py'
21585adding 'chimerax_help-1.3.dist-info/METADATA'
21586adding 'chimerax_help-1.3.dist-info/WHEEL'
21587adding 'chimerax_help-1.3.dist-info/top_level.txt'
21588adding 'chimerax_help-1.3.dist-info/RECORD'
21589removing build\bdist.win-amd64\wheel
21590Distribution is in .\dist\ChimeraX_Help-1.3-py3-none-any.whl
21591INFO:
21592
21593make sync
21594make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
21595cp -av dist/*.whl ../../../build/sync
21596'dist/chimerax_help-1.3-py3-none-any.whl' -> '../../../build/sync/chimerax_help-1.3-py3-none-any.whl'
21597make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
21598make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/help_viewer'
21599make -C hkcage build
21600make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
21601if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21602 echo "missing ChimeraX application's python"; exit 1; \
21603else \
21604 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21605fi
21606INFO:
21607Executing: devel build . exit true
21608C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21609!!
21610
21611 ********************************************************************************
21612 Please consider removing the following classifiers in favor of a SPDX license expression:
21613
21614 License :: Free for non-commercial use
21615
21616 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21617 ********************************************************************************
21618
21619!!
21620 self._finalize_license_expression()
21621running build
21622running build_py
21623creating build\lib\chimerax\hkcage
21624copying src\cage.py -> build\lib\chimerax\hkcage
21625copying src\cmd.py -> build\lib\chimerax\hkcage
21626copying src\__init__.py -> build\lib\chimerax\hkcage
21627running bdist_wheel
21628installing to build\bdist.win-amd64\wheel
21629running install
21630running install_lib
21631creating build\bdist.win-amd64\wheel
21632creating build\bdist.win-amd64\wheel\chimerax
21633creating build\bdist.win-amd64\wheel\chimerax\hkcage
21634copying build\lib\chimerax\hkcage\cage.py -> build\bdist.win-amd64\wheel\.\chimerax\hkcage
21635copying build\lib\chimerax\hkcage\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\hkcage
21636copying build\lib\chimerax\hkcage\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\hkcage
21637running install_egg_info
21638running egg_info
21639creating ChimeraX_HKCage.egg-info
21640writing ChimeraX_HKCage.egg-info\PKG-INFO
21641writing dependency_links to ChimeraX_HKCage.egg-info\dependency_links.txt
21642writing requirements to ChimeraX_HKCage.egg-info\requires.txt
21643writing top-level names to ChimeraX_HKCage.egg-info\top_level.txt
21644writing manifest file 'ChimeraX_HKCage.egg-info\SOURCES.txt'
21645reading manifest file 'ChimeraX_HKCage.egg-info\SOURCES.txt'
21646writing manifest file 'ChimeraX_HKCage.egg-info\SOURCES.txt'
21647Copying ChimeraX_HKCage.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_HKCage-1.3-py3.11.egg-info
21648running install_scripts
21649creating build\bdist.win-amd64\wheel\chimerax_hkcage-1.3.dist-info\WHEEL
21650creating 'dist\chimerax_hkcage-1.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21651adding 'chimerax/hkcage/__init__.py'
21652adding 'chimerax/hkcage/cage.py'
21653adding 'chimerax/hkcage/cmd.py'
21654adding 'chimerax_hkcage-1.3.dist-info/METADATA'
21655adding 'chimerax_hkcage-1.3.dist-info/WHEEL'
21656adding 'chimerax_hkcage-1.3.dist-info/top_level.txt'
21657adding 'chimerax_hkcage-1.3.dist-info/RECORD'
21658removing build\bdist.win-amd64\wheel
21659Distribution is in .\dist\ChimeraX_HKCage-1.3-py3-none-any.whl
21660INFO:
21661
21662make sync
21663make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
21664cp -av dist/*.whl ../../../build/sync
21665'dist/chimerax_hkcage-1.3-py3-none-any.whl' -> '../../../build/sync/chimerax_hkcage-1.3-py3-none-any.whl'
21666make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
21667make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/hkcage'
21668make -C ihm build
21669make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
21670if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21671 echo "missing ChimeraX application's python"; exit 1; \
21672else \
21673 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21674fi
21675INFO:
21676Executing: devel build . exit true
21677C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21678!!
21679
21680 ********************************************************************************
21681 Please consider removing the following classifiers in favor of a SPDX license expression:
21682
21683 License :: Free for non-commercial use
21684
21685 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21686 ********************************************************************************
21687
21688!!
21689 self._finalize_license_expression()
21690running build
21691running build_py
21692creating build\lib\chimerax\ihm
21693copying src\coordsets.py -> build\lib\chimerax\ihm
21694copying src\doi_fetch.py -> build\lib\chimerax\ihm
21695copying src\fetch_ihm.py -> build\lib\chimerax\ihm
21696copying src\ihm.py -> build\lib\chimerax\ihm
21697copying src\savecoords.py -> build\lib\chimerax\ihm
21698copying src\__init__.py -> build\lib\chimerax\ihm
21699running bdist_wheel
21700installing to build\bdist.win-amd64\wheel
21701running install
21702running install_lib
21703creating build\bdist.win-amd64\wheel
21704creating build\bdist.win-amd64\wheel\chimerax
21705creating build\bdist.win-amd64\wheel\chimerax\ihm
21706copying build\lib\chimerax\ihm\coordsets.py -> build\bdist.win-amd64\wheel\.\chimerax\ihm
21707copying build\lib\chimerax\ihm\doi_fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\ihm
21708copying build\lib\chimerax\ihm\fetch_ihm.py -> build\bdist.win-amd64\wheel\.\chimerax\ihm
21709copying build\lib\chimerax\ihm\ihm.py -> build\bdist.win-amd64\wheel\.\chimerax\ihm
21710copying build\lib\chimerax\ihm\savecoords.py -> build\bdist.win-amd64\wheel\.\chimerax\ihm
21711copying build\lib\chimerax\ihm\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\ihm
21712running install_egg_info
21713running egg_info
21714creating ChimeraX_IHM.egg-info
21715writing ChimeraX_IHM.egg-info\PKG-INFO
21716writing dependency_links to ChimeraX_IHM.egg-info\dependency_links.txt
21717writing requirements to ChimeraX_IHM.egg-info\requires.txt
21718writing top-level names to ChimeraX_IHM.egg-info\top_level.txt
21719writing manifest file 'ChimeraX_IHM.egg-info\SOURCES.txt'
21720reading manifest file 'ChimeraX_IHM.egg-info\SOURCES.txt'
21721writing manifest file 'ChimeraX_IHM.egg-info\SOURCES.txt'
21722Copying ChimeraX_IHM.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_IHM-1.1-py3.11.egg-info
21723running install_scripts
21724creating build\bdist.win-amd64\wheel\chimerax_ihm-1.1.dist-info\WHEEL
21725creating 'dist\chimerax_ihm-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21726adding 'chimerax/ihm/__init__.py'
21727adding 'chimerax/ihm/coordsets.py'
21728adding 'chimerax/ihm/doi_fetch.py'
21729adding 'chimerax/ihm/fetch_ihm.py'
21730adding 'chimerax/ihm/ihm.py'
21731adding 'chimerax/ihm/savecoords.py'
21732adding 'chimerax_ihm-1.1.dist-info/METADATA'
21733adding 'chimerax_ihm-1.1.dist-info/WHEEL'
21734adding 'chimerax_ihm-1.1.dist-info/top_level.txt'
21735adding 'chimerax_ihm-1.1.dist-info/RECORD'
21736removing build\bdist.win-amd64\wheel
21737Distribution is in .\dist\ChimeraX_IHM-1.1-py3-none-any.whl
21738INFO:
21739
21740make sync
21741make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
21742cp -av dist/*.whl ../../../build/sync
21743'dist/chimerax_ihm-1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_ihm-1.1-py3-none-any.whl'
21744make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
21745make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ihm'
21746make -C image_formats build
21747make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
21748if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21749 echo "missing ChimeraX application's python"; exit 1; \
21750else \
21751 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21752fi
21753INFO:
21754Executing: devel build . exit true
21755C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21756!!
21757
21758 ********************************************************************************
21759 Please consider removing the following classifiers in favor of a SPDX license expression:
21760
21761 License :: Free for non-commercial use
21762
21763 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21764 ********************************************************************************
21765
21766!!
21767 self._finalize_license_expression()
21768running build
21769running build_py
21770creating build\lib\chimerax\image_formats
21771copying src\gui.py -> build\lib\chimerax\image_formats
21772copying src\open_image.py -> build\lib\chimerax\image_formats
21773copying src\save.py -> build\lib\chimerax\image_formats
21774copying src\__init__.py -> build\lib\chimerax\image_formats
21775running bdist_wheel
21776installing to build\bdist.win-amd64\wheel
21777running install
21778running install_lib
21779creating build\bdist.win-amd64\wheel
21780creating build\bdist.win-amd64\wheel\chimerax
21781creating build\bdist.win-amd64\wheel\chimerax\image_formats
21782copying build\lib\chimerax\image_formats\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\image_formats
21783copying build\lib\chimerax\image_formats\open_image.py -> build\bdist.win-amd64\wheel\.\chimerax\image_formats
21784copying build\lib\chimerax\image_formats\save.py -> build\bdist.win-amd64\wheel\.\chimerax\image_formats
21785copying build\lib\chimerax\image_formats\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\image_formats
21786running install_egg_info
21787running egg_info
21788creating ChimeraX_ImageFormats.egg-info
21789writing ChimeraX_ImageFormats.egg-info\PKG-INFO
21790writing dependency_links to ChimeraX_ImageFormats.egg-info\dependency_links.txt
21791writing requirements to ChimeraX_ImageFormats.egg-info\requires.txt
21792writing top-level names to ChimeraX_ImageFormats.egg-info\top_level.txt
21793writing manifest file 'ChimeraX_ImageFormats.egg-info\SOURCES.txt'
21794reading manifest file 'ChimeraX_ImageFormats.egg-info\SOURCES.txt'
21795writing manifest file 'ChimeraX_ImageFormats.egg-info\SOURCES.txt'
21796Copying ChimeraX_ImageFormats.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ImageFormats-1.2-py3.11.egg-info
21797running install_scripts
21798creating build\bdist.win-amd64\wheel\chimerax_imageformats-1.2.dist-info\WHEEL
21799creating 'dist\chimerax_imageformats-1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21800adding 'chimerax/image_formats/__init__.py'
21801adding 'chimerax/image_formats/gui.py'
21802adding 'chimerax/image_formats/open_image.py'
21803adding 'chimerax/image_formats/save.py'
21804adding 'chimerax_imageformats-1.2.dist-info/METADATA'
21805adding 'chimerax_imageformats-1.2.dist-info/WHEEL'
21806adding 'chimerax_imageformats-1.2.dist-info/top_level.txt'
21807adding 'chimerax_imageformats-1.2.dist-info/RECORD'
21808removing build\bdist.win-amd64\wheel
21809Distribution is in .\dist\ChimeraX_ImageFormats-1.2-py3-none-any.whl
21810INFO:
21811
21812make sync
21813make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
21814cp -av dist/*.whl ../../../build/sync
21815'dist/chimerax_imageformats-1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_imageformats-1.2-py3-none-any.whl'
21816make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
21817make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/image_formats'
21818make -C imod build
21819make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
21820if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21821 echo "missing ChimeraX application's python"; exit 1; \
21822else \
21823 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21824fi
21825INFO:
21826Executing: devel build . exit true
21827C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21828!!
21829
21830 ********************************************************************************
21831 Please consider removing the following classifiers in favor of a SPDX license expression:
21832
21833 License :: Free for non-commercial use
21834
21835 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21836 ********************************************************************************
21837
21838!!
21839 self._finalize_license_expression()
21840running build
21841running build_py
21842creating build\lib\chimerax\imod
21843copying src\imod.py -> build\lib\chimerax\imod
21844copying src\imod_spec.py -> build\lib\chimerax\imod
21845copying src\__init__.py -> build\lib\chimerax\imod
21846running bdist_wheel
21847installing to build\bdist.win-amd64\wheel
21848running install
21849running install_lib
21850creating build\bdist.win-amd64\wheel
21851creating build\bdist.win-amd64\wheel\chimerax
21852creating build\bdist.win-amd64\wheel\chimerax\imod
21853copying build\lib\chimerax\imod\imod.py -> build\bdist.win-amd64\wheel\.\chimerax\imod
21854copying build\lib\chimerax\imod\imod_spec.py -> build\bdist.win-amd64\wheel\.\chimerax\imod
21855copying build\lib\chimerax\imod\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\imod
21856running install_egg_info
21857running egg_info
21858creating ChimeraX_IMOD.egg-info
21859writing ChimeraX_IMOD.egg-info\PKG-INFO
21860writing dependency_links to ChimeraX_IMOD.egg-info\dependency_links.txt
21861writing requirements to ChimeraX_IMOD.egg-info\requires.txt
21862writing top-level names to ChimeraX_IMOD.egg-info\top_level.txt
21863writing manifest file 'ChimeraX_IMOD.egg-info\SOURCES.txt'
21864reading manifest file 'ChimeraX_IMOD.egg-info\SOURCES.txt'
21865writing manifest file 'ChimeraX_IMOD.egg-info\SOURCES.txt'
21866Copying ChimeraX_IMOD.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_IMOD-1.0-py3.11.egg-info
21867running install_scripts
21868creating build\bdist.win-amd64\wheel\chimerax_imod-1.0.dist-info\WHEEL
21869creating 'dist\chimerax_imod-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21870adding 'chimerax/imod/__init__.py'
21871adding 'chimerax/imod/imod.py'
21872adding 'chimerax/imod/imod_spec.py'
21873adding 'chimerax_imod-1.0.dist-info/METADATA'
21874adding 'chimerax_imod-1.0.dist-info/WHEEL'
21875adding 'chimerax_imod-1.0.dist-info/top_level.txt'
21876adding 'chimerax_imod-1.0.dist-info/RECORD'
21877removing build\bdist.win-amd64\wheel
21878Distribution is in .\dist\ChimeraX_IMOD-1.0-py3-none-any.whl
21879INFO:
21880
21881make sync
21882make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
21883cp -av dist/*.whl ../../../build/sync
21884'dist/chimerax_imod-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_imod-1.0-py3-none-any.whl'
21885make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
21886make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/imod'
21887make -C interfaces build
21888make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
21889if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21890 echo "missing ChimeraX application's python"; exit 1; \
21891else \
21892 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21893fi
21894INFO:
21895Executing: devel build . exit true
21896C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21897!!
21898
21899 ********************************************************************************
21900 Please consider removing the following classifiers in favor of a SPDX license expression:
21901
21902 License :: Free for non-commercial use
21903
21904 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21905 ********************************************************************************
21906
21907!!
21908 self._finalize_license_expression()
21909running build
21910running build_py
21911creating build\lib\chimerax\interfaces
21912copying src\cmd.py -> build\lib\chimerax\interfaces
21913copying src\graph.py -> build\lib\chimerax\interfaces
21914copying src\resplot.py -> build\lib\chimerax\interfaces
21915copying src\tool.py -> build\lib\chimerax\interfaces
21916copying src\__init__.py -> build\lib\chimerax\interfaces
21917running bdist_wheel
21918installing to build\bdist.win-amd64\wheel
21919running install
21920running install_lib
21921creating build\bdist.win-amd64\wheel
21922creating build\bdist.win-amd64\wheel\chimerax
21923creating build\bdist.win-amd64\wheel\chimerax\interfaces
21924copying build\lib\chimerax\interfaces\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\interfaces
21925copying build\lib\chimerax\interfaces\graph.py -> build\bdist.win-amd64\wheel\.\chimerax\interfaces
21926copying build\lib\chimerax\interfaces\resplot.py -> build\bdist.win-amd64\wheel\.\chimerax\interfaces
21927copying build\lib\chimerax\interfaces\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\interfaces
21928copying build\lib\chimerax\interfaces\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\interfaces
21929running install_egg_info
21930running egg_info
21931creating ChimeraX_Contacts.egg-info
21932writing ChimeraX_Contacts.egg-info\PKG-INFO
21933writing dependency_links to ChimeraX_Contacts.egg-info\dependency_links.txt
21934writing requirements to ChimeraX_Contacts.egg-info\requires.txt
21935writing top-level names to ChimeraX_Contacts.egg-info\top_level.txt
21936writing manifest file 'ChimeraX_Contacts.egg-info\SOURCES.txt'
21937reading manifest file 'ChimeraX_Contacts.egg-info\SOURCES.txt'
21938writing manifest file 'ChimeraX_Contacts.egg-info\SOURCES.txt'
21939Copying ChimeraX_Contacts.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Contacts-1.0.1-py3.11.egg-info
21940running install_scripts
21941creating build\bdist.win-amd64\wheel\chimerax_contacts-1.0.1.dist-info\WHEEL
21942creating 'dist\chimerax_contacts-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
21943adding 'chimerax/interfaces/__init__.py'
21944adding 'chimerax/interfaces/cmd.py'
21945adding 'chimerax/interfaces/graph.py'
21946adding 'chimerax/interfaces/resplot.py'
21947adding 'chimerax/interfaces/tool.py'
21948adding 'chimerax_contacts-1.0.1.dist-info/METADATA'
21949adding 'chimerax_contacts-1.0.1.dist-info/WHEEL'
21950adding 'chimerax_contacts-1.0.1.dist-info/top_level.txt'
21951adding 'chimerax_contacts-1.0.1.dist-info/RECORD'
21952removing build\bdist.win-amd64\wheel
21953Distribution is in .\dist\ChimeraX_Contacts-1.0.1-py3-none-any.whl
21954INFO:
21955
21956make sync
21957make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
21958cp -av dist/*.whl ../../../build/sync
21959'dist/chimerax_contacts-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_contacts-1.0.1-py3-none-any.whl'
21960make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
21961make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/interfaces'
21962make -C items_inspection build
21963make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
21964if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
21965 echo "missing ChimeraX application's python"; exit 1; \
21966else \
21967 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
21968fi
21969INFO:
21970Executing: devel build . exit true
21971C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
21972!!
21973
21974 ********************************************************************************
21975 Please consider removing the following classifiers in favor of a SPDX license expression:
21976
21977 License :: Free for non-commercial use
21978
21979 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
21980 ********************************************************************************
21981
21982!!
21983 self._finalize_license_expression()
21984running build
21985running build_py
21986creating build\lib\chimerax\items_inspection
21987copying src\manager.py -> build\lib\chimerax\items_inspection
21988copying src\__init__.py -> build\lib\chimerax\items_inspection
21989running bdist_wheel
21990installing to build\bdist.win-amd64\wheel
21991running install
21992running install_lib
21993creating build\bdist.win-amd64\wheel
21994creating build\bdist.win-amd64\wheel\chimerax
21995creating build\bdist.win-amd64\wheel\chimerax\items_inspection
21996copying build\lib\chimerax\items_inspection\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\items_inspection
21997copying build\lib\chimerax\items_inspection\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\items_inspection
21998running install_egg_info
21999running egg_info
22000creating ChimeraX_ItemsInspection.egg-info
22001writing ChimeraX_ItemsInspection.egg-info\PKG-INFO
22002writing dependency_links to ChimeraX_ItemsInspection.egg-info\dependency_links.txt
22003writing requirements to ChimeraX_ItemsInspection.egg-info\requires.txt
22004writing top-level names to ChimeraX_ItemsInspection.egg-info\top_level.txt
22005writing manifest file 'ChimeraX_ItemsInspection.egg-info\SOURCES.txt'
22006reading manifest file 'ChimeraX_ItemsInspection.egg-info\SOURCES.txt'
22007writing manifest file 'ChimeraX_ItemsInspection.egg-info\SOURCES.txt'
22008Copying ChimeraX_ItemsInspection.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ItemsInspection-1.0.1-py3.11.egg-info
22009running install_scripts
22010creating build\bdist.win-amd64\wheel\chimerax_itemsinspection-1.0.1.dist-info\WHEEL
22011creating 'dist\chimerax_itemsinspection-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22012adding 'chimerax/items_inspection/__init__.py'
22013adding 'chimerax/items_inspection/manager.py'
22014adding 'chimerax_itemsinspection-1.0.1.dist-info/METADATA'
22015adding 'chimerax_itemsinspection-1.0.1.dist-info/WHEEL'
22016adding 'chimerax_itemsinspection-1.0.1.dist-info/top_level.txt'
22017adding 'chimerax_itemsinspection-1.0.1.dist-info/RECORD'
22018removing build\bdist.win-amd64\wheel
22019Distribution is in .\dist\ChimeraX_ItemsInspection-1.0.1-py3-none-any.whl
22020INFO:
22021
22022make sync
22023make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
22024cp -av dist/*.whl ../../../build/sync
22025'dist/chimerax_itemsinspection-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_itemsinspection-1.0.1-py3-none-any.whl'
22026make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
22027make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/items_inspection'
22028make -C io build
22029make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/io'
22030if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22031 echo "missing ChimeraX application's python"; exit 1; \
22032else \
22033 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22034fi
22035INFO:
22036Executing: devel build . exit true
22037C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22038!!
22039
22040 ********************************************************************************
22041 Please consider removing the following classifiers in favor of a SPDX license expression:
22042
22043 License :: Free for non-commercial use
22044
22045 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22046 ********************************************************************************
22047
22048!!
22049 self._finalize_license_expression()
22050running build
22051running build_py
22052creating build\lib\chimerax\io
22053copying src\compression.py -> build\lib\chimerax\io
22054copying src\io.py -> build\lib\chimerax\io
22055copying src\__init__.py -> build\lib\chimerax\io
22056running bdist_wheel
22057installing to build\bdist.win-amd64\wheel
22058running install
22059running install_lib
22060creating build\bdist.win-amd64\wheel
22061creating build\bdist.win-amd64\wheel\chimerax
22062creating build\bdist.win-amd64\wheel\chimerax\io
22063copying build\lib\chimerax\io\compression.py -> build\bdist.win-amd64\wheel\.\chimerax\io
22064copying build\lib\chimerax\io\io.py -> build\bdist.win-amd64\wheel\.\chimerax\io
22065copying build\lib\chimerax\io\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\io
22066running install_egg_info
22067running egg_info
22068creating ChimeraX_IO.egg-info
22069writing ChimeraX_IO.egg-info\PKG-INFO
22070writing dependency_links to ChimeraX_IO.egg-info\dependency_links.txt
22071writing requirements to ChimeraX_IO.egg-info\requires.txt
22072writing top-level names to ChimeraX_IO.egg-info\top_level.txt
22073writing manifest file 'ChimeraX_IO.egg-info\SOURCES.txt'
22074reading manifest file 'ChimeraX_IO.egg-info\SOURCES.txt'
22075writing manifest file 'ChimeraX_IO.egg-info\SOURCES.txt'
22076Copying ChimeraX_IO.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_IO-1.0.4-py3.11.egg-info
22077running install_scripts
22078creating build\bdist.win-amd64\wheel\chimerax_io-1.0.4.dist-info\WHEEL
22079creating 'dist\chimerax_io-1.0.4-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22080adding 'chimerax/io/__init__.py'
22081adding 'chimerax/io/compression.py'
22082adding 'chimerax/io/io.py'
22083adding 'chimerax_io-1.0.4.dist-info/METADATA'
22084adding 'chimerax_io-1.0.4.dist-info/WHEEL'
22085adding 'chimerax_io-1.0.4.dist-info/top_level.txt'
22086adding 'chimerax_io-1.0.4.dist-info/RECORD'
22087removing build\bdist.win-amd64\wheel
22088Distribution is in .\dist\ChimeraX_IO-1.0.4-py3-none-any.whl
22089INFO:
22090
22091make sync
22092make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/io'
22093cp -av dist/*.whl ../../../build/sync
22094'dist/chimerax_io-1.0.4-py3-none-any.whl' -> '../../../build/sync/chimerax_io-1.0.4-py3-none-any.whl'
22095make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/io'
22096make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/io'
22097make -C label build
22098make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/label'
22099if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22100 echo "missing ChimeraX application's python"; exit 1; \
22101else \
22102 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22103fi
22104INFO:
22105Executing: devel build . exit true
22106C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22107!!
22108
22109 ********************************************************************************
22110 Please consider removing the following classifiers in favor of a SPDX license expression:
22111
22112 License :: Free for non-commercial use
22113
22114 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22115 ********************************************************************************
22116
22117!!
22118 self._finalize_license_expression()
22119running build
22120running build_py
22121creating build\lib\chimerax\label
22122copying src\arrows.py -> build\lib\chimerax\label
22123copying src\label2d.py -> build\lib\chimerax\label
22124copying src\label3d.py -> build\lib\chimerax\label
22125copying src\mouselabel.py -> build\lib\chimerax\label
22126copying src\movelabel.py -> build\lib\chimerax\label
22127copying src\scalebar.py -> build\lib\chimerax\label
22128copying src\scalebar_gui.py -> build\lib\chimerax\label
22129copying src\settings.py -> build\lib\chimerax\label
22130copying src\__init__.py -> build\lib\chimerax\label
22131copying src\label.png -> build\lib\chimerax\label
22132copying src\movelabel.png -> build\lib\chimerax\label
22133running bdist_wheel
22134installing to build\bdist.win-amd64\wheel
22135running install
22136running install_lib
22137creating build\bdist.win-amd64\wheel
22138creating build\bdist.win-amd64\wheel\chimerax
22139creating build\bdist.win-amd64\wheel\chimerax\label
22140copying build\lib\chimerax\label\arrows.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22141copying build\lib\chimerax\label\label.png -> build\bdist.win-amd64\wheel\.\chimerax\label
22142copying build\lib\chimerax\label\label2d.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22143copying build\lib\chimerax\label\label3d.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22144copying build\lib\chimerax\label\mouselabel.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22145copying build\lib\chimerax\label\movelabel.png -> build\bdist.win-amd64\wheel\.\chimerax\label
22146copying build\lib\chimerax\label\movelabel.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22147copying build\lib\chimerax\label\scalebar.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22148copying build\lib\chimerax\label\scalebar_gui.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22149copying build\lib\chimerax\label\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22150copying build\lib\chimerax\label\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\label
22151running install_egg_info
22152running egg_info
22153creating ChimeraX_Label.egg-info
22154writing ChimeraX_Label.egg-info\PKG-INFO
22155writing dependency_links to ChimeraX_Label.egg-info\dependency_links.txt
22156writing requirements to ChimeraX_Label.egg-info\requires.txt
22157writing top-level names to ChimeraX_Label.egg-info\top_level.txt
22158writing manifest file 'ChimeraX_Label.egg-info\SOURCES.txt'
22159reading manifest file 'ChimeraX_Label.egg-info\SOURCES.txt'
22160writing manifest file 'ChimeraX_Label.egg-info\SOURCES.txt'
22161Copying ChimeraX_Label.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Label-1.2-py3.11.egg-info
22162running install_scripts
22163creating build\bdist.win-amd64\wheel\chimerax_label-1.2.dist-info\WHEEL
22164creating 'dist\chimerax_label-1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22165adding 'chimerax/label/__init__.py'
22166adding 'chimerax/label/arrows.py'
22167adding 'chimerax/label/label.png'
22168adding 'chimerax/label/label2d.py'
22169adding 'chimerax/label/label3d.py'
22170adding 'chimerax/label/mouselabel.py'
22171adding 'chimerax/label/movelabel.png'
22172adding 'chimerax/label/movelabel.py'
22173adding 'chimerax/label/scalebar.py'
22174adding 'chimerax/label/scalebar_gui.py'
22175adding 'chimerax/label/settings.py'
22176adding 'chimerax_label-1.2.dist-info/METADATA'
22177adding 'chimerax_label-1.2.dist-info/WHEEL'
22178adding 'chimerax_label-1.2.dist-info/top_level.txt'
22179adding 'chimerax_label-1.2.dist-info/RECORD'
22180removing build\bdist.win-amd64\wheel
22181Distribution is in .\dist\ChimeraX_Label-1.2-py3-none-any.whl
22182INFO:
22183
22184make sync
22185make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/label'
22186cp -av dist/*.whl ../../../build/sync
22187'dist/chimerax_label-1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_label-1.2-py3-none-any.whl'
22188make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/label'
22189make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/label'
22190make -C iupac build
22191make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
22192if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22193 echo "missing ChimeraX application's python"; exit 1; \
22194else \
22195 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22196fi
22197INFO:
22198Executing: devel build . exit true
22199C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22200!!
22201
22202 ********************************************************************************
22203 Please consider removing the following classifiers in favor of a SPDX license expression:
22204
22205 License :: Free for non-commercial use
22206
22207 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22208 ********************************************************************************
22209
22210!!
22211 self._finalize_license_expression()
22212running build
22213running build_py
22214creating build\lib\chimerax\iupac
22215copying src\build_ui.py -> build\lib\chimerax\iupac
22216copying src\iupac.py -> build\lib\chimerax\iupac
22217copying src\__init__.py -> build\lib\chimerax\iupac
22218running bdist_wheel
22219installing to build\bdist.win-amd64\wheel
22220running install
22221running install_lib
22222creating build\bdist.win-amd64\wheel
22223creating build\bdist.win-amd64\wheel\chimerax
22224creating build\bdist.win-amd64\wheel\chimerax\iupac
22225copying build\lib\chimerax\iupac\build_ui.py -> build\bdist.win-amd64\wheel\.\chimerax\iupac
22226copying build\lib\chimerax\iupac\iupac.py -> build\bdist.win-amd64\wheel\.\chimerax\iupac
22227copying build\lib\chimerax\iupac\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\iupac
22228running install_egg_info
22229running egg_info
22230creating ChimeraX_IUPAC.egg-info
22231writing ChimeraX_IUPAC.egg-info\PKG-INFO
22232writing dependency_links to ChimeraX_IUPAC.egg-info\dependency_links.txt
22233writing requirements to ChimeraX_IUPAC.egg-info\requires.txt
22234writing top-level names to ChimeraX_IUPAC.egg-info\top_level.txt
22235writing manifest file 'ChimeraX_IUPAC.egg-info\SOURCES.txt'
22236reading manifest file 'ChimeraX_IUPAC.egg-info\SOURCES.txt'
22237writing manifest file 'ChimeraX_IUPAC.egg-info\SOURCES.txt'
22238Copying ChimeraX_IUPAC.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_IUPAC-1.0-py3.11.egg-info
22239running install_scripts
22240creating build\bdist.win-amd64\wheel\chimerax_iupac-1.0.dist-info\WHEEL
22241creating 'dist\chimerax_iupac-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22242adding 'chimerax/iupac/__init__.py'
22243adding 'chimerax/iupac/build_ui.py'
22244adding 'chimerax/iupac/iupac.py'
22245adding 'chimerax_iupac-1.0.dist-info/METADATA'
22246adding 'chimerax_iupac-1.0.dist-info/WHEEL'
22247adding 'chimerax_iupac-1.0.dist-info/top_level.txt'
22248adding 'chimerax_iupac-1.0.dist-info/RECORD'
22249removing build\bdist.win-amd64\wheel
22250Distribution is in .\dist\ChimeraX_IUPAC-1.0-py3-none-any.whl
22251INFO:
22252
22253make sync
22254make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
22255cp -av dist/*.whl ../../../build/sync
22256'dist/chimerax_iupac-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_iupac-1.0-py3-none-any.whl'
22257make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
22258make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/iupac'
22259make -C kvfinder build
22260make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
22261if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22262 echo "missing ChimeraX application's python"; exit 1; \
22263else \
22264 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22265fi
22266INFO:
22267Executing: devel build . exit true
22268C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22269!!
22270
22271 ********************************************************************************
22272 Please consider removing the following classifiers in favor of a SPDX license expression:
22273
22274 License :: Free for non-commercial use
22275
22276 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22277 ********************************************************************************
22278
22279!!
22280 self._finalize_license_expression()
22281running build
22282running build_py
22283creating build\lib\chimerax\kvfinder
22284copying src\cmd.py -> build\lib\chimerax\kvfinder
22285copying src\prep.py -> build\lib\chimerax\kvfinder
22286copying src\tool.py -> build\lib\chimerax\kvfinder
22287copying src\__init__.py -> build\lib\chimerax\kvfinder
22288running bdist_wheel
22289installing to build\bdist.win-amd64\wheel
22290running install
22291running install_lib
22292creating build\bdist.win-amd64\wheel
22293creating build\bdist.win-amd64\wheel\chimerax
22294creating build\bdist.win-amd64\wheel\chimerax\kvfinder
22295copying build\lib\chimerax\kvfinder\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\kvfinder
22296copying build\lib\chimerax\kvfinder\prep.py -> build\bdist.win-amd64\wheel\.\chimerax\kvfinder
22297copying build\lib\chimerax\kvfinder\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\kvfinder
22298copying build\lib\chimerax\kvfinder\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\kvfinder
22299running install_egg_info
22300running egg_info
22301creating ChimeraX_KVFinder.egg-info
22302writing ChimeraX_KVFinder.egg-info\PKG-INFO
22303writing dependency_links to ChimeraX_KVFinder.egg-info\dependency_links.txt
22304writing requirements to ChimeraX_KVFinder.egg-info\requires.txt
22305writing top-level names to ChimeraX_KVFinder.egg-info\top_level.txt
22306writing manifest file 'ChimeraX_KVFinder.egg-info\SOURCES.txt'
22307reading manifest file 'ChimeraX_KVFinder.egg-info\SOURCES.txt'
22308writing manifest file 'ChimeraX_KVFinder.egg-info\SOURCES.txt'
22309Copying ChimeraX_KVFinder.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_KVFinder-1.7.1-py3.11.egg-info
22310running install_scripts
22311creating build\bdist.win-amd64\wheel\chimerax_kvfinder-1.7.1.dist-info\WHEEL
22312creating 'dist\chimerax_kvfinder-1.7.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22313adding 'chimerax/kvfinder/__init__.py'
22314adding 'chimerax/kvfinder/cmd.py'
22315adding 'chimerax/kvfinder/prep.py'
22316adding 'chimerax/kvfinder/tool.py'
22317adding 'chimerax_kvfinder-1.7.1.dist-info/METADATA'
22318adding 'chimerax_kvfinder-1.7.1.dist-info/WHEEL'
22319adding 'chimerax_kvfinder-1.7.1.dist-info/top_level.txt'
22320adding 'chimerax_kvfinder-1.7.1.dist-info/RECORD'
22321removing build\bdist.win-amd64\wheel
22322Distribution is in .\dist\ChimeraX_KVFinder-1.7.1-py3-none-any.whl
22323INFO:
22324
22325make sync
22326make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
22327cp -av dist/*.whl ../../../build/sync
22328'dist/chimerax_kvfinder-1.7.1-py3-none-any.whl' -> '../../../build/sync/chimerax_kvfinder-1.7.1-py3-none-any.whl'
22329make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
22330make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/kvfinder'
22331make -C list_info build
22332make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
22333if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22334 echo "missing ChimeraX application's python"; exit 1; \
22335else \
22336 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22337fi
22338INFO:
22339Executing: devel build . exit true
22340C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22341!!
22342
22343 ********************************************************************************
22344 Please consider removing the following classifiers in favor of a SPDX license expression:
22345
22346 License :: Free for non-commercial use
22347
22348 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22349 ********************************************************************************
22350
22351!!
22352 self._finalize_license_expression()
22353running build
22354running build_py
22355creating build\lib\chimerax\list_info
22356copying src\cmd.py -> build\lib\chimerax\list_info
22357copying src\util.py -> build\lib\chimerax\list_info
22358copying src\__init__.py -> build\lib\chimerax\list_info
22359running bdist_wheel
22360installing to build\bdist.win-amd64\wheel
22361running install
22362running install_lib
22363creating build\bdist.win-amd64\wheel
22364creating build\bdist.win-amd64\wheel\chimerax
22365creating build\bdist.win-amd64\wheel\chimerax\list_info
22366copying build\lib\chimerax\list_info\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\list_info
22367copying build\lib\chimerax\list_info\util.py -> build\bdist.win-amd64\wheel\.\chimerax\list_info
22368copying build\lib\chimerax\list_info\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\list_info
22369running install_egg_info
22370running egg_info
22371creating ChimeraX_ListInfo.egg-info
22372writing ChimeraX_ListInfo.egg-info\PKG-INFO
22373writing dependency_links to ChimeraX_ListInfo.egg-info\dependency_links.txt
22374writing requirements to ChimeraX_ListInfo.egg-info\requires.txt
22375writing top-level names to ChimeraX_ListInfo.egg-info\top_level.txt
22376writing manifest file 'ChimeraX_ListInfo.egg-info\SOURCES.txt'
22377reading manifest file 'ChimeraX_ListInfo.egg-info\SOURCES.txt'
22378writing manifest file 'ChimeraX_ListInfo.egg-info\SOURCES.txt'
22379Copying ChimeraX_ListInfo.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ListInfo-1.2.2-py3.11.egg-info
22380running install_scripts
22381creating build\bdist.win-amd64\wheel\chimerax_listinfo-1.2.2.dist-info\WHEEL
22382creating 'dist\chimerax_listinfo-1.2.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22383adding 'chimerax/list_info/__init__.py'
22384adding 'chimerax/list_info/cmd.py'
22385adding 'chimerax/list_info/util.py'
22386adding 'chimerax_listinfo-1.2.2.dist-info/METADATA'
22387adding 'chimerax_listinfo-1.2.2.dist-info/WHEEL'
22388adding 'chimerax_listinfo-1.2.2.dist-info/top_level.txt'
22389adding 'chimerax_listinfo-1.2.2.dist-info/RECORD'
22390removing build\bdist.win-amd64\wheel
22391Distribution is in .\dist\ChimeraX_ListInfo-1.2.2-py3-none-any.whl
22392INFO:
22393
22394make sync
22395make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
22396cp -av dist/*.whl ../../../build/sync
22397'dist/chimerax_listinfo-1.2.2-py3-none-any.whl' -> '../../../build/sync/chimerax_listinfo-1.2.2-py3-none-any.whl'
22398make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
22399make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/list_info'
22400make -C log build
22401make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/log'
22402if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22403 echo "missing ChimeraX application's python"; exit 1; \
22404else \
22405 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22406fi
22407INFO:
22408Executing: devel build . exit true
22409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22410!!
22411
22412 ********************************************************************************
22413 Please consider removing the following classifiers in favor of a SPDX license expression:
22414
22415 License :: Free for non-commercial use
22416
22417 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22418 ********************************************************************************
22419
22420!!
22421 self._finalize_license_expression()
22422running build
22423running build_py
22424creating build\lib\chimerax\log
22425copying src\cmd.py -> build\lib\chimerax\log
22426copying src\settings.py -> build\lib\chimerax\log
22427copying src\tool.py -> build\lib\chimerax\log
22428copying src\__init__.py -> build\lib\chimerax\log
22429running bdist_wheel
22430installing to build\bdist.win-amd64\wheel
22431running install
22432running install_lib
22433creating build\bdist.win-amd64\wheel
22434creating build\bdist.win-amd64\wheel\chimerax
22435creating build\bdist.win-amd64\wheel\chimerax\log
22436copying build\lib\chimerax\log\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\log
22437copying build\lib\chimerax\log\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\log
22438copying build\lib\chimerax\log\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\log
22439copying build\lib\chimerax\log\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\log
22440running install_egg_info
22441running egg_info
22442creating ChimeraX_Log.egg-info
22443writing ChimeraX_Log.egg-info\PKG-INFO
22444writing dependency_links to ChimeraX_Log.egg-info\dependency_links.txt
22445writing requirements to ChimeraX_Log.egg-info\requires.txt
22446writing top-level names to ChimeraX_Log.egg-info\top_level.txt
22447writing manifest file 'ChimeraX_Log.egg-info\SOURCES.txt'
22448reading manifest file 'ChimeraX_Log.egg-info\SOURCES.txt'
22449writing manifest file 'ChimeraX_Log.egg-info\SOURCES.txt'
22450Copying ChimeraX_Log.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Log-1.2.1-py3.11.egg-info
22451running install_scripts
22452creating build\bdist.win-amd64\wheel\chimerax_log-1.2.1.dist-info\WHEEL
22453creating 'dist\chimerax_log-1.2.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22454adding 'chimerax/log/__init__.py'
22455adding 'chimerax/log/cmd.py'
22456adding 'chimerax/log/settings.py'
22457adding 'chimerax/log/tool.py'
22458adding 'chimerax_log-1.2.1.dist-info/METADATA'
22459adding 'chimerax_log-1.2.1.dist-info/WHEEL'
22460adding 'chimerax_log-1.2.1.dist-info/top_level.txt'
22461adding 'chimerax_log-1.2.1.dist-info/RECORD'
22462removing build\bdist.win-amd64\wheel
22463Distribution is in .\dist\ChimeraX_Log-1.2.1-py3-none-any.whl
22464INFO:
22465
22466make sync
22467make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/log'
22468cp -av dist/*.whl ../../../build/sync
22469'dist/chimerax_log-1.2.1-py3-none-any.whl' -> '../../../build/sync/chimerax_log-1.2.1-py3-none-any.whl'
22470make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/log'
22471make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/log'
22472make -C looking_glass build
22473make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
22474if [ -z "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe" ]; then \
22475 echo "missing ChimeraX application's python"; exit 1; \
22476else \
22477 PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22478fi
22479INFO:
22480Executing: devel build . exit true
22481C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22482!!
22483
22484 ********************************************************************************
22485 Please consider removing the following classifiers in favor of a SPDX license expression:
22486
22487 License :: Free for non-commercial use
22488
22489 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22490 ********************************************************************************
22491
22492!!
22493 self._finalize_license_expression()
22494running build
22495running build_py
22496creating build\lib\chimerax\looking_glass
22497copying src\holoplay.py -> build\lib\chimerax\looking_glass
22498copying src\lookingglass.py -> build\lib\chimerax\looking_glass
22499copying src\__init__.py -> build\lib\chimerax\looking_glass
22500copying src\vertex_shader.txt -> build\lib\chimerax\looking_glass
22501copying src\fragment_shader.txt -> build\lib\chimerax\looking_glass
22502running bdist_wheel
22503installing to build\bdist.win-amd64\wheel
22504running install
22505running install_lib
22506creating build\bdist.win-amd64\wheel
22507creating build\bdist.win-amd64\wheel\chimerax
22508creating build\bdist.win-amd64\wheel\chimerax\looking_glass
22509copying build\lib\chimerax\looking_glass\fragment_shader.txt -> build\bdist.win-amd64\wheel\.\chimerax\looking_glass
22510copying build\lib\chimerax\looking_glass\holoplay.py -> build\bdist.win-amd64\wheel\.\chimerax\looking_glass
22511copying build\lib\chimerax\looking_glass\lookingglass.py -> build\bdist.win-amd64\wheel\.\chimerax\looking_glass
22512copying build\lib\chimerax\looking_glass\vertex_shader.txt -> build\bdist.win-amd64\wheel\.\chimerax\looking_glass
22513copying build\lib\chimerax\looking_glass\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\looking_glass
22514running install_egg_info
22515running egg_info
22516creating ChimeraX_LookingGlass.egg-info
22517writing ChimeraX_LookingGlass.egg-info\PKG-INFO
22518writing dependency_links to ChimeraX_LookingGlass.egg-info\dependency_links.txt
22519writing requirements to ChimeraX_LookingGlass.egg-info\requires.txt
22520writing top-level names to ChimeraX_LookingGlass.egg-info\top_level.txt
22521writing manifest file 'ChimeraX_LookingGlass.egg-info\SOURCES.txt'
22522reading manifest file 'ChimeraX_LookingGlass.egg-info\SOURCES.txt'
22523writing manifest file 'ChimeraX_LookingGlass.egg-info\SOURCES.txt'
22524Copying ChimeraX_LookingGlass.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_LookingGlass-1.1-py3.11.egg-info
22525running install_scripts
22526creating build\bdist.win-amd64\wheel\chimerax_lookingglass-1.1.dist-info\WHEEL
22527creating 'dist\chimerax_lookingglass-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22528adding 'chimerax/looking_glass/__init__.py'
22529adding 'chimerax/looking_glass/fragment_shader.txt'
22530adding 'chimerax/looking_glass/holoplay.py'
22531adding 'chimerax/looking_glass/lookingglass.py'
22532adding 'chimerax/looking_glass/vertex_shader.txt'
22533adding 'chimerax_lookingglass-1.1.dist-info/METADATA'
22534adding 'chimerax_lookingglass-1.1.dist-info/WHEEL'
22535adding 'chimerax_lookingglass-1.1.dist-info/top_level.txt'
22536adding 'chimerax_lookingglass-1.1.dist-info/RECORD'
22537removing build\bdist.win-amd64\wheel
22538Distribution is in .\dist\ChimeraX_LookingGlass-1.1-py3-none-any.whl
22539INFO:
22540
22541make sync
22542make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
22543cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync
22544'dist/chimerax_lookingglass-1.1-py3-none-any.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_lookingglass-1.1-py3-none-any.whl'
22545make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
22546make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/looking_glass'
22547make -C maestro build
22548make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
22549if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22550 echo "missing ChimeraX application's python"; exit 1; \
22551else \
22552 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22553fi
22554INFO:
22555Executing: devel build . exit true
22556C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22557!!
22558
22559 ********************************************************************************
22560 Please consider removing the following classifiers in favor of a SPDX license expression:
22561
22562 License :: Free for non-commercial use
22563
22564 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22565 ********************************************************************************
22566
22567!!
22568 self._finalize_license_expression()
22569running build
22570running build_py
22571creating build\lib\chimerax\maestro
22572copying src\io.py -> build\lib\chimerax\maestro
22573copying src\maestro.py -> build\lib\chimerax\maestro
22574copying src\__init__.py -> build\lib\chimerax\maestro
22575running bdist_wheel
22576installing to build\bdist.win-amd64\wheel
22577running install
22578running install_lib
22579creating build\bdist.win-amd64\wheel
22580creating build\bdist.win-amd64\wheel\chimerax
22581creating build\bdist.win-amd64\wheel\chimerax\maestro
22582copying build\lib\chimerax\maestro\io.py -> build\bdist.win-amd64\wheel\.\chimerax\maestro
22583copying build\lib\chimerax\maestro\maestro.py -> build\bdist.win-amd64\wheel\.\chimerax\maestro
22584copying build\lib\chimerax\maestro\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\maestro
22585running install_egg_info
22586running egg_info
22587creating ChimeraX_Maestro.egg-info
22588writing ChimeraX_Maestro.egg-info\PKG-INFO
22589writing dependency_links to ChimeraX_Maestro.egg-info\dependency_links.txt
22590writing requirements to ChimeraX_Maestro.egg-info\requires.txt
22591writing top-level names to ChimeraX_Maestro.egg-info\top_level.txt
22592writing manifest file 'ChimeraX_Maestro.egg-info\SOURCES.txt'
22593reading manifest file 'ChimeraX_Maestro.egg-info\SOURCES.txt'
22594writing manifest file 'ChimeraX_Maestro.egg-info\SOURCES.txt'
22595Copying ChimeraX_Maestro.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Maestro-1.9.2-py3.11.egg-info
22596running install_scripts
22597creating build\bdist.win-amd64\wheel\chimerax_maestro-1.9.2.dist-info\WHEEL
22598creating 'dist\chimerax_maestro-1.9.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
22599adding 'chimerax/maestro/__init__.py'
22600adding 'chimerax/maestro/io.py'
22601adding 'chimerax/maestro/maestro.py'
22602adding 'chimerax_maestro-1.9.2.dist-info/METADATA'
22603adding 'chimerax_maestro-1.9.2.dist-info/WHEEL'
22604adding 'chimerax_maestro-1.9.2.dist-info/top_level.txt'
22605adding 'chimerax_maestro-1.9.2.dist-info/RECORD'
22606removing build\bdist.win-amd64\wheel
22607Distribution is in .\dist\ChimeraX_Maestro-1.9.2-py3-none-any.whl
22608INFO:
22609
22610make sync
22611make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
22612cp -av dist/*.whl ../../../build/sync
22613'dist/chimerax_maestro-1.9.2-py3-none-any.whl' -> '../../../build/sync/chimerax_maestro-1.9.2-py3-none-any.whl'
22614make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
22615make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/maestro'
22616make -C map build
22617make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map'
22618if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
22619 echo "missing ChimeraX application's python"; exit 1; \
22620else \
22621 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
22622fi
22623INFO:
22624Executing: devel build . exit true
22625C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
22626!!
22627
22628 ********************************************************************************
22629 Please consider removing the following classifiers in favor of a SPDX license expression:
22630
22631 License :: Free for non-commercial use
22632
22633 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
22634 ********************************************************************************
22635
22636!!
22637 self._finalize_license_expression()
22638running build
22639running build_py
22640creating build\lib.win-amd64-cpython-311\chimerax\map
22641copying src\channels.py -> build\lib.win-amd64-cpython-311\chimerax\map
22642copying src\coords_gui.py -> build\lib.win-amd64-cpython-311\chimerax\map
22643copying src\defaultsettings.py -> build\lib.win-amd64-cpython-311\chimerax\map
22644copying src\eds_fetch.py -> build\lib.win-amd64-cpython-311\chimerax\map
22645copying src\emdb_fetch.py -> build\lib.win-amd64-cpython-311\chimerax\map
22646copying src\histogram.py -> build\lib.win-amd64-cpython-311\chimerax\map
22647copying src\image3d.py -> build\lib.win-amd64-cpython-311\chimerax\map
22648copying src\mapargs.py -> build\lib.win-amd64-cpython-311\chimerax\map
22649copying src\measure.py -> build\lib.win-amd64-cpython-311\chimerax\map
22650copying src\molmap.py -> build\lib.win-amd64-cpython-311\chimerax\map
22651copying src\mouselevel.py -> build\lib.win-amd64-cpython-311\chimerax\map
22652copying src\moveplanes.py -> build\lib.win-amd64-cpython-311\chimerax\map
22653copying src\redo_fetch.py -> build\lib.win-amd64-cpython-311\chimerax\map
22654copying src\session.py -> build\lib.win-amd64-cpython-311\chimerax\map
22655copying src\slice.py -> build\lib.win-amd64-cpython-311\chimerax\map
22656copying src\tiltedslab.py -> build\lib.win-amd64-cpython-311\chimerax\map
22657copying src\volume.py -> build\lib.win-amd64-cpython-311\chimerax\map
22658copying src\volumecommand.py -> build\lib.win-amd64-cpython-311\chimerax\map
22659copying src\volume_viewer.py -> build\lib.win-amd64-cpython-311\chimerax\map
22660copying src\windowing.py -> build\lib.win-amd64-cpython-311\chimerax\map
22661copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\map
22662creating build\lib.win-amd64-cpython-311\chimerax\map\colortables
22663copying src\colortables\colortables.py -> build\lib.win-amd64-cpython-311\chimerax\map\colortables
22664copying src\colortables\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\map\colortables
22665creating build\lib.win-amd64-cpython-311\chimerax\map\icons
22666copying src\icons\contour.png -> build\lib.win-amd64-cpython-311\chimerax\map\icons
22667copying src\icons\crop.png -> build\lib.win-amd64-cpython-311\chimerax\map\icons
22668copying src\icons\moveplanes.png -> build\lib.win-amd64-cpython-311\chimerax\map\icons
22669copying src\icons\rotateslab.png -> build\lib.win-amd64-cpython-311\chimerax\map\icons
22670copying src\icons\windowing.png -> build\lib.win-amd64-cpython-311\chimerax\map\icons
22671creating build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22672copying src\colortables\presets\Airways II.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22673copying src\colortables\presets\Airways.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22674copying src\colortables\presets\Black & White.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22675copying src\colortables\presets\Bone + Skin II.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22676copying src\colortables\presets\Bone + Skin.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22677copying src\colortables\presets\Dark Bone.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22678copying src\colortables\presets\Glossy II.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22679copying src\colortables\presets\Glossy.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22680copying src\colortables\presets\Gold Bone.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22681copying src\colortables\presets\High Contrast.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22682copying src\colortables\presets\Low Contrast.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22683copying src\colortables\presets\Mid Contrast.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22684copying src\colortables\presets\No Shading.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22685copying src\colortables\presets\Pencil.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22686copying src\colortables\presets\Red on White.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22687copying src\colortables\presets\Skin On Blue II.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22688copying src\colortables\presets\Skin On Blue.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22689copying src\colortables\presets\Soft + Skin II.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22690copying src\colortables\presets\Soft + Skin III.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22691copying src\colortables\presets\Soft + Skin.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22692copying src\colortables\presets\Soft On Blue.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22693copying src\colortables\presets\Soft on White.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22694copying src\colortables\presets\Soft.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22695copying src\colortables\presets\Standard.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22696copying src\colortables\presets\Vascular II.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22697copying src\colortables\presets\Vascular III.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22698copying src\colortables\presets\Vascular IV.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22699copying src\colortables\presets\Vascular.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22700copying src\colortables\presets\Yellow Bone.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets
22701creating build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22702copying src\colortables\cluts\BlackBody.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22703copying src\colortables\cluts\Flow.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22704copying src\colortables\cluts\French.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22705copying src\colortables\cluts\GEcolor.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22706copying src\colortables\cluts\GrayRainbow.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22707copying src\colortables\cluts\HotGreen.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22708copying src\colortables\cluts\HotIron.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22709copying src\colortables\cluts\HotMetal.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22710copying src\colortables\cluts\Hue1.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22711copying src\colortables\cluts\Hue2.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22712copying src\colortables\cluts\ired.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22713copying src\colortables\cluts\Jet.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22714copying src\colortables\cluts\NIH.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22715copying src\colortables\cluts\Perfusion.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22716copying src\colortables\cluts\PPU Inferno.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22717copying src\colortables\cluts\PPU Magma.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22718copying src\colortables\cluts\PPU Plasma.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22719copying src\colortables\cluts\PPU Viridis.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22720copying src\colortables\cluts\Rainbow.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22721copying src\colortables\cluts\Rainbow2.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22722copying src\colortables\cluts\Rainbow3.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22723copying src\colortables\cluts\Ratio.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22724copying src\colortables\cluts\Spectrum.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22725copying src\colortables\cluts\Stern.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22726copying src\colortables\cluts\UCLA.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22727copying src\colortables\cluts\VR Bones.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22728copying src\colortables\cluts\VR Muscles-Bones.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22729copying src\colortables\cluts\VR Red Vessels.plist -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22730copying src\colortables\cluts\CT_Bones.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22731copying src\colortables\cluts\CT_Kidneys.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22732copying src\colortables\cluts\CT_Liver.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22733copying src\colortables\cluts\CT_Lungs.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22734copying src\colortables\cluts\CT_Muscles.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22735copying src\colortables\cluts\CT_Skin.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22736copying src\colortables\cluts\CT_Soft_Tissue.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22737copying src\colortables\cluts\CT_Vessels.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22738copying src\colortables\cluts\CT_w_Contrast.clut -> build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts
22739running build_ext
22740building 'chimerax.map._map' extension
22741creating build\temp.win-amd64-cpython-311\Release\_map
22742"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/boxcut.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\boxcut.obj
22743boxcut.cpp
22744_map/boxcut.cpp(343): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
22745_map/boxcut.cpp(343): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
22746"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/colors.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\colors.obj
22747colors.cpp
22748"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/combine.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\combine.obj
22749combine.cpp
22750"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/contourdata.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\contourdata.obj
22751contourdata.cpp
22752"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/contourpy.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\contourpy.obj
22753contourpy.cpp
22754C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(225): warning C4244: 'argument': conversion from 'Contour_Calculation::CIndex' to 'Contour_Calculation::BIndex', possible loss of data
22755C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(230): warning C4244: 'argument': conversion from 'GIndex' to 'Contour_Calculation::BIndex', possible loss of data
22756C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(243): warning C4244: 'argument': conversion from 'Contour_Calculation::CIndex' to 'Contour_Calculation::BIndex', possible loss of data
22757C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(686): warning C4244: 'argument': conversion from 'int64_t' to 'Contour_Calculation::BIndex', possible loss of data
22758C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(682): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::normals(float *)'
22759 with
22760 [
22761 Data_Type=char
22762 ]
22763C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(724): note: see reference to class template instantiation 'Contour_Calculation::CSurface<Data_Type>' being compiled
22764 with
22765 [
22766 Data_Type=char
22767 ]
22768_map/contourpy.cpp(52): note: see reference to function template instantiation 'Contour_Calculation::Contour_Surface *Contour_Calculation::surface<T>(const Data_Type *,const AIndex [],const GIndex [],float,bool)' being compiled
22769 with
22770 [
22771 T=char,
22772 Data_Type=char
22773 ]
22774_map/contourpy.cpp(76): note: see reference to function template instantiation 'void contour_surface<char>(const Reference_Counted_Array::Array<char> &,float,bool,Contour_Calculation::Contour_Surface **)' being compiled
22775C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(686): warning C4244: 'argument': conversion from 'int64_t' to 'Contour_Calculation::BIndex', possible loss of data
22776C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(686): warning C4244: 'argument': conversion from 'int64_t' to 'Contour_Calculation::BIndex', possible loss of data
22777C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(689): warning C4244: '=': conversion from 'int' to 'float', possible loss of data
22778C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(710): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
22779C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(706): warning C4244: '=': conversion from 'Data_Type' to 'float', possible loss of data
22780 with
22781 [
22782 Data_Type=double
22783 ]
22784C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(641): warning C4244: 'argument': conversion from 'Contour_Calculation::CIndex' to 'Contour_Calculation::BIndex', possible loss of data
22785C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(632): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::make_triangles(Contour_Calculation::Grid_Cell_List &,AIndex)'
22786 with
22787 [
22788 Data_Type=char
22789 ]
22790C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(340): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::make_triangles(Contour_Calculation::Grid_Cell_List &,AIndex)' being compiled
22791 with
22792 [
22793 Data_Type=char
22794 ]
22795C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(682): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::normals(float *)'
22796 with
22797 [
22798 Data_Type=char
22799 ]
22800C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(389): warning C4244: 'initializing': conversion from 'Data_Type' to 'float', possible loss of data
22801 with
22802 [
22803 Data_Type=double
22804 ]
22805C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(382): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::mark_interior_edge_cuts(AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22806 with
22807 [
22808 Data_Type=double
22809 ]
22810C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(365): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::mark_interior_edge_cuts(AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22811 with
22812 [
22813 Data_Type=double
22814 ]
22815C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(352): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::mark_plane_edge_cuts(Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &,AIndex)'
22816 with
22817 [
22818 Data_Type=double
22819 ]
22820C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(337): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::mark_plane_edge_cuts(Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &,AIndex)' being compiled
22821 with
22822 [
22823 Data_Type=double
22824 ]
22825C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(423): warning C4244: 'initializing': conversion from 'Data_Type' to 'float', possible loss of data
22826 with
22827 [
22828 Data_Type=double
22829 ]
22830C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(419): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::mark_boundary_edge_cuts(AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22831 with
22832 [
22833 Data_Type=double
22834 ]
22835C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(359): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::mark_boundary_edge_cuts(AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22836 with
22837 [
22838 Data_Type=double
22839 ]
22840C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(494): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22841C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(493): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::add_vertex_axis_0(AIndex,AIndex,AIndex,float,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22842 with
22843 [
22844 Data_Type=char
22845 ]
22846C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(396): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::add_vertex_axis_0(AIndex,AIndex,AIndex,float,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22847 with
22848 [
22849 Data_Type=char
22850 ]
22851C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(382): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::mark_interior_edge_cuts(AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22852 with
22853 [
22854 Data_Type=char
22855 ]
22856C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(365): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::mark_interior_edge_cuts(AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22857 with
22858 [
22859 Data_Type=char
22860 ]
22861C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(352): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::mark_plane_edge_cuts(Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &,AIndex)'
22862 with
22863 [
22864 Data_Type=char
22865 ]
22866C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(337): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::mark_plane_edge_cuts(Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &,AIndex)' being compiled
22867 with
22868 [
22869 Data_Type=char
22870 ]
22871C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(494): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22872C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(508): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(507): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::add_vertex_axis_1(AIndex,AIndex,AIndex,float,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22874 with
22875 [
22876 Data_Type=char
22877 ]
22878C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(400): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::add_vertex_axis_1(AIndex,AIndex,AIndex,float,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22879 with
22880 [
22881 Data_Type=char
22882 ]
22883C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(508): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22884C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(522): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22885C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(521): note: while compiling class template member function 'void Contour_Calculation::CSurface<Data_Type>::add_vertex_axis_2(AIndex,AIndex,float,Contour_Calculation::Grid_Cell_List &)'
22886 with
22887 [
22888 Data_Type=char
22889 ]
22890C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(404): note: see reference to function template instantiation 'void Contour_Calculation::CSurface<Data_Type>::add_vertex_axis_2(AIndex,AIndex,float,Contour_Calculation::Grid_Cell_List &)' being compiled
22891 with
22892 [
22893 Data_Type=char
22894 ]
22895C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(522): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22896C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(538): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22897C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(536): note: while compiling class template member function 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_l0(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22898 with
22899 [
22900 Data_Type=char
22901 ]
22902C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(439): note: see reference to function template instantiation 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_l0(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22903 with
22904 [
22905 Data_Type=char
22906 ]
22907C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(538): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22908C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(538): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22909C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(554): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22910C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(552): note: while compiling class template member function 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_r0(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22911 with
22912 [
22913 Data_Type=char
22914 ]
22915C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(448): note: see reference to function template instantiation 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_r0(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22916 with
22917 [
22918 Data_Type=char
22919 ]
22920C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(554): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22921C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(554): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22922C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(571): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22923C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(569): note: while compiling class template member function 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_l1(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22924 with
22925 [
22926 Data_Type=char
22927 ]
22928C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(457): note: see reference to function template instantiation 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_l1(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22929 with
22930 [
22931 Data_Type=char
22932 ]
22933C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(571): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22934C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(571): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22935C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(588): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22936C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(586): note: while compiling class template member function 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_r1(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)'
22937 with
22938 [
22939 Data_Type=char
22940 ]
22941C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(466): note: see reference to function template instantiation 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_r1(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &,Contour_Calculation::Grid_Cell_List &)' being compiled
22942 with
22943 [
22944 Data_Type=char
22945 ]
22946C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(588): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22947C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(588): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22948C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(604): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22949C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(602): note: while compiling class template member function 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_l2(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &)'
22950 with
22951 [
22952 Data_Type=char
22953 ]
22954C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(475): note: see reference to function template instantiation 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_l2(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &)' being compiled
22955 with
22956 [
22957 Data_Type=char
22958 ]
22959C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(604): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22960C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(604): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22961C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(620): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22962C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(618): note: while compiling class template member function 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_r2(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &)'
22963 with
22964 [
22965 Data_Type=char
22966 ]
22967C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(484): note: see reference to function template instantiation 'VIndex Contour_Calculation::CSurface<Data_Type>::add_cap_vertex_r2(VIndex,AIndex,AIndex,AIndex,Contour_Calculation::Grid_Cell_List &)' being compiled
22968 with
22969 [
22970 Data_Type=char
22971 ]
22972C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(620): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22973C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\map\_map\contour.cpp(620): warning C4244: 'argument': conversion from 'AIndex' to 'float', possible loss of data
22974"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/distgrid.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\distgrid.obj
22975distgrid.cpp
22976_map/distgrid.cpp(73): warning C4244: 'argument': conversion from 'const int64_t' to 'int', possible loss of data
22977_map/distgrid.cpp(74): warning C4244: 'argument': conversion from 'const int64_t' to 'int', possible loss of data
22978_map/distgrid.cpp(88): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
22979"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/extendmap.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\extendmap.obj
22980extendmap.cpp
22981_map/extendmap.cpp(43): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
22982_map/extendmap.cpp(193): warning C4244: 'argument': conversion from 'int64_t' to 'long', possible loss of data
22983_map/extendmap.cpp(118): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
22984_map/extendmap.cpp(191): note: see reference to function template instantiation 'void Map_Cpp::extend_map<char>(const Reference_Counted_Array::Array<char> &,int [],const FArray &,FArray &,float [][4],int64_t *,float *)' being compiled
22985_map/extendmap.cpp(118): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
22986_map/extendmap.cpp(118): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
22987_map/extendmap.cpp(67): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
22988 with
22989 [
22990 T=double
22991 ]
22992_map/extendmap.cpp(119): note: see reference to function template instantiation 'bool Map_Cpp::interpolate<T>(const T *,int,int,int,int64_t,int64_t,int64_t,float,float,float,float *)' being compiled
22993 with
22994 [
22995 T=double
22996 ]
22997_map/extendmap.cpp(191): note: see reference to function template instantiation 'void Map_Cpp::extend_map<double>(const Reference_Counted_Array::Array<double> &,int [],const FArray &,FArray &,float [][4],int64_t *,float *)' being compiled
22998"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/fitting.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\fitting.obj
22999fitting.cpp
23000_map/fitting.cpp(56): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23001_map/fitting.cpp(72): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23002_map/fitting.cpp(73): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23003_map/fitting.cpp(74): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23004_map/fitting.cpp(88): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23005_map/fitting.cpp(95): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23006_map/fitting.cpp(96): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23007_map/fitting.cpp(97): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23008_map/fitting.cpp(142): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23009_map/fitting.cpp(159): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23010_map/fitting.cpp(160): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23011_map/fitting.cpp(161): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23012_map/fitting.cpp(185): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23013_map/fitting.cpp(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23014_map/fitting.cpp(202): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23015_map/fitting.cpp(203): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23016"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/fittingpy.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\fittingpy.obj
23017fittingpy.cpp
23018"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/gaussian.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\gaussian.obj
23019gaussian.cpp
23020_map/gaussian.cpp(73): warning C4244: 'argument': conversion from 'const int64_t' to 'int', possible loss of data
23021_map/gaussian.cpp(74): warning C4244: 'argument': conversion from 'const int64_t' to 'int', possible loss of data
23022_map/gaussian.cpp(89): warning C4244: '+=': conversion from 'double' to 'float', possible loss of data
23023_map/gaussian.cpp(150): warning C4244: 'argument': conversion from 'const int64_t' to 'int', possible loss of data
23024_map/gaussian.cpp(151): warning C4244: 'argument': conversion from 'const int64_t' to 'int', possible loss of data
23025_map/gaussian.cpp(168): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23026_map/gaussian.cpp(169): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23027_map/gaussian.cpp(211): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
23028_map/gaussian.cpp(211): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
23029_map/gaussian.cpp(211): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
23030_map/gaussian.cpp(223): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
23031"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/histogram.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\histogram.obj
23032histogram.cpp
23033_map/histogram.cpp(363): warning C4244: 'argument': conversion from 'int64_t' to 'long', possible loss of data
23034_map/histogram.cpp(380): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
23035_map/histogram.cpp(403): note: see reference to function template instantiation 'void Map_Cpp::high_indices<char>(const Reference_Counted_Array::Array<char> &,float,int *)' being compiled
23036_map/histogram.cpp(380): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
23037_map/histogram.cpp(380): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
23038"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/interpolate.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\interpolate.obj
23039interpolate.cpp
23040_map/interpolate.cpp(47): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23041_map/interpolate.cpp(83): warning C4244: 'argument': conversion from 'int64_t' to '_Ty', possible loss of data
23042 with
23043 [
23044 _Ty=int
23045 ]
23046_map/interpolate.cpp(114): note: see reference to function template instantiation 'void Interpolate::interpolate_volume<char>(float [][3],int64_t,float [][4],const Reference_Counted_Array::Array<char> &,Interpolate::Interpolation_Method,float *,std::vector<int,std::allocator<int>> &)' being compiled
23047_map/interpolate.cpp(100): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23048 with
23049 [
23050 T=int
23051 ]
23052_map/interpolate.cpp(100): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23053 with
23054 [
23055 T=unsigned int
23056 ]
23057_map/interpolate.cpp(100): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23058 with
23059 [
23060 T=long
23061 ]
23062_map/interpolate.cpp(100): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23063 with
23064 [
23065 T=unsigned long
23066 ]
23067_map/interpolate.cpp(93): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23068 with
23069 [
23070 T=double
23071 ]
23072_map/interpolate.cpp(100): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23073 with
23074 [
23075 T=double
23076 ]
23077_map/interpolate.cpp(139): warning C4244: 'argument': conversion from 'int64_t' to '_Ty', possible loss of data
23078 with
23079 [
23080 _Ty=int
23081 ]
23082_map/interpolate.cpp(189): note: see reference to function template instantiation 'void Interpolate::interpolate_gradient<char>(float [][3],int64_t,float [][4],const Reference_Counted_Array::Array<char> &,Interpolate::Interpolation_Method,float [][3],std::vector<int,std::allocator<int>> &)' being compiled
23083_map/interpolate.cpp(154): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23084_map/interpolate.cpp(168): warning C4244: '=': conversion from 'int' to 'float', possible loss of data
23085_map/interpolate.cpp(168): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23086 with
23087 [
23088 T=int
23089 ]
23090_map/interpolate.cpp(168): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23091 with
23092 [
23093 T=unsigned int
23094 ]
23095_map/interpolate.cpp(168): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23096 with
23097 [
23098 T=long
23099 ]
23100_map/interpolate.cpp(168): warning C4244: '=': conversion from 'unsigned long' to 'float', possible loss of data
23101_map/interpolate.cpp(158): warning C4244: '+=': conversion from 'T' to 'float', possible loss of data
23102 with
23103 [
23104 T=double
23105 ]
23106_map/interpolate.cpp(168): warning C4244: '=': conversion from 'T' to 'float', possible loss of data
23107 with
23108 [
23109 T=double
23110 ]
23111"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/interpolatepy.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\interpolatepy.obj
23112interpolatepy.cpp
23113_map/interpolatepy.cpp(191): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
23114"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/localcorr.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\localcorr.obj
23115localcorr.cpp
23116_map/localcorr.cpp(81): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
23117_map/localcorr.cpp(146): note: see reference to function template instantiation 'void Map_Cpp::local_corr<char>(const Reference_Counted_Array::Array<char> &,const Reference_Counted_Array::Array<char> &,int64_t,bool,FArray &)' being compiled
23118"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/module.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\module.obj
23119module.cpp
23120"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/moments.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\moments.obj
23121moments.cpp
23122_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23123 with
23124 [
23125 T=char
23126 ]
23127_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23128 with
23129 [
23130 T=char
23131 ]
23132_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<char>(const Reference_Counted_Array::Array<char> &,double,double [],bool)' being compiled
23133_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23134 with
23135 [
23136 T=char
23137 ]
23138_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23139 with
23140 [
23141 T=signed char
23142 ]
23143_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23144 with
23145 [
23146 T=signed char
23147 ]
23148_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<signed char>(const Reference_Counted_Array::Array<signed char> &,double,double [],bool)' being compiled
23149_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23150 with
23151 [
23152 T=signed char
23153 ]
23154_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23155 with
23156 [
23157 T=unsigned char
23158 ]
23159_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23160 with
23161 [
23162 T=unsigned char
23163 ]
23164_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<unsigned char>(const Reference_Counted_Array::Array<unsigned char> &,double,double [],bool)' being compiled
23165_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23166 with
23167 [
23168 T=unsigned char
23169 ]
23170_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23171 with
23172 [
23173 T=short
23174 ]
23175_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23176 with
23177 [
23178 T=short
23179 ]
23180_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<short>(const Reference_Counted_Array::Array<short> &,double,double [],bool)' being compiled
23181_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23182 with
23183 [
23184 T=short
23185 ]
23186_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23187 with
23188 [
23189 T=unsigned short
23190 ]
23191_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23192 with
23193 [
23194 T=unsigned short
23195 ]
23196_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<unsigned short>(const Reference_Counted_Array::Array<unsigned short> &,double,double [],bool)' being compiled
23197_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23198 with
23199 [
23200 T=unsigned short
23201 ]
23202_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23203 with
23204 [
23205 T=int
23206 ]
23207_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23208 with
23209 [
23210 T=int
23211 ]
23212_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<int>(const Reference_Counted_Array::Array<int> &,double,double [],bool)' being compiled
23213_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23214 with
23215 [
23216 T=int
23217 ]
23218_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23219 with
23220 [
23221 T=unsigned int
23222 ]
23223_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23224 with
23225 [
23226 T=unsigned int
23227 ]
23228_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<unsigned int>(const Reference_Counted_Array::Array<unsigned int> &,double,double [],bool)' being compiled
23229_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23230 with
23231 [
23232 T=unsigned int
23233 ]
23234_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23235 with
23236 [
23237 T=long
23238 ]
23239_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23240 with
23241 [
23242 T=long
23243 ]
23244_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<long>(const Reference_Counted_Array::Array<long> &,double,double [],bool)' being compiled
23245_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23246 with
23247 [
23248 T=long
23249 ]
23250_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23251 with
23252 [
23253 T=unsigned long
23254 ]
23255_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23256 with
23257 [
23258 T=unsigned long
23259 ]
23260_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<unsigned long>(const Reference_Counted_Array::Array<unsigned long> &,double,double [],bool)' being compiled
23261_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23262 with
23263 [
23264 T=unsigned long
23265 ]
23266_map/moments.cpp(92): warning C4244: '/=': conversion from 'double' to 'T', possible loss of data
23267 with
23268 [
23269 T=float
23270 ]
23271_map/moments.cpp(145): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<T>(T *,const int64_t *,double,double *,bool)' being compiled
23272 with
23273 [
23274 T=float
23275 ]
23276_map/moments.cpp(164): note: see reference to function template instantiation 'void Map_Cpp::affine_scale<float>(const Reference_Counted_Array::Array<float> &,double,double [],bool)' being compiled
23277_map/moments.cpp(102): warning C4244: '*=': conversion from 'double' to 'T', possible loss of data
23278 with
23279 [
23280 T=float
23281 ]
23282"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/occupancy.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\occupancy.obj
23283occupancy.cpp
23284"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/squaremesh.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\squaremesh.obj
23285squaremesh.cpp
23286_map/squaremesh.cpp(52): warning C4244: 'initializing': conversion from 'int64_t' to 'VIndex', possible loss of data
23287_map/squaremesh.cpp(52): warning C4244: 'initializing': conversion from 'int64_t' to 'VIndex', possible loss of data
23288"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_map/transfer.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_map\transfer.obj
23289transfer.cpp
23290_map/transfer.cpp(853): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
23291_map/transfer.cpp(947): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23292_map/transfer.cpp(1008): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
23293_map/transfer.cpp(1025): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
23294_map/transfer.cpp(1033): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
23295_map/transfer.cpp(210): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
23296_map/transfer.cpp(273): note: see reference to function template instantiation 'void Map_Cpp::data_to_colormap_colors<char>(const Reference_Counted_Array::Array<char> &,float,float,const Map_Cpp::Color_Float_Array &,Map_Cpp::Color_Float_Array &,bool)' being compiled
23297_map/transfer.cpp(728): warning C4244: 'initializing': conversion from 'T' to 'float', possible loss of data
23298 with
23299 [
23300 T=double
23301 ]
23302_map/transfer.cpp(766): note: see reference to function template instantiation 'void Map_Cpp::`anonymous-namespace'::data_to_index<double,T>(const Reference_Counted_Array::Array<double> &,float,float,int64_t,int64_t,I *,bool)' being compiled
23303 with
23304 [
23305 T=unsigned short,
23306 I=unsigned short
23307 ]
23308_map/transfer.cpp(821): note: see reference to function template instantiation 'void Map_Cpp::data_to_bin_index<double>(const Reference_Counted_Array::Array<double> &,float,float,int64_t,int64_t,Map_Cpp::Index_Array &,bool)' being compiled
23309_map/transfer.cpp(740): warning C4244: 'initializing': conversion from 'T' to 'float', possible loss of data
23310 with
23311 [
23312 T=double
23313 ]
23314"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__map build\temp.win-amd64-cpython-311\Release\_map\boxcut.obj build\temp.win-amd64-cpython-311\Release\_map\colors.obj build\temp.win-amd64-cpython-311\Release\_map\combine.obj build\temp.win-amd64-cpython-311\Release\_map\contourdata.obj build\temp.win-amd64-cpython-311\Release\_map\contourpy.obj build\temp.win-amd64-cpython-311\Release\_map\distgrid.obj build\temp.win-amd64-cpython-311\Release\_map\extendmap.obj build\temp.win-amd64-cpython-311\Release\_map\fitting.obj build\temp.win-amd64-cpython-311\Release\_map\fittingpy.obj build\temp.win-amd64-cpython-311\Release\_map\gaussian.obj build\temp.win-amd64-cpython-311\Release\_map\histogram.obj build\temp.win-amd64-cpython-311\Release\_map\interpolate.obj build\temp.win-amd64-cpython-311\Release\_map\interpolatepy.obj build\temp.win-amd64-cpython-311\Release\_map\localcorr.obj build\temp.win-amd64-cpython-311\Release\_map\module.obj build\temp.win-amd64-cpython-311\Release\_map\moments.obj build\temp.win-amd64-cpython-311\Release\_map\occupancy.obj build\temp.win-amd64-cpython-311\Release\_map\squaremesh.obj build\temp.win-amd64-cpython-311\Release\_map\transfer.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\map\_map.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_map\_map.cp311-win_amd64.lib
23315 Creating library build\temp.win-amd64-cpython-311\Release\_map\_map.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_map\_map.cp311-win_amd64.exp
23316Generating code
23317Finished generating code
23318running bdist_wheel
23319installing to build\bdist.win-amd64\wheel
23320running install
23321running install_lib
23322running build_ext
23323creating build\bdist.win-amd64\wheel
23324creating build\bdist.win-amd64\wheel\chimerax
23325creating build\bdist.win-amd64\wheel\chimerax\map
23326copying build\lib.win-amd64-cpython-311\chimerax\map\channels.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23327creating build\bdist.win-amd64\wheel\chimerax\map\colortables
23328creating build\bdist.win-amd64\wheel\chimerax\map\colortables\cluts
23329copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\BlackBody.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23330copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Bones.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23331copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Kidneys.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23332copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Liver.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23333copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Lungs.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23334copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Muscles.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23335copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Skin.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23336copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Soft_Tissue.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23337copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_Vessels.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23338copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\CT_w_Contrast.clut -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23339copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Flow.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23340copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\French.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23341copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\GEcolor.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23342copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\GrayRainbow.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23343copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\HotGreen.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23344copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\HotIron.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23345copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\HotMetal.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23346copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Hue1.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23347copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Hue2.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23348copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\ired.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23349copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Jet.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23350copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\NIH.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23351copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Perfusion.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23352copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\PPU Inferno.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23353copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\PPU Magma.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23354copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\PPU Plasma.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23355copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\PPU Viridis.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23356copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Rainbow.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23357copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Rainbow2.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23358copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Rainbow3.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23359copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Ratio.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23360copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Spectrum.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23361copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\Stern.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23362copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\UCLA.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23363copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\VR Bones.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23364copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\VR Muscles-Bones.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23365copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\cluts\VR Red Vessels.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\cluts
23366copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\colortables.py -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables
23367creating build\bdist.win-amd64\wheel\chimerax\map\colortables\presets
23368copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Airways II.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23369copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Airways.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23370copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Black & White.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23371copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Bone + Skin II.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23372copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Bone + Skin.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23373copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Dark Bone.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23374copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Glossy II.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23375copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Glossy.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23376copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Gold Bone.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23377copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\High Contrast.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23378copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Low Contrast.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23379copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Mid Contrast.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23380copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\No Shading.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23381copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Pencil.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23382copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Red on White.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23383copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Skin On Blue II.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23384copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Skin On Blue.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23385copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Soft + Skin II.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23386copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Soft + Skin III.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23387copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Soft + Skin.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23388copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Soft On Blue.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23389copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Soft on White.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23390copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Soft.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23391copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Standard.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23392copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Vascular II.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23393copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Vascular III.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23394copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Vascular IV.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23395copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Vascular.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23396copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\presets\Yellow Bone.plist -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables\presets
23397copying build\lib.win-amd64-cpython-311\chimerax\map\colortables\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map\colortables
23398copying build\lib.win-amd64-cpython-311\chimerax\map\coords_gui.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23399copying build\lib.win-amd64-cpython-311\chimerax\map\defaultsettings.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23400copying build\lib.win-amd64-cpython-311\chimerax\map\eds_fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23401copying build\lib.win-amd64-cpython-311\chimerax\map\emdb_fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23402copying build\lib.win-amd64-cpython-311\chimerax\map\histogram.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23403creating build\bdist.win-amd64\wheel\chimerax\map\icons
23404copying build\lib.win-amd64-cpython-311\chimerax\map\icons\contour.png -> build\bdist.win-amd64\wheel\.\chimerax\map\icons
23405copying build\lib.win-amd64-cpython-311\chimerax\map\icons\crop.png -> build\bdist.win-amd64\wheel\.\chimerax\map\icons
23406copying build\lib.win-amd64-cpython-311\chimerax\map\icons\moveplanes.png -> build\bdist.win-amd64\wheel\.\chimerax\map\icons
23407copying build\lib.win-amd64-cpython-311\chimerax\map\icons\rotateslab.png -> build\bdist.win-amd64\wheel\.\chimerax\map\icons
23408copying build\lib.win-amd64-cpython-311\chimerax\map\icons\windowing.png -> build\bdist.win-amd64\wheel\.\chimerax\map\icons
23409copying build\lib.win-amd64-cpython-311\chimerax\map\image3d.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23410copying build\lib.win-amd64-cpython-311\chimerax\map\mapargs.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23411copying build\lib.win-amd64-cpython-311\chimerax\map\measure.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23412copying build\lib.win-amd64-cpython-311\chimerax\map\molmap.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23413copying build\lib.win-amd64-cpython-311\chimerax\map\mouselevel.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23414copying build\lib.win-amd64-cpython-311\chimerax\map\moveplanes.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23415copying build\lib.win-amd64-cpython-311\chimerax\map\redo_fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23416copying build\lib.win-amd64-cpython-311\chimerax\map\session.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23417copying build\lib.win-amd64-cpython-311\chimerax\map\slice.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23418copying build\lib.win-amd64-cpython-311\chimerax\map\tiltedslab.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23419copying build\lib.win-amd64-cpython-311\chimerax\map\volume.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23420copying build\lib.win-amd64-cpython-311\chimerax\map\volumecommand.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23421copying build\lib.win-amd64-cpython-311\chimerax\map\volume_viewer.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23422copying build\lib.win-amd64-cpython-311\chimerax\map\windowing.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23423copying build\lib.win-amd64-cpython-311\chimerax\map\_map.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\map
23424copying build\lib.win-amd64-cpython-311\chimerax\map\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map
23425running install_egg_info
23426running egg_info
23427creating ChimeraX_Map.egg-info
23428writing ChimeraX_Map.egg-info\PKG-INFO
23429writing dependency_links to ChimeraX_Map.egg-info\dependency_links.txt
23430writing requirements to ChimeraX_Map.egg-info\requires.txt
23431writing top-level names to ChimeraX_Map.egg-info\top_level.txt
23432writing manifest file 'ChimeraX_Map.egg-info\SOURCES.txt'
23433reading manifest file 'ChimeraX_Map.egg-info\SOURCES.txt'
23434writing manifest file 'ChimeraX_Map.egg-info\SOURCES.txt'
23435Copying ChimeraX_Map.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Map-1.3-py3.11.egg-info
23436running install_scripts
23437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
23438 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
23439creating build\bdist.win-amd64\wheel\chimerax_map-1.3.dist-info\WHEEL
23440creating 'dist\chimerax_map-1.3-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
23441adding 'chimerax/map/__init__.py'
23442adding 'chimerax/map/_map.cp311-win_amd64.pyd'
23443adding 'chimerax/map/channels.py'
23444adding 'chimerax/map/coords_gui.py'
23445adding 'chimerax/map/defaultsettings.py'
23446adding 'chimerax/map/eds_fetch.py'
23447adding 'chimerax/map/emdb_fetch.py'
23448adding 'chimerax/map/histogram.py'
23449adding 'chimerax/map/image3d.py'
23450adding 'chimerax/map/mapargs.py'
23451adding 'chimerax/map/measure.py'
23452adding 'chimerax/map/molmap.py'
23453adding 'chimerax/map/mouselevel.py'
23454adding 'chimerax/map/moveplanes.py'
23455adding 'chimerax/map/redo_fetch.py'
23456adding 'chimerax/map/session.py'
23457adding 'chimerax/map/slice.py'
23458adding 'chimerax/map/tiltedslab.py'
23459adding 'chimerax/map/volume.py'
23460adding 'chimerax/map/volume_viewer.py'
23461adding 'chimerax/map/volumecommand.py'
23462adding 'chimerax/map/windowing.py'
23463adding 'chimerax/map/colortables/__init__.py'
23464adding 'chimerax/map/colortables/colortables.py'
23465adding 'chimerax/map/colortables/cluts/BlackBody.plist'
23466adding 'chimerax/map/colortables/cluts/CT_Bones.clut'
23467adding 'chimerax/map/colortables/cluts/CT_Kidneys.clut'
23468adding 'chimerax/map/colortables/cluts/CT_Liver.clut'
23469adding 'chimerax/map/colortables/cluts/CT_Lungs.clut'
23470adding 'chimerax/map/colortables/cluts/CT_Muscles.clut'
23471adding 'chimerax/map/colortables/cluts/CT_Skin.clut'
23472adding 'chimerax/map/colortables/cluts/CT_Soft_Tissue.clut'
23473adding 'chimerax/map/colortables/cluts/CT_Vessels.clut'
23474adding 'chimerax/map/colortables/cluts/CT_w_Contrast.clut'
23475adding 'chimerax/map/colortables/cluts/Flow.plist'
23476adding 'chimerax/map/colortables/cluts/French.plist'
23477adding 'chimerax/map/colortables/cluts/GEcolor.plist'
23478adding 'chimerax/map/colortables/cluts/GrayRainbow.plist'
23479adding 'chimerax/map/colortables/cluts/HotGreen.plist'
23480adding 'chimerax/map/colortables/cluts/HotIron.plist'
23481adding 'chimerax/map/colortables/cluts/HotMetal.plist'
23482adding 'chimerax/map/colortables/cluts/Hue1.plist'
23483adding 'chimerax/map/colortables/cluts/Hue2.plist'
23484adding 'chimerax/map/colortables/cluts/Jet.plist'
23485adding 'chimerax/map/colortables/cluts/NIH.plist'
23486adding 'chimerax/map/colortables/cluts/PPU Inferno.plist'
23487adding 'chimerax/map/colortables/cluts/PPU Magma.plist'
23488adding 'chimerax/map/colortables/cluts/PPU Plasma.plist'
23489adding 'chimerax/map/colortables/cluts/PPU Viridis.plist'
23490adding 'chimerax/map/colortables/cluts/Perfusion.plist'
23491adding 'chimerax/map/colortables/cluts/Rainbow.plist'
23492adding 'chimerax/map/colortables/cluts/Rainbow2.plist'
23493adding 'chimerax/map/colortables/cluts/Rainbow3.plist'
23494adding 'chimerax/map/colortables/cluts/Ratio.plist'
23495adding 'chimerax/map/colortables/cluts/Spectrum.plist'
23496adding 'chimerax/map/colortables/cluts/Stern.plist'
23497adding 'chimerax/map/colortables/cluts/UCLA.plist'
23498adding 'chimerax/map/colortables/cluts/VR Bones.plist'
23499adding 'chimerax/map/colortables/cluts/VR Muscles-Bones.plist'
23500adding 'chimerax/map/colortables/cluts/VR Red Vessels.plist'
23501adding 'chimerax/map/colortables/cluts/ired.plist'
23502adding 'chimerax/map/colortables/presets/Airways II.plist'
23503adding 'chimerax/map/colortables/presets/Airways.plist'
23504adding 'chimerax/map/colortables/presets/Black & White.plist'
23505adding 'chimerax/map/colortables/presets/Bone + Skin II.plist'
23506adding 'chimerax/map/colortables/presets/Bone + Skin.plist'
23507adding 'chimerax/map/colortables/presets/Dark Bone.plist'
23508adding 'chimerax/map/colortables/presets/Glossy II.plist'
23509adding 'chimerax/map/colortables/presets/Glossy.plist'
23510adding 'chimerax/map/colortables/presets/Gold Bone.plist'
23511adding 'chimerax/map/colortables/presets/High Contrast.plist'
23512adding 'chimerax/map/colortables/presets/Low Contrast.plist'
23513adding 'chimerax/map/colortables/presets/Mid Contrast.plist'
23514adding 'chimerax/map/colortables/presets/No Shading.plist'
23515adding 'chimerax/map/colortables/presets/Pencil.plist'
23516adding 'chimerax/map/colortables/presets/Red on White.plist'
23517adding 'chimerax/map/colortables/presets/Skin On Blue II.plist'
23518adding 'chimerax/map/colortables/presets/Skin On Blue.plist'
23519adding 'chimerax/map/colortables/presets/Soft + Skin II.plist'
23520adding 'chimerax/map/colortables/presets/Soft + Skin III.plist'
23521adding 'chimerax/map/colortables/presets/Soft + Skin.plist'
23522adding 'chimerax/map/colortables/presets/Soft On Blue.plist'
23523adding 'chimerax/map/colortables/presets/Soft on White.plist'
23524adding 'chimerax/map/colortables/presets/Soft.plist'
23525adding 'chimerax/map/colortables/presets/Standard.plist'
23526adding 'chimerax/map/colortables/presets/Vascular II.plist'
23527adding 'chimerax/map/colortables/presets/Vascular III.plist'
23528adding 'chimerax/map/colortables/presets/Vascular IV.plist'
23529adding 'chimerax/map/colortables/presets/Vascular.plist'
23530adding 'chimerax/map/colortables/presets/Yellow Bone.plist'
23531adding 'chimerax/map/icons/contour.png'
23532adding 'chimerax/map/icons/crop.png'
23533adding 'chimerax/map/icons/moveplanes.png'
23534adding 'chimerax/map/icons/rotateslab.png'
23535adding 'chimerax/map/icons/windowing.png'
23536adding 'chimerax_map-1.3.dist-info/METADATA'
23537adding 'chimerax_map-1.3.dist-info/WHEEL'
23538adding 'chimerax_map-1.3.dist-info/top_level.txt'
23539adding 'chimerax_map-1.3.dist-info/RECORD'
23540removing build\bdist.win-amd64\wheel
23541Distribution is in .\dist\ChimeraX_Map-1.3-cp311-cp311-win_amd64.whl
23542INFO:
23543
23544make sync
23545make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map'
23546cp -av dist/*.whl ../../../build/sync
23547'dist/chimerax_map-1.3-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_map-1.3-cp311-cp311-win_amd64.whl'
23548make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map'
23549make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map'
23550make -C map_data build
23551make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
23552if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
23553 echo "missing ChimeraX application's python"; exit 1; \
23554else \
23555 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
23556fi
23557INFO:
23558Executing: devel build . exit true
23559C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
23560!!
23561
23562 ********************************************************************************
23563 Please consider removing the following classifiers in favor of a SPDX license expression:
23564
23565 License :: Free for non-commercial use
23566
23567 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
23568 ********************************************************************************
23569
23570!!
23571 self._finalize_license_expression()
23572running build
23573running build_py
23574creating build\lib\chimerax\map_data
23575copying src\arraygrid.py -> build\lib\chimerax\map_data
23576copying src\arrays.py -> build\lib\chimerax\map_data
23577copying src\datacache.py -> build\lib\chimerax\map_data
23578copying src\fileformats.py -> build\lib\chimerax\map_data
23579copying src\griddata.py -> build\lib\chimerax\map_data
23580copying src\memoryuse.py -> build\lib\chimerax\map_data
23581copying src\opendialog.py -> build\lib\chimerax\map_data
23582copying src\progress.py -> build\lib\chimerax\map_data
23583copying src\readarray.py -> build\lib\chimerax\map_data
23584copying src\regions.py -> build\lib\chimerax\map_data
23585copying src\subsample.py -> build\lib\chimerax\map_data
23586copying src\__init__.py -> build\lib\chimerax\map_data
23587creating build\lib\chimerax\map_data\amira
23588copying src\amira\amira_format.py -> build\lib\chimerax\map_data\amira
23589copying src\amira\amira_grid.py -> build\lib\chimerax\map_data\amira
23590copying src\amira\__init__.py -> build\lib\chimerax\map_data\amira
23591creating build\lib\chimerax\map_data\apbs
23592copying src\apbs\apbs_format.py -> build\lib\chimerax\map_data\apbs
23593copying src\apbs\apbs_grid.py -> build\lib\chimerax\map_data\apbs
23594copying src\apbs\__init__.py -> build\lib\chimerax\map_data\apbs
23595creating build\lib\chimerax\map_data\brix
23596copying src\brix\__init__.py -> build\lib\chimerax\map_data\brix
23597creating build\lib\chimerax\map_data\ccp4
23598copying src\ccp4\ccp4_grid.py -> build\lib\chimerax\map_data\ccp4
23599copying src\ccp4\__init__.py -> build\lib\chimerax\map_data\ccp4
23600creating build\lib\chimerax\map_data\cmap
23601copying src\cmap\cmap_format.py -> build\lib\chimerax\map_data\cmap
23602copying src\cmap\cmap_grid.py -> build\lib\chimerax\map_data\cmap
23603copying src\cmap\write_cmap.py -> build\lib\chimerax\map_data\cmap
23604copying src\cmap\__init__.py -> build\lib\chimerax\map_data\cmap
23605creating build\lib\chimerax\map_data\delphi
23606copying src\delphi\delphi_format.py -> build\lib\chimerax\map_data\delphi
23607copying src\delphi\delphi_grid.py -> build\lib\chimerax\map_data\delphi
23608copying src\delphi\__init__.py -> build\lib\chimerax\map_data\delphi
23609creating build\lib\chimerax\map_data\deltavision
23610copying src\deltavision\deltavision_format.py -> build\lib\chimerax\map_data\deltavision
23611copying src\deltavision\deltavision_grid.py -> build\lib\chimerax\map_data\deltavision
23612copying src\deltavision\__init__.py -> build\lib\chimerax\map_data\deltavision
23613creating build\lib\chimerax\map_data\dock
23614copying src\dock\dock_format.py -> build\lib\chimerax\map_data\dock
23615copying src\dock\dock_grid.py -> build\lib\chimerax\map_data\dock
23616copying src\dock\__init__.py -> build\lib\chimerax\map_data\dock
23617creating build\lib\chimerax\map_data\dsn6
23618copying src\dsn6\dsn6_format.py -> build\lib\chimerax\map_data\dsn6
23619copying src\dsn6\dsn6_grid.py -> build\lib\chimerax\map_data\dsn6
23620copying src\dsn6\writebrix.py -> build\lib\chimerax\map_data\dsn6
23621copying src\dsn6\__init__.py -> build\lib\chimerax\map_data\dsn6
23622creating build\lib\chimerax\map_data\emanhdf
23623copying src\emanhdf\eman_hdf_format.py -> build\lib\chimerax\map_data\emanhdf
23624copying src\emanhdf\eman_hdf_grid.py -> build\lib\chimerax\map_data\emanhdf
23625copying src\emanhdf\__init__.py -> build\lib\chimerax\map_data\emanhdf
23626creating build\lib\chimerax\map_data\gaussian
23627copying src\gaussian\gaussian_format.py -> build\lib\chimerax\map_data\gaussian
23628copying src\gaussian\gaussian_grid.py -> build\lib\chimerax\map_data\gaussian
23629copying src\gaussian\__init__.py -> build\lib\chimerax\map_data\gaussian
23630creating build\lib\chimerax\map_data\gopenmol
23631copying src\gopenmol\plt_format.py -> build\lib\chimerax\map_data\gopenmol
23632copying src\gopenmol\plt_grid.py -> build\lib\chimerax\map_data\gopenmol
23633copying src\gopenmol\__init__.py -> build\lib\chimerax\map_data\gopenmol
23634creating build\lib\chimerax\map_data\hdf
23635copying src\hdf\hdf_format.py -> build\lib\chimerax\map_data\hdf
23636copying src\hdf\hdf_grid.py -> build\lib\chimerax\map_data\hdf
23637copying src\hdf\__init__.py -> build\lib\chimerax\map_data\hdf
23638creating build\lib\chimerax\map_data\imagestack
23639copying src\imagestack\imagej_tiff.py -> build\lib\chimerax\map_data\imagestack
23640copying src\imagestack\imagej_write.py -> build\lib\chimerax\map_data\imagestack
23641copying src\imagestack\imagestack_format.py -> build\lib\chimerax\map_data\imagestack
23642copying src\imagestack\imagestack_grid.py -> build\lib\chimerax\map_data\imagestack
23643copying src\imagestack\ome_tiff.py -> build\lib\chimerax\map_data\imagestack
23644copying src\imagestack\__init__.py -> build\lib\chimerax\map_data\imagestack
23645creating build\lib\chimerax\map_data\imagic
23646copying src\imagic\imagic_format.py -> build\lib\chimerax\map_data\imagic
23647copying src\imagic\imagic_grid.py -> build\lib\chimerax\map_data\imagic
23648copying src\imagic\imagic_write.py -> build\lib\chimerax\map_data\imagic
23649copying src\imagic\__init__.py -> build\lib\chimerax\map_data\imagic
23650creating build\lib\chimerax\map_data\imod
23651copying src\imod\imod_grid.py -> build\lib\chimerax\map_data\imod
23652copying src\imod\__init__.py -> build\lib\chimerax\map_data\imod
23653creating build\lib\chimerax\map_data\ims
23654copying src\ims\ims_format.py -> build\lib\chimerax\map_data\ims
23655copying src\ims\ims_grid.py -> build\lib\chimerax\map_data\ims
23656copying src\ims\__init__.py -> build\lib\chimerax\map_data\ims
23657creating build\lib\chimerax\map_data\macmolplt
23658copying src\macmolplt\macmolplt_format.py -> build\lib\chimerax\map_data\macmolplt
23659copying src\macmolplt\macmolplt_grid.py -> build\lib\chimerax\map_data\macmolplt
23660copying src\macmolplt\__init__.py -> build\lib\chimerax\map_data\macmolplt
23661creating build\lib\chimerax\map_data\mrc
23662copying src\mrc\mrc_format.py -> build\lib\chimerax\map_data\mrc
23663copying src\mrc\mrc_grid.py -> build\lib\chimerax\map_data\mrc
23664copying src\mrc\writemrc.py -> build\lib\chimerax\map_data\mrc
23665copying src\mrc\__init__.py -> build\lib\chimerax\map_data\mrc
23666creating build\lib\chimerax\map_data\netcdf
23667copying src\netcdf\netcdf_format.py -> build\lib\chimerax\map_data\netcdf
23668copying src\netcdf\netcdf_grid.py -> build\lib\chimerax\map_data\netcdf
23669copying src\netcdf\__init__.py -> build\lib\chimerax\map_data\netcdf
23670creating build\lib\chimerax\map_data\pif
23671copying src\pif\pif_format.py -> build\lib\chimerax\map_data\pif
23672copying src\pif\pif_grid.py -> build\lib\chimerax\map_data\pif
23673copying src\pif\__init__.py -> build\lib\chimerax\map_data\pif
23674creating build\lib\chimerax\map_data\priism
23675copying src\priism\priism_format.py -> build\lib\chimerax\map_data\priism
23676copying src\priism\priism_grid.py -> build\lib\chimerax\map_data\priism
23677copying src\priism\__init__.py -> build\lib\chimerax\map_data\priism
23678creating build\lib\chimerax\map_data\profec
23679copying src\profec\profec_format.py -> build\lib\chimerax\map_data\profec
23680copying src\profec\profec_grid.py -> build\lib\chimerax\map_data\profec
23681copying src\profec\__init__.py -> build\lib\chimerax\map_data\profec
23682creating build\lib\chimerax\map_data\situs
23683copying src\situs\situs_format.py -> build\lib\chimerax\map_data\situs
23684copying src\situs\situs_grid.py -> build\lib\chimerax\map_data\situs
23685copying src\situs\__init__.py -> build\lib\chimerax\map_data\situs
23686creating build\lib\chimerax\map_data\spider
23687copying src\spider\spider_format.py -> build\lib\chimerax\map_data\spider
23688copying src\spider\spider_grid.py -> build\lib\chimerax\map_data\spider
23689copying src\spider\__init__.py -> build\lib\chimerax\map_data\spider
23690creating build\lib\chimerax\map_data\tiff
23691copying src\tiff\__init__.py -> build\lib\chimerax\map_data\tiff
23692creating build\lib\chimerax\map_data\tom_em
23693copying src\tom_em\em_format.py -> build\lib\chimerax\map_data\tom_em
23694copying src\tom_em\em_grid.py -> build\lib\chimerax\map_data\tom_em
23695copying src\tom_em\__init__.py -> build\lib\chimerax\map_data\tom_em
23696creating build\lib\chimerax\map_data\uhbd
23697copying src\uhbd\uhbd_format.py -> build\lib\chimerax\map_data\uhbd
23698copying src\uhbd\uhbd_grid.py -> build\lib\chimerax\map_data\uhbd
23699copying src\uhbd\__init__.py -> build\lib\chimerax\map_data\uhbd
23700creating build\lib\chimerax\map_data\xplor
23701copying src\xplor\xplor_format.py -> build\lib\chimerax\map_data\xplor
23702copying src\xplor\xplor_grid.py -> build\lib\chimerax\map_data\xplor
23703copying src\xplor\__init__.py -> build\lib\chimerax\map_data\xplor
23704running bdist_wheel
23705installing to build\bdist.win-amd64\wheel
23706running install
23707running install_lib
23708creating build\bdist.win-amd64\wheel
23709creating build\bdist.win-amd64\wheel\chimerax
23710creating build\bdist.win-amd64\wheel\chimerax\map_data
23711creating build\bdist.win-amd64\wheel\chimerax\map_data\amira
23712copying build\lib\chimerax\map_data\amira\amira_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\amira
23713copying build\lib\chimerax\map_data\amira\amira_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\amira
23714copying build\lib\chimerax\map_data\amira\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\amira
23715creating build\bdist.win-amd64\wheel\chimerax\map_data\apbs
23716copying build\lib\chimerax\map_data\apbs\apbs_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\apbs
23717copying build\lib\chimerax\map_data\apbs\apbs_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\apbs
23718copying build\lib\chimerax\map_data\apbs\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\apbs
23719copying build\lib\chimerax\map_data\arraygrid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23720copying build\lib\chimerax\map_data\arrays.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23721creating build\bdist.win-amd64\wheel\chimerax\map_data\brix
23722copying build\lib\chimerax\map_data\brix\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\brix
23723creating build\bdist.win-amd64\wheel\chimerax\map_data\ccp4
23724copying build\lib\chimerax\map_data\ccp4\ccp4_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\ccp4
23725copying build\lib\chimerax\map_data\ccp4\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\ccp4
23726creating build\bdist.win-amd64\wheel\chimerax\map_data\cmap
23727copying build\lib\chimerax\map_data\cmap\cmap_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\cmap
23728copying build\lib\chimerax\map_data\cmap\cmap_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\cmap
23729copying build\lib\chimerax\map_data\cmap\write_cmap.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\cmap
23730copying build\lib\chimerax\map_data\cmap\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\cmap
23731copying build\lib\chimerax\map_data\datacache.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23732creating build\bdist.win-amd64\wheel\chimerax\map_data\delphi
23733copying build\lib\chimerax\map_data\delphi\delphi_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\delphi
23734copying build\lib\chimerax\map_data\delphi\delphi_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\delphi
23735copying build\lib\chimerax\map_data\delphi\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\delphi
23736creating build\bdist.win-amd64\wheel\chimerax\map_data\deltavision
23737copying build\lib\chimerax\map_data\deltavision\deltavision_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\deltavision
23738copying build\lib\chimerax\map_data\deltavision\deltavision_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\deltavision
23739copying build\lib\chimerax\map_data\deltavision\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\deltavision
23740creating build\bdist.win-amd64\wheel\chimerax\map_data\dock
23741copying build\lib\chimerax\map_data\dock\dock_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\dock
23742copying build\lib\chimerax\map_data\dock\dock_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\dock
23743copying build\lib\chimerax\map_data\dock\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\dock
23744creating build\bdist.win-amd64\wheel\chimerax\map_data\dsn6
23745copying build\lib\chimerax\map_data\dsn6\dsn6_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\dsn6
23746copying build\lib\chimerax\map_data\dsn6\dsn6_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\dsn6
23747copying build\lib\chimerax\map_data\dsn6\writebrix.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\dsn6
23748copying build\lib\chimerax\map_data\dsn6\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\dsn6
23749creating build\bdist.win-amd64\wheel\chimerax\map_data\emanhdf
23750copying build\lib\chimerax\map_data\emanhdf\eman_hdf_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\emanhdf
23751copying build\lib\chimerax\map_data\emanhdf\eman_hdf_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\emanhdf
23752copying build\lib\chimerax\map_data\emanhdf\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\emanhdf
23753copying build\lib\chimerax\map_data\fileformats.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23754creating build\bdist.win-amd64\wheel\chimerax\map_data\gaussian
23755copying build\lib\chimerax\map_data\gaussian\gaussian_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\gaussian
23756copying build\lib\chimerax\map_data\gaussian\gaussian_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\gaussian
23757copying build\lib\chimerax\map_data\gaussian\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\gaussian
23758creating build\bdist.win-amd64\wheel\chimerax\map_data\gopenmol
23759copying build\lib\chimerax\map_data\gopenmol\plt_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\gopenmol
23760copying build\lib\chimerax\map_data\gopenmol\plt_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\gopenmol
23761copying build\lib\chimerax\map_data\gopenmol\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\gopenmol
23762copying build\lib\chimerax\map_data\griddata.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23763creating build\bdist.win-amd64\wheel\chimerax\map_data\hdf
23764copying build\lib\chimerax\map_data\hdf\hdf_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\hdf
23765copying build\lib\chimerax\map_data\hdf\hdf_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\hdf
23766copying build\lib\chimerax\map_data\hdf\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\hdf
23767creating build\bdist.win-amd64\wheel\chimerax\map_data\imagestack
23768copying build\lib\chimerax\map_data\imagestack\imagej_tiff.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagestack
23769copying build\lib\chimerax\map_data\imagestack\imagej_write.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagestack
23770copying build\lib\chimerax\map_data\imagestack\imagestack_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagestack
23771copying build\lib\chimerax\map_data\imagestack\imagestack_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagestack
23772copying build\lib\chimerax\map_data\imagestack\ome_tiff.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagestack
23773copying build\lib\chimerax\map_data\imagestack\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagestack
23774creating build\bdist.win-amd64\wheel\chimerax\map_data\imagic
23775copying build\lib\chimerax\map_data\imagic\imagic_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagic
23776copying build\lib\chimerax\map_data\imagic\imagic_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagic
23777copying build\lib\chimerax\map_data\imagic\imagic_write.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagic
23778copying build\lib\chimerax\map_data\imagic\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imagic
23779creating build\bdist.win-amd64\wheel\chimerax\map_data\imod
23780copying build\lib\chimerax\map_data\imod\imod_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imod
23781copying build\lib\chimerax\map_data\imod\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\imod
23782creating build\bdist.win-amd64\wheel\chimerax\map_data\ims
23783copying build\lib\chimerax\map_data\ims\ims_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\ims
23784copying build\lib\chimerax\map_data\ims\ims_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\ims
23785copying build\lib\chimerax\map_data\ims\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\ims
23786creating build\bdist.win-amd64\wheel\chimerax\map_data\macmolplt
23787copying build\lib\chimerax\map_data\macmolplt\macmolplt_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\macmolplt
23788copying build\lib\chimerax\map_data\macmolplt\macmolplt_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\macmolplt
23789copying build\lib\chimerax\map_data\macmolplt\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\macmolplt
23790copying build\lib\chimerax\map_data\memoryuse.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23791creating build\bdist.win-amd64\wheel\chimerax\map_data\mrc
23792copying build\lib\chimerax\map_data\mrc\mrc_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\mrc
23793copying build\lib\chimerax\map_data\mrc\mrc_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\mrc
23794copying build\lib\chimerax\map_data\mrc\writemrc.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\mrc
23795copying build\lib\chimerax\map_data\mrc\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\mrc
23796creating build\bdist.win-amd64\wheel\chimerax\map_data\netcdf
23797copying build\lib\chimerax\map_data\netcdf\netcdf_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\netcdf
23798copying build\lib\chimerax\map_data\netcdf\netcdf_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\netcdf
23799copying build\lib\chimerax\map_data\netcdf\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\netcdf
23800copying build\lib\chimerax\map_data\opendialog.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23801creating build\bdist.win-amd64\wheel\chimerax\map_data\pif
23802copying build\lib\chimerax\map_data\pif\pif_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\pif
23803copying build\lib\chimerax\map_data\pif\pif_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\pif
23804copying build\lib\chimerax\map_data\pif\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\pif
23805creating build\bdist.win-amd64\wheel\chimerax\map_data\priism
23806copying build\lib\chimerax\map_data\priism\priism_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\priism
23807copying build\lib\chimerax\map_data\priism\priism_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\priism
23808copying build\lib\chimerax\map_data\priism\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\priism
23809creating build\bdist.win-amd64\wheel\chimerax\map_data\profec
23810copying build\lib\chimerax\map_data\profec\profec_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\profec
23811copying build\lib\chimerax\map_data\profec\profec_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\profec
23812copying build\lib\chimerax\map_data\profec\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\profec
23813copying build\lib\chimerax\map_data\progress.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23814copying build\lib\chimerax\map_data\readarray.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23815copying build\lib\chimerax\map_data\regions.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23816creating build\bdist.win-amd64\wheel\chimerax\map_data\situs
23817copying build\lib\chimerax\map_data\situs\situs_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\situs
23818copying build\lib\chimerax\map_data\situs\situs_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\situs
23819copying build\lib\chimerax\map_data\situs\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\situs
23820creating build\bdist.win-amd64\wheel\chimerax\map_data\spider
23821copying build\lib\chimerax\map_data\spider\spider_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\spider
23822copying build\lib\chimerax\map_data\spider\spider_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\spider
23823copying build\lib\chimerax\map_data\spider\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\spider
23824copying build\lib\chimerax\map_data\subsample.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23825creating build\bdist.win-amd64\wheel\chimerax\map_data\tiff
23826copying build\lib\chimerax\map_data\tiff\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\tiff
23827creating build\bdist.win-amd64\wheel\chimerax\map_data\tom_em
23828copying build\lib\chimerax\map_data\tom_em\em_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\tom_em
23829copying build\lib\chimerax\map_data\tom_em\em_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\tom_em
23830copying build\lib\chimerax\map_data\tom_em\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\tom_em
23831creating build\bdist.win-amd64\wheel\chimerax\map_data\uhbd
23832copying build\lib\chimerax\map_data\uhbd\uhbd_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\uhbd
23833copying build\lib\chimerax\map_data\uhbd\uhbd_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\uhbd
23834copying build\lib\chimerax\map_data\uhbd\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\uhbd
23835creating build\bdist.win-amd64\wheel\chimerax\map_data\xplor
23836copying build\lib\chimerax\map_data\xplor\xplor_format.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\xplor
23837copying build\lib\chimerax\map_data\xplor\xplor_grid.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\xplor
23838copying build\lib\chimerax\map_data\xplor\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data\xplor
23839copying build\lib\chimerax\map_data\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_data
23840running install_egg_info
23841running egg_info
23842creating ChimeraX_MapData.egg-info
23843writing ChimeraX_MapData.egg-info\PKG-INFO
23844writing dependency_links to ChimeraX_MapData.egg-info\dependency_links.txt
23845writing requirements to ChimeraX_MapData.egg-info\requires.txt
23846writing top-level names to ChimeraX_MapData.egg-info\top_level.txt
23847writing manifest file 'ChimeraX_MapData.egg-info\SOURCES.txt'
23848reading manifest file 'ChimeraX_MapData.egg-info\SOURCES.txt'
23849writing manifest file 'ChimeraX_MapData.egg-info\SOURCES.txt'
23850Copying ChimeraX_MapData.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MapData-2.0-py3.11.egg-info
23851running install_scripts
23852creating build\bdist.win-amd64\wheel\chimerax_mapdata-2.0.dist-info\WHEEL
23853creating 'dist\chimerax_mapdata-2.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
23854adding 'chimerax/map_data/__init__.py'
23855adding 'chimerax/map_data/arraygrid.py'
23856adding 'chimerax/map_data/arrays.py'
23857adding 'chimerax/map_data/datacache.py'
23858adding 'chimerax/map_data/fileformats.py'
23859adding 'chimerax/map_data/griddata.py'
23860adding 'chimerax/map_data/memoryuse.py'
23861adding 'chimerax/map_data/opendialog.py'
23862adding 'chimerax/map_data/progress.py'
23863adding 'chimerax/map_data/readarray.py'
23864adding 'chimerax/map_data/regions.py'
23865adding 'chimerax/map_data/subsample.py'
23866adding 'chimerax/map_data/amira/__init__.py'
23867adding 'chimerax/map_data/amira/amira_format.py'
23868adding 'chimerax/map_data/amira/amira_grid.py'
23869adding 'chimerax/map_data/apbs/__init__.py'
23870adding 'chimerax/map_data/apbs/apbs_format.py'
23871adding 'chimerax/map_data/apbs/apbs_grid.py'
23872adding 'chimerax/map_data/brix/__init__.py'
23873adding 'chimerax/map_data/ccp4/__init__.py'
23874adding 'chimerax/map_data/ccp4/ccp4_grid.py'
23875adding 'chimerax/map_data/cmap/__init__.py'
23876adding 'chimerax/map_data/cmap/cmap_format.py'
23877adding 'chimerax/map_data/cmap/cmap_grid.py'
23878adding 'chimerax/map_data/cmap/write_cmap.py'
23879adding 'chimerax/map_data/delphi/__init__.py'
23880adding 'chimerax/map_data/delphi/delphi_format.py'
23881adding 'chimerax/map_data/delphi/delphi_grid.py'
23882adding 'chimerax/map_data/deltavision/__init__.py'
23883adding 'chimerax/map_data/deltavision/deltavision_format.py'
23884adding 'chimerax/map_data/deltavision/deltavision_grid.py'
23885adding 'chimerax/map_data/dock/__init__.py'
23886adding 'chimerax/map_data/dock/dock_format.py'
23887adding 'chimerax/map_data/dock/dock_grid.py'
23888adding 'chimerax/map_data/dsn6/__init__.py'
23889adding 'chimerax/map_data/dsn6/dsn6_format.py'
23890adding 'chimerax/map_data/dsn6/dsn6_grid.py'
23891adding 'chimerax/map_data/dsn6/writebrix.py'
23892adding 'chimerax/map_data/emanhdf/__init__.py'
23893adding 'chimerax/map_data/emanhdf/eman_hdf_format.py'
23894adding 'chimerax/map_data/emanhdf/eman_hdf_grid.py'
23895adding 'chimerax/map_data/gaussian/__init__.py'
23896adding 'chimerax/map_data/gaussian/gaussian_format.py'
23897adding 'chimerax/map_data/gaussian/gaussian_grid.py'
23898adding 'chimerax/map_data/gopenmol/__init__.py'
23899adding 'chimerax/map_data/gopenmol/plt_format.py'
23900adding 'chimerax/map_data/gopenmol/plt_grid.py'
23901adding 'chimerax/map_data/hdf/__init__.py'
23902adding 'chimerax/map_data/hdf/hdf_format.py'
23903adding 'chimerax/map_data/hdf/hdf_grid.py'
23904adding 'chimerax/map_data/imagestack/__init__.py'
23905adding 'chimerax/map_data/imagestack/imagej_tiff.py'
23906adding 'chimerax/map_data/imagestack/imagej_write.py'
23907adding 'chimerax/map_data/imagestack/imagestack_format.py'
23908adding 'chimerax/map_data/imagestack/imagestack_grid.py'
23909adding 'chimerax/map_data/imagestack/ome_tiff.py'
23910adding 'chimerax/map_data/imagic/__init__.py'
23911adding 'chimerax/map_data/imagic/imagic_format.py'
23912adding 'chimerax/map_data/imagic/imagic_grid.py'
23913adding 'chimerax/map_data/imagic/imagic_write.py'
23914adding 'chimerax/map_data/imod/__init__.py'
23915adding 'chimerax/map_data/imod/imod_grid.py'
23916adding 'chimerax/map_data/ims/__init__.py'
23917adding 'chimerax/map_data/ims/ims_format.py'
23918adding 'chimerax/map_data/ims/ims_grid.py'
23919adding 'chimerax/map_data/macmolplt/__init__.py'
23920adding 'chimerax/map_data/macmolplt/macmolplt_format.py'
23921adding 'chimerax/map_data/macmolplt/macmolplt_grid.py'
23922adding 'chimerax/map_data/mrc/__init__.py'
23923adding 'chimerax/map_data/mrc/mrc_format.py'
23924adding 'chimerax/map_data/mrc/mrc_grid.py'
23925adding 'chimerax/map_data/mrc/writemrc.py'
23926adding 'chimerax/map_data/netcdf/__init__.py'
23927adding 'chimerax/map_data/netcdf/netcdf_format.py'
23928adding 'chimerax/map_data/netcdf/netcdf_grid.py'
23929adding 'chimerax/map_data/pif/__init__.py'
23930adding 'chimerax/map_data/pif/pif_format.py'
23931adding 'chimerax/map_data/pif/pif_grid.py'
23932adding 'chimerax/map_data/priism/__init__.py'
23933adding 'chimerax/map_data/priism/priism_format.py'
23934adding 'chimerax/map_data/priism/priism_grid.py'
23935adding 'chimerax/map_data/profec/__init__.py'
23936adding 'chimerax/map_data/profec/profec_format.py'
23937adding 'chimerax/map_data/profec/profec_grid.py'
23938adding 'chimerax/map_data/situs/__init__.py'
23939adding 'chimerax/map_data/situs/situs_format.py'
23940adding 'chimerax/map_data/situs/situs_grid.py'
23941adding 'chimerax/map_data/spider/__init__.py'
23942adding 'chimerax/map_data/spider/spider_format.py'
23943adding 'chimerax/map_data/spider/spider_grid.py'
23944adding 'chimerax/map_data/tiff/__init__.py'
23945adding 'chimerax/map_data/tom_em/__init__.py'
23946adding 'chimerax/map_data/tom_em/em_format.py'
23947adding 'chimerax/map_data/tom_em/em_grid.py'
23948adding 'chimerax/map_data/uhbd/__init__.py'
23949adding 'chimerax/map_data/uhbd/uhbd_format.py'
23950adding 'chimerax/map_data/uhbd/uhbd_grid.py'
23951adding 'chimerax/map_data/xplor/__init__.py'
23952adding 'chimerax/map_data/xplor/xplor_format.py'
23953adding 'chimerax/map_data/xplor/xplor_grid.py'
23954adding 'chimerax_mapdata-2.0.dist-info/METADATA'
23955adding 'chimerax_mapdata-2.0.dist-info/WHEEL'
23956adding 'chimerax_mapdata-2.0.dist-info/top_level.txt'
23957adding 'chimerax_mapdata-2.0.dist-info/RECORD'
23958removing build\bdist.win-amd64\wheel
23959Distribution is in .\dist\ChimeraX_MapData-2.0-py3-none-any.whl
23960INFO:
23961
23962make sync
23963make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
23964cp -av dist/*.whl ../../../build/sync
23965'dist/chimerax_mapdata-2.0-py3-none-any.whl' -> '../../../build/sync/chimerax_mapdata-2.0-py3-none-any.whl'
23966make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
23967make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_data'
23968make -C map_eraser build
23969make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
23970if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
23971 echo "missing ChimeraX application's python"; exit 1; \
23972else \
23973 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
23974fi
23975INFO:
23976Executing: devel build . exit true
23977C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
23978!!
23979
23980 ********************************************************************************
23981 Please consider removing the following classifiers in favor of a SPDX license expression:
23982
23983 License :: Free for non-commercial use
23984
23985 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
23986 ********************************************************************************
23987
23988!!
23989 self._finalize_license_expression()
23990running build
23991running build_py
23992creating build\lib\chimerax\map_eraser
23993copying src\eraser.py -> build\lib\chimerax\map_eraser
23994copying src\__init__.py -> build\lib\chimerax\map_eraser
23995copying src\eraser.png -> build\lib\chimerax\map_eraser
23996running bdist_wheel
23997installing to build\bdist.win-amd64\wheel
23998running install
23999running install_lib
24000creating build\bdist.win-amd64\wheel
24001creating build\bdist.win-amd64\wheel\chimerax
24002creating build\bdist.win-amd64\wheel\chimerax\map_eraser
24003copying build\lib\chimerax\map_eraser\eraser.png -> build\bdist.win-amd64\wheel\.\chimerax\map_eraser
24004copying build\lib\chimerax\map_eraser\eraser.py -> build\bdist.win-amd64\wheel\.\chimerax\map_eraser
24005copying build\lib\chimerax\map_eraser\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_eraser
24006running install_egg_info
24007running egg_info
24008creating ChimeraX_MapEraser.egg-info
24009writing ChimeraX_MapEraser.egg-info\PKG-INFO
24010writing dependency_links to ChimeraX_MapEraser.egg-info\dependency_links.txt
24011writing requirements to ChimeraX_MapEraser.egg-info\requires.txt
24012writing top-level names to ChimeraX_MapEraser.egg-info\top_level.txt
24013writing manifest file 'ChimeraX_MapEraser.egg-info\SOURCES.txt'
24014reading manifest file 'ChimeraX_MapEraser.egg-info\SOURCES.txt'
24015writing manifest file 'ChimeraX_MapEraser.egg-info\SOURCES.txt'
24016Copying ChimeraX_MapEraser.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MapEraser-1.0.1-py3.11.egg-info
24017running install_scripts
24018creating build\bdist.win-amd64\wheel\chimerax_maperaser-1.0.1.dist-info\WHEEL
24019creating 'dist\chimerax_maperaser-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
24020adding 'chimerax/map_eraser/__init__.py'
24021adding 'chimerax/map_eraser/eraser.png'
24022adding 'chimerax/map_eraser/eraser.py'
24023adding 'chimerax_maperaser-1.0.1.dist-info/METADATA'
24024adding 'chimerax_maperaser-1.0.1.dist-info/WHEEL'
24025adding 'chimerax_maperaser-1.0.1.dist-info/top_level.txt'
24026adding 'chimerax_maperaser-1.0.1.dist-info/RECORD'
24027removing build\bdist.win-amd64\wheel
24028Distribution is in .\dist\ChimeraX_MapEraser-1.0.1-py3-none-any.whl
24029INFO:
24030
24031make sync
24032make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
24033cp -av dist/*.whl ../../../build/sync
24034'dist/chimerax_maperaser-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_maperaser-1.0.1-py3-none-any.whl'
24035make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
24036make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_eraser'
24037make -C map_filter build
24038make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
24039if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
24040 echo "missing ChimeraX application's python"; exit 1; \
24041else \
24042 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
24043fi
24044INFO:
24045Executing: devel build . exit true
24046C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
24047!!
24048
24049 ********************************************************************************
24050 Please consider removing the following classifiers in favor of a SPDX license expression:
24051
24052 License :: Free for non-commercial use
24053
24054 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
24055 ********************************************************************************
24056
24057!!
24058 self._finalize_license_expression()
24059running build
24060running build_py
24061creating build\lib\chimerax\map_filter
24062copying src\bin.py -> build\lib\chimerax\map_filter
24063copying src\boxes.py -> build\lib\chimerax\map_filter
24064copying src\cover.py -> build\lib\chimerax\map_filter
24065copying src\falloff.py -> build\lib\chimerax\map_filter
24066copying src\filtergui.py -> build\lib\chimerax\map_filter
24067copying src\flatten.py -> build\lib\chimerax\map_filter
24068copying src\flip.py -> build\lib\chimerax\map_filter
24069copying src\fourier.py -> build\lib\chimerax\map_filter
24070copying src\gaussian.py -> build\lib\chimerax\map_filter
24071copying src\laplace.py -> build\lib\chimerax\map_filter
24072copying src\localcorr.py -> build\lib\chimerax\map_filter
24073copying src\median.py -> build\lib\chimerax\map_filter
24074copying src\morph.py -> build\lib\chimerax\map_filter
24075copying src\morph_gui.py -> build\lib\chimerax\map_filter
24076copying src\permute.py -> build\lib\chimerax\map_filter
24077copying src\ridges.py -> build\lib\chimerax\map_filter
24078copying src\scale.py -> build\lib\chimerax\map_filter
24079copying src\stack.py -> build\lib\chimerax\map_filter
24080copying src\threshold.py -> build\lib\chimerax\map_filter
24081copying src\tile.py -> build\lib\chimerax\map_filter
24082copying src\unbend.py -> build\lib\chimerax\map_filter
24083copying src\unroll.py -> build\lib\chimerax\map_filter
24084copying src\vopcommand.py -> build\lib\chimerax\map_filter
24085copying src\zone.py -> build\lib\chimerax\map_filter
24086copying src\__init__.py -> build\lib\chimerax\map_filter
24087running bdist_wheel
24088installing to build\bdist.win-amd64\wheel
24089running install
24090running install_lib
24091creating build\bdist.win-amd64\wheel
24092creating build\bdist.win-amd64\wheel\chimerax
24093creating build\bdist.win-amd64\wheel\chimerax\map_filter
24094copying build\lib\chimerax\map_filter\bin.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24095copying build\lib\chimerax\map_filter\boxes.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24096copying build\lib\chimerax\map_filter\cover.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24097copying build\lib\chimerax\map_filter\falloff.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24098copying build\lib\chimerax\map_filter\filtergui.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24099copying build\lib\chimerax\map_filter\flatten.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24100copying build\lib\chimerax\map_filter\flip.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24101copying build\lib\chimerax\map_filter\fourier.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24102copying build\lib\chimerax\map_filter\gaussian.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24103copying build\lib\chimerax\map_filter\laplace.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24104copying build\lib\chimerax\map_filter\localcorr.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24105copying build\lib\chimerax\map_filter\median.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24106copying build\lib\chimerax\map_filter\morph.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24107copying build\lib\chimerax\map_filter\morph_gui.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24108copying build\lib\chimerax\map_filter\permute.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24109copying build\lib\chimerax\map_filter\ridges.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24110copying build\lib\chimerax\map_filter\scale.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24111copying build\lib\chimerax\map_filter\stack.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24112copying build\lib\chimerax\map_filter\threshold.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24113copying build\lib\chimerax\map_filter\tile.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24114copying build\lib\chimerax\map_filter\unbend.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24115copying build\lib\chimerax\map_filter\unroll.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24116copying build\lib\chimerax\map_filter\vopcommand.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24117copying build\lib\chimerax\map_filter\zone.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24118copying build\lib\chimerax\map_filter\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_filter
24119running install_egg_info
24120running egg_info
24121creating ChimeraX_MapFilter.egg-info
24122writing ChimeraX_MapFilter.egg-info\PKG-INFO
24123writing dependency_links to ChimeraX_MapFilter.egg-info\dependency_links.txt
24124writing requirements to ChimeraX_MapFilter.egg-info\requires.txt
24125writing top-level names to ChimeraX_MapFilter.egg-info\top_level.txt
24126writing manifest file 'ChimeraX_MapFilter.egg-info\SOURCES.txt'
24127reading manifest file 'ChimeraX_MapFilter.egg-info\SOURCES.txt'
24128writing manifest file 'ChimeraX_MapFilter.egg-info\SOURCES.txt'
24129Copying ChimeraX_MapFilter.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MapFilter-2.0.1-py3.11.egg-info
24130running install_scripts
24131creating build\bdist.win-amd64\wheel\chimerax_mapfilter-2.0.1.dist-info\WHEEL
24132creating 'dist\chimerax_mapfilter-2.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
24133adding 'chimerax/map_filter/__init__.py'
24134adding 'chimerax/map_filter/bin.py'
24135adding 'chimerax/map_filter/boxes.py'
24136adding 'chimerax/map_filter/cover.py'
24137adding 'chimerax/map_filter/falloff.py'
24138adding 'chimerax/map_filter/filtergui.py'
24139adding 'chimerax/map_filter/flatten.py'
24140adding 'chimerax/map_filter/flip.py'
24141adding 'chimerax/map_filter/fourier.py'
24142adding 'chimerax/map_filter/gaussian.py'
24143adding 'chimerax/map_filter/laplace.py'
24144adding 'chimerax/map_filter/localcorr.py'
24145adding 'chimerax/map_filter/median.py'
24146adding 'chimerax/map_filter/morph.py'
24147adding 'chimerax/map_filter/morph_gui.py'
24148adding 'chimerax/map_filter/permute.py'
24149adding 'chimerax/map_filter/ridges.py'
24150adding 'chimerax/map_filter/scale.py'
24151adding 'chimerax/map_filter/stack.py'
24152adding 'chimerax/map_filter/threshold.py'
24153adding 'chimerax/map_filter/tile.py'
24154adding 'chimerax/map_filter/unbend.py'
24155adding 'chimerax/map_filter/unroll.py'
24156adding 'chimerax/map_filter/vopcommand.py'
24157adding 'chimerax/map_filter/zone.py'
24158adding 'chimerax_mapfilter-2.0.1.dist-info/METADATA'
24159adding 'chimerax_mapfilter-2.0.1.dist-info/WHEEL'
24160adding 'chimerax_mapfilter-2.0.1.dist-info/top_level.txt'
24161adding 'chimerax_mapfilter-2.0.1.dist-info/RECORD'
24162removing build\bdist.win-amd64\wheel
24163Distribution is in .\dist\ChimeraX_MapFilter-2.0.1-py3-none-any.whl
24164INFO:
24165
24166make sync
24167make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
24168cp -av dist/*.whl ../../../build/sync
24169'dist/chimerax_mapfilter-2.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_mapfilter-2.0.1-py3-none-any.whl'
24170make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
24171make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_filter'
24172make -C map_fit build
24173make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
24174if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
24175 echo "missing ChimeraX application's python"; exit 1; \
24176else \
24177 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
24178fi
24179INFO:
24180Executing: devel build . exit true
24181C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
24182!!
24183
24184 ********************************************************************************
24185 Please consider removing the following classifiers in favor of a SPDX license expression:
24186
24187 License :: Free for non-commercial use
24188
24189 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
24190 ********************************************************************************
24191
24192!!
24193 self._finalize_license_expression()
24194running build
24195running build_py
24196creating build\lib\chimerax\map_fit
24197copying src\fitcmd.py -> build\lib\chimerax\map_fit
24198copying src\fitgui.py -> build\lib\chimerax\map_fit
24199copying src\fitlist.py -> build\lib\chimerax\map_fit
24200copying src\fitmap.py -> build\lib\chimerax\map_fit
24201copying src\move.py -> build\lib\chimerax\map_fit
24202copying src\search.py -> build\lib\chimerax\map_fit
24203copying src\sequence.py -> build\lib\chimerax\map_fit
24204copying src\session.py -> build\lib\chimerax\map_fit
24205copying src\__init__.py -> build\lib\chimerax\map_fit
24206running bdist_wheel
24207installing to build\bdist.win-amd64\wheel
24208running install
24209running install_lib
24210creating build\bdist.win-amd64\wheel
24211creating build\bdist.win-amd64\wheel\chimerax
24212creating build\bdist.win-amd64\wheel\chimerax\map_fit
24213copying build\lib\chimerax\map_fit\fitcmd.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24214copying build\lib\chimerax\map_fit\fitgui.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24215copying build\lib\chimerax\map_fit\fitlist.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24216copying build\lib\chimerax\map_fit\fitmap.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24217copying build\lib\chimerax\map_fit\move.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24218copying build\lib\chimerax\map_fit\search.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24219copying build\lib\chimerax\map_fit\sequence.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24220copying build\lib\chimerax\map_fit\session.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24221copying build\lib\chimerax\map_fit\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_fit
24222running install_egg_info
24223running egg_info
24224creating ChimeraX_MapFit.egg-info
24225writing ChimeraX_MapFit.egg-info\PKG-INFO
24226writing dependency_links to ChimeraX_MapFit.egg-info\dependency_links.txt
24227writing requirements to ChimeraX_MapFit.egg-info\requires.txt
24228writing top-level names to ChimeraX_MapFit.egg-info\top_level.txt
24229writing manifest file 'ChimeraX_MapFit.egg-info\SOURCES.txt'
24230reading manifest file 'ChimeraX_MapFit.egg-info\SOURCES.txt'
24231writing manifest file 'ChimeraX_MapFit.egg-info\SOURCES.txt'
24232Copying ChimeraX_MapFit.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MapFit-2.0-py3.11.egg-info
24233running install_scripts
24234creating build\bdist.win-amd64\wheel\chimerax_mapfit-2.0.dist-info\WHEEL
24235creating 'dist\chimerax_mapfit-2.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
24236adding 'chimerax/map_fit/__init__.py'
24237adding 'chimerax/map_fit/fitcmd.py'
24238adding 'chimerax/map_fit/fitgui.py'
24239adding 'chimerax/map_fit/fitlist.py'
24240adding 'chimerax/map_fit/fitmap.py'
24241adding 'chimerax/map_fit/move.py'
24242adding 'chimerax/map_fit/search.py'
24243adding 'chimerax/map_fit/sequence.py'
24244adding 'chimerax/map_fit/session.py'
24245adding 'chimerax_mapfit-2.0.dist-info/METADATA'
24246adding 'chimerax_mapfit-2.0.dist-info/WHEEL'
24247adding 'chimerax_mapfit-2.0.dist-info/top_level.txt'
24248adding 'chimerax_mapfit-2.0.dist-info/RECORD'
24249removing build\bdist.win-amd64\wheel
24250Distribution is in .\dist\ChimeraX_MapFit-2.0-py3-none-any.whl
24251INFO:
24252
24253make sync
24254make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
24255cp -av dist/*.whl ../../../build/sync
24256'dist/chimerax_mapfit-2.0-py3-none-any.whl' -> '../../../build/sync/chimerax_mapfit-2.0-py3-none-any.whl'
24257make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
24258make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_fit'
24259make -C map_series build
24260make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
24261if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
24262 echo "missing ChimeraX application's python"; exit 1; \
24263else \
24264 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
24265fi
24266INFO:
24267Executing: devel build . exit true
24268C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
24269!!
24270
24271 ********************************************************************************
24272 Please consider removing the following classifiers in favor of a SPDX license expression:
24273
24274 License :: Free for non-commercial use
24275
24276 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
24277 ********************************************************************************
24278
24279!!
24280 self._finalize_license_expression()
24281running build
24282running build_py
24283creating build\lib\chimerax\map_series
24284copying src\align.py -> build\lib\chimerax\map_series
24285copying src\measure_motion.py -> build\lib\chimerax\map_series
24286copying src\play.py -> build\lib\chimerax\map_series
24287copying src\series.py -> build\lib\chimerax\map_series
24288copying src\session.py -> build\lib\chimerax\map_series
24289copying src\slider.py -> build\lib\chimerax\map_series
24290copying src\vseries_command.py -> build\lib\chimerax\map_series
24291copying src\__init__.py -> build\lib\chimerax\map_series
24292copying src\vseries.png -> build\lib\chimerax\map_series
24293running bdist_wheel
24294installing to build\bdist.win-amd64\wheel
24295running install
24296running install_lib
24297creating build\bdist.win-amd64\wheel
24298creating build\bdist.win-amd64\wheel\chimerax
24299creating build\bdist.win-amd64\wheel\chimerax\map_series
24300copying build\lib\chimerax\map_series\align.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24301copying build\lib\chimerax\map_series\measure_motion.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24302copying build\lib\chimerax\map_series\play.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24303copying build\lib\chimerax\map_series\series.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24304copying build\lib\chimerax\map_series\session.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24305copying build\lib\chimerax\map_series\slider.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24306copying build\lib\chimerax\map_series\vseries.png -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24307copying build\lib\chimerax\map_series\vseries_command.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24308copying build\lib\chimerax\map_series\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\map_series
24309running install_egg_info
24310running egg_info
24311creating ChimeraX_MapSeries.egg-info
24312writing ChimeraX_MapSeries.egg-info\PKG-INFO
24313writing dependency_links to ChimeraX_MapSeries.egg-info\dependency_links.txt
24314writing requirements to ChimeraX_MapSeries.egg-info\requires.txt
24315writing top-level names to ChimeraX_MapSeries.egg-info\top_level.txt
24316writing manifest file 'ChimeraX_MapSeries.egg-info\SOURCES.txt'
24317reading manifest file 'ChimeraX_MapSeries.egg-info\SOURCES.txt'
24318writing manifest file 'ChimeraX_MapSeries.egg-info\SOURCES.txt'
24319Copying ChimeraX_MapSeries.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MapSeries-2.1.1-py3.11.egg-info
24320running install_scripts
24321creating build\bdist.win-amd64\wheel\chimerax_mapseries-2.1.1.dist-info\WHEEL
24322creating 'dist\chimerax_mapseries-2.1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
24323adding 'chimerax/map_series/__init__.py'
24324adding 'chimerax/map_series/align.py'
24325adding 'chimerax/map_series/measure_motion.py'
24326adding 'chimerax/map_series/play.py'
24327adding 'chimerax/map_series/series.py'
24328adding 'chimerax/map_series/session.py'
24329adding 'chimerax/map_series/slider.py'
24330adding 'chimerax/map_series/vseries.png'
24331adding 'chimerax/map_series/vseries_command.py'
24332adding 'chimerax_mapseries-2.1.1.dist-info/METADATA'
24333adding 'chimerax_mapseries-2.1.1.dist-info/WHEEL'
24334adding 'chimerax_mapseries-2.1.1.dist-info/top_level.txt'
24335adding 'chimerax_mapseries-2.1.1.dist-info/RECORD'
24336removing build\bdist.win-amd64\wheel
24337Distribution is in .\dist\ChimeraX_MapSeries-2.1.1-py3-none-any.whl
24338INFO:
24339
24340make sync
24341make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
24342cp -av dist/*.whl ../../../build/sync
24343'dist/chimerax_mapseries-2.1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_mapseries-2.1.1-py3-none-any.whl'
24344make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
24345make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/map_series'
24346make -C markers build
24347make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
24348if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
24349 echo "missing ChimeraX application's python"; exit 1; \
24350else \
24351 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
24352fi
24353INFO:
24354Executing: devel build . exit true
24355C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
24356!!
24357
24358 ********************************************************************************
24359 Please consider removing the following classifiers in favor of a SPDX license expression:
24360
24361 License :: Free for non-commercial use
24362
24363 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
24364 ********************************************************************************
24365
24366!!
24367 self._finalize_license_expression()
24368running build
24369running build_py
24370creating build\lib\chimerax\markers
24371copying src\cmd.py -> build\lib\chimerax\markers
24372copying src\cmmfiles.py -> build\lib\chimerax\markers
24373copying src\markergui.py -> build\lib\chimerax\markers
24374copying src\markers.py -> build\lib\chimerax\markers
24375copying src\mouse.py -> build\lib\chimerax\markers
24376copying src\__init__.py -> build\lib\chimerax\markers
24377creating build\lib\chimerax\markers\icons
24378copying src\icons\ball.png -> build\lib\chimerax\markers\icons
24379copying src\icons\center.png -> build\lib\chimerax\markers\icons
24380copying src\icons\delete.png -> build\lib\chimerax\markers\icons
24381copying src\icons\link.png -> build\lib\chimerax\markers\icons
24382copying src\icons\marker.png -> build\lib\chimerax\markers\icons
24383copying src\icons\marker2.png -> build\lib\chimerax\markers\icons
24384copying src\icons\maximum.png -> build\lib\chimerax\markers\icons
24385copying src\icons\move.png -> build\lib\chimerax\markers\icons
24386copying src\icons\plane.png -> build\lib\chimerax\markers\icons
24387copying src\icons\point.png -> build\lib\chimerax\markers\icons
24388copying src\icons\resize.png -> build\lib\chimerax\markers\icons
24389copying src\icons\surface.png -> build\lib\chimerax\markers\icons
24390running bdist_wheel
24391installing to build\bdist.win-amd64\wheel
24392running install
24393running install_lib
24394creating build\bdist.win-amd64\wheel
24395creating build\bdist.win-amd64\wheel\chimerax
24396creating build\bdist.win-amd64\wheel\chimerax\markers
24397copying build\lib\chimerax\markers\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\markers
24398copying build\lib\chimerax\markers\cmmfiles.py -> build\bdist.win-amd64\wheel\.\chimerax\markers
24399creating build\bdist.win-amd64\wheel\chimerax\markers\icons
24400copying build\lib\chimerax\markers\icons\ball.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24401copying build\lib\chimerax\markers\icons\center.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24402copying build\lib\chimerax\markers\icons\delete.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24403copying build\lib\chimerax\markers\icons\link.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24404copying build\lib\chimerax\markers\icons\marker.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24405copying build\lib\chimerax\markers\icons\marker2.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24406copying build\lib\chimerax\markers\icons\maximum.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24407copying build\lib\chimerax\markers\icons\move.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24408copying build\lib\chimerax\markers\icons\plane.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24409copying build\lib\chimerax\markers\icons\point.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24410copying build\lib\chimerax\markers\icons\resize.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24411copying build\lib\chimerax\markers\icons\surface.png -> build\bdist.win-amd64\wheel\.\chimerax\markers\icons
24412copying build\lib\chimerax\markers\markergui.py -> build\bdist.win-amd64\wheel\.\chimerax\markers
24413copying build\lib\chimerax\markers\markers.py -> build\bdist.win-amd64\wheel\.\chimerax\markers
24414copying build\lib\chimerax\markers\mouse.py -> build\bdist.win-amd64\wheel\.\chimerax\markers
24415copying build\lib\chimerax\markers\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\markers
24416running install_egg_info
24417running egg_info
24418creating ChimeraX_Markers.egg-info
24419writing ChimeraX_Markers.egg-info\PKG-INFO
24420writing dependency_links to ChimeraX_Markers.egg-info\dependency_links.txt
24421writing requirements to ChimeraX_Markers.egg-info\requires.txt
24422writing top-level names to ChimeraX_Markers.egg-info\top_level.txt
24423writing manifest file 'ChimeraX_Markers.egg-info\SOURCES.txt'
24424reading manifest file 'ChimeraX_Markers.egg-info\SOURCES.txt'
24425writing manifest file 'ChimeraX_Markers.egg-info\SOURCES.txt'
24426Copying ChimeraX_Markers.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Markers-1.0.1-py3.11.egg-info
24427running install_scripts
24428creating build\bdist.win-amd64\wheel\chimerax_markers-1.0.1.dist-info\WHEEL
24429creating 'dist\chimerax_markers-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
24430adding 'chimerax/markers/__init__.py'
24431adding 'chimerax/markers/cmd.py'
24432adding 'chimerax/markers/cmmfiles.py'
24433adding 'chimerax/markers/markergui.py'
24434adding 'chimerax/markers/markers.py'
24435adding 'chimerax/markers/mouse.py'
24436adding 'chimerax/markers/icons/ball.png'
24437adding 'chimerax/markers/icons/center.png'
24438adding 'chimerax/markers/icons/delete.png'
24439adding 'chimerax/markers/icons/link.png'
24440adding 'chimerax/markers/icons/marker.png'
24441adding 'chimerax/markers/icons/marker2.png'
24442adding 'chimerax/markers/icons/maximum.png'
24443adding 'chimerax/markers/icons/move.png'
24444adding 'chimerax/markers/icons/plane.png'
24445adding 'chimerax/markers/icons/point.png'
24446adding 'chimerax/markers/icons/resize.png'
24447adding 'chimerax/markers/icons/surface.png'
24448adding 'chimerax_markers-1.0.1.dist-info/METADATA'
24449adding 'chimerax_markers-1.0.1.dist-info/WHEEL'
24450adding 'chimerax_markers-1.0.1.dist-info/top_level.txt'
24451adding 'chimerax_markers-1.0.1.dist-info/RECORD'
24452removing build\bdist.win-amd64\wheel
24453Distribution is in .\dist\ChimeraX_Markers-1.0.1-py3-none-any.whl
24454INFO:
24455
24456make sync
24457make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
24458cp -av dist/*.whl ../../../build/sync
24459'dist/chimerax_markers-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_markers-1.0.1-py3-none-any.whl'
24460make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
24461make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/markers'
24462make -C mask build
24463make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
24464if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
24465 echo "missing ChimeraX application's python"; exit 1; \
24466else \
24467 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
24468fi
24469INFO:
24470Executing: devel build . exit true
24471C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
24472!!
24473
24474 ********************************************************************************
24475 Please consider removing the following classifiers in favor of a SPDX license expression:
24476
24477 License :: Free for non-commercial use
24478
24479 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
24480 ********************************************************************************
24481
24482!!
24483 self._finalize_license_expression()
24484running build
24485running build_py
24486creating build\lib.win-amd64-cpython-311\chimerax\mask
24487copying src\depthmask.py -> build\lib.win-amd64-cpython-311\chimerax\mask
24488copying src\maskcommand.py -> build\lib.win-amd64-cpython-311\chimerax\mask
24489copying src\mask_cpp.py -> build\lib.win-amd64-cpython-311\chimerax\mask
24490copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\mask
24491running build_ext
24492building 'chimerax.mask._mask' extension
24493creating build\temp.win-amd64-cpython-311\Release\_mask
24494"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_mask/mask.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_mask\mask.obj
24495mask.cpp
24496_mask/mask.cpp(57): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24497_mask/mask.cpp(94): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
24498_mask/mask.cpp(127): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
24499_mask/mask.cpp(135): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24500_mask/mask.cpp(184): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24501_mask/mask.cpp(184): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24502_mask/mask.cpp(209): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24503_mask/mask.cpp(265): note: see reference to function template instantiation 'void fill_slab<char>(const FArray &,const FArray &,float [][4],Reference_Counted_Array::Array<char>,float)' being compiled
24504_mask/mask.cpp(209): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24505_mask/mask.cpp(209): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24506_mask/mask.cpp(210): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24507_mask/mask.cpp(210): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24508_mask/mask.cpp(211): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24509_mask/mask.cpp(211): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24510_mask/mask.cpp(212): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24511_mask/mask.cpp(212): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24512_mask/mask.cpp(275): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24513_mask/mask.cpp(317): note: see reference to function template instantiation 'void pad_mask<char>(Reference_Counted_Array::Array<char>,int)' being compiled
24514_mask/mask.cpp(275): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24515_mask/mask.cpp(275): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24516_mask/mask.cpp(276): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24517_mask/mask.cpp(276): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24518_mask/mask.cpp(276): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
24519"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__mask build\temp.win-amd64-cpython-311\Release\_mask\mask.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\mask\_mask.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_mask\_mask.cp311-win_amd64.lib
24520 Creating library build\temp.win-amd64-cpython-311\Release\_mask\_mask.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_mask\_mask.cp311-win_amd64.exp
24521Generating code
24522Finished generating code
24523running bdist_wheel
24524installing to build\bdist.win-amd64\wheel
24525running install
24526running install_lib
24527running build_ext
24528creating build\bdist.win-amd64\wheel
24529creating build\bdist.win-amd64\wheel\chimerax
24530creating build\bdist.win-amd64\wheel\chimerax\mask
24531copying build\lib.win-amd64-cpython-311\chimerax\mask\depthmask.py -> build\bdist.win-amd64\wheel\.\chimerax\mask
24532copying build\lib.win-amd64-cpython-311\chimerax\mask\maskcommand.py -> build\bdist.win-amd64\wheel\.\chimerax\mask
24533copying build\lib.win-amd64-cpython-311\chimerax\mask\mask_cpp.py -> build\bdist.win-amd64\wheel\.\chimerax\mask
24534copying build\lib.win-amd64-cpython-311\chimerax\mask\_mask.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\mask
24535copying build\lib.win-amd64-cpython-311\chimerax\mask\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mask
24536running install_egg_info
24537running egg_info
24538creating ChimeraX_Mask.egg-info
24539writing ChimeraX_Mask.egg-info\PKG-INFO
24540writing dependency_links to ChimeraX_Mask.egg-info\dependency_links.txt
24541writing requirements to ChimeraX_Mask.egg-info\requires.txt
24542writing top-level names to ChimeraX_Mask.egg-info\top_level.txt
24543writing manifest file 'ChimeraX_Mask.egg-info\SOURCES.txt'
24544reading manifest file 'ChimeraX_Mask.egg-info\SOURCES.txt'
24545writing manifest file 'ChimeraX_Mask.egg-info\SOURCES.txt'
24546Copying ChimeraX_Mask.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Mask-1.0.2-py3.11.egg-info
24547running install_scripts
24548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
24549 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
24550creating build\bdist.win-amd64\wheel\chimerax_mask-1.0.2.dist-info\WHEEL
24551creating 'dist\chimerax_mask-1.0.2-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
24552adding 'chimerax/mask/__init__.py'
24553adding 'chimerax/mask/_mask.cp311-win_amd64.pyd'
24554adding 'chimerax/mask/depthmask.py'
24555adding 'chimerax/mask/mask_cpp.py'
24556adding 'chimerax/mask/maskcommand.py'
24557adding 'chimerax_mask-1.0.2.dist-info/METADATA'
24558adding 'chimerax_mask-1.0.2.dist-info/WHEEL'
24559adding 'chimerax_mask-1.0.2.dist-info/top_level.txt'
24560adding 'chimerax_mask-1.0.2.dist-info/RECORD'
24561removing build\bdist.win-amd64\wheel
24562Distribution is in .\dist\ChimeraX_Mask-1.0.2-cp311-cp311-win_amd64.whl
24563INFO:
24564
24565make sync
24566make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
24567cp -av dist/*.whl ../../../build/sync
24568'dist/chimerax_mask-1.0.2-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_mask-1.0.2-cp311-cp311-win_amd64.whl'
24569make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
24570make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mask'
24571make -C match_maker build
24572make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
24573if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
24574 echo "missing ChimeraX application's python"; exit 1; \
24575else \
24576 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
24577fi
24578INFO:
24579Executing: devel build . exit true
24580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
24581!!
24582
24583 ********************************************************************************
24584 Please consider removing the following classifiers in favor of a SPDX license expression:
24585
24586 License :: Free for non-commercial use
24587
24588 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
24589 ********************************************************************************
24590
24591!!
24592 self._finalize_license_expression()
24593running build
24594running build_py
24595creating build\lib\chimerax\match_maker
24596copying src\match.py -> build\lib\chimerax\match_maker
24597copying src\settings.py -> build\lib\chimerax\match_maker
24598copying src\tool.py -> build\lib\chimerax\match_maker
24599copying src\__init__.py -> build\lib\chimerax\match_maker
24600running bdist_wheel
24601installing to build\bdist.win-amd64\wheel
24602running install
24603running install_lib
24604creating build\bdist.win-amd64\wheel
24605creating build\bdist.win-amd64\wheel\chimerax
24606creating build\bdist.win-amd64\wheel\chimerax\match_maker
24607copying build\lib\chimerax\match_maker\match.py -> build\bdist.win-amd64\wheel\.\chimerax\match_maker
24608copying build\lib\chimerax\match_maker\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\match_maker
24609copying build\lib\chimerax\match_maker\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\match_maker
24610copying build\lib\chimerax\match_maker\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\match_maker
24611running install_egg_info
24612running egg_info
24613creating ChimeraX_MatchMaker.egg-info
24614writing ChimeraX_MatchMaker.egg-info\PKG-INFO
24615writing dependency_links to ChimeraX_MatchMaker.egg-info\dependency_links.txt
24616writing requirements to ChimeraX_MatchMaker.egg-info\requires.txt
24617writing top-level names to ChimeraX_MatchMaker.egg-info\top_level.txt
24618writing manifest file 'ChimeraX_MatchMaker.egg-info\SOURCES.txt'
24619reading manifest file 'ChimeraX_MatchMaker.egg-info\SOURCES.txt'
24620writing manifest file 'ChimeraX_MatchMaker.egg-info\SOURCES.txt'
24621Copying ChimeraX_MatchMaker.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MatchMaker-2.2.2-py3.11.egg-info
24622running install_scripts
24623creating build\bdist.win-amd64\wheel\chimerax_matchmaker-2.2.2.dist-info\WHEEL
24624creating 'dist\chimerax_matchmaker-2.2.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
24625adding 'chimerax/match_maker/__init__.py'
24626adding 'chimerax/match_maker/match.py'
24627adding 'chimerax/match_maker/settings.py'
24628adding 'chimerax/match_maker/tool.py'
24629adding 'chimerax_matchmaker-2.2.2.dist-info/METADATA'
24630adding 'chimerax_matchmaker-2.2.2.dist-info/WHEEL'
24631adding 'chimerax_matchmaker-2.2.2.dist-info/top_level.txt'
24632adding 'chimerax_matchmaker-2.2.2.dist-info/RECORD'
24633removing build\bdist.win-amd64\wheel
24634Distribution is in .\dist\ChimeraX_MatchMaker-2.2.2-py3-none-any.whl
24635INFO:
24636
24637make sync
24638make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
24639cp -av dist/*.whl ../../../build/sync
24640'dist/chimerax_matchmaker-2.2.2-py3-none-any.whl' -> '../../../build/sync/chimerax_matchmaker-2.2.2-py3-none-any.whl'
24641make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
24642make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/match_maker'
24643make -C mcopy build
24644make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
24645if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
24646 echo "missing ChimeraX application's python"; exit 1; \
24647else \
24648 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
24649fi
24650INFO:
24651Executing: devel build . exit true
24652C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
24653!!
24654
24655 ********************************************************************************
24656 Please consider removing the following classifiers in favor of a SPDX license expression:
24657
24658 License :: Free for non-commercial use
24659
24660 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
24661 ********************************************************************************
24662
24663!!
24664 self._finalize_license_expression()
24665running build
24666running build_py
24667creating build\lib\chimerax\mcopy
24668copying src\mcopy.py -> build\lib\chimerax\mcopy
24669copying src\__init__.py -> build\lib\chimerax\mcopy
24670running bdist_wheel
24671installing to build\bdist.win-amd64\wheel
24672running install
24673running install_lib
24674creating build\bdist.win-amd64\wheel
24675creating build\bdist.win-amd64\wheel\chimerax
24676creating build\bdist.win-amd64\wheel\chimerax\mcopy
24677copying build\lib\chimerax\mcopy\mcopy.py -> build\bdist.win-amd64\wheel\.\chimerax\mcopy
24678copying build\lib\chimerax\mcopy\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mcopy
24679running install_egg_info
24680running egg_info
24681creating ChimeraX_MCopy.egg-info
24682writing ChimeraX_MCopy.egg-info\PKG-INFO
24683writing dependency_links to ChimeraX_MCopy.egg-info\dependency_links.txt
24684writing requirements to ChimeraX_MCopy.egg-info\requires.txt
24685writing top-level names to ChimeraX_MCopy.egg-info\top_level.txt
24686writing manifest file 'ChimeraX_MCopy.egg-info\SOURCES.txt'
24687reading manifest file 'ChimeraX_MCopy.egg-info\SOURCES.txt'
24688writing manifest file 'ChimeraX_MCopy.egg-info\SOURCES.txt'
24689Copying ChimeraX_MCopy.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MCopy-1.0-py3.11.egg-info
24690running install_scripts
24691creating build\bdist.win-amd64\wheel\chimerax_mcopy-1.0.dist-info\WHEEL
24692creating 'dist\chimerax_mcopy-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
24693adding 'chimerax/mcopy/__init__.py'
24694adding 'chimerax/mcopy/mcopy.py'
24695adding 'chimerax_mcopy-1.0.dist-info/METADATA'
24696adding 'chimerax_mcopy-1.0.dist-info/WHEEL'
24697adding 'chimerax_mcopy-1.0.dist-info/top_level.txt'
24698adding 'chimerax_mcopy-1.0.dist-info/RECORD'
24699removing build\bdist.win-amd64\wheel
24700Distribution is in .\dist\ChimeraX_MCopy-1.0-py3-none-any.whl
24701INFO:
24702
24703make sync
24704make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
24705cp -av dist/*.whl ../../../build/sync
24706'dist/chimerax_mcopy-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_mcopy-1.0-py3-none-any.whl'
24707make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
24708make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mcopy'
24709make -C md_crds build
24710make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
24711make -C gromacs all
24712make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
24713# Use separate makefile for xdr so that PREREQ_MAKE can be turned on
24714make -f Makefile.xdrfile
24715make[7]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
24716tar zxf xdrfile-1.1.4.tar.gz --no-same-owner
24717cp configure.ac xdrfile-1.1.4/configure.ac
24718cd xdrfile-1.1.4 ; autoconf
24719configure.ac:11: warning: The macro 'AC_FOREACH' is obsolete.
24720configure.ac:11: You should run autoupdate.
24721/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:191: AC_FOREACH is expanded from...
24722aclocal.m4:727: _AM_SET_OPTIONS is expanded from...
24723aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from...
24724configure.ac:11: the top level
24725configure.ac:14: warning: The macro 'AM_CONFIG_HEADER' is obsolete.
24726configure.ac:14: You should run autoupdate.
24727aclocal.m4:402: AM_CONFIG_HEADER is expanded from...
24728configure.ac:14: the top level
24729configure.ac:21: warning: The macro 'AC_HELP_STRING' is obsolete.
24730configure.ac:21: You should run autoupdate.
24731/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
24732/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
24733acinclude.m4:2989: AC_ENABLE_SHARED is expanded from...
24734acinclude.m4:3018: AC_DISABLE_SHARED is expanded from...
24735configure.ac:21: the top level
24736configure.ac:98: warning: The macro 'AC_TRY_LINK' is obsolete.
24737configure.ac:98: You should run autoupdate.
24738/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
24739configure.ac:98: the top level
24740configure.ac:107: warning: The macro 'AC_TRY_COMPILE' is obsolete.
24741configure.ac:107: You should run autoupdate.
24742/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from...
24743configure.ac:107: the top level
24744configure.ac:161: warning: The macro 'ac_cv_prog_gcc' is obsolete.
24745configure.ac:161: You should run autoupdate.
24746/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/c.m4:448: ac_cv_prog_gcc is expanded from...
24747acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24748configure.ac:161: the top level
24749configure.ac:161: warning: The macro 'ac_cv_prog_g77' is obsolete.
24750configure.ac:161: You should run autoupdate.
24751/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/fortran.m4:269: ac_cv_prog_g77 is expanded from...
24752acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24753configure.ac:161: the top level
24754configure.ac:161: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
24755/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24756/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24757acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24758acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24759configure.ac:161: the top level
24760configure.ac:161: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
24761/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24762/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24763acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24764acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24765configure.ac:161: the top level
24766configure.ac:161: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
24767/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24768/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24769acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24770acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24771configure.ac:161: the top level
24772configure.ac:161: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
24773/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24774/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24775acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24776acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24777configure.ac:161: the top level
24778configure.ac:161: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
24779/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24780/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24781acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24782acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24783configure.ac:161: the top level
24784configure.ac:161: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
24785/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24786/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24787acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24788acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24789configure.ac:161: the top level
24790configure.ac:161: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
24791/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24792/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24793acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24794acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24795configure.ac:161: the top level
24796configure.ac:161: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
24797/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24798/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24799acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24800acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24801configure.ac:161: the top level
24802configure.ac:161: warning: AC_CACHE_VAL(ac_msse2, ...): suspicious cache-id, must contain _cv_ to be cached
24803/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24804/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24805acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24806acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24807configure.ac:161: the top level
24808configure.ac:161: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
24809/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24810/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24811acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24812acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24813configure.ac:161: the top level
24814configure.ac:161: warning: AC_CACHE_VAL(ac_stdgnu99, ...): suspicious cache-id, must contain _cv_ to be cached
24815/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24816/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24817acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24818acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24819configure.ac:161: the top level
24820configure.ac:161: warning: AC_CACHE_VAL(ac_fexcess_precision_fast, ...): suspicious cache-id, must contain _cv_ to be cached
24821/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24822/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24823acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24824acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24825configure.ac:161: the top level
24826configure.ac:161: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
24827/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24828/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24829acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
24830acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24831configure.ac:161: the top level
24832configure.ac:161: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
24833/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24834/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24835acinclude.m4:281: ACX_CHECK_F77_FLAGS is expanded from...
24836acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
24837configure.ac:161: the top level
24838configure.ac:186: warning: The macro 'AC_TRY_COMPILE' is obsolete.
24839configure.ac:186: You should run autoupdate.
24840/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from...
24841configure.ac:186: the top level
24842configure.ac:197: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
24843/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24844/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24845acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
24846configure.ac:197: the top level
24847configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
24848configure.ac:204: You should run autoupdate.
24849/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
24850/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
24851acinclude.m4:3028: AC_ENABLE_STATIC is expanded from...
24852acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24853acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24854acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24855configure.ac:204: the top level
24856configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
24857configure.ac:204: You should run autoupdate.
24858/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
24859/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
24860acinclude.m4:3067: AC_ENABLE_FAST_INSTALL is expanded from...
24861acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24862acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24863acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24864configure.ac:204: the top level
24865configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
24866configure.ac:204: You should run autoupdate.
24867/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
24868/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from...
24869acinclude.m4:3208: AC_PROG_LD is expanded from...
24870acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24871acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24872acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24873configure.ac:204: the top level
24874configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
24875configure.ac:204: You should run autoupdate.
24876/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
24877/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
24878acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24879acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24880acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24881configure.ac:204: the top level
24882configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
24883configure.ac:204: You should run autoupdate.
24884/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
24885/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from...
24886acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24887acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24888acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24889configure.ac:204: the top level
24890configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
24891/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24892/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24893acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
24894acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
24895acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
24896acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
24897acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24898acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24899acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24900configure.ac:204: the top level
24901configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
24902/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24903/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24904acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
24905acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
24906acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
24907acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
24908acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24909acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24910acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24911configure.ac:204: the top level
24912configure.ac:204: warning: The macro 'AC_TRY_LINK' is obsolete.
24913configure.ac:204: You should run autoupdate.
24914/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
24915/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from...
24916/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/m4sugar/m4sh.m4:697: AS_IF is expanded from...
24917/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24918/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24919acinclude.m4:1548: _LT_AC_LOCK is expanded from...
24920acinclude.m4:2153: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
24921acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
24922acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
24923acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24924acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24925acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24926configure.ac:204: the top level
24927configure.ac:204: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
24928/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/lang.m4:199: AC_LANG_CONFTEST is expanded from...
24929/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2892: _AC_LINK_IFELSE is expanded from...
24930/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2909: AC_LINK_IFELSE is expanded from...
24931acinclude.m4:1368: _LT_AC_SYS_LIBPATH_AIX is expanded from...
24932acinclude.m4:6422: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
24933acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
24934acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
24935acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24936acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24937acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24938configure.ac:204: the top level
24939configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
24940configure.ac:204: You should run autoupdate.
24941/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
24942/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from...
24943acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
24944acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24945acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24946acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24947configure.ac:204: the top level
24948configure.ac:204: warning: back quotes and double quotes must not be escaped in: tag name \"$tagname\" already exists
24949acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
24950acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24951acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24952acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24953configure.ac:204: the top level
24954configure.ac:204: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
24955/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/lang.m4:199: AC_LANG_CONFTEST is expanded from...
24956/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2892: _AC_LINK_IFELSE is expanded from...
24957/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2909: AC_LINK_IFELSE is expanded from...
24958acinclude.m4:1368: _LT_AC_SYS_LIBPATH_AIX is expanded from...
24959acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from...
24960acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
24961acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
24962acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24963acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24964acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24965configure.ac:204: the top level
24966configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
24967/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24968/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24969acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
24970acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
24971acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from...
24972acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
24973acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
24974acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24975acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24976acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24977configure.ac:204: the top level
24978configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
24979/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24980/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24981acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
24982acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
24983acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from...
24984acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
24985acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
24986acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24987acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
24988acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
24989configure.ac:204: the top level
24990configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
24991/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
24992/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
24993acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
24994acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
24995acinclude.m4:4979: _LT_AC_LANG_F77_CONFIG is expanded from...
24996acinclude.m4:4978: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
24997acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
24998acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
24999acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25000acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25001configure.ac:204: the top level
25002configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
25003/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25004/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25005acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
25006acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25007acinclude.m4:4979: _LT_AC_LANG_F77_CONFIG is expanded from...
25008acinclude.m4:4978: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
25009acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25010acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25011acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25012acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25013configure.ac:204: the top level
25014configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
25015/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25016/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25017acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
25018acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25019acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
25020acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
25021acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25022acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25023acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25024acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25025configure.ac:204: the top level
25026configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
25027/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25028/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25029acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
25030acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25031acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
25032acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
25033acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25034acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25035acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25036acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25037configure.ac:204: the top level
25038configure.ac:204: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
25039/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/lang.m4:199: AC_LANG_CONFTEST is expanded from...
25040/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2892: _AC_LINK_IFELSE is expanded from...
25041/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2909: AC_LINK_IFELSE is expanded from...
25042acinclude.m4:1368: _LT_AC_SYS_LIBPATH_AIX is expanded from...
25043acinclude.m4:6422: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
25044acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
25045acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
25046acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25047acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25048acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25049acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25050configure.ac:204: the top level
25051configure.ac:241: warning: The macro 'AC_TRY_LINK' is obsolete.
25052configure.ac:241: You should run autoupdate.
25053/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25054configure.ac:241: the top level
25055configure.ac:266: warning: The macro 'AC_TYPE_SIGNAL' is obsolete.
25056configure.ac:266: You should run autoupdate.
25057/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/types.m4:805: AC_TYPE_SIGNAL is expanded from...
25058configure.ac:266: the top level
25059configure.ac:337: warning: The macro 'AC_TRY_LINK' is obsolete.
25060configure.ac:337: You should run autoupdate.
25061/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25062configure.ac:337: the top level
25063configure.ac:341: warning: The macro 'AC_TRY_LINK' is obsolete.
25064configure.ac:341: You should run autoupdate.
25065/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25066configure.ac:341: the top level
25067cd xdrfile-1.1.4 ; MSYS2_ARG_CONV_EXCL=/OUT CC='cl -EHa -GR -GF -MD ' CXX='cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 ' LDFLAGS=" -Ox -W2" CFLAGS= ./configure --enable-shared --with-pic
25068checking build system type... x86_64-unknown-cygwin
25069checking host system type... x86_64-unknown-cygwin
25070checking for a BSD-compatible install... /usr/bin/install -c
25071checking whether build environment is sane... yes
25072checking for gawk... gawk
25073checking whether make sets $(MAKE)... yes
25074checking how to create a ustar tar archive... gnutar
25075checking whether the C compiler works... yes
25076checking for C compiler default output file name... conftest.exe
25077checking for suffix of executables... .exe
25078checking whether we are cross compiling... no
25079checking for suffix of object files... obj
25080checking whether the compiler supports GNU C... no
25081checking whether cl -EHa -GR -GF -MD accepts -g... yes
25082checking for cl -EHa -GR -GF -MD option to enable C11 features... unsupported
25083checking for cl -EHa -GR -GF -MD option to enable C99 features... unsupported
25084checking for cl -EHa -GR -GF -MD option to enable C89 features... unsupported
25085checking for style of include used by make... GNU
25086checking dependency style of cl -EHa -GR -GF -MD ... none
25087checking how to run the C preprocessor... cl -EHa -GR -GF -MD -E
25088********************************************************************
25089* Note: We have not optimized the C compiler flags on your target *
25090* yet, but the default CFLAGS=-O3 should be OK in most cases. *
25091* You can override this by setting the CFLAGS environment variable.*
25092*******************************************************************
25093checking whether cl -EHa -GR -GF -MD accepts -O3... no
25094*******************************************************************
25095* Sorry, these optimization settings don't seem to work for *
25096* your C compiler. Use make CFLAGS=..., or edit the top Makefile. *
25097*******************************************************************
25098checking for stdio.h... yes
25099checking for stdlib.h... yes
25100checking for string.h... yes
25101checking for inttypes.h... yes
25102checking for stdint.h... yes
25103checking for strings.h... no
25104checking for sys/stat.h... yes
25105checking for sys/types.h... yes
25106checking for unistd.h... no
25107checking whether byte ordering is bigendian... no
25108checking size of int... 4
25109checking size of long int... 4
25110checking size of long long int... 8
25111checking that size_t can hold pointers... yes
25112checking floating-point format... configure: WARNING: Unknown floating-point format
25113
25114checking whether ln -s works... yes
25115checking whether make sets $(MAKE)... (cached) yes
25116checking for a sed that does not truncate output... /usr/bin/sed
25117checking for grep that handles long lines and -e... /usr/bin/grep
25118checking for egrep... /usr/bin/grep -E
25119checking for non-GNU ld... /usr/bin/ld
25120checking if the linker (/usr/bin/ld) is GNU ld... yes
25121checking for /usr/bin/ld option to reload object files... -r
25122checking for BSD-compatible nm... /usr/bin/nm -B
25123checking how to recognise dependent libraries... file_magic ^x86 archive import|^x86 DLL
25124checking for dlltool... dlltool
25125checking for as... as
25126checking for objdump... objdump
25127checking for dlfcn.h... no
25128checking whether the compiler supports GNU C++... no
25129checking whether cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 accepts -g... yes
25130checking for cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 option to enable C++11 features... unsupported
25131checking for cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 option to enable C++98 features... none needed
25132checking dependency style of cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 ... none
25133checking how to run the C++ preprocessor... cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 -E
25134checking the maximum length of command line arguments... 8192
25135checking command to parse /usr/bin/nm -B output from cl -EHa -GR -GF -MD object... failed
25136checking for objdir... .libs
25137checking for ar... ar
25138checking for ranlib... ranlib
25139checking for strip... strip
25140checking for cl -EHa -GR -GF -MD option to produce PIC...
25141checking if cl -EHa -GR -GF -MD static flag works... yes
25142checking if cl -EHa -GR -GF -MD supports -c -o file.obj... no
25143checking if we can lock with hard links... yes
25144checking whether the cl -EHa -GR -GF -MD linker (/usr/bin/ld) supports shared libraries... yes
25145checking dynamic linker characteristics... Win32 ld.exe
25146checking how to hardcode library paths into programs... immediate
25147checking whether stripping libraries is possible... yes
25148checking if libtool supports shared libraries... yes
25149checking whether to build shared libraries... yes
25150checking whether to build static libraries... yes
25151configure: creating libtool
25152cygpath: can't convert empty path
25153appending configuration tag "CXX" to libtool
25154checking whether the cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 linker (/usr/bin/ld) supports shared libraries... yes
25155checking for cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 option to produce PIC...
25156checking if cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 static flag works... yes
25157checking if cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 supports -c -o file.obj... no
25158checking if we can lock with hard links... yes
25159checking whether the cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 linker (/usr/bin/ld) supports shared libraries... yes
25160checking dynamic linker characteristics... Win32 ld.exe
25161checking how to hardcode library paths into programs... immediate
25162appending configuration tag "F77" to libtool
25163checking for cl -EHa -GR -GF -MD option to enable large file support... support not detected
25164checking for declarations of fseeko and ftello... no
25165configure: Using built-in math library with intel compiler
25166checking for working memcmp... yes
25167checking return type of signal handlers... void
25168checking for vprintf... no
25169checking for _doprnt... no
25170checking if malloc debugging is wanted... no
25171checking for strcasecmp... no
25172checking for strdup... yes
25173checking for bool... no
25174checking for limits.h... yes
25175checking for unistd.h... (cached) no
25176checking for an ANSI C-conforming const... yes
25177checking for size_t... yes
25178checking whether struct tm is in sys/time.h or time.h... time.h
25179checking for uid_t... no
25180checking for gid_t... no
25181checking for inline... inline
25182checking whether byte ordering is bigendian... (cached) no
25183configure: creating ./config.status
25184config.status: creating Makefile
25185config.status: creating include/Makefile
25186config.status: creating src/Makefile
25187config.status: creating src/python/Makefile
25188config.status: creating config.h
25189config.status: executing depfiles commands
25190
25191cd xdrfile-1.1.4 ; MSYS2_ARG_CONV_EXCL=/OUT CC='cl -EHa -GR -GF -MD ' CXX='cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 ' LDFLAGS=" -Ox -W2" CFLAGS= make
25192make[8]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4'
25193cd . && /bin/sh /home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/config/missing --run aclocal-1.9
25194/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/config/missing: line 52: aclocal-1.9: command not found
25195WARNING: `aclocal-1.9' is missing on your system. You should only need it if
25196 you modified `acinclude.m4' or `configure.ac'. You might want
25197 to install the `Automake' and `Perl' packages. Grab them from
25198 any GNU archive site.
25199 cd . && /bin/sh /home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/config/missing --run automake-1.9 --foreign
25200/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/config/missing: line 52: automake-1.9: command not found
25201WARNING: `automake-1.9' is missing on your system. You should only need it if
25202 you modified `Makefile.am', `acinclude.m4' or `configure.ac'.
25203 You might want to install the `Automake' and `Perl' packages.
25204 Grab them from any GNU archive site.
25205cd . && /bin/sh /home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/config/missing --run autoconf
25206configure.ac:11: warning: The macro 'AC_FOREACH' is obsolete.
25207configure.ac:11: You should run autoupdate.
25208/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:191: AC_FOREACH is expanded from...
25209aclocal.m4:727: _AM_SET_OPTIONS is expanded from...
25210aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from...
25211configure.ac:11: the top level
25212configure.ac:14: warning: The macro 'AM_CONFIG_HEADER' is obsolete.
25213configure.ac:14: You should run autoupdate.
25214aclocal.m4:402: AM_CONFIG_HEADER is expanded from...
25215configure.ac:14: the top level
25216configure.ac:21: warning: The macro 'AC_HELP_STRING' is obsolete.
25217configure.ac:21: You should run autoupdate.
25218/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
25219/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
25220acinclude.m4:2989: AC_ENABLE_SHARED is expanded from...
25221acinclude.m4:3018: AC_DISABLE_SHARED is expanded from...
25222configure.ac:21: the top level
25223configure.ac:98: warning: The macro 'AC_TRY_LINK' is obsolete.
25224configure.ac:98: You should run autoupdate.
25225/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25226configure.ac:98: the top level
25227configure.ac:107: warning: The macro 'AC_TRY_COMPILE' is obsolete.
25228configure.ac:107: You should run autoupdate.
25229/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from...
25230configure.ac:107: the top level
25231configure.ac:161: warning: The macro 'ac_cv_prog_gcc' is obsolete.
25232configure.ac:161: You should run autoupdate.
25233/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/c.m4:448: ac_cv_prog_gcc is expanded from...
25234acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25235configure.ac:161: the top level
25236configure.ac:161: warning: The macro 'ac_cv_prog_g77' is obsolete.
25237configure.ac:161: You should run autoupdate.
25238/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/fortran.m4:269: ac_cv_prog_g77 is expanded from...
25239acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25240configure.ac:161: the top level
25241configure.ac:161: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
25242/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25243/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25244acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25245acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25246configure.ac:161: the top level
25247configure.ac:161: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
25248/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25249/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25250acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25251acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25252configure.ac:161: the top level
25253configure.ac:161: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
25254/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25255/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25256acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25257acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25258configure.ac:161: the top level
25259configure.ac:161: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
25260/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25261/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25262acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25263acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25264configure.ac:161: the top level
25265configure.ac:161: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
25266/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25267/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25268acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25269acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25270configure.ac:161: the top level
25271configure.ac:161: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
25272/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25273/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25274acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25275acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25276configure.ac:161: the top level
25277configure.ac:161: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
25278/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25279/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25280acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25281acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25282configure.ac:161: the top level
25283configure.ac:161: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
25284/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25285/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25286acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25287acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25288configure.ac:161: the top level
25289configure.ac:161: warning: AC_CACHE_VAL(ac_msse2, ...): suspicious cache-id, must contain _cv_ to be cached
25290/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25291/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25292acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25293acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25294configure.ac:161: the top level
25295configure.ac:161: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
25296/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25297/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25298acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25299acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25300configure.ac:161: the top level
25301configure.ac:161: warning: AC_CACHE_VAL(ac_stdgnu99, ...): suspicious cache-id, must contain _cv_ to be cached
25302/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25303/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25304acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25305acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25306configure.ac:161: the top level
25307configure.ac:161: warning: AC_CACHE_VAL(ac_fexcess_precision_fast, ...): suspicious cache-id, must contain _cv_ to be cached
25308/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25309/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25310acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25311acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25312configure.ac:161: the top level
25313configure.ac:161: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
25314/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25315/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25316acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
25317acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25318configure.ac:161: the top level
25319configure.ac:161: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
25320/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25321/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25322acinclude.m4:281: ACX_CHECK_F77_FLAGS is expanded from...
25323acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
25324configure.ac:161: the top level
25325configure.ac:186: warning: The macro 'AC_TRY_COMPILE' is obsolete.
25326configure.ac:186: You should run autoupdate.
25327/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from...
25328configure.ac:186: the top level
25329configure.ac:197: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
25330/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25331/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25332acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
25333configure.ac:197: the top level
25334configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
25335configure.ac:204: You should run autoupdate.
25336/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
25337/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
25338acinclude.m4:3028: AC_ENABLE_STATIC is expanded from...
25339acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25340acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25341acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25342configure.ac:204: the top level
25343configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
25344configure.ac:204: You should run autoupdate.
25345/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
25346/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
25347acinclude.m4:3067: AC_ENABLE_FAST_INSTALL is expanded from...
25348acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25349acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25350acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25351configure.ac:204: the top level
25352configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
25353configure.ac:204: You should run autoupdate.
25354/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
25355/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from...
25356acinclude.m4:3208: AC_PROG_LD is expanded from...
25357acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25358acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25359acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25360configure.ac:204: the top level
25361configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
25362configure.ac:204: You should run autoupdate.
25363/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
25364/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
25365acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25366acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25367acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25368configure.ac:204: the top level
25369configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
25370configure.ac:204: You should run autoupdate.
25371/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
25372/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from...
25373acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25374acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25375acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25376configure.ac:204: the top level
25377configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
25378/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25379/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25380acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
25381acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25382acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
25383acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
25384acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25385acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25386acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25387configure.ac:204: the top level
25388configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
25389/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25390/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25391acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
25392acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25393acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
25394acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
25395acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25396acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25397acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25398configure.ac:204: the top level
25399configure.ac:204: warning: The macro 'AC_TRY_LINK' is obsolete.
25400configure.ac:204: You should run autoupdate.
25401/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25402/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from...
25403/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/m4sugar/m4sh.m4:697: AS_IF is expanded from...
25404/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25405/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25406acinclude.m4:1548: _LT_AC_LOCK is expanded from...
25407acinclude.m4:2153: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
25408acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
25409acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
25410acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25411acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25412acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25413configure.ac:204: the top level
25414configure.ac:204: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
25415/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/lang.m4:199: AC_LANG_CONFTEST is expanded from...
25416/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2892: _AC_LINK_IFELSE is expanded from...
25417/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2909: AC_LINK_IFELSE is expanded from...
25418acinclude.m4:1368: _LT_AC_SYS_LIBPATH_AIX is expanded from...
25419acinclude.m4:6422: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
25420acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
25421acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
25422acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25423acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25424acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25425configure.ac:204: the top level
25426configure.ac:204: warning: The macro 'AC_HELP_STRING' is obsolete.
25427configure.ac:204: You should run autoupdate.
25428/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
25429/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from...
25430acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25431acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25432acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25433acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25434configure.ac:204: the top level
25435configure.ac:204: warning: back quotes and double quotes must not be escaped in: tag name \"$tagname\" already exists
25436acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25437acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25438acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25439acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25440configure.ac:204: the top level
25441configure.ac:204: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
25442/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/lang.m4:199: AC_LANG_CONFTEST is expanded from...
25443/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2892: _AC_LINK_IFELSE is expanded from...
25444/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2909: AC_LINK_IFELSE is expanded from...
25445acinclude.m4:1368: _LT_AC_SYS_LIBPATH_AIX is expanded from...
25446acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from...
25447acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
25448acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25449acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25450acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25451acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25452configure.ac:204: the top level
25453configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
25454/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25455/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25456acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
25457acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25458acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from...
25459acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
25460acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25461acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25462acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25463acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25464configure.ac:204: the top level
25465configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
25466/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25467/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25468acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
25469acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25470acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from...
25471acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
25472acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25473acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25474acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25475acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25476configure.ac:204: the top level
25477configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
25478/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25479/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25480acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
25481acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25482acinclude.m4:4979: _LT_AC_LANG_F77_CONFIG is expanded from...
25483acinclude.m4:4978: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
25484acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25485acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25486acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25487acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25488configure.ac:204: the top level
25489configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
25490/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25491/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25492acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
25493acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25494acinclude.m4:4979: _LT_AC_LANG_F77_CONFIG is expanded from...
25495acinclude.m4:4978: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
25496acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25497acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25498acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25499acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25500configure.ac:204: the top level
25501configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
25502/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25503/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25504acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
25505acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25506acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
25507acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
25508acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25509acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25510acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25511acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25512configure.ac:204: the top level
25513configure.ac:204: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
25514/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
25515/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
25516acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
25517acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
25518acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
25519acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
25520acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25521acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25522acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25523acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25524configure.ac:204: the top level
25525configure.ac:204: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
25526/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/lang.m4:199: AC_LANG_CONFTEST is expanded from...
25527/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2892: _AC_LINK_IFELSE is expanded from...
25528/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2909: AC_LINK_IFELSE is expanded from...
25529acinclude.m4:1368: _LT_AC_SYS_LIBPATH_AIX is expanded from...
25530acinclude.m4:6422: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
25531acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
25532acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
25533acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
25534acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
25535acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
25536acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
25537configure.ac:204: the top level
25538configure.ac:241: warning: The macro 'AC_TRY_LINK' is obsolete.
25539configure.ac:241: You should run autoupdate.
25540/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25541configure.ac:241: the top level
25542configure.ac:266: warning: The macro 'AC_TYPE_SIGNAL' is obsolete.
25543configure.ac:266: You should run autoupdate.
25544/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/types.m4:805: AC_TYPE_SIGNAL is expanded from...
25545configure.ac:266: the top level
25546configure.ac:337: warning: The macro 'AC_TRY_LINK' is obsolete.
25547configure.ac:337: You should run autoupdate.
25548/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25549configure.ac:337: the top level
25550configure.ac:341: warning: The macro 'AC_TRY_LINK' is obsolete.
25551configure.ac:341: You should run autoupdate.
25552/mnt/share/cygpkgs/autoconf2.7/autoconf2.7.noarch/src/autoconf-2.72/lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
25553configure.ac:341: the top level
25554/bin/sh ./config.status --recheck
25555running CONFIG_SHELL=/bin/sh /bin/sh ./configure --enable-shared --with-pic CC=cl -EHa -GR -GF -MD CFLAGS= LDFLAGS= -Ox -W2 CXX=cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 --no-create --no-recursion
25556checking build system type... x86_64-unknown-cygwin
25557checking host system type... x86_64-unknown-cygwin
25558checking for a BSD-compatible install... /usr/bin/install -c
25559checking whether build environment is sane... yes
25560checking for gawk... gawk
25561checking whether make sets $(MAKE)... yes
25562checking how to create a ustar tar archive... gnutar
25563checking whether the C compiler works... yes
25564checking for C compiler default output file name... conftest.exe
25565checking for suffix of executables... .exe
25566checking whether we are cross compiling... no
25567checking for suffix of object files... obj
25568checking whether the compiler supports GNU C... no
25569checking whether cl -EHa -GR -GF -MD accepts -g... yes
25570checking for cl -EHa -GR -GF -MD option to enable C11 features... unsupported
25571checking for cl -EHa -GR -GF -MD option to enable C99 features... unsupported
25572checking for cl -EHa -GR -GF -MD option to enable C89 features... unsupported
25573checking for style of include used by make... GNU
25574checking dependency style of cl -EHa -GR -GF -MD ... none
25575checking how to run the C preprocessor... cl -EHa -GR -GF -MD -E
25576********************************************************************
25577* Note: We have not optimized the C compiler flags on your target *
25578* yet, but the default CFLAGS=-O3 should be OK in most cases. *
25579* You can override this by setting the CFLAGS environment variable.*
25580*******************************************************************
25581checking whether cl -EHa -GR -GF -MD accepts -O3... no
25582*******************************************************************
25583* Sorry, these optimization settings don't seem to work for *
25584* your C compiler. Use make CFLAGS=..., or edit the top Makefile. *
25585*******************************************************************
25586checking for stdio.h... yes
25587checking for stdlib.h... yes
25588checking for string.h... yes
25589checking for inttypes.h... yes
25590checking for stdint.h... yes
25591checking for strings.h... no
25592checking for sys/stat.h... yes
25593checking for sys/types.h... yes
25594checking for unistd.h... no
25595checking whether byte ordering is bigendian... no
25596checking size of int... 4
25597checking size of long int... 4
25598checking size of long long int... 8
25599checking that size_t can hold pointers... yes
25600checking floating-point format... configure: WARNING: Unknown floating-point format
25601
25602checking whether ln -s works... yes
25603checking whether make sets $(MAKE)... (cached) yes
25604checking for a sed that does not truncate output... /usr/bin/sed
25605checking for grep that handles long lines and -e... /usr/bin/grep
25606checking for egrep... /usr/bin/grep -E
25607checking for non-GNU ld... /usr/bin/ld
25608checking if the linker (/usr/bin/ld) is GNU ld... yes
25609checking for /usr/bin/ld option to reload object files... -r
25610checking for BSD-compatible nm... /usr/bin/nm -B
25611checking how to recognise dependent libraries... file_magic ^x86 archive import|^x86 DLL
25612checking for dlltool... dlltool
25613checking for as... as
25614checking for objdump... objdump
25615checking for dlfcn.h... no
25616checking whether the compiler supports GNU C++... no
25617checking whether cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 accepts -g... yes
25618checking for cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 option to enable C++11 features... unsupported
25619checking for cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 option to enable C++98 features... none needed
25620checking dependency style of cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 ... none
25621checking how to run the C++ preprocessor... cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 -E
25622checking the maximum length of command line arguments... 8192
25623checking command to parse /usr/bin/nm -B output from cl -EHa -GR -GF -MD object... failed
25624checking for objdir... .libs
25625checking for ar... ar
25626checking for ranlib... ranlib
25627checking for strip... strip
25628checking for cl -EHa -GR -GF -MD option to produce PIC...
25629checking if cl -EHa -GR -GF -MD static flag works... yes
25630checking if cl -EHa -GR -GF -MD supports -c -o file.obj... no
25631checking if we can lock with hard links... yes
25632checking whether the cl -EHa -GR -GF -MD linker (/usr/bin/ld) supports shared libraries... yes
25633checking dynamic linker characteristics... Win32 ld.exe
25634checking how to hardcode library paths into programs... immediate
25635checking whether stripping libraries is possible... yes
25636checking if libtool supports shared libraries... yes
25637checking whether to build shared libraries... yes
25638checking whether to build static libraries... yes
25639configure: creating libtool
25640cygpath: can't convert empty path
25641appending configuration tag "CXX" to libtool
25642checking whether the cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 linker (/usr/bin/ld) supports shared libraries... yes
25643checking for cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 option to produce PIC...
25644checking if cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 static flag works... yes
25645checking if cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 supports -c -o file.obj... no
25646checking if we can lock with hard links... yes
25647checking whether the cl -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 linker (/usr/bin/ld) supports shared libraries... yes
25648checking dynamic linker characteristics... Win32 ld.exe
25649checking how to hardcode library paths into programs... immediate
25650appending configuration tag "F77" to libtool
25651checking for cl -EHa -GR -GF -MD option to enable large file support... support not detected
25652checking for declarations of fseeko and ftello... no
25653configure: Using built-in math library with intel compiler
25654checking for working memcmp... yes
25655checking return type of signal handlers... void
25656checking for vprintf... no
25657checking for _doprnt... no
25658checking if malloc debugging is wanted... no
25659checking for strcasecmp... no
25660checking for strdup... yes
25661checking for bool... no
25662checking for limits.h... yes
25663checking for unistd.h... (cached) no
25664checking for an ANSI C-conforming const... yes
25665checking for size_t... yes
25666checking whether struct tm is in sys/time.h or time.h... time.h
25667checking for uid_t... no
25668checking for gid_t... no
25669checking for inline... inline
25670checking whether byte ordering is bigendian... (cached) no
25671configure: creating ./config.status
25672
25673 /bin/sh ./config.status
25674config.status: creating Makefile
25675config.status: creating include/Makefile
25676config.status: creating src/Makefile
25677config.status: creating src/python/Makefile
25678config.status: creating config.h
25679config.status: executing depfiles commands
25680cd . && /bin/sh /home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/config/missing --run autoheader
25681rm -f stamp-h1
25682touch config.h.in
25683cd . && /bin/sh ./config.status config.h
25684config.status: creating config.h
25685make all-recursive
25686make[9]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4'
25687Making all in include
25688make[10]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/include'
25689make[10]: Nothing to be done for 'all'.
25690make[10]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/include'
25691Making all in src
25692make[10]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/src'
25693Making all in python
25694make[11]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/src/python'
25695make[11]: Nothing to be done for 'all'.
25696make[11]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/src/python'
25697make[11]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/src'
25698source='xdrfile.c' object='xdrfile.lo' libtool=yes \
25699DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \
25700/bin/sh ../libtool --tag=CC --mode=compile cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c -o xdrfile.lo xdrfile.c
25701cygpath: can't convert empty path
25702mkdir .libs
25703 cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c xdrfile.c -DPIC
25704Microsoft (R) C/C++ Optimizing Compiler Version 19.29.30152 for x64
25705Copyright (C) Microsoft Corporation. All rights reserved.
25706
25707xdrfile.c
25708mv -f xdrfile.obj .libs/xdrfile.obj
25709 cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c xdrfile.c >/dev/null 2>&1
25710source='xdrfile_trr.c' object='xdrfile_trr.lo' libtool=yes \
25711DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \
25712/bin/sh ../libtool --tag=CC --mode=compile cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c -o xdrfile_trr.lo xdrfile_trr.c
25713cygpath: can't convert empty path
25714 cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c xdrfile_trr.c -DPIC
25715Microsoft (R) C/C++ Optimizing Compiler Version 19.29.30152 for x64
25716Copyright (C) Microsoft Corporation. All rights reserved.
25717
25718xdrfile_trr.c
25719mv -f xdrfile_trr.obj .libs/xdrfile_trr.obj
25720 cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c xdrfile_trr.c >/dev/null 2>&1
25721source='xdrfile_xtc.c' object='xdrfile_xtc.lo' libtool=yes \
25722DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \
25723/bin/sh ../libtool --tag=CC --mode=compile cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c -o xdrfile_xtc.lo xdrfile_xtc.c
25724cygpath: can't convert empty path
25725 cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c xdrfile_xtc.c -DPIC
25726Microsoft (R) C/C++ Optimizing Compiler Version 19.29.30152 for x64
25727Copyright (C) Microsoft Corporation. All rights reserved.
25728
25729xdrfile_xtc.c
25730mv -f xdrfile_xtc.obj .libs/xdrfile_xtc.obj
25731 cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c xdrfile_xtc.c >/dev/null 2>&1
25732/bin/sh ../libtool --tag=CC --mode=link cl -EHa -GR -GF -MD -Ox -W2 -o libxdrfile.la -rpath /usr/local//lib -version-info 4:0:0 xdrfile.lo xdrfile_trr.lo xdrfile_xtc.lo
25733cygpath: can't convert empty path
25734libtool: link: warning: undefined symbols not allowed in x86_64-unknown-cygwin shared libraries
25735lib /OUT:.libs/libxdrfile.lib xdrfile.obj xdrfile_trr.obj xdrfile_xtc.obj
25736Microsoft (R) Library Manager Version 14.29.30152.0
25737Copyright (C) Microsoft Corporation. All rights reserved.
25738
25739creating libxdrfile.la
25740(cd .libs && rm -f libxdrfile.la && ln -s ../libxdrfile.la libxdrfile.la)
25741source='trr2xtc.c' object='trr2xtc.obj' libtool=no \
25742DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \
25743cl -EHa -GR -GF -MD -DHAVE_CONFIG_H -I. -I. -I.. -I../include -D_LARGEFILE_SOURCE=1 -c `cygpath -w 'trr2xtc.c'`
25744Microsoft (R) C/C++ Optimizing Compiler Version 19.29.30152 for x64
25745Copyright (C) Microsoft Corporation. All rights reserved.
25746
25747trr2xtc.c
25748/bin/sh ../libtool --tag=CC --mode=link cl -EHa -GR -GF -MD -Ox -W2 -o trr2xtc.exe trr2xtc.obj libxdrfile.la
25749cygpath: can't convert empty path
25750cl -EHa -GR -GF -MD -Ox -W2 -o trr2xtc.exe trr2xtc.obj ./.libs/libxdrfile.lib
25751Microsoft (R) C/C++ Optimizing Compiler Version 19.29.30152 for x64
25752Copyright (C) Microsoft Corporation. All rights reserved.
25753
25754cl : Command line warning D9035 : option 'o' has been deprecated and will be removed in a future release
25755Microsoft (R) Incremental Linker Version 14.29.30152.0
25756Copyright (C) Microsoft Corporation. All rights reserved.
25757
25758/out:trr2xtc.exe
25759/out:trr2xtc.exe
25760trr2xtc.obj
25761./.libs/libxdrfile.lib
25762make[11]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/src'
25763make[10]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4/src'
25764make[10]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4'
25765make[10]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4'
25766make[9]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4'
25767make[8]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs/xdrfile-1.1.4'
25768make[7]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
25769make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds/gromacs'
25770if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
25771 echo "missing ChimeraX application's python"; exit 1; \
25772else \
25773 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
25774fi
25775INFO:
25776Executing: devel build . exit true
25777C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
25778 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
25779C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
25780!!
25781
25782 ********************************************************************************
25783 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
25784
25785 By 2026-Feb-18, you need to update your project and remove deprecated calls
25786 or your builds will no longer be supported.
25787
25788 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
25789 ********************************************************************************
25790
25791!!
25792 corresp(dist, value, root_dir)
25793running build
25794running build_py
25795creating build\lib.win-amd64-cpython-311\chimerax\md_crds
25796copying src\gui.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25797copying src\manager.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25798copying src\providers.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25799copying src\read_coords.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25800copying src\read_gro.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25801copying src\read_lammps.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25802copying src\read_psf.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25803copying src\util.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25804copying src\write_coords.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25805copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds
25806creating build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd
25807copying src\dcd\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd
25808creating build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25809copying src\dcd\MDToolsMarch97\md.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25810copying src\dcd\MDToolsMarch97\md_AtomGroup.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25811copying src\dcd\MDToolsMarch97\md_Constants.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25812copying src\dcd\MDToolsMarch97\md_Data.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25813copying src\dcd\MDToolsMarch97\md_DCD.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25814copying src\dcd\MDToolsMarch97\md_HomoCoord.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25815copying src\dcd\MDToolsMarch97\md_local.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25816copying src\dcd\MDToolsMarch97\md_local_open.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25817copying src\dcd\MDToolsMarch97\md_local_rasmol.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25818copying src\dcd\MDToolsMarch97\md_local_xmgr.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25819copying src\dcd\MDToolsMarch97\md_tests.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25820copying src\dcd\MDToolsMarch97\md_Trans.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25821copying src\dcd\MDToolsMarch97\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97
25822creating build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\data
25823copying src\dcd\MDToolsMarch97\data\alanin.dcd -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\data
25824copying src\dcd\MDToolsMarch97\data\alanin.pdb -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\data
25825copying src\dcd\MDToolsMarch97\data\alanin.psf -> build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\data
25826running build_ext
25827building 'chimerax.md_crds._gromacs' extension
25828creating build\temp.win-amd64-cpython-311\Release\gromacs
25829"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=1 -DMINOR_VERSION=0 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -Igromacs/xdrfile-1.1.4/include -Isrc/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpgromacs/gromacs.cpp /Fobuild\temp.win-amd64-cpython-311\Release\gromacs\gromacs.obj /std:c++11
25830cl : Command line warning D9002 : ignoring unknown option '/std:c++11'
25831gromacs.cpp
25832"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:src/lib /LIBPATH:gromacs/xdrfile-1.1.4/src/.libs/ /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libxdrfile.lib /EXPORT:PyInit__gromacs build\temp.win-amd64-cpython-311\Release\gromacs\gromacs.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\md_crds\_gromacs.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\gromacs\_gromacs.cp311-win_amd64.lib
25833 Creating library build\temp.win-amd64-cpython-311\Release\gromacs\_gromacs.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\gromacs\_gromacs.cp311-win_amd64.exp
25834Generating code
25835Finished generating code
25836running bdist_wheel
25837installing to build\bdist.win-amd64\wheel
25838running install
25839running install_lib
25840running build_ext
25841creating build\bdist.win-amd64\wheel
25842creating build\bdist.win-amd64\wheel\chimerax
25843creating build\bdist.win-amd64\wheel\chimerax\md_crds
25844creating build\bdist.win-amd64\wheel\chimerax\md_crds\dcd
25845creating build\bdist.win-amd64\wheel\chimerax\md_crds\dcd\MDToolsMarch97
25846creating build\bdist.win-amd64\wheel\chimerax\md_crds\dcd\MDToolsMarch97\data
25847copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\data\alanin.dcd -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97\data
25848copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\data\alanin.pdb -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97\data
25849copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\data\alanin.psf -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97\data
25850copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25851copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_AtomGroup.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25852copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_Constants.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25853copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_Data.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25854copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_DCD.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25855copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_HomoCoord.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25856copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_local.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25857copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_local_open.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25858copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_local_rasmol.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25859copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_local_xmgr.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25860copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_tests.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25861copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\md_Trans.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25862copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\MDToolsMarch97\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd\MDToolsMarch97
25863copying build\lib.win-amd64-cpython-311\chimerax\md_crds\dcd\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds\dcd
25864copying build\lib.win-amd64-cpython-311\chimerax\md_crds\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25865copying build\lib.win-amd64-cpython-311\chimerax\md_crds\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25866copying build\lib.win-amd64-cpython-311\chimerax\md_crds\providers.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25867copying build\lib.win-amd64-cpython-311\chimerax\md_crds\read_coords.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25868copying build\lib.win-amd64-cpython-311\chimerax\md_crds\read_gro.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25869copying build\lib.win-amd64-cpython-311\chimerax\md_crds\read_lammps.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25870copying build\lib.win-amd64-cpython-311\chimerax\md_crds\read_psf.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25871copying build\lib.win-amd64-cpython-311\chimerax\md_crds\util.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25872copying build\lib.win-amd64-cpython-311\chimerax\md_crds\write_coords.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25873copying build\lib.win-amd64-cpython-311\chimerax\md_crds\_gromacs.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25874copying build\lib.win-amd64-cpython-311\chimerax\md_crds\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\md_crds
25875running install_egg_info
25876running egg_info
25877creating ChimeraX_MDcrds.egg-info
25878writing ChimeraX_MDcrds.egg-info\PKG-INFO
25879writing dependency_links to ChimeraX_MDcrds.egg-info\dependency_links.txt
25880writing requirements to ChimeraX_MDcrds.egg-info\requires.txt
25881writing top-level names to ChimeraX_MDcrds.egg-info\top_level.txt
25882writing manifest file 'ChimeraX_MDcrds.egg-info\SOURCES.txt'
25883reading manifest file 'ChimeraX_MDcrds.egg-info\SOURCES.txt'
25884writing manifest file 'ChimeraX_MDcrds.egg-info\SOURCES.txt'
25885Copying ChimeraX_MDcrds.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MDcrds-2.17.1-py3.11.egg-info
25886running install_scripts
25887C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
25888 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
25889creating build\bdist.win-amd64\wheel\chimerax_mdcrds-2.17.1.dist-info\WHEEL
25890creating 'dist\chimerax_mdcrds-2.17.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
25891adding 'chimerax/md_crds/__init__.py'
25892adding 'chimerax/md_crds/_gromacs.cp311-win_amd64.pyd'
25893adding 'chimerax/md_crds/gui.py'
25894adding 'chimerax/md_crds/manager.py'
25895adding 'chimerax/md_crds/providers.py'
25896adding 'chimerax/md_crds/read_coords.py'
25897adding 'chimerax/md_crds/read_gro.py'
25898adding 'chimerax/md_crds/read_lammps.py'
25899adding 'chimerax/md_crds/read_psf.py'
25900adding 'chimerax/md_crds/util.py'
25901adding 'chimerax/md_crds/write_coords.py'
25902adding 'chimerax/md_crds/dcd/__init__.py'
25903adding 'chimerax/md_crds/dcd/MDToolsMarch97/__init__.py'
25904adding 'chimerax/md_crds/dcd/MDToolsMarch97/md.py'
25905adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_AtomGroup.py'
25906adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_Constants.py'
25907adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_DCD.py'
25908adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_Data.py'
25909adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_HomoCoord.py'
25910adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_Trans.py'
25911adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_local.py'
25912adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_local_open.py'
25913adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_local_rasmol.py'
25914adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_local_xmgr.py'
25915adding 'chimerax/md_crds/dcd/MDToolsMarch97/md_tests.py'
25916adding 'chimerax/md_crds/dcd/MDToolsMarch97/data/alanin.dcd'
25917adding 'chimerax/md_crds/dcd/MDToolsMarch97/data/alanin.pdb'
25918adding 'chimerax/md_crds/dcd/MDToolsMarch97/data/alanin.psf'
25919adding 'chimerax_mdcrds-2.17.1.dist-info/METADATA'
25920adding 'chimerax_mdcrds-2.17.1.dist-info/WHEEL'
25921adding 'chimerax_mdcrds-2.17.1.dist-info/top_level.txt'
25922adding 'chimerax_mdcrds-2.17.1.dist-info/RECORD'
25923removing build\bdist.win-amd64\wheel
25924Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\md_crds\dist\chimerax_mdcrds-2.17.1-cp311-cp311-win_amd64.whl
25925INFO:
25926
25927make sync
25928make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
25929cp -av dist/*.whl ../../../build/sync
25930'dist/chimerax_mdcrds-2.17.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_mdcrds-2.17.1-cp311-cp311-win_amd64.whl'
25931make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
25932make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/md_crds'
25933make -C medical_toolbar build
25934make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
25935if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
25936 echo "missing ChimeraX application's python"; exit 1; \
25937else \
25938 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
25939fi
25940INFO:
25941Executing: devel build . exit true
25942C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
25943!!
25944
25945 ********************************************************************************
25946 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
25947
25948 By 2026-Feb-18, you need to update your project and remove deprecated calls
25949 or your builds will no longer be supported.
25950
25951 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
25952 ********************************************************************************
25953
25954!!
25955 corresp(dist, value, root_dir)
25956running build
25957running build_py
25958creating build\lib\chimerax\medical_toolbar
25959copying src\actions.py -> build\lib\chimerax\medical_toolbar
25960copying src\__init__.py -> build\lib\chimerax\medical_toolbar
25961creating build\lib\chimerax\medical_toolbar\icons
25962copying src\icons\opendicom.png -> build\lib\chimerax\medical_toolbar\icons
25963running bdist_wheel
25964installing to build\bdist.win-amd64\wheel
25965running install
25966running install_lib
25967creating build\bdist.win-amd64\wheel
25968creating build\bdist.win-amd64\wheel\chimerax
25969creating build\bdist.win-amd64\wheel\chimerax\medical_toolbar
25970copying build\lib\chimerax\medical_toolbar\actions.py -> build\bdist.win-amd64\wheel\.\chimerax\medical_toolbar
25971creating build\bdist.win-amd64\wheel\chimerax\medical_toolbar\icons
25972copying build\lib\chimerax\medical_toolbar\icons\opendicom.png -> build\bdist.win-amd64\wheel\.\chimerax\medical_toolbar\icons
25973copying build\lib\chimerax\medical_toolbar\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\medical_toolbar
25974running install_egg_info
25975running egg_info
25976creating ChimeraX_MedicalToolbar.egg-info
25977writing ChimeraX_MedicalToolbar.egg-info\PKG-INFO
25978writing dependency_links to ChimeraX_MedicalToolbar.egg-info\dependency_links.txt
25979writing requirements to ChimeraX_MedicalToolbar.egg-info\requires.txt
25980writing top-level names to ChimeraX_MedicalToolbar.egg-info\top_level.txt
25981writing manifest file 'ChimeraX_MedicalToolbar.egg-info\SOURCES.txt'
25982reading manifest file 'ChimeraX_MedicalToolbar.egg-info\SOURCES.txt'
25983writing manifest file 'ChimeraX_MedicalToolbar.egg-info\SOURCES.txt'
25984Copying ChimeraX_MedicalToolbar.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MedicalToolbar-1.1-py3.11.egg-info
25985running install_scripts
25986creating build\bdist.win-amd64\wheel\chimerax_medicaltoolbar-1.1.dist-info\WHEEL
25987creating 'dist\chimerax_medicaltoolbar-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
25988adding 'chimerax/medical_toolbar/__init__.py'
25989adding 'chimerax/medical_toolbar/actions.py'
25990adding 'chimerax/medical_toolbar/icons/opendicom.png'
25991adding 'chimerax_medicaltoolbar-1.1.dist-info/METADATA'
25992adding 'chimerax_medicaltoolbar-1.1.dist-info/WHEEL'
25993adding 'chimerax_medicaltoolbar-1.1.dist-info/top_level.txt'
25994adding 'chimerax_medicaltoolbar-1.1.dist-info/RECORD'
25995removing build\bdist.win-amd64\wheel
25996Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\medical_toolbar\dist\chimerax_medicaltoolbar-1.1-py3-none-any.whl
25997INFO:
25998
25999make sync
26000make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
26001cp -av dist/*.whl ../../../build/sync
26002'dist/chimerax_medicaltoolbar-1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_medicaltoolbar-1.1-py3-none-any.whl'
26003make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
26004make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/medical_toolbar'
26005make -C meeting build
26006make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
26007if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
26008 echo "missing ChimeraX application's python"; exit 1; \
26009else \
26010 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
26011fi
26012INFO:
26013Executing: devel build . exit true
26014C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
26015!!
26016
26017 ********************************************************************************
26018 Please consider removing the following classifiers in favor of a SPDX license expression:
26019
26020 License :: Free for non-commercial use
26021
26022 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
26023 ********************************************************************************
26024
26025!!
26026 self._finalize_license_expression()
26027running build
26028running build_py
26029creating build\lib\chimerax\meeting
26030copying src\gui.py -> build\lib\chimerax\meeting
26031copying src\meeting.py -> build\lib\chimerax\meeting
26032copying src\nameserver.py -> build\lib\chimerax\meeting
26033copying src\sshtunnel.py -> build\lib\chimerax\meeting
26034copying src\__init__.py -> build\lib\chimerax\meeting
26035copying src\face.png -> build\lib\chimerax\meeting
26036running bdist_wheel
26037installing to build\bdist.win-amd64\wheel
26038running install
26039running install_lib
26040creating build\bdist.win-amd64\wheel
26041creating build\bdist.win-amd64\wheel\chimerax
26042creating build\bdist.win-amd64\wheel\chimerax\meeting
26043copying build\lib\chimerax\meeting\face.png -> build\bdist.win-amd64\wheel\.\chimerax\meeting
26044copying build\lib\chimerax\meeting\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\meeting
26045copying build\lib\chimerax\meeting\meeting.py -> build\bdist.win-amd64\wheel\.\chimerax\meeting
26046copying build\lib\chimerax\meeting\nameserver.py -> build\bdist.win-amd64\wheel\.\chimerax\meeting
26047copying build\lib\chimerax\meeting\sshtunnel.py -> build\bdist.win-amd64\wheel\.\chimerax\meeting
26048copying build\lib\chimerax\meeting\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\meeting
26049running install_egg_info
26050running egg_info
26051creating ChimeraX_Meeting.egg-info
26052writing ChimeraX_Meeting.egg-info\PKG-INFO
26053writing dependency_links to ChimeraX_Meeting.egg-info\dependency_links.txt
26054writing requirements to ChimeraX_Meeting.egg-info\requires.txt
26055writing top-level names to ChimeraX_Meeting.egg-info\top_level.txt
26056writing manifest file 'ChimeraX_Meeting.egg-info\SOURCES.txt'
26057reading manifest file 'ChimeraX_Meeting.egg-info\SOURCES.txt'
26058writing manifest file 'ChimeraX_Meeting.egg-info\SOURCES.txt'
26059Copying ChimeraX_Meeting.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Meeting-1.0.1-py3.11.egg-info
26060running install_scripts
26061creating build\bdist.win-amd64\wheel\chimerax_meeting-1.0.1.dist-info\WHEEL
26062creating 'dist\chimerax_meeting-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
26063adding 'chimerax/meeting/__init__.py'
26064adding 'chimerax/meeting/face.png'
26065adding 'chimerax/meeting/gui.py'
26066adding 'chimerax/meeting/meeting.py'
26067adding 'chimerax/meeting/nameserver.py'
26068adding 'chimerax/meeting/sshtunnel.py'
26069adding 'chimerax_meeting-1.0.1.dist-info/METADATA'
26070adding 'chimerax_meeting-1.0.1.dist-info/WHEEL'
26071adding 'chimerax_meeting-1.0.1.dist-info/top_level.txt'
26072adding 'chimerax_meeting-1.0.1.dist-info/RECORD'
26073removing build\bdist.win-amd64\wheel
26074Distribution is in .\dist\ChimeraX_Meeting-1.0.1-py3-none-any.whl
26075INFO:
26076
26077make sync
26078make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
26079cp -av dist/*.whl ../../../build/sync
26080'dist/chimerax_meeting-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_meeting-1.0.1-py3-none-any.whl'
26081make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
26082make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/meeting'
26083make -C minimize build
26084make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
26085if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
26086 echo "missing ChimeraX application's python"; exit 1; \
26087else \
26088 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
26089fi
26090INFO:
26091Executing: devel build . exit true
26092C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
26093!!
26094
26095 ********************************************************************************
26096 Please consider removing the following classifiers in favor of a SPDX license expression:
26097
26098 License :: Free for non-commercial use
26099
26100 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
26101 ********************************************************************************
26102
26103!!
26104 self._finalize_license_expression()
26105running build
26106running build_py
26107creating build\lib\chimerax\minimize
26108copying src\cmd.py -> build\lib\chimerax\minimize
26109copying src\__init__.py -> build\lib\chimerax\minimize
26110copying src\gaff-2.2.20.xml -> build\lib\chimerax\minimize
26111running bdist_wheel
26112installing to build\bdist.win-amd64\wheel
26113running install
26114running install_lib
26115creating build\bdist.win-amd64\wheel
26116creating build\bdist.win-amd64\wheel\chimerax
26117creating build\bdist.win-amd64\wheel\chimerax\minimize
26118copying build\lib\chimerax\minimize\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\minimize
26119copying build\lib\chimerax\minimize\gaff-2.2.20.xml -> build\bdist.win-amd64\wheel\.\chimerax\minimize
26120copying build\lib\chimerax\minimize\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\minimize
26121running install_egg_info
26122running egg_info
26123creating ChimeraX_Minimize.egg-info
26124writing ChimeraX_Minimize.egg-info\PKG-INFO
26125writing dependency_links to ChimeraX_Minimize.egg-info\dependency_links.txt
26126writing requirements to ChimeraX_Minimize.egg-info\requires.txt
26127writing top-level names to ChimeraX_Minimize.egg-info\top_level.txt
26128writing manifest file 'ChimeraX_Minimize.egg-info\SOURCES.txt'
26129reading manifest file 'ChimeraX_Minimize.egg-info\SOURCES.txt'
26130writing manifest file 'ChimeraX_Minimize.egg-info\SOURCES.txt'
26131Copying ChimeraX_Minimize.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Minimize-1.2-py3.11.egg-info
26132running install_scripts
26133creating build\bdist.win-amd64\wheel\chimerax_minimize-1.2.dist-info\WHEEL
26134creating 'dist\chimerax_minimize-1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
26135adding 'chimerax/minimize/__init__.py'
26136adding 'chimerax/minimize/cmd.py'
26137adding 'chimerax/minimize/gaff-2.2.20.xml'
26138adding 'chimerax_minimize-1.2.dist-info/METADATA'
26139adding 'chimerax_minimize-1.2.dist-info/WHEEL'
26140adding 'chimerax_minimize-1.2.dist-info/top_level.txt'
26141adding 'chimerax_minimize-1.2.dist-info/RECORD'
26142removing build\bdist.win-amd64\wheel
26143Distribution is in .\dist\ChimeraX_Minimize-1.2-py3-none-any.whl
26144INFO:
26145
26146make sync
26147make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
26148cp -av dist/*.whl ../../../build/sync
26149'dist/chimerax_minimize-1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_minimize-1.2-py3-none-any.whl'
26150make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
26151make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/minimize'
26152make -C mlp build
26153make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
26154if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
26155 echo "missing ChimeraX application's python"; exit 1; \
26156else \
26157 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
26158fi
26159INFO:
26160Executing: devel build . exit true
26161C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
26162!!
26163
26164 ********************************************************************************
26165 Please consider removing the following classifiers in favor of a SPDX license expression:
26166
26167 License :: Free for non-commercial use
26168
26169 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
26170 ********************************************************************************
26171
26172!!
26173 self._finalize_license_expression()
26174running build
26175running build_py
26176creating build\lib.win-amd64-cpython-311\chimerax\mlp
26177copying src\mlp.py -> build\lib.win-amd64-cpython-311\chimerax\mlp
26178copying src\pyMLP.py -> build\lib.win-amd64-cpython-311\chimerax\mlp
26179copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\mlp
26180running build_ext
26181building 'chimerax.mlp._mlp' extension
26182creating build\temp.win-amd64-cpython-311\Release\_mlp
26183"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_mlp/mlp.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_mlp\mlp.obj
26184mlp.cpp
26185_mlp/mlp.cpp(51): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
26186_mlp/mlp.cpp(52): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
26187_mlp/mlp.cpp(52): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
26188_mlp/mlp.cpp(54): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
26189_mlp/mlp.cpp(54): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
26190_mlp/mlp.cpp(54): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
26191_mlp/mlp.cpp(55): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
26192_mlp/mlp.cpp(55): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
26193_mlp/mlp.cpp(55): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
26194_mlp/mlp.cpp(57): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
26195_mlp/mlp.cpp(92): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
26196_mlp/mlp.cpp(94): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
26197_mlp/mlp.cpp(96): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
26198"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__mlp build\temp.win-amd64-cpython-311\Release\_mlp\mlp.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\mlp\_mlp.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_mlp\_mlp.cp311-win_amd64.lib
26199 Creating library build\temp.win-amd64-cpython-311\Release\_mlp\_mlp.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_mlp\_mlp.cp311-win_amd64.exp
26200Generating code
26201Finished generating code
26202running bdist_wheel
26203installing to build\bdist.win-amd64\wheel
26204running install
26205running install_lib
26206running build_ext
26207creating build\bdist.win-amd64\wheel
26208creating build\bdist.win-amd64\wheel\chimerax
26209creating build\bdist.win-amd64\wheel\chimerax\mlp
26210copying build\lib.win-amd64-cpython-311\chimerax\mlp\mlp.py -> build\bdist.win-amd64\wheel\.\chimerax\mlp
26211copying build\lib.win-amd64-cpython-311\chimerax\mlp\pyMLP.py -> build\bdist.win-amd64\wheel\.\chimerax\mlp
26212copying build\lib.win-amd64-cpython-311\chimerax\mlp\_mlp.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\mlp
26213copying build\lib.win-amd64-cpython-311\chimerax\mlp\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mlp
26214running install_egg_info
26215running egg_info
26216creating ChimeraX_MLP.egg-info
26217writing ChimeraX_MLP.egg-info\PKG-INFO
26218writing dependency_links to ChimeraX_MLP.egg-info\dependency_links.txt
26219writing requirements to ChimeraX_MLP.egg-info\requires.txt
26220writing top-level names to ChimeraX_MLP.egg-info\top_level.txt
26221writing manifest file 'ChimeraX_MLP.egg-info\SOURCES.txt'
26222reading manifest file 'ChimeraX_MLP.egg-info\SOURCES.txt'
26223writing manifest file 'ChimeraX_MLP.egg-info\SOURCES.txt'
26224Copying ChimeraX_MLP.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MLP-1.1.1-py3.11.egg-info
26225running install_scripts
26226C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
26227 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
26228creating build\bdist.win-amd64\wheel\chimerax_mlp-1.1.1.dist-info\WHEEL
26229creating 'dist\chimerax_mlp-1.1.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
26230adding 'chimerax/mlp/__init__.py'
26231adding 'chimerax/mlp/_mlp.cp311-win_amd64.pyd'
26232adding 'chimerax/mlp/mlp.py'
26233adding 'chimerax/mlp/pyMLP.py'
26234adding 'chimerax_mlp-1.1.1.dist-info/METADATA'
26235adding 'chimerax_mlp-1.1.1.dist-info/WHEEL'
26236adding 'chimerax_mlp-1.1.1.dist-info/top_level.txt'
26237adding 'chimerax_mlp-1.1.1.dist-info/RECORD'
26238removing build\bdist.win-amd64\wheel
26239Distribution is in .\dist\ChimeraX_MLP-1.1.1-cp311-cp311-win_amd64.whl
26240INFO:
26241
26242make sync
26243make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
26244cp -av dist/*.whl ../../../build/sync
26245'dist/chimerax_mlp-1.1.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_mlp-1.1.1-cp311-cp311-win_amd64.whl'
26246make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
26247make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mlp'
26248make -C model_series build
26249make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
26250if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
26251 echo "missing ChimeraX application's python"; exit 1; \
26252else \
26253 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
26254fi
26255INFO:
26256Executing: devel build . exit true
26257C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
26258!!
26259
26260 ********************************************************************************
26261 Please consider removing the following classifiers in favor of a SPDX license expression:
26262
26263 License :: Free for non-commercial use
26264
26265 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
26266 ********************************************************************************
26267
26268!!
26269 self._finalize_license_expression()
26270running build
26271running build_py
26272creating build\lib\chimerax\model_series
26273copying src\mseries.py -> build\lib\chimerax\model_series
26274copying src\__init__.py -> build\lib\chimerax\model_series
26275running bdist_wheel
26276installing to build\bdist.win-amd64\wheel
26277running install
26278running install_lib
26279creating build\bdist.win-amd64\wheel
26280creating build\bdist.win-amd64\wheel\chimerax
26281creating build\bdist.win-amd64\wheel\chimerax\model_series
26282copying build\lib\chimerax\model_series\mseries.py -> build\bdist.win-amd64\wheel\.\chimerax\model_series
26283copying build\lib\chimerax\model_series\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\model_series
26284running install_egg_info
26285running egg_info
26286creating ChimeraX_ModelSeries.egg-info
26287writing ChimeraX_ModelSeries.egg-info\PKG-INFO
26288writing dependency_links to ChimeraX_ModelSeries.egg-info\dependency_links.txt
26289writing requirements to ChimeraX_ModelSeries.egg-info\requires.txt
26290writing top-level names to ChimeraX_ModelSeries.egg-info\top_level.txt
26291writing manifest file 'ChimeraX_ModelSeries.egg-info\SOURCES.txt'
26292reading manifest file 'ChimeraX_ModelSeries.egg-info\SOURCES.txt'
26293writing manifest file 'ChimeraX_ModelSeries.egg-info\SOURCES.txt'
26294Copying ChimeraX_ModelSeries.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ModelSeries-1.0.1-py3.11.egg-info
26295running install_scripts
26296creating build\bdist.win-amd64\wheel\chimerax_modelseries-1.0.1.dist-info\WHEEL
26297creating 'dist\chimerax_modelseries-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
26298adding 'chimerax/model_series/__init__.py'
26299adding 'chimerax/model_series/mseries.py'
26300adding 'chimerax_modelseries-1.0.1.dist-info/METADATA'
26301adding 'chimerax_modelseries-1.0.1.dist-info/WHEEL'
26302adding 'chimerax_modelseries-1.0.1.dist-info/top_level.txt'
26303adding 'chimerax_modelseries-1.0.1.dist-info/RECORD'
26304removing build\bdist.win-amd64\wheel
26305Distribution is in .\dist\ChimeraX_ModelSeries-1.0.1-py3-none-any.whl
26306INFO:
26307
26308make sync
26309make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
26310cp -av dist/*.whl ../../../build/sync
26311'dist/chimerax_modelseries-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_modelseries-1.0.1-py3-none-any.whl'
26312make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
26313make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_series'
26314make -C mmcif build
26315make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
26316make -C mmcif_cpp source
26317make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp'
26318mkdir lib
26319mkdir include
26320cd readcif_cpp; make install
26321make[7]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp'
26322cl -nologo -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 -Ox -W2 -I'C:/cygwin64/home/goddard/ucsf/chimerax/build/include' -c readcif.cpp
26323readcif.cpp
26324lib -OUT:libreadcif.lib readcif.obj
26325Microsoft (R) Library Manager Version 14.29.30152.0
26326Copyright (C) Microsoft Corporation. All rights reserved.
26327
26328/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv readcif.h ../include
26329sending incremental file list
26330readcif.h
26331
26332sent 14,241 bytes received 35 bytes 28,552.00 bytes/sec
26333total size is 14,147 speedup is 0.99
26334/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv libreadcif.lib ../lib
26335sending incremental file list
26336libreadcif.lib
26337
26338sent 721,567 bytes received 35 bytes 1,443,204.00 bytes/sec
26339total size is 721,296 speedup is 1.00
26340#cp libreadcif.dll /home/goddard/ucsf/chimerax/build/bin
26341#if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app/include" ]; then \
26342# /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv readcif.h /home/goddard/ucsf/chimerax/ChimeraX.app/include; \
26343#fi
26344#if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app/lib" ]; then \
26345# /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv libreadcif.lib /home/goddard/ucsf/chimerax/ChimeraX.app/lib; \
26346#fi
26347#if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin" ]; then /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv libreadcif.dll /home/goddard/ucsf/chimerax/ChimeraX.app/bin; fi
26348make[7]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp/readcif_cpp'
26349make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif/mmcif_cpp'
26350if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
26351 echo "missing ChimeraX application's python"; exit 1; \
26352else \
26353 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
26354fi
26355INFO:
26356Executing: devel build . exit true
26357Compiling src/mmcif.pyx because it changed.
26358Compiling src/mmcif_write.pyx because it changed.
26359[1/2] Cythonizing src/mmcif.pyx
26360[2/2] Cythonizing src/mmcif_write.pyx
26361C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
26362!!
26363
26364 ********************************************************************************
26365 Please consider removing the following classifiers in favor of a SPDX license expression:
26366
26367 License :: Free for non-commercial use
26368
26369 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
26370 ********************************************************************************
26371
26372!!
26373 self._finalize_license_expression()
26374running build
26375running build_py
26376creating build\lib.win-amd64-cpython-311\chimerax\mmcif
26377copying src\build_ui.py -> build\lib.win-amd64-cpython-311\chimerax\mmcif
26378copying src\corecif.py -> build\lib.win-amd64-cpython-311\chimerax\mmcif
26379copying src\gui.py -> build\lib.win-amd64-cpython-311\chimerax\mmcif
26380copying src\uniprot_id.py -> build\lib.win-amd64-cpython-311\chimerax\mmcif
26381copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\mmcif
26382copying src\stdresidues.cif -> build\lib.win-amd64-cpython-311\chimerax\mmcif
26383running build_ext
26384building 'chimerax.mmcif._mmcif' extension
26385building 'chimerax.mmcif.mmcif' extension
26386building 'chimerax.mmcif.mmcif_write' extension
26387creating build\temp.win-amd64-cpython-311\Release\src
26388"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpsrc/mmcif.cpp /Fobuild\temp.win-amd64-cpython-311\Release\src\mmcif.obj
26389mmcif.cpp
26390creating build\temp.win-amd64-cpython-311\Release\mmcif_cpp
26391"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -Immcif_cpp/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpmmcif_cpp/_mmcif.cpp /Fobuild\temp.win-amd64-cpython-311\Release\mmcif_cpp\_mmcif.obj
26392_mmcif.cpp
26393"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpsrc/mmcif_write.cpp /Fobuild\temp.win-amd64-cpython-311\Release\src\mmcif_write.obj
26394mmcif_write.cpp
26395src/mmcif.cpp(29152): warning C4244: '=': conversion from 'Py_ssize_t' to 'int', possible loss of data
26396C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
26397c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'s
26398rc/mmcif.cpp(31886): warning C4244: '=': conversion from 'Py_ssize_t' to 'int', possible loss of dataC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
26399
26400C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
26401C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
26402C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
26403C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
26404C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
26405C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
26406C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
26407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
26408C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
26409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26410C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
26411c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26412C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
26413C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26414C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
26415C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26416C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
26417C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26418c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26419C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26420c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26424c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26425C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26426c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26427C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26428c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26429C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26430c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26431C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26432c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26433C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26434c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26435C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26436c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26438c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26439C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26440c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26441C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26442c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26443C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26444c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26445C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26446c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26447C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26448c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26450c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26451C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26452c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26453C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26454c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26455C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26456c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26457C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26458c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26459C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26460c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26461C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26462c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26463C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26464c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26465C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26466c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26467C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26468c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26469C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26470c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26471C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26472c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26474c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26475C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26476c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26477C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26478c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26479C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26480c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26481C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26482c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26483C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26484c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26485C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26486c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26487C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26488c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26489C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26490c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26491C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26492c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26493C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26494c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26495C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26496c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26497C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26498c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26499C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26500c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26501C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
26502c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26503C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
26504C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
26505C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
26506C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
26507C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
26508C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
26509C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
26510C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
26511C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26512C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
26513C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
26514src/mmcif.cpp(42611): warning C4551: function call missing argument list
26515src/mmcif.cpp(42612): warning C4551: function call missing argument list
26516src/mmcif.cpp(42613): warning C4551: function call missing argument list
26517src/mmcif.cpp(43300): warning C4551: function call missing argument list
26518src/mmcif.cpp(43307): warning C4551: function call missing argument list
26519src/mmcif.cpp(44891): warning C4551: function call missing argument list
26520C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
26521c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26522C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
26523C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26524C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
26525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26526C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
26527C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26528C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
26529C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26530C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
26531C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26532C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
26533src/mmcif.cpp(46205): warning C4551: function call missing argument list
26534C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'src/mmcif.cpp(46223): warning C4551: function call missing argument list
26535
26536C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
26537src/mmcif.cpp(46224): warning C4551: function call missing argument list
26538src/mmcif.cpp(46225): warning C4551: function call missing argument list
26539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26540C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
26541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26542c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26543C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26544C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26545c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26546C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26547c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
26550C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
26552C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26553C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26554C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
26555C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26556C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
26557C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26558C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
26559C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26560C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
26561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
26562c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26563C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
26564C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
26565C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
26566"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit_mmcif build\temp.win-amd64-cpython-311\Release\src\mmcif.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\mmcif\mmcif.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\src\mmcif.cp311-win_amd64.lib
26567src/mmcif_write.cpp(32493): warning C4551: function call missing argument list
26568src/mmcif_write.cpp(32500): warning C4551: function call missing argument list
26569src/mmcif_write.cpp(32844): warning C4551: function call missing argument list
26570src/mmcif_write.cpp(32845): warning C4551: function call missing argument list
26571src/mmcif_write.cpp(32846): warning C4551: function call missing argument list
26572src/mmcif_write.cpp(32916): warning C4551: function call missing argument list
26573src/mmcif_write.cpp(32917): warning C4551: function call missing argument list
26574src/mmcif_write.cpp(32918): warning C4551: function call missing argument list
26575C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
26576c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26577C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
26578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
26579C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
26580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
26581C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
26582C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
26583c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26584C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
26585C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26586C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
26587C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26588C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
26589C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' Creating library build\temp.win-amd64-cpython-311\Release\src\mmcif.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\src\mmcif.cp311-win_amd64.exp
26590s
26591rc/mmcif_write.cpp(36303): warning C4551: function call missing argument listC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
26592
26593C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
26595C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
26597Generating code
26598C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26599C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
26600src/mmcif_write.cpp(37409): warning C4551: function call missing argument list
26601C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26602C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
26603C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26604c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26605C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26606C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
26607C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
26608c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26609C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
26610C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
26611C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
26612C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
26613C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
26614C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
26615C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
26616C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26617C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26618C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
26619c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26620C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
26621"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit_mmcif_write build\temp.win-amd64-cpython-311\Release\src\mmcif_write.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\mmcif\mmcif_write.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\src\mmcif_write.cp311-win_amd64.lib
26622C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26623C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
26624C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26625C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
26626C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26627C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
26628C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26629C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
26630C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26631c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26632C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26633C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
26634C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26635C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
26636C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
26637C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
26638C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26639C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
26640c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26641C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
26642C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
26643C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
26644C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
26645C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
26646c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26647C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
26648C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
26649C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
26650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
26651c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26652C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
26653C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
26654C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
26655C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
26656C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
26657C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
26658c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26659C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
26660C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
26661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
26662c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26663C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
26664C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
26665c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error' Creating library build\temp.win-amd64-cpython-311\Release\src\mmcif_write.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\src\mmcif_write.cp311-win_amd64.exp
26666
26667C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
26668C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
26669c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26670C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
26671C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26672C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
26673C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26674c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26675Generating code
26676C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26677C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
26678C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26679c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26680C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26681C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
26682C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
26683c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26684C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
26685C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
26686C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
26687C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
26688C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
26689C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
26690C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
26691C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
26692C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
26693"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -Immcif_cpp/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpmmcif_cpp/corecif.cpp /Fobuild\temp.win-amd64-cpython-311\Release\mmcif_cpp\corecif.obj
26694corecif.cpp
26695C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
26696c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26697C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
26698C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
26699c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26700C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
26701C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
26702C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
26703C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
26704C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
26705C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
26706C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
26707C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
26708C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26709C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
26710C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
26711C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
26712C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
26713C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
26714C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
26715C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
26716c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26717C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
26718C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26719C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
26720C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26721C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
26722C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26723C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
26724C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26725C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
26726C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26727C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
26728C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26729C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
26730C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26731C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
26732C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
26733c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26734C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26735C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26736c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26737C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26738c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26739C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26740C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
26741C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
26742C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
26743C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26744C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
26745C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
26746C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
26747C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
26748C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
26749C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26750C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
26751c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26752C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
26753C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26754C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
26755C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26756C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
26757C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26758c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26759C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26760c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26761C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26762c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26763C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26764c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26765C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26766c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26767C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26768c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26769C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26770c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26771C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26772c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26773C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26774c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26775C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26776c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26777C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26778c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26779C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26780c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26781C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26782c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26783C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26784c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26785C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26786c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26787C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26788c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26789C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26790c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26791C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26792c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26793C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26794c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26795C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26796c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26797C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26798c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26799C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26800c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26801C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26802c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26803C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26804c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26805C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26806c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26807C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26808c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26809C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26810c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26811C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26812c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26813C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26814c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26815C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26816c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26817C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26818c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26819C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26820c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26821C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26822c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26823C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26824c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26825C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26826c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26827C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26828c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26829C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26830c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26831C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26832c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26833C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26834c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26835C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26836c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26837C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26838c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26839C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
26840c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26841C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26842C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
26843C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26844C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
26845C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26846C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
26847C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
26848C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
26849C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
26850c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26851C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
26852C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
26853C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
26854C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
26855c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26856C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
26857C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
26858C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
26859C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
26860C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
26861C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
26862c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26863C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
26864C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26865C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
26866C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26867C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
26868C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26869C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
26870C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26871C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>'
26872C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26873C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
26874C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26875C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
26876C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26877C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
26878C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26879c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26880C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
26881C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>'
26882C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
26883c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26884C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
26885C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
26886C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
26887C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
26888C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
26889C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
26890C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
26891C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26892C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26893C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
26894c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26895C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
26896C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26897C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
26898C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26899c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26900C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26901c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26902C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26903c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26904C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26905C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26906C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<std::string,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26907C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmcif\mmcif_cpp\corecif.h(34): note: see declaration of 'std::vector<std::string,std::allocator<std::string>>'
26908C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26909C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26910C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26911C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26912C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26913C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26914C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26915C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26916C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<std::string,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26917C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmcif\mmcif_cpp\corecif.h(34): note: see declaration of 'std::vector<std::string,std::allocator<std::string>>'
26918C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26919C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26920C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26921C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26922C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26923C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26924C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26925C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26926C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26927C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26928C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26929C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
26930C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
26931C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
26932C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26933C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
26934c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26935C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
26936C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26937C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
26938C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26939C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
26940C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26941C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
26942C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26943C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
26944C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26945c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26946C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26947C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
26948C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
26949C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
26950C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
26951C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
26952C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
26953C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
26954c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26955C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
26956C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
26957C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
26958C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
26959C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
26960c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26961C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
26962C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
26963c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26964C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
26965C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
26966c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26967C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
26968C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
26969C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
26970C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
26971C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
26972c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26973C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
26974c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26975C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
26976C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26977C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>'
26978C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26979c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26980C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26981C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
26982C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26983c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26984C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
26985C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
26986C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
26987c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26988C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
26989C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
26990C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
26991C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
26992c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
26993C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
26994C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
26995C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
26996C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
26997C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
26998C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
26999c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27000C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27001C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
27002C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
27003c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27004C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
27005C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
27006c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
27007C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
27008C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
27009c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27010C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
27011C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27012C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
27013C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27014C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
27015C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27016C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
27017C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27018C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
27019mmcif_cpp/corecif.cpp(393): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27020mmcif_cpp/corecif.cpp(447): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27021mmcif_cpp/corecif.cpp(447): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27022mmcif_cpp/corecif.cpp(447): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27023mmcif_cpp/corecif.cpp(447): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27024mmcif_cpp/corecif.cpp(447): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27025mmcif_cpp/corecif.cpp(447): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27026Finished generating code
27027"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -Immcif_cpp/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpmmcif_cpp/mmcif.cpp /Fobuild\temp.win-amd64-cpython-311\Release\mmcif_cpp\mmcif.obj
27028mmcif.cpp
27029C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmcif\mmcif_cpp\_mmcif.h(8): warning C4005: 'PY_SSIZE_T_CLEAN': macro redefinition
27030mmcif_cpp/mmcif.cpp(26): note: see previous definition of 'PY_SSIZE_T_CLEAN'
27031C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
27032c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27033C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
27034C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
27035C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
27036C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
27037C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
27038C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
27039C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
27040C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
27041C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
27042C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
27043C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27044C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
27045c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27046C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
27047C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27048C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
27049C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27050C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
27051C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27052c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27053C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27054c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27055C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27056c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27057C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27058c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27059C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27060c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27061C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27062c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27063C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27064c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27065C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27066c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27067C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27068c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27069C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27070c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27071C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27072c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27073C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27074c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27075C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27076c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27077C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27078c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27079C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27080c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27081C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27082c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27083C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27084c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27085C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27086c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27087C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27088c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27089C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27090c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27091C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27092c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27093C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27094c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27095C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27096c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27097C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27098c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27099C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27100c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27101C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27102c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27103C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27104c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27105C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27106c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27107C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27108c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27109C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27110c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27111C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27112c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27113C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27114c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27115C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27116c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27117C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27118c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27119C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27120c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27121C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27122c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27123C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27124c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27125C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27126c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27127C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27128c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27129C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27130c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27131C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27132c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27133C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27134c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27135C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
27136c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27137C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
27138C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
27139C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
27140C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
27141C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
27142C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
27143C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
27144C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
27145C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27146C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
27147C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
27148C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
27149c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27150C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
27151C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27152C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
27153C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27154C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
27155C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27156C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
27157C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27158C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
27159C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27160C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
27161C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27162C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
27163C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27164C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
27165C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27166c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27167C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27168C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27169c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27170C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27171c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27172C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27173C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
27174C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27175C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
27176C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27177C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27178C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
27179C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27180C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
27181C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27182C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
27183C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27184C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
27185C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
27186c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27187C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
27188C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
27189C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
27190C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
27191c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27192C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
27193C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
27194C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
27195C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
27196C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
27197C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
27198c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27199C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
27200C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27201C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
27202C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27203C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
27204C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27205C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
27206C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27207C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
27208C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27209C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
27210C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27211C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
27212C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27213C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
27214C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27215c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27216C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27217C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
27218C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
27219c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27220C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
27221C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
27222C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
27223C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
27224C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
27225C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
27226C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
27227C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27228C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27229C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
27230c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27231C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
27232C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27233C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
27234C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27235C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
27236C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27237C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
27238C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27239C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
27240C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27241c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27242C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27243C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
27244C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27245C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
27246C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27247C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
27248C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27249C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
27250c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27251C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
27252C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
27253C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
27254C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
27255C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
27256c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27257C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
27258C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27259C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
27260C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27261c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27262C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27263c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27264C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27265c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27266C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27267C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27268C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27269C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
27270C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27271C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27272C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27273C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27274C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27275C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27276C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27277C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27278C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27279C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
27280C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27281C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27282C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27283C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27284C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27285C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27286C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27287C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27288C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27289C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27290C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27291C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27292C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27293C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
27294C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27295C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
27296c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27297C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
27298C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
27299c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27300C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
27301C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
27302c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27303C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
27304C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
27305C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
27306C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
27307C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
27308c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27309C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
27310c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27311C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
27312C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27313C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
27314C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27315c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27316C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27317C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
27318C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27319c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27320C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27321C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
27322C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
27323c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27324C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
27325C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
27326C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
27327C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
27328c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27329C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
27330C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27331C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
27332C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27333C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
27334C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27335c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27336C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27337C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
27338C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
27339c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27340C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
27341C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
27342c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
27343C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
27344C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
27345c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27346C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
27347C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27348C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
27349C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27350C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
27351C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27352C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
27353C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27354C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
27355mmcif_cpp/mmcif.cpp(1460): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
27356mmcif_cpp/mmcif.cpp(1464): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
27357mmcif_cpp/mmcif.cpp(1634): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27358mmcif_cpp/mmcif.cpp(1636): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27359mmcif_cpp/mmcif.cpp(1270): warning C4101: 'e': unreferenced local variable
27360mmcif_cpp/mmcif.cpp(1696): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27361mmcif_cpp/mmcif.cpp(1696): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27362mmcif_cpp/mmcif.cpp(1696): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27363mmcif_cpp/mmcif.cpp(1696): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27364mmcif_cpp/mmcif.cpp(1696): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27365mmcif_cpp/mmcif.cpp(1696): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
27366mmcif_cpp/mmcif.cpp(1831): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27367"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\numpy\core\include -Immcif_cpp/include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tpmmcif_cpp/template.cpp /Fobuild\temp.win-amd64-cpython-311\Release\mmcif_cpp\template.obj
27368template.cpp
27369C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
27370c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27371C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
27372C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
27373C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
27374C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
27375C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
27376C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
27377C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
27378C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
27379C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
27380C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
27381C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27382C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
27383c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27384C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
27385C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27386C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
27387C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27388C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
27389C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27390c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27391C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27392c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27393C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27394c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27395C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27396c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27397C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27398c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27399C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27400c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27401C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27402c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27403C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27404c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27405C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27406c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27408c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27410c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27411C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27412c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27413C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27414c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27415C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27416c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27417C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27418c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27419C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27420c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27424c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27425C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27426c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27427C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27428c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27429C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27430c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27431C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27432c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27433C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27434c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27435C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27436c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27438c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27439C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27440c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27441C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27442c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27443C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27444c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27445C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27446c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27447C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27448c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27450c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27451C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27452c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27453C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27454c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27455C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27456c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27457C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27458c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27459C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27460c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27461C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27462c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27463C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27464c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27465C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27466c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27467C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27468c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27469C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27470c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27471C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
27472c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
27474c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27475C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
27476C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
27477C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
27478C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
27479C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
27480C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
27481C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
27482C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
27483C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27484C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
27485C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
27486C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
27487c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27488C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
27489C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27490C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
27491C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27492C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
27493C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27494C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
27495C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27496C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
27497C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
27499C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27500C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
27501C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27502C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
27503C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
27504c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27505C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27506C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27507c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27508C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27509c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27510C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27511C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
27512C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
27513C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
27514C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27515C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27516C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
27517C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27518C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
27519C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27520C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
27521C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
27522C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
27523C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
27524c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
27526C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
27527C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
27528C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
27529c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27530C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
27531C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
27532C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
27533C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
27534C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
27535C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
27536c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27537C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
27538C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
27540C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
27542C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27543C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
27544C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27545C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
27546C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27547C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
27548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
27550C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
27552C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27553c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27554C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
27555C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
27556C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
27557c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27558C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
27559C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
27560C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
27561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
27562C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
27563C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
27564C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
27565C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27566C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27567C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
27568c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27569C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
27570C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27571C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
27572C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27573C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
27574C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27575C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
27576C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27577C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
27578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27579c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27581C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
27582C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
27583C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
27584C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27585C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
27586C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27587C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
27588c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27589C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
27590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
27591C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
27592C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
27593C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
27594c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27595C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
27596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27597C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
27598C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27599c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27600C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27601c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27602C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27603c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27604C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27605C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27606C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27607C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
27608C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27609C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27610C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27611C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27612C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27613C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27614C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27615C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27616C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27617C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
27618C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27619C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27620C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27621C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27622C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27623C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27624C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27625C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27626C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27627C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27628C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27629C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
27630C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
27631C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
27632C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
27633C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
27634c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27635C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
27636c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27637C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
27638C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
27639C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
27640C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
27641c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27642C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
27643C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27644C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
27645C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27646C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
27647C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27648c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27649C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
27650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
27651C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
27652c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27653C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
27654C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
27655c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
27656C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
27657C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
27658c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27659C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
27660C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
27662C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27663c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27664C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27665C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
27666C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27667c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27668C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
27669C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
27670C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
27671c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
27672C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
27673C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27674C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
27675C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27676C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
27677C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27678C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
27679C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
27680C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
27681mmcif_cpp/template.cpp(390): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27682mmcif_cpp/template.cpp(394): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27683mmcif_cpp/template.cpp(398): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27684mmcif_cpp/template.cpp(402): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27685mmcif_cpp/template.cpp(406): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27686mmcif_cpp/template.cpp(410): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
27687"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:mmcif_cpp/lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib libpyinstance.lib libpdbconnect.lib libreadcif.lib liblogger.lib libarrays.lib /EXPORT:PyInit__mmcif build\temp.win-amd64-cpython-311\Release\mmcif_cpp\_mmcif.obj build\temp.win-amd64-cpython-311\Release\mmcif_cpp\corecif.obj build\temp.win-amd64-cpython-311\Release\mmcif_cpp\mmcif.obj build\temp.win-amd64-cpython-311\Release\mmcif_cpp\template.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\mmcif\_mmcif.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\mmcif_cpp\_mmcif.cp311-win_amd64.lib
27688 Creating library build\temp.win-amd64-cpython-311\Release\mmcif_cpp\_mmcif.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\mmcif_cpp\_mmcif.cp311-win_amd64.exp
27689Generating code
27690Finished generating code
27691Finished generating code
27692running bdist_wheel
27693installing to build\bdist.win-amd64\wheel
27694running install
27695running install_lib
27696running build_ext
27697creating build\bdist.win-amd64\wheel
27698creating build\bdist.win-amd64\wheel\chimerax
27699creating build\bdist.win-amd64\wheel\chimerax\mmcif
27700copying build\lib.win-amd64-cpython-311\chimerax\mmcif\build_ui.py -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27701copying build\lib.win-amd64-cpython-311\chimerax\mmcif\corecif.py -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27702copying build\lib.win-amd64-cpython-311\chimerax\mmcif\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27703copying build\lib.win-amd64-cpython-311\chimerax\mmcif\mmcif.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27704copying build\lib.win-amd64-cpython-311\chimerax\mmcif\mmcif_write.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27705copying build\lib.win-amd64-cpython-311\chimerax\mmcif\stdresidues.cif -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27706copying build\lib.win-amd64-cpython-311\chimerax\mmcif\uniprot_id.py -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27707copying build\lib.win-amd64-cpython-311\chimerax\mmcif\_mmcif.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27708copying build\lib.win-amd64-cpython-311\chimerax\mmcif\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mmcif
27709running install_egg_info
27710running egg_info
27711creating ChimeraX_mmCIF.egg-info
27712writing ChimeraX_mmCIF.egg-info\PKG-INFO
27713writing dependency_links to ChimeraX_mmCIF.egg-info\dependency_links.txt
27714writing requirements to ChimeraX_mmCIF.egg-info\requires.txt
27715writing top-level names to ChimeraX_mmCIF.egg-info\top_level.txt
27716writing manifest file 'ChimeraX_mmCIF.egg-info\SOURCES.txt'
27717reading manifest file 'ChimeraX_mmCIF.egg-info\SOURCES.txt'
27718writing manifest file 'ChimeraX_mmCIF.egg-info\SOURCES.txt'
27719Copying ChimeraX_mmCIF.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_mmCIF-2.16-py3.11.egg-info
27720running install_scripts
27721C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
27722 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
27723creating build\bdist.win-amd64\wheel\chimerax_mmcif-2.16.dist-info\WHEEL
27724creating 'dist\chimerax_mmcif-2.16-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
27725adding 'chimerax/mmcif/__init__.py'
27726adding 'chimerax/mmcif/_mmcif.cp311-win_amd64.pyd'
27727adding 'chimerax/mmcif/build_ui.py'
27728adding 'chimerax/mmcif/corecif.py'
27729adding 'chimerax/mmcif/gui.py'
27730adding 'chimerax/mmcif/mmcif.cp311-win_amd64.pyd'
27731adding 'chimerax/mmcif/mmcif_write.cp311-win_amd64.pyd'
27732adding 'chimerax/mmcif/stdresidues.cif'
27733adding 'chimerax/mmcif/uniprot_id.py'
27734adding 'chimerax_mmcif-2.16.dist-info/METADATA'
27735adding 'chimerax_mmcif-2.16.dist-info/WHEEL'
27736adding 'chimerax_mmcif-2.16.dist-info/top_level.txt'
27737adding 'chimerax_mmcif-2.16.dist-info/RECORD'
27738removing build\bdist.win-amd64\wheel
27739Distribution is in .\dist\ChimeraX_mmCIF-2.16-cp311-cp311-win_amd64.whl
27740INFO:
27741
27742make sync
27743make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
27744cp -av dist/*.whl ../../../build/sync
27745'dist/chimerax_mmcif-2.16-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_mmcif-2.16-cp311-cp311-win_amd64.whl'
27746make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
27747make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmcif'
27748make -C mmtf build
27749make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
27750# only need the include files
27751unzip -u mmtf-cpp-1.1.0.zip 'mmtf-cpp-1.1.0/include/**'
27752Archive: mmtf-cpp-1.1.0.zip
27753390147898c7b118a22011ba50089b8859b6d612e
27754 inflating: mmtf-cpp-1.1.0/include/mmtf.hpp
27755 creating: mmtf-cpp-1.1.0/include/mmtf/
27756 inflating: mmtf-cpp-1.1.0/include/mmtf/binary_decoder.hpp
27757 inflating: mmtf-cpp-1.1.0/include/mmtf/binary_encoder.hpp
27758 inflating: mmtf-cpp-1.1.0/include/mmtf/decoder.hpp
27759 inflating: mmtf-cpp-1.1.0/include/mmtf/encoder.hpp
27760 inflating: mmtf-cpp-1.1.0/include/mmtf/errors.hpp
27761 inflating: mmtf-cpp-1.1.0/include/mmtf/export_helpers.hpp
27762 inflating: mmtf-cpp-1.1.0/include/mmtf/map_decoder.hpp
27763 inflating: mmtf-cpp-1.1.0/include/mmtf/msgpack_decoders.hpp
27764 inflating: mmtf-cpp-1.1.0/include/mmtf/msgpack_encoders.hpp
27765 inflating: mmtf-cpp-1.1.0/include/mmtf/structure_data.hpp
27766# only need the include files
27767unzip -u msgpack-c-cpp-4.1.2.zip 'msgpack-c-cpp-4.1.2/include/**'
27768Archive: msgpack-c-cpp-4.1.2.zip
27769fb64ea0b68cda185f1e45b87713ba9cd7be3e394
27770 inflating: msgpack-c-cpp-4.1.2/include/msgpack.hpp
27771 creating: msgpack-c-cpp-4.1.2/include/msgpack/
27772 creating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/
27773 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/adaptor_base.hpp
27774 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/adaptor_base_decl.hpp
27775 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/array_ref.hpp
27776 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/array_ref_decl.hpp
27777 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/bool.hpp
27778 creating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/boost/
27779 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/boost/fusion.hpp
27780 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/boost/msgpack_variant.hpp
27781 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/boost/msgpack_variant_decl.hpp
27782 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/boost/optional.hpp
27783 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/boost/string_ref.hpp
27784 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/boost/string_view.hpp
27785 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/carray.hpp
27786 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/char_ptr.hpp
27787 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/check_container_size.hpp
27788 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/check_container_size_decl.hpp
27789 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/complex.hpp
27790 creating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/
27791 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/array.hpp
27792 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/array_char.hpp
27793 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/array_unsigned_char.hpp
27794 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/chrono.hpp
27795 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/forward_list.hpp
27796 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/reference_wrapper.hpp
27797 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/shared_ptr.hpp
27798 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/timespec.hpp
27799 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/tuple.hpp
27800 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/unique_ptr.hpp
27801 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/unordered_map.hpp
27802 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp11/unordered_set.hpp
27803 creating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp17/
27804 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp17/array_byte.hpp
27805 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp17/byte.hpp
27806 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp17/carray_byte.hpp
27807 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp17/optional.hpp
27808 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp17/string_view.hpp
27809 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp17/vector_byte.hpp
27810 creating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp20/
27811 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/cpp20/span.hpp
27812 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/define.hpp
27813 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/define_decl.hpp
27814 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/deque.hpp
27815 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/ext.hpp
27816 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/ext_decl.hpp
27817 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/fixint.hpp
27818 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/fixint_decl.hpp
27819 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/float.hpp
27820 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/int.hpp
27821 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/int_decl.hpp
27822 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/list.hpp
27823 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/map.hpp
27824 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/map_decl.hpp
27825 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/msgpack_tuple.hpp
27826 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/msgpack_tuple_decl.hpp
27827 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/nil.hpp
27828 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/nil_decl.hpp
27829 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/pair.hpp
27830 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/raw.hpp
27831 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/raw_decl.hpp
27832 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/set.hpp
27833 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/size_equal_only.hpp
27834 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/size_equal_only_decl.hpp
27835 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/string.hpp
27836 creating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/tr1/
27837 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/tr1/unordered_map.hpp
27838 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/tr1/unordered_set.hpp
27839 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/v4raw.hpp
27840 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/v4raw_decl.hpp
27841 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/vector.hpp
27842 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/vector_bool.hpp
27843 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/vector_char.hpp
27844 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/vector_unsigned_char.hpp
27845 inflating: msgpack-c-cpp-4.1.2/include/msgpack/adaptor/wstring.hpp
27846 inflating: msgpack-c-cpp-4.1.2/include/msgpack/assert.hpp
27847 inflating: msgpack-c-cpp-4.1.2/include/msgpack/cpp_config.hpp
27848 inflating: msgpack-c-cpp-4.1.2/include/msgpack/cpp_config_decl.hpp
27849 inflating: msgpack-c-cpp-4.1.2/include/msgpack/cpp_version.hpp
27850 inflating: msgpack-c-cpp-4.1.2/include/msgpack/create_object_visitor.hpp
27851 inflating: msgpack-c-cpp-4.1.2/include/msgpack/create_object_visitor_decl.hpp
27852 inflating: msgpack-c-cpp-4.1.2/include/msgpack/fbuffer.hpp
27853 inflating: msgpack-c-cpp-4.1.2/include/msgpack/fbuffer_decl.hpp
27854 inflating: msgpack-c-cpp-4.1.2/include/msgpack/gcc_atomic.hpp
27855 inflating: msgpack-c-cpp-4.1.2/include/msgpack/iterator.hpp
27856 inflating: msgpack-c-cpp-4.1.2/include/msgpack/iterator_decl.hpp
27857 inflating: msgpack-c-cpp-4.1.2/include/msgpack/meta.hpp
27858 inflating: msgpack-c-cpp-4.1.2/include/msgpack/meta_decl.hpp
27859 inflating: msgpack-c-cpp-4.1.2/include/msgpack/null_visitor.hpp
27860 inflating: msgpack-c-cpp-4.1.2/include/msgpack/null_visitor_decl.hpp
27861 inflating: msgpack-c-cpp-4.1.2/include/msgpack/object.hpp
27862 inflating: msgpack-c-cpp-4.1.2/include/msgpack/object_decl.hpp
27863 inflating: msgpack-c-cpp-4.1.2/include/msgpack/object_fwd.hpp
27864 inflating: msgpack-c-cpp-4.1.2/include/msgpack/object_fwd_decl.hpp
27865 inflating: msgpack-c-cpp-4.1.2/include/msgpack/pack.hpp
27866 inflating: msgpack-c-cpp-4.1.2/include/msgpack/pack_decl.hpp
27867 inflating: msgpack-c-cpp-4.1.2/include/msgpack/parse.hpp
27868 inflating: msgpack-c-cpp-4.1.2/include/msgpack/parse_decl.hpp
27869 inflating: msgpack-c-cpp-4.1.2/include/msgpack/parse_return.hpp
27870 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef.h
27871 creating: msgpack-c-cpp-4.1.2/include/msgpack/predef/
27872 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture.h
27873 creating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/
27874 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/alpha.h
27875 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/arm.h
27876 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/blackfin.h
27877 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/convex.h
27878 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/ia64.h
27879 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/m68k.h
27880 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/mips.h
27881 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/parisc.h
27882 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/ppc.h
27883 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/ptx.h
27884 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/pyramid.h
27885 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/rs6k.h
27886 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/sparc.h
27887 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/superh.h
27888 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/sys370.h
27889 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/sys390.h
27890 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/x86.h
27891 creating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/x86/
27892 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/x86/32.h
27893 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/x86/64.h
27894 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/architecture/z.h
27895 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/compiler.h
27896 creating: msgpack-c-cpp-4.1.2/include/msgpack/predef/compiler/
27897 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/compiler/borland.h
27898 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/compiler/clang.h
27899 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/compiler/comeau.h
27900 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/compiler/compaq.h
27901 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/compiler/diab.h
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27945 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/hardware/simd/ppc/versions.h
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27948 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/hardware/simd/x86/versions.h
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27951 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/hardware/simd/x86_amd/versions.h
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28011 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/other/workaround.h
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28014 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/platform/cloudabi.h
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28023 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/platform/windows_store.h
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28025 inflating: msgpack-c-cpp-4.1.2/include/msgpack/predef/platform/windows_uwp.h
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28029 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/
28030 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic.hpp
28031 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/
28032 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/add.hpp
28033 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/dec.hpp
28034 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/detail/
28035 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/detail/div_base.hpp
28036 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/div.hpp
28037 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/inc.hpp
28038 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/mod.hpp
28039 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/mul.hpp
28040 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/arithmetic/sub.hpp
28041 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array.hpp
28042 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/
28043 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/data.hpp
28044 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/detail/
28045 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/detail/get_data.hpp
28046 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/elem.hpp
28047 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/enum.hpp
28048 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/insert.hpp
28049 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/pop_back.hpp
28050 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/pop_front.hpp
28051 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/push_back.hpp
28052 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/push_front.hpp
28053 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/remove.hpp
28054 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/replace.hpp
28055 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/reverse.hpp
28056 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/size.hpp
28057 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/to_list.hpp
28058 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/to_seq.hpp
28059 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/array/to_tuple.hpp
28060 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/assert_msg.hpp
28061 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/cat.hpp
28062 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comma.hpp
28063 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comma_if.hpp
28064 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison.hpp
28065 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison/
28066 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison/equal.hpp
28067 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison/greater.hpp
28068 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison/greater_equal.hpp
28069 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison/less.hpp
28070 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison/less_equal.hpp
28071 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/comparison/not_equal.hpp
28072 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/config/
28073 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/config/config.hpp
28074 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/config/limits.hpp
28075 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control.hpp
28076 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/
28077 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/deduce_d.hpp
28078 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/
28079 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/dmc/
28080 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/dmc/while.hpp
28081 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/edg/
28082 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/edg/while.hpp
28083 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/msvc/
28084 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/msvc/while.hpp
28085 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/detail/while.hpp
28086 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/expr_if.hpp
28087 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/expr_iif.hpp
28088 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/if.hpp
28089 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/iif.hpp
28090 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/control/while.hpp
28091 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/debug.hpp
28092 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/debug/
28093 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/debug/assert.hpp
28094 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/debug/error.hpp
28095 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/debug/line.hpp
28096 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/dec.hpp
28097 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/
28098 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/auto_rec.hpp
28099 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/check.hpp
28100 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/dmc/
28101 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/dmc/auto_rec.hpp
28102 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/is_binary.hpp
28103 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/is_nullary.hpp
28104 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/is_unary.hpp
28105 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/null.hpp
28106 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/detail/split.hpp
28107 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/empty.hpp
28108 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/enum.hpp
28109 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/enum_params.hpp
28110 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/enum_params_with_a_default.hpp
28111 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/enum_params_with_defaults.hpp
28112 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/enum_shifted.hpp
28113 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/enum_shifted_params.hpp
28114 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/expand.hpp
28115 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/expr_if.hpp
28116 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities.hpp
28117 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/
28118 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/apply.hpp
28119 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/detail/
28120 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/detail/is_empty.hpp
28121 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/empty.hpp
28122 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/expand.hpp
28123 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/identity.hpp
28124 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/intercept.hpp
28125 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/is_1.hpp
28126 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/is_empty.hpp
28127 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/is_empty_or_1.hpp
28128 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/is_empty_variadic.hpp
28129 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/facilities/overload.hpp
28130 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/for.hpp
28131 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/identity.hpp
28132 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/if.hpp
28133 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/inc.hpp
28134 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/iterate.hpp
28135 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/iteration.hpp
28136 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/iteration/
28137 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/iteration/detail/
28138 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/iteration/detail/bounds/
28139 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/iteration/detail/bounds/lower1.hpp
28140 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/iteration/detail/bounds/lower2.hpp
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28177 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/list/detail/dmc/
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28218 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/punctuation/detail/
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28231 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/repetition/
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28233 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/repetition/deduce_z.hpp
28234 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/repetition/detail/
28235 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/repetition/detail/dmc/
28236 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/repetition/detail/dmc/for.hpp
28237 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/repetition/detail/edg/
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28240 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/repetition/detail/msvc/
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28256 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/selection.hpp
28257 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/selection/
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28259 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/selection/min.hpp
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28261 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/seq/
28262 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/seq/cat.hpp
28263 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/seq/detail/
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28294 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/slot.hpp
28295 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/slot/
28296 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/slot/counter.hpp
28297 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/slot/detail/
28298 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/slot/detail/counter.hpp
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28309 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/
28310 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/detail/
28311 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/detail/is_single_return.hpp
28312 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/eat.hpp
28313 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/elem.hpp
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28318 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/push_back.hpp
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28320 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/rem.hpp
28321 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/tuple/remove.hpp
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28328 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/variadic.hpp
28329 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/variadic/
28330 creating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/variadic/detail/
28331 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/variadic/detail/is_single_return.hpp
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28338 inflating: msgpack-c-cpp-4.1.2/include/msgpack/preprocessor/while.hpp
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28341 inflating: msgpack-c-cpp-4.1.2/include/msgpack/sbuffer_decl.hpp
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28344 inflating: msgpack-c-cpp-4.1.2/include/msgpack/unpack.hpp
28345 inflating: msgpack-c-cpp-4.1.2/include/msgpack/unpack_decl.hpp
28346 inflating: msgpack-c-cpp-4.1.2/include/msgpack/unpack_define.hpp
28347 inflating: msgpack-c-cpp-4.1.2/include/msgpack/unpack_exception.hpp
28348 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/
28349 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/
28350 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/adaptor_base.hpp
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28354 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/bool.hpp
28355 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/boost/
28356 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/boost/fusion.hpp
28357 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/boost/msgpack_variant.hpp
28358 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/boost/msgpack_variant_decl.hpp
28359 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/boost/optional.hpp
28360 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/boost/string_ref.hpp
28361 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/boost/string_view.hpp
28362 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/carray.hpp
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28364 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/check_container_size.hpp
28365 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/check_container_size_decl.hpp
28366 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/complex.hpp
28367 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/
28368 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/array.hpp
28369 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/array_char.hpp
28370 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/array_unsigned_char.hpp
28371 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/chrono.hpp
28372 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/forward_list.hpp
28373 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/reference_wrapper.hpp
28374 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/shared_ptr.hpp
28375 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/timespec.hpp
28376 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/tuple.hpp
28377 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/unique_ptr.hpp
28378 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/unordered_map.hpp
28379 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp11/unordered_set.hpp
28380 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp17/
28381 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp17/array_byte.hpp
28382 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp17/byte.hpp
28383 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp17/carray_byte.hpp
28384 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp17/optional.hpp
28385 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp17/string_view.hpp
28386 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp17/vector_byte.hpp
28387 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp20/
28388 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/cpp20/span.hpp
28389 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/define.hpp
28390 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/define_decl.hpp
28391 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/deque.hpp
28392 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/
28393 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp03_define_array.hpp
28394 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp03_define_array_decl.hpp
28395 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp03_define_map.hpp
28396 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp03_define_map_decl.hpp
28397 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp03_msgpack_tuple.hpp
28398 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp03_msgpack_tuple_decl.hpp
28399 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp11_convert_helper.hpp
28400 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp11_define_array.hpp
28401 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp11_define_array_decl.hpp
28402 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp11_define_map.hpp
28403 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp11_define_map_decl.hpp
28404 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp11_msgpack_tuple.hpp
28405 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/detail/cpp11_msgpack_tuple_decl.hpp
28406 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/ext.hpp
28407 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/ext_decl.hpp
28408 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/fixint.hpp
28409 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/fixint_decl.hpp
28410 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/float.hpp
28411 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/int.hpp
28412 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/int_decl.hpp
28413 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/list.hpp
28414 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/map.hpp
28415 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/map_decl.hpp
28416 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/msgpack_tuple.hpp
28417 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/msgpack_tuple_decl.hpp
28418 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/nil.hpp
28419 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/nil_decl.hpp
28420 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/pair.hpp
28421 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/raw.hpp
28422 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/raw_decl.hpp
28423 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/set.hpp
28424 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/size_equal_only.hpp
28425 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/size_equal_only_decl.hpp
28426 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/string.hpp
28427 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/tr1/
28428 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/tr1/unordered_map.hpp
28429 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/tr1/unordered_set.hpp
28430 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/v4raw.hpp
28431 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/v4raw_decl.hpp
28432 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/vector.hpp
28433 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/vector_bool.hpp
28434 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/vector_char.hpp
28435 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/vector_unsigned_char.hpp
28436 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/adaptor/wstring.hpp
28437 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/cpp_config.hpp
28438 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/cpp_config_decl.hpp
28439 creating: msgpack-c-cpp-4.1.2/include/msgpack/v1/detail/
28440 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/detail/cpp03_zone.hpp
28441 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/detail/cpp03_zone_decl.hpp
28442 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/detail/cpp11_zone.hpp
28443 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/detail/cpp11_zone_decl.hpp
28444 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/fbuffer.hpp
28445 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/fbuffer_decl.hpp
28446 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/iterator.hpp
28447 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/iterator_decl.hpp
28448 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/meta.hpp
28449 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/meta_decl.hpp
28450 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/object.hpp
28451 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/object_decl.hpp
28452 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/object_fwd.hpp
28453 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/object_fwd_decl.hpp
28454 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/pack.hpp
28455 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/pack_decl.hpp
28456 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/parse_return.hpp
28457 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/sbuffer.hpp
28458 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/sbuffer_decl.hpp
28459 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/unpack.hpp
28460 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/unpack_decl.hpp
28461 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/unpack_exception.hpp
28462 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/version.hpp
28463 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/versioning.hpp
28464 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/vrefbuffer.hpp
28465 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/vrefbuffer_decl.hpp
28466 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/zbuffer.hpp
28467 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/zbuffer_decl.hpp
28468 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/zone.hpp
28469 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v1/zone_decl.hpp
28470 creating: msgpack-c-cpp-4.1.2/include/msgpack/v2/
28471 creating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/
28472 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/adaptor_base.hpp
28473 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/adaptor_base_decl.hpp
28474 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/array_ref_decl.hpp
28475 creating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/boost/
28476 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/boost/msgpack_variant_decl.hpp
28477 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/check_container_size_decl.hpp
28478 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/define_decl.hpp
28479 creating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/detail/
28480 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/detail/cpp03_define_array_decl.hpp
28481 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/detail/cpp03_define_map_decl.hpp
28482 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/detail/cpp03_msgpack_tuple_decl.hpp
28483 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/detail/cpp11_define_array_decl.hpp
28484 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/detail/cpp11_define_map_decl.hpp
28485 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/detail/cpp11_msgpack_tuple_decl.hpp
28486 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/ext_decl.hpp
28487 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/fixint_decl.hpp
28488 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/int_decl.hpp
28489 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/map_decl.hpp
28490 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/msgpack_tuple_decl.hpp
28491 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/nil_decl.hpp
28492 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/raw_decl.hpp
28493 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/size_equal_only_decl.hpp
28494 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/adaptor/v4raw_decl.hpp
28495 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/cpp_config_decl.hpp
28496 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/create_object_visitor.hpp
28497 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/create_object_visitor_decl.hpp
28498 creating: msgpack-c-cpp-4.1.2/include/msgpack/v2/detail/
28499 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/detail/cpp03_zone_decl.hpp
28500 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/detail/cpp11_zone_decl.hpp
28501 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/fbuffer_decl.hpp
28502 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/iterator_decl.hpp
28503 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/meta_decl.hpp
28504 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/null_visitor.hpp
28505 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/null_visitor_decl.hpp
28506 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/object.hpp
28507 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/object_decl.hpp
28508 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/object_fwd.hpp
28509 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/object_fwd_decl.hpp
28510 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/pack_decl.hpp
28511 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/parse.hpp
28512 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/parse_decl.hpp
28513 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/parse_return.hpp
28514 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/sbuffer_decl.hpp
28515 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/unpack.hpp
28516 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/unpack_decl.hpp
28517 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/vrefbuffer_decl.hpp
28518 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/x3_parse.hpp
28519 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/x3_parse_decl.hpp
28520 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/x3_unpack.hpp
28521 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/x3_unpack_decl.hpp
28522 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/zbuffer_decl.hpp
28523 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v2/zone_decl.hpp
28524 creating: msgpack-c-cpp-4.1.2/include/msgpack/v3/
28525 creating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/
28526 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/adaptor_base.hpp
28527 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/adaptor_base_decl.hpp
28528 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/array_ref_decl.hpp
28529 creating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/boost/
28530 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/boost/msgpack_variant_decl.hpp
28531 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/check_container_size_decl.hpp
28532 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/define_decl.hpp
28533 creating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/detail/
28534 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/detail/cpp03_define_array_decl.hpp
28535 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/detail/cpp03_define_map_decl.hpp
28536 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/detail/cpp03_msgpack_tuple_decl.hpp
28537 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/detail/cpp11_define_array_decl.hpp
28538 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/detail/cpp11_define_map_decl.hpp
28539 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/detail/cpp11_msgpack_tuple_decl.hpp
28540 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/ext_decl.hpp
28541 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/fixint_decl.hpp
28542 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/int_decl.hpp
28543 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/map_decl.hpp
28544 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/msgpack_tuple_decl.hpp
28545 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/nil_decl.hpp
28546 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/raw_decl.hpp
28547 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/size_equal_only_decl.hpp
28548 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/adaptor/v4raw_decl.hpp
28549 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/cpp_config_decl.hpp
28550 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/create_object_visitor_decl.hpp
28551 creating: msgpack-c-cpp-4.1.2/include/msgpack/v3/detail/
28552 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/detail/cpp03_zone_decl.hpp
28553 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/detail/cpp11_zone_decl.hpp
28554 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/fbuffer_decl.hpp
28555 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/iterator_decl.hpp
28556 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/meta_decl.hpp
28557 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/null_visitor_decl.hpp
28558 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/object_decl.hpp
28559 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/object_fwd.hpp
28560 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/object_fwd_decl.hpp
28561 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/pack_decl.hpp
28562 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/parse.hpp
28563 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/parse_decl.hpp
28564 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/parse_return.hpp
28565 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/sbuffer_decl.hpp
28566 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/unpack.hpp
28567 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/unpack_decl.hpp
28568 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/vrefbuffer_decl.hpp
28569 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/x3_parse_decl.hpp
28570 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/x3_unpack.hpp
28571 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/x3_unpack_decl.hpp
28572 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/zbuffer_decl.hpp
28573 inflating: msgpack-c-cpp-4.1.2/include/msgpack/v3/zone_decl.hpp
28574 inflating: msgpack-c-cpp-4.1.2/include/msgpack/version.hpp
28575 inflating: msgpack-c-cpp-4.1.2/include/msgpack/version_master.hpp
28576 inflating: msgpack-c-cpp-4.1.2/include/msgpack/versioning.hpp
28577 inflating: msgpack-c-cpp-4.1.2/include/msgpack/vrefbuffer.hpp
28578 inflating: msgpack-c-cpp-4.1.2/include/msgpack/vrefbuffer_decl.hpp
28579 inflating: msgpack-c-cpp-4.1.2/include/msgpack/x3_parse.hpp
28580 inflating: msgpack-c-cpp-4.1.2/include/msgpack/x3_parse_decl.hpp
28581 inflating: msgpack-c-cpp-4.1.2/include/msgpack/x3_unpack.hpp
28582 inflating: msgpack-c-cpp-4.1.2/include/msgpack/x3_unpack_decl.hpp
28583 inflating: msgpack-c-cpp-4.1.2/include/msgpack/zbuffer.hpp
28584 inflating: msgpack-c-cpp-4.1.2/include/msgpack/zbuffer_decl.hpp
28585 inflating: msgpack-c-cpp-4.1.2/include/msgpack/zone.hpp
28586 inflating: msgpack-c-cpp-4.1.2/include/msgpack/zone_decl.hpp
28587if [ -z "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe" ]; then \
28588 echo "missing ChimeraX application's python"; exit 1; \
28589else \
28590 PYTHONNOUSERSITE=1 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
28591fi
28592INFO:
28593Executing: devel build . exit true
28594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
28595!!
28596
28597 ********************************************************************************
28598 Please consider removing the following classifiers in favor of a SPDX license expression:
28599
28600 License :: Free for non-commercial use
28601
28602 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
28603 ********************************************************************************
28604
28605!!
28606 self._finalize_license_expression()
28607running build
28608running build_py
28609creating build\lib.win-amd64-cpython-311\chimerax\mmtf
28610copying src\mmtf.py -> build\lib.win-amd64-cpython-311\chimerax\mmtf
28611copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\mmtf
28612running build_ext
28613building 'chimerax.mmtf._mmtf' extension
28614creating build\temp.win-amd64-cpython-311\Release\_mmtf
28615"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMSGPACK_ENDIAN_LITTLE_BYTE=1 -DMSGPACK_NO_BOOST=1 -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -Immtf-cpp-1.1.0/include -Imsgpack-c-cpp-4.1.2/include -Iboost_1_80_0 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_mmtf/mmtf.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_mmtf\mmtf.obj
28616mmtf.cpp
28617C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(900): warning C4267: '=': conversion from 'size_t' to '_Ty', possible loss of data
28618 with
28619 [
28620 _Ty=int32_t
28621 ]
28622C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(912): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
28623C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(916): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
28624C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(920): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
28625C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(963): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
28626C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(967): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
28627C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(971): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
28628C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(975): warning C4267: '+=': conversion from 'size_t' to 'int', possible loss of data
28629C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(1043): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
28630C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_decoder.hpp(195): warning C4267: '=': conversion from 'size_t' to 'uint32_t', possible loss of data
28631C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_decoder.hpp(281): warning C4267: 'argument': conversion from 'size_t' to 'int32_t', possible loss of data
28632C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_decoder.hpp(308): warning C4267: 'argument': conversion from 'size_t' to 'int32_t', possible loss of data
28633C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_decoder.hpp(329): warning C4267: 'argument': conversion from 'size_t' to 'int32_t', possible loss of data
28634C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_decoder.hpp(375): warning C4267: 'argument': conversion from 'size_t' to 'int32_t', possible loss of data
28635C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_decoder.hpp(396): warning C4267: 'argument': conversion from 'size_t' to 'int32_t', possible loss of data
28636C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_decoder.hpp(419): warning C4267: 'argument': conversion from 'size_t' to 'int32_t', possible loss of data
28637C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(237): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28638C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(247): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28639C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(259): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28640C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(276): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28641C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(288): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28642C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(300): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28643C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(313): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28644C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\binary_encoder.hpp(327): warning C4267: 'argument': conversion from 'size_t' to 'uint32_t', possible loss of data
28645C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
28646c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28647C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
28648C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
28649c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
28651C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int32_t>>' needs to have dll-interface to be used by clients of class 'element::Element'
28652C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int32_t>>'
28653C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
28654C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
28655C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int32_t>>' needs to have dll-interface to be used by clients of class 'element::Element'
28656C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int32_t>>'
28657C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
28658C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28659C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int32_t>>' needs to have dll-interface to be used by clients of class 'element::Element'
28660C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int32_t>>'
28661C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
28662C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
28663C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
28664C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
28665C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
28666c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28667C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
28668C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28669C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
28670C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28671C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
28672C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28673C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
28674C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28675C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
28676C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28677C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
28678C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28679C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\msgpack-c-cpp-4.1.2\include\msgpack/v1/adaptor/ext.hpp(69): note: see declaration of 'std::vector<char,std::allocator<char>>'
28680C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28681C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\msgpack-c-cpp-4.1.2\include\msgpack/v1/adaptor/ext.hpp(69): note: see declaration of 'std::vector<char,std::allocator<char>>'
28682C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
28683c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28684C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
28685C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
28686c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28687C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
28688c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28689C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
28690C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
28691C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
28692C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
28693C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
28694C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
28695C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
28696C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
28697C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
28698C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
28699C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28700C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
28701c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28702C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
28703C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28704C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
28705C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28706C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
28707C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28708c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28709C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28710c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28711C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28712c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28713C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28714c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28715C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28716c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28717C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28718c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28719C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28720c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28721C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28722c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28723C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28724c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28725C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28726c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28727C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28728c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28729C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28730c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28731C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28732c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28733C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28734c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28735C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28736c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28737C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28738c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28739C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28740c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28741C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28742c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28743C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28744c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28745C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28746c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28747C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28748c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28749C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28750c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28751C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28752c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28753C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28754c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28755C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28756c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28757C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28758c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28759C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28760c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28761C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28762c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28763C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28764c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28765C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28766c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28767C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28768c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28769C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28770c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28771C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28772c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28773C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28774c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28775C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28776c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28777C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28778c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28779C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28780c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28781C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28782c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28783C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28784c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28785C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28786c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28787C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28788c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28789C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
28790c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28791C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
28792C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
28793C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int32_t>>,std::allocator<std::set<int,std::less<int>,std::allocator<int32_t>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
28794C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int32_t>>,std::allocator<std::set<int,std::less<int>,std::allocator<int32_t>>>>'
28795C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
28796C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
28797C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
28798C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
28799C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
28800c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28801C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
28802C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
28803C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
28804C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
28805c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28806C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
28807C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
28808C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
28809C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
28810C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
28811C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
28812c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28813C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
28814C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28815C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
28816C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28817C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
28818C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28819C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
28820C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28821C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>'
28822C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28823C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
28824C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28825C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
28826C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28827C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
28828C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28829c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28830C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
28831C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>'
28832C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
28833c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28834C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
28835C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
28836C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
28837C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
28838C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
28839C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
28840C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
28841C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
28842C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
28843C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
28844c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28845C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
28846C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28847C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
28848C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28849c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28850C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28851c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28852C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28853c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28854C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28855C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28856C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<std::string,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28857C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(55): note: see declaration of 'std::vector<std::string,std::allocator<std::string>>'
28858C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28859C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28860C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28861C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28862C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28863C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28864C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28865C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28866C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<std::string,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28867C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\structure_data.hpp(55): note: see declaration of 'std::vector<std::string,std::allocator<std::string>>'
28868C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28869C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28870C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28871C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28872C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28873C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28874C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28875C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28876C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28877C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28878C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28879C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\mmtf\mmtf-cpp-1.1.0\include\mmtf\map_decoder.hpp(117): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
28880C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
28881C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
28882C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
28883C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
28884c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28885C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
28886C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
28887C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
28888C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
28889C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
28890C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
28891C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
28892C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
28893C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
28894C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
28895c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28896C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
28897C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
28898C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
28899C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
28900C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
28901C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
28902C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
28903C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
28904c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28905C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
28906C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
28907C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
28908C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
28909C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
28910c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28911C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
28912C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
28913c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28914C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
28915C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
28916c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28917C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
28918C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
28919C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
28920C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
28921C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
28922c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28923C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
28924c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28925C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
28926C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
28927C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<std::string,std::allocator<std::string>>>>>'
28928C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
28929c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28930C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
28931C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
28932C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
28933c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
28934C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
28935C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/tmpl/Residue.h(53): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
28936_mmtf/mmtf.cpp(152): warning C4267: '=': conversion from 'size_t' to '_Ty', possible loss of data
28937 with
28938 [
28939 _Ty=int32_t
28940 ]
28941_mmtf/mmtf.cpp(217): warning C4267: '+=': conversion from 'size_t' to 'int32_t', possible loss of data
28942_mmtf/mmtf.cpp(349): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
28943_mmtf/mmtf.cpp(349): warning C4267: 'initializing': conversion from 'size_t' to 'const int', possible loss of data
28944"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib liblogger.lib libarrays.lib libpdbconnect.lib /EXPORT:PyInit__mmtf build\temp.win-amd64-cpython-311\Release\_mmtf\mmtf.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\mmtf\_mmtf.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_mmtf\_mmtf.cp311-win_amd64.lib ws2_32.lib
28945 Creating library build\temp.win-amd64-cpython-311\Release\_mmtf\_mmtf.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_mmtf\_mmtf.cp311-win_amd64.exp
28946Generating code
28947Finished generating code
28948running bdist_wheel
28949installing to build\bdist.win-amd64\wheel
28950running install
28951running install_lib
28952running build_ext
28953creating build\bdist.win-amd64\wheel
28954creating build\bdist.win-amd64\wheel\chimerax
28955creating build\bdist.win-amd64\wheel\chimerax\mmtf
28956copying build\lib.win-amd64-cpython-311\chimerax\mmtf\mmtf.py -> build\bdist.win-amd64\wheel\.\chimerax\mmtf
28957copying build\lib.win-amd64-cpython-311\chimerax\mmtf\_mmtf.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\mmtf
28958copying build\lib.win-amd64-cpython-311\chimerax\mmtf\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mmtf
28959running install_egg_info
28960running egg_info
28961creating ChimeraX_MMTF.egg-info
28962writing ChimeraX_MMTF.egg-info\PKG-INFO
28963writing dependency_links to ChimeraX_MMTF.egg-info\dependency_links.txt
28964writing requirements to ChimeraX_MMTF.egg-info\requires.txt
28965writing top-level names to ChimeraX_MMTF.egg-info\top_level.txt
28966writing manifest file 'ChimeraX_MMTF.egg-info\SOURCES.txt'
28967reading manifest file 'ChimeraX_MMTF.egg-info\SOURCES.txt'
28968writing manifest file 'ChimeraX_MMTF.egg-info\SOURCES.txt'
28969Copying ChimeraX_MMTF.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MMTF-2.2-py3.11.egg-info
28970running install_scripts
28971C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
28972 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
28973creating build\bdist.win-amd64\wheel\chimerax_mmtf-2.2.dist-info\WHEEL
28974creating 'dist\chimerax_mmtf-2.2-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
28975adding 'chimerax/mmtf/__init__.py'
28976adding 'chimerax/mmtf/_mmtf.cp311-win_amd64.pyd'
28977adding 'chimerax/mmtf/mmtf.py'
28978adding 'chimerax_mmtf-2.2.dist-info/METADATA'
28979adding 'chimerax_mmtf-2.2.dist-info/WHEEL'
28980adding 'chimerax_mmtf-2.2.dist-info/top_level.txt'
28981adding 'chimerax_mmtf-2.2.dist-info/RECORD'
28982removing build\bdist.win-amd64\wheel
28983Distribution is in .\dist\ChimeraX_MMTF-2.2-cp311-cp311-win_amd64.whl
28984INFO:
28985
28986make sync
28987make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
28988cp -av dist/*.whl /home/goddard/ucsf/chimerax/build/sync
28989'dist/chimerax_mmtf-2.2-cp311-cp311-win_amd64.whl' -> '/home/goddard/ucsf/chimerax/build/sync/chimerax_mmtf-2.2-cp311-cp311-win_amd64.whl'
28990make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
28991make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mmtf'
28992make -C model_archive build
28993make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
28994if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
28995 echo "missing ChimeraX application's python"; exit 1; \
28996else \
28997 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
28998fi
28999INFO:
29000Executing: devel build . exit true
29001C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29002!!
29003
29004 ********************************************************************************
29005 Please consider removing the following classifiers in favor of a SPDX license expression:
29006
29007 License :: Free for non-commercial use
29008
29009 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29010 ********************************************************************************
29011
29012!!
29013 self._finalize_license_expression()
29014running build
29015running build_py
29016creating build\lib\chimerax\model_archive
29017copying src\ma_fetch.py -> build\lib\chimerax\model_archive
29018copying src\modelcif_pae.py -> build\lib\chimerax\model_archive
29019copying src\__init__.py -> build\lib\chimerax\model_archive
29020running bdist_wheel
29021installing to build\bdist.win-amd64\wheel
29022running install
29023running install_lib
29024creating build\bdist.win-amd64\wheel
29025creating build\bdist.win-amd64\wheel\chimerax
29026creating build\bdist.win-amd64\wheel\chimerax\model_archive
29027copying build\lib\chimerax\model_archive\ma_fetch.py -> build\bdist.win-amd64\wheel\.\chimerax\model_archive
29028copying build\lib\chimerax\model_archive\modelcif_pae.py -> build\bdist.win-amd64\wheel\.\chimerax\model_archive
29029copying build\lib\chimerax\model_archive\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\model_archive
29030running install_egg_info
29031running egg_info
29032creating ChimeraX_ModelArchive.egg-info
29033writing ChimeraX_ModelArchive.egg-info\PKG-INFO
29034writing dependency_links to ChimeraX_ModelArchive.egg-info\dependency_links.txt
29035writing requirements to ChimeraX_ModelArchive.egg-info\requires.txt
29036writing top-level names to ChimeraX_ModelArchive.egg-info\top_level.txt
29037writing manifest file 'ChimeraX_ModelArchive.egg-info\SOURCES.txt'
29038reading manifest file 'ChimeraX_ModelArchive.egg-info\SOURCES.txt'
29039writing manifest file 'ChimeraX_ModelArchive.egg-info\SOURCES.txt'
29040Copying ChimeraX_ModelArchive.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ModelArchive-1.0-py3.11.egg-info
29041running install_scripts
29042creating build\bdist.win-amd64\wheel\chimerax_modelarchive-1.0.dist-info\WHEEL
29043creating 'dist\chimerax_modelarchive-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29044adding 'chimerax/model_archive/__init__.py'
29045adding 'chimerax/model_archive/ma_fetch.py'
29046adding 'chimerax/model_archive/modelcif_pae.py'
29047adding 'chimerax_modelarchive-1.0.dist-info/METADATA'
29048adding 'chimerax_modelarchive-1.0.dist-info/WHEEL'
29049adding 'chimerax_modelarchive-1.0.dist-info/top_level.txt'
29050adding 'chimerax_modelarchive-1.0.dist-info/RECORD'
29051removing build\bdist.win-amd64\wheel
29052Distribution is in .\dist\ChimeraX_ModelArchive-1.0-py3-none-any.whl
29053INFO:
29054
29055make sync
29056make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
29057cp -av dist/*.whl ../../../build/sync
29058'dist/chimerax_modelarchive-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_modelarchive-1.0-py3-none-any.whl'
29059make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
29060make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_archive'
29061make -C model_panel build
29062make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
29063if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29064 echo "missing ChimeraX application's python"; exit 1; \
29065else \
29066 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29067fi
29068INFO:
29069Executing: devel build . exit true
29070C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29071!!
29072
29073 ********************************************************************************
29074 Please consider removing the following classifiers in favor of a SPDX license expression:
29075
29076 License :: Free for non-commercial use
29077
29078 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29079 ********************************************************************************
29080
29081!!
29082 self._finalize_license_expression()
29083running build
29084running build_py
29085creating build\lib\chimerax\model_panel
29086copying src\tool.py -> build\lib\chimerax\model_panel
29087copying src\__init__.py -> build\lib\chimerax\model_panel
29088running bdist_wheel
29089installing to build\bdist.win-amd64\wheel
29090running install
29091running install_lib
29092creating build\bdist.win-amd64\wheel
29093creating build\bdist.win-amd64\wheel\chimerax
29094creating build\bdist.win-amd64\wheel\chimerax\model_panel
29095copying build\lib\chimerax\model_panel\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\model_panel
29096copying build\lib\chimerax\model_panel\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\model_panel
29097running install_egg_info
29098running egg_info
29099creating ChimeraX_ModelPanel.egg-info
29100writing ChimeraX_ModelPanel.egg-info\PKG-INFO
29101writing dependency_links to ChimeraX_ModelPanel.egg-info\dependency_links.txt
29102writing requirements to ChimeraX_ModelPanel.egg-info\requires.txt
29103writing top-level names to ChimeraX_ModelPanel.egg-info\top_level.txt
29104writing manifest file 'ChimeraX_ModelPanel.egg-info\SOURCES.txt'
29105reading manifest file 'ChimeraX_ModelPanel.egg-info\SOURCES.txt'
29106writing manifest file 'ChimeraX_ModelPanel.egg-info\SOURCES.txt'
29107Copying ChimeraX_ModelPanel.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ModelPanel-1.6-py3.11.egg-info
29108running install_scripts
29109creating build\bdist.win-amd64\wheel\chimerax_modelpanel-1.6.dist-info\WHEEL
29110creating 'dist\chimerax_modelpanel-1.6-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29111adding 'chimerax/model_panel/__init__.py'
29112adding 'chimerax/model_panel/tool.py'
29113adding 'chimerax_modelpanel-1.6.dist-info/METADATA'
29114adding 'chimerax_modelpanel-1.6.dist-info/WHEEL'
29115adding 'chimerax_modelpanel-1.6.dist-info/top_level.txt'
29116adding 'chimerax_modelpanel-1.6.dist-info/RECORD'
29117removing build\bdist.win-amd64\wheel
29118Distribution is in .\dist\ChimeraX_ModelPanel-1.6-py3-none-any.whl
29119INFO:
29120
29121make sync
29122make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
29123cp -av dist/*.whl ../../../build/sync
29124'dist/chimerax_modelpanel-1.6-py3-none-any.whl' -> '../../../build/sync/chimerax_modelpanel-1.6-py3-none-any.whl'
29125make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
29126make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/model_panel'
29127make -C modeller build
29128make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
29129if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29130 echo "missing ChimeraX application's python"; exit 1; \
29131else \
29132 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29133fi
29134INFO:
29135Executing: devel build . exit true
29136C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
29137!!
29138
29139 ********************************************************************************
29140 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
29141
29142 By 2026-Feb-18, you need to update your project and remove deprecated calls
29143 or your builds will no longer be supported.
29144
29145 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29146 ********************************************************************************
29147
29148!!
29149 corresp(dist, value, root_dir)
29150running build
29151running build_py
29152creating build\lib\chimerax\modeller
29153copying src\cmd.py -> build\lib\chimerax\modeller
29154copying src\common.py -> build\lib\chimerax\modeller
29155copying src\comparative.py -> build\lib\chimerax\modeller
29156copying src\loops.py -> build\lib\chimerax\modeller
29157copying src\scores.py -> build\lib\chimerax\modeller
29158copying src\script_head.py -> build\lib\chimerax\modeller
29159copying src\script_tail.py -> build\lib\chimerax\modeller
29160copying src\settings.py -> build\lib\chimerax\modeller
29161copying src\tool.py -> build\lib\chimerax\modeller
29162copying src\__init__.py -> build\lib\chimerax\modeller
29163running bdist_wheel
29164installing to build\bdist.win-amd64\wheel
29165running install
29166running install_lib
29167creating build\bdist.win-amd64\wheel
29168creating build\bdist.win-amd64\wheel\chimerax
29169creating build\bdist.win-amd64\wheel\chimerax\modeller
29170copying build\lib\chimerax\modeller\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29171copying build\lib\chimerax\modeller\common.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29172copying build\lib\chimerax\modeller\comparative.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29173copying build\lib\chimerax\modeller\loops.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29174copying build\lib\chimerax\modeller\scores.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29175copying build\lib\chimerax\modeller\script_head.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29176copying build\lib\chimerax\modeller\script_tail.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29177copying build\lib\chimerax\modeller\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29178copying build\lib\chimerax\modeller\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29179copying build\lib\chimerax\modeller\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\modeller
29180running install_egg_info
29181running egg_info
29182creating ChimeraX_Modeller.egg-info
29183writing ChimeraX_Modeller.egg-info\PKG-INFO
29184writing dependency_links to ChimeraX_Modeller.egg-info\dependency_links.txt
29185writing requirements to ChimeraX_Modeller.egg-info\requires.txt
29186writing top-level names to ChimeraX_Modeller.egg-info\top_level.txt
29187writing manifest file 'ChimeraX_Modeller.egg-info\SOURCES.txt'
29188reading manifest file 'ChimeraX_Modeller.egg-info\SOURCES.txt'
29189writing manifest file 'ChimeraX_Modeller.egg-info\SOURCES.txt'
29190Copying ChimeraX_Modeller.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Modeller-1.5.22-py3.11.egg-info
29191running install_scripts
29192creating build\bdist.win-amd64\wheel\chimerax_modeller-1.5.22.dist-info\WHEEL
29193creating 'dist\chimerax_modeller-1.5.22-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29194adding 'chimerax/modeller/__init__.py'
29195adding 'chimerax/modeller/cmd.py'
29196adding 'chimerax/modeller/common.py'
29197adding 'chimerax/modeller/comparative.py'
29198adding 'chimerax/modeller/loops.py'
29199adding 'chimerax/modeller/scores.py'
29200adding 'chimerax/modeller/script_head.py'
29201adding 'chimerax/modeller/script_tail.py'
29202adding 'chimerax/modeller/settings.py'
29203adding 'chimerax/modeller/tool.py'
29204adding 'chimerax_modeller-1.5.22.dist-info/METADATA'
29205adding 'chimerax_modeller-1.5.22.dist-info/WHEEL'
29206adding 'chimerax_modeller-1.5.22.dist-info/top_level.txt'
29207adding 'chimerax_modeller-1.5.22.dist-info/RECORD'
29208removing build\bdist.win-amd64\wheel
29209Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\modeller\dist\chimerax_modeller-1.5.22-py3-none-any.whl
29210INFO:
29211
29212make sync
29213make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
29214cp -av dist/*.whl ../../../build/sync
29215'dist/chimerax_modeller-1.5.22-py3-none-any.whl' -> '../../../build/sync/chimerax_modeller-1.5.22-py3-none-any.whl'
29216make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
29217make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/modeller'
29218make -C mol2 build
29219make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
29220if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29221 echo "missing ChimeraX application's python"; exit 1; \
29222else \
29223 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29224fi
29225INFO:
29226Executing: devel build . exit true
29227C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29228!!
29229
29230 ********************************************************************************
29231 Please consider removing the following classifiers in favor of a SPDX license expression:
29232
29233 License :: Free for non-commercial use
29234
29235 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29236 ********************************************************************************
29237
29238!!
29239 self._finalize_license_expression()
29240running build
29241running build_py
29242creating build\lib\chimerax\mol2
29243copying src\io.py -> build\lib\chimerax\mol2
29244copying src\__init__.py -> build\lib\chimerax\mol2
29245running bdist_wheel
29246installing to build\bdist.win-amd64\wheel
29247running install
29248running install_lib
29249creating build\bdist.win-amd64\wheel
29250creating build\bdist.win-amd64\wheel\chimerax
29251creating build\bdist.win-amd64\wheel\chimerax\mol2
29252copying build\lib\chimerax\mol2\io.py -> build\bdist.win-amd64\wheel\.\chimerax\mol2
29253copying build\lib\chimerax\mol2\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mol2
29254running install_egg_info
29255running egg_info
29256creating ChimeraX_Mol2.egg-info
29257writing ChimeraX_Mol2.egg-info\PKG-INFO
29258writing dependency_links to ChimeraX_Mol2.egg-info\dependency_links.txt
29259writing requirements to ChimeraX_Mol2.egg-info\requires.txt
29260writing top-level names to ChimeraX_Mol2.egg-info\top_level.txt
29261writing manifest file 'ChimeraX_Mol2.egg-info\SOURCES.txt'
29262reading manifest file 'ChimeraX_Mol2.egg-info\SOURCES.txt'
29263writing manifest file 'ChimeraX_Mol2.egg-info\SOURCES.txt'
29264Copying ChimeraX_Mol2.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Mol2-2.0.3-py3.11.egg-info
29265running install_scripts
29266creating build\bdist.win-amd64\wheel\chimerax_mol2-2.0.3.dist-info\WHEEL
29267creating 'dist\chimerax_mol2-2.0.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29268adding 'chimerax/mol2/__init__.py'
29269adding 'chimerax/mol2/io.py'
29270adding 'chimerax_mol2-2.0.3.dist-info/METADATA'
29271adding 'chimerax_mol2-2.0.3.dist-info/WHEEL'
29272adding 'chimerax_mol2-2.0.3.dist-info/top_level.txt'
29273adding 'chimerax_mol2-2.0.3.dist-info/RECORD'
29274removing build\bdist.win-amd64\wheel
29275Distribution is in .\dist\ChimeraX_Mol2-2.0.3-py3-none-any.whl
29276INFO:
29277
29278make sync
29279make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
29280cp -av dist/*.whl ../../../build/sync
29281'dist/chimerax_mol2-2.0.3-py3-none-any.whl' -> '../../../build/sync/chimerax_mol2-2.0.3-py3-none-any.whl'
29282make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
29283make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mol2'
29284make -C mole build
29285make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
29286if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29287 echo "missing ChimeraX application's python"; exit 1; \
29288else \
29289 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29290fi
29291INFO:
29292Executing: devel build . exit true
29293C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29294!!
29295
29296 ********************************************************************************
29297 Please consider removing the following classifiers in favor of a SPDX license expression:
29298
29299 License :: Free for non-commercial use
29300
29301 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29302 ********************************************************************************
29303
29304!!
29305 self._finalize_license_expression()
29306running build
29307running build_py
29308creating build\lib\chimerax\mole
29309copying src\mole.py -> build\lib\chimerax\mole
29310copying src\__init__.py -> build\lib\chimerax\mole
29311running bdist_wheel
29312installing to build\bdist.win-amd64\wheel
29313running install
29314running install_lib
29315creating build\bdist.win-amd64\wheel
29316creating build\bdist.win-amd64\wheel\chimerax
29317creating build\bdist.win-amd64\wheel\chimerax\mole
29318copying build\lib\chimerax\mole\mole.py -> build\bdist.win-amd64\wheel\.\chimerax\mole
29319copying build\lib\chimerax\mole\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mole
29320running install_egg_info
29321running egg_info
29322creating ChimeraX_Mole.egg-info
29323writing ChimeraX_Mole.egg-info\PKG-INFO
29324writing dependency_links to ChimeraX_Mole.egg-info\dependency_links.txt
29325writing requirements to ChimeraX_Mole.egg-info\requires.txt
29326writing top-level names to ChimeraX_Mole.egg-info\top_level.txt
29327writing manifest file 'ChimeraX_Mole.egg-info\SOURCES.txt'
29328reading manifest file 'ChimeraX_Mole.egg-info\SOURCES.txt'
29329writing manifest file 'ChimeraX_Mole.egg-info\SOURCES.txt'
29330Copying ChimeraX_Mole.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Mole-1.0-py3.11.egg-info
29331running install_scripts
29332creating build\bdist.win-amd64\wheel\chimerax_mole-1.0.dist-info\WHEEL
29333creating 'dist\chimerax_mole-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29334adding 'chimerax/mole/__init__.py'
29335adding 'chimerax/mole/mole.py'
29336adding 'chimerax_mole-1.0.dist-info/METADATA'
29337adding 'chimerax_mole-1.0.dist-info/WHEEL'
29338adding 'chimerax_mole-1.0.dist-info/top_level.txt'
29339adding 'chimerax_mole-1.0.dist-info/RECORD'
29340removing build\bdist.win-amd64\wheel
29341Distribution is in .\dist\ChimeraX_Mole-1.0-py3-none-any.whl
29342INFO:
29343
29344make sync
29345make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
29346cp -av dist/*.whl ../../../build/sync
29347'dist/chimerax_mole-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_mole-1.0-py3-none-any.whl'
29348make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
29349make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mole'
29350make -C morph build
29351make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
29352if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29353 echo "missing ChimeraX application's python"; exit 1; \
29354else \
29355 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29356fi
29357INFO:
29358Executing: devel build . exit true
29359C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29360!!
29361
29362 ********************************************************************************
29363 Please consider removing the following classifiers in favor of a SPDX license expression:
29364
29365 License :: Free for non-commercial use
29366
29367 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29368 ********************************************************************************
29369
29370!!
29371 self._finalize_license_expression()
29372running build
29373running build_py
29374creating build\lib.win-amd64-cpython-311\chimerax\morph
29375copying src\hinge.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29376copying src\interpolate.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29377copying src\interp_residue.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29378copying src\morph.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29379copying src\morph_cpp.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29380copying src\motion.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29381copying src\segment.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29382copying src\sieve_fit.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29383copying src\util.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29384copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\morph
29385running build_ext
29386building 'chimerax.morph._morph' extension
29387creating build\temp.win-amd64-cpython-311\Release\_morph
29388"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_morph/morph.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_morph\morph.obj
29389morph.cpp
29390_morph/morph.cpp(165): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
29391_morph/morph.cpp(225): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
29392_morph/morph.cpp(290): warning C4244: 'initializing': conversion from 'int64_t' to 'long', possible loss of data
29393"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__morph build\temp.win-amd64-cpython-311\Release\_morph\morph.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\morph\_morph.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_morph\_morph.cp311-win_amd64.lib
29394 Creating library build\temp.win-amd64-cpython-311\Release\_morph\_morph.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_morph\_morph.cp311-win_amd64.exp
29395Generating code
29396Finished generating code
29397running bdist_wheel
29398installing to build\bdist.win-amd64\wheel
29399running install
29400running install_lib
29401running build_ext
29402creating build\bdist.win-amd64\wheel
29403creating build\bdist.win-amd64\wheel\chimerax
29404creating build\bdist.win-amd64\wheel\chimerax\morph
29405copying build\lib.win-amd64-cpython-311\chimerax\morph\hinge.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29406copying build\lib.win-amd64-cpython-311\chimerax\morph\interpolate.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29407copying build\lib.win-amd64-cpython-311\chimerax\morph\interp_residue.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29408copying build\lib.win-amd64-cpython-311\chimerax\morph\morph.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29409copying build\lib.win-amd64-cpython-311\chimerax\morph\morph_cpp.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29410copying build\lib.win-amd64-cpython-311\chimerax\morph\motion.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29411copying build\lib.win-amd64-cpython-311\chimerax\morph\segment.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29412copying build\lib.win-amd64-cpython-311\chimerax\morph\sieve_fit.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29413copying build\lib.win-amd64-cpython-311\chimerax\morph\util.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29414copying build\lib.win-amd64-cpython-311\chimerax\morph\_morph.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\morph
29415copying build\lib.win-amd64-cpython-311\chimerax\morph\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\morph
29416running install_egg_info
29417running egg_info
29418creating ChimeraX_Morph.egg-info
29419writing ChimeraX_Morph.egg-info\PKG-INFO
29420writing dependency_links to ChimeraX_Morph.egg-info\dependency_links.txt
29421writing requirements to ChimeraX_Morph.egg-info\requires.txt
29422writing top-level names to ChimeraX_Morph.egg-info\top_level.txt
29423writing manifest file 'ChimeraX_Morph.egg-info\SOURCES.txt'
29424reading manifest file 'ChimeraX_Morph.egg-info\SOURCES.txt'
29425writing manifest file 'ChimeraX_Morph.egg-info\SOURCES.txt'
29426Copying ChimeraX_Morph.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Morph-1.0.2-py3.11.egg-info
29427running install_scripts
29428C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
29429 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
29430creating build\bdist.win-amd64\wheel\chimerax_morph-1.0.2.dist-info\WHEEL
29431creating 'dist\chimerax_morph-1.0.2-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
29432adding 'chimerax/morph/__init__.py'
29433adding 'chimerax/morph/_morph.cp311-win_amd64.pyd'
29434adding 'chimerax/morph/hinge.py'
29435adding 'chimerax/morph/interp_residue.py'
29436adding 'chimerax/morph/interpolate.py'
29437adding 'chimerax/morph/morph.py'
29438adding 'chimerax/morph/morph_cpp.py'
29439adding 'chimerax/morph/motion.py'
29440adding 'chimerax/morph/segment.py'
29441adding 'chimerax/morph/sieve_fit.py'
29442adding 'chimerax/morph/util.py'
29443adding 'chimerax_morph-1.0.2.dist-info/METADATA'
29444adding 'chimerax_morph-1.0.2.dist-info/WHEEL'
29445adding 'chimerax_morph-1.0.2.dist-info/top_level.txt'
29446adding 'chimerax_morph-1.0.2.dist-info/RECORD'
29447removing build\bdist.win-amd64\wheel
29448Distribution is in .\dist\ChimeraX_Morph-1.0.2-cp311-cp311-win_amd64.whl
29449INFO:
29450
29451make sync
29452make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
29453cp -av dist/*.whl ../../../build/sync
29454'dist/chimerax_morph-1.0.2-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_morph-1.0.2-cp311-cp311-win_amd64.whl'
29455make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
29456make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/morph'
29457make -C mouse_modes build
29458make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
29459if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29460 echo "missing ChimeraX application's python"; exit 1; \
29461else \
29462 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29463fi
29464INFO:
29465Executing: devel build . exit true
29466C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29467!!
29468
29469 ********************************************************************************
29470 Please consider removing the following classifiers in favor of a SPDX license expression:
29471
29472 License :: Free for non-commercial use
29473
29474 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29475 ********************************************************************************
29476
29477!!
29478 self._finalize_license_expression()
29479running build
29480running build_py
29481creating build\lib\chimerax\mouse_modes
29482copying src\cmd.py -> build\lib\chimerax\mouse_modes
29483copying src\mousemodes.py -> build\lib\chimerax\mouse_modes
29484copying src\settings.py -> build\lib\chimerax\mouse_modes
29485copying src\std_modes.py -> build\lib\chimerax\mouse_modes
29486copying src\tool.py -> build\lib\chimerax\mouse_modes
29487copying src\trackpad.py -> build\lib\chimerax\mouse_modes
29488copying src\__init__.py -> build\lib\chimerax\mouse_modes
29489creating build\lib\chimerax\mouse_modes\icons
29490copying src\icons\clip.png -> build\lib\chimerax\mouse_modes\icons
29491copying src\icons\cliprot.png -> build\lib\chimerax\mouse_modes\icons
29492copying src\icons\cliprot_wht.png -> build\lib\chimerax\mouse_modes\icons
29493copying src\icons\clip_wht.png -> build\lib\chimerax\mouse_modes\icons
29494copying src\icons\move_atoms.png -> build\lib\chimerax\mouse_modes\icons
29495copying src\icons\move_h2o.png -> build\lib\chimerax\mouse_modes\icons
29496copying src\icons\move_picked_model.png -> build\lib\chimerax\mouse_modes\icons
29497copying src\icons\pivot.png -> build\lib\chimerax\mouse_modes\icons
29498copying src\icons\rotate.png -> build\lib\chimerax\mouse_modes\icons
29499copying src\icons\rotatesel.png -> build\lib\chimerax\mouse_modes\icons
29500copying src\icons\rotate_atoms.png -> build\lib\chimerax\mouse_modes\icons
29501copying src\icons\rotate_h2o.png -> build\lib\chimerax\mouse_modes\icons
29502copying src\icons\select.png -> build\lib\chimerax\mouse_modes\icons
29503copying src\icons\translate.png -> build\lib\chimerax\mouse_modes\icons
29504copying src\icons\zoom.png -> build\lib\chimerax\mouse_modes\icons
29505running bdist_wheel
29506installing to build\bdist.win-amd64\wheel
29507running install
29508running install_lib
29509creating build\bdist.win-amd64\wheel
29510creating build\bdist.win-amd64\wheel\chimerax
29511creating build\bdist.win-amd64\wheel\chimerax\mouse_modes
29512copying build\lib\chimerax\mouse_modes\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes
29513creating build\bdist.win-amd64\wheel\chimerax\mouse_modes\icons
29514copying build\lib\chimerax\mouse_modes\icons\clip.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29515copying build\lib\chimerax\mouse_modes\icons\cliprot.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29516copying build\lib\chimerax\mouse_modes\icons\cliprot_wht.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29517copying build\lib\chimerax\mouse_modes\icons\clip_wht.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29518copying build\lib\chimerax\mouse_modes\icons\move_atoms.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29519copying build\lib\chimerax\mouse_modes\icons\move_h2o.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29520copying build\lib\chimerax\mouse_modes\icons\move_picked_model.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29521copying build\lib\chimerax\mouse_modes\icons\pivot.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29522copying build\lib\chimerax\mouse_modes\icons\rotate.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29523copying build\lib\chimerax\mouse_modes\icons\rotatesel.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29524copying build\lib\chimerax\mouse_modes\icons\rotate_atoms.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29525copying build\lib\chimerax\mouse_modes\icons\rotate_h2o.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29526copying build\lib\chimerax\mouse_modes\icons\select.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29527copying build\lib\chimerax\mouse_modes\icons\translate.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29528copying build\lib\chimerax\mouse_modes\icons\zoom.png -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes\icons
29529copying build\lib\chimerax\mouse_modes\mousemodes.py -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes
29530copying build\lib\chimerax\mouse_modes\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes
29531copying build\lib\chimerax\mouse_modes\std_modes.py -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes
29532copying build\lib\chimerax\mouse_modes\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes
29533copying build\lib\chimerax\mouse_modes\trackpad.py -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes
29534copying build\lib\chimerax\mouse_modes\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mouse_modes
29535running install_egg_info
29536running egg_info
29537creating ChimeraX_MouseModes.egg-info
29538writing ChimeraX_MouseModes.egg-info\PKG-INFO
29539writing dependency_links to ChimeraX_MouseModes.egg-info\dependency_links.txt
29540writing requirements to ChimeraX_MouseModes.egg-info\requires.txt
29541writing top-level names to ChimeraX_MouseModes.egg-info\top_level.txt
29542writing manifest file 'ChimeraX_MouseModes.egg-info\SOURCES.txt'
29543reading manifest file 'ChimeraX_MouseModes.egg-info\SOURCES.txt'
29544writing manifest file 'ChimeraX_MouseModes.egg-info\SOURCES.txt'
29545Copying ChimeraX_MouseModes.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MouseModes-1.2-py3.11.egg-info
29546running install_scripts
29547creating build\bdist.win-amd64\wheel\chimerax_mousemodes-1.2.dist-info\WHEEL
29548creating 'dist\chimerax_mousemodes-1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29549adding 'chimerax/mouse_modes/__init__.py'
29550adding 'chimerax/mouse_modes/cmd.py'
29551adding 'chimerax/mouse_modes/mousemodes.py'
29552adding 'chimerax/mouse_modes/settings.py'
29553adding 'chimerax/mouse_modes/std_modes.py'
29554adding 'chimerax/mouse_modes/tool.py'
29555adding 'chimerax/mouse_modes/trackpad.py'
29556adding 'chimerax/mouse_modes/icons/clip.png'
29557adding 'chimerax/mouse_modes/icons/clip_wht.png'
29558adding 'chimerax/mouse_modes/icons/cliprot.png'
29559adding 'chimerax/mouse_modes/icons/cliprot_wht.png'
29560adding 'chimerax/mouse_modes/icons/move_atoms.png'
29561adding 'chimerax/mouse_modes/icons/move_h2o.png'
29562adding 'chimerax/mouse_modes/icons/move_picked_model.png'
29563adding 'chimerax/mouse_modes/icons/pivot.png'
29564adding 'chimerax/mouse_modes/icons/rotate.png'
29565adding 'chimerax/mouse_modes/icons/rotate_atoms.png'
29566adding 'chimerax/mouse_modes/icons/rotate_h2o.png'
29567adding 'chimerax/mouse_modes/icons/rotatesel.png'
29568adding 'chimerax/mouse_modes/icons/select.png'
29569adding 'chimerax/mouse_modes/icons/translate.png'
29570adding 'chimerax/mouse_modes/icons/zoom.png'
29571adding 'chimerax_mousemodes-1.2.dist-info/METADATA'
29572adding 'chimerax_mousemodes-1.2.dist-info/WHEEL'
29573adding 'chimerax_mousemodes-1.2.dist-info/top_level.txt'
29574adding 'chimerax_mousemodes-1.2.dist-info/RECORD'
29575removing build\bdist.win-amd64\wheel
29576Distribution is in .\dist\ChimeraX_MouseModes-1.2-py3-none-any.whl
29577INFO:
29578
29579make sync
29580make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
29581cp -av dist/*.whl ../../../build/sync
29582'dist/chimerax_mousemodes-1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_mousemodes-1.2-py3-none-any.whl'
29583make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
29584make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mouse_modes'
29585make -C movie build
29586make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
29587if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29588 echo "missing ChimeraX application's python"; exit 1; \
29589else \
29590 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29591fi
29592INFO:
29593Executing: devel build . exit true
29594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29595!!
29596
29597 ********************************************************************************
29598 Please consider removing the following classifiers in favor of a SPDX license expression:
29599
29600 License :: Free for non-commercial use
29601
29602 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29603 ********************************************************************************
29604
29605!!
29606 self._finalize_license_expression()
29607running build
29608running build_py
29609creating build\lib\chimerax\movie
29610copying src\encode.py -> build\lib\chimerax\movie
29611copying src\formats.py -> build\lib\chimerax\movie
29612copying src\movie.py -> build\lib\chimerax\movie
29613copying src\moviecmd.py -> build\lib\chimerax\movie
29614copying src\__init__.py -> build\lib\chimerax\movie
29615running bdist_wheel
29616installing to build\bdist.win-amd64\wheel
29617running install
29618running install_lib
29619creating build\bdist.win-amd64\wheel
29620creating build\bdist.win-amd64\wheel\chimerax
29621creating build\bdist.win-amd64\wheel\chimerax\movie
29622copying build\lib\chimerax\movie\encode.py -> build\bdist.win-amd64\wheel\.\chimerax\movie
29623copying build\lib\chimerax\movie\formats.py -> build\bdist.win-amd64\wheel\.\chimerax\movie
29624copying build\lib\chimerax\movie\movie.py -> build\bdist.win-amd64\wheel\.\chimerax\movie
29625copying build\lib\chimerax\movie\moviecmd.py -> build\bdist.win-amd64\wheel\.\chimerax\movie
29626copying build\lib\chimerax\movie\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\movie
29627running install_egg_info
29628running egg_info
29629creating ChimeraX_Movie.egg-info
29630writing ChimeraX_Movie.egg-info\PKG-INFO
29631writing dependency_links to ChimeraX_Movie.egg-info\dependency_links.txt
29632writing requirements to ChimeraX_Movie.egg-info\requires.txt
29633writing top-level names to ChimeraX_Movie.egg-info\top_level.txt
29634writing manifest file 'ChimeraX_Movie.egg-info\SOURCES.txt'
29635reading manifest file 'ChimeraX_Movie.egg-info\SOURCES.txt'
29636writing manifest file 'ChimeraX_Movie.egg-info\SOURCES.txt'
29637Copying ChimeraX_Movie.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Movie-1.0.1-py3.11.egg-info
29638running install_scripts
29639creating build\bdist.win-amd64\wheel\chimerax_movie-1.0.1.dist-info\WHEEL
29640creating 'dist\chimerax_movie-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29641adding 'chimerax/movie/__init__.py'
29642adding 'chimerax/movie/encode.py'
29643adding 'chimerax/movie/formats.py'
29644adding 'chimerax/movie/movie.py'
29645adding 'chimerax/movie/moviecmd.py'
29646adding 'chimerax_movie-1.0.1.dist-info/METADATA'
29647adding 'chimerax_movie-1.0.1.dist-info/WHEEL'
29648adding 'chimerax_movie-1.0.1.dist-info/top_level.txt'
29649adding 'chimerax_movie-1.0.1.dist-info/RECORD'
29650removing build\bdist.win-amd64\wheel
29651Distribution is in .\dist\ChimeraX_Movie-1.0.1-py3-none-any.whl
29652INFO:
29653
29654make sync
29655make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
29656cp -av dist/*.whl ../../../build/sync
29657'dist/chimerax_movie-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_movie-1.0.1-py3-none-any.whl'
29658make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
29659make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/movie'
29660make -C mutation_scores build
29661make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
29662if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29663 echo "missing ChimeraX application's python"; exit 1; \
29664else \
29665 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29666fi
29667INFO:
29668Executing: devel build . exit true
29669C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29670!!
29671
29672 ********************************************************************************
29673 Please consider removing the following classifiers in favor of a SPDX license expression:
29674
29675 License :: Free for non-commercial use
29676
29677 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29678 ********************************************************************************
29679
29680!!
29681 self._finalize_license_expression()
29682running build
29683running build_py
29684creating build\lib\chimerax\mutation_scores
29685copying src\alpha_missense.py -> build\lib\chimerax\mutation_scores
29686copying src\ms_csv_file.py -> build\lib\chimerax\mutation_scores
29687copying src\ms_data.py -> build\lib\chimerax\mutation_scores
29688copying src\ms_define.py -> build\lib\chimerax\mutation_scores
29689copying src\ms_histogram.py -> build\lib\chimerax\mutation_scores
29690copying src\ms_label.py -> build\lib\chimerax\mutation_scores
29691copying src\ms_scatter_plot.py -> build\lib\chimerax\mutation_scores
29692copying src\ms_stats.py -> build\lib\chimerax\mutation_scores
29693copying src\ms_umap.py -> build\lib\chimerax\mutation_scores
29694copying src\uniprot_variants.py -> build\lib\chimerax\mutation_scores
29695copying src\__init__.py -> build\lib\chimerax\mutation_scores
29696running bdist_wheel
29697installing to build\bdist.win-amd64\wheel
29698running install
29699running install_lib
29700creating build\bdist.win-amd64\wheel
29701creating build\bdist.win-amd64\wheel\chimerax
29702creating build\bdist.win-amd64\wheel\chimerax\mutation_scores
29703copying build\lib\chimerax\mutation_scores\alpha_missense.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29704copying build\lib\chimerax\mutation_scores\ms_csv_file.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29705copying build\lib\chimerax\mutation_scores\ms_data.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29706copying build\lib\chimerax\mutation_scores\ms_define.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29707copying build\lib\chimerax\mutation_scores\ms_histogram.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29708copying build\lib\chimerax\mutation_scores\ms_label.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29709copying build\lib\chimerax\mutation_scores\ms_scatter_plot.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29710copying build\lib\chimerax\mutation_scores\ms_stats.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29711copying build\lib\chimerax\mutation_scores\ms_umap.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29712copying build\lib\chimerax\mutation_scores\uniprot_variants.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29713copying build\lib\chimerax\mutation_scores\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\mutation_scores
29714running install_egg_info
29715running egg_info
29716creating ChimeraX_MutationScores.egg-info
29717writing ChimeraX_MutationScores.egg-info\PKG-INFO
29718writing dependency_links to ChimeraX_MutationScores.egg-info\dependency_links.txt
29719writing requirements to ChimeraX_MutationScores.egg-info\requires.txt
29720writing top-level names to ChimeraX_MutationScores.egg-info\top_level.txt
29721writing manifest file 'ChimeraX_MutationScores.egg-info\SOURCES.txt'
29722reading manifest file 'ChimeraX_MutationScores.egg-info\SOURCES.txt'
29723writing manifest file 'ChimeraX_MutationScores.egg-info\SOURCES.txt'
29724Copying ChimeraX_MutationScores.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_MutationScores-1.0-py3.11.egg-info
29725running install_scripts
29726creating build\bdist.win-amd64\wheel\chimerax_mutationscores-1.0.dist-info\WHEEL
29727creating 'dist\chimerax_mutationscores-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29728adding 'chimerax/mutation_scores/__init__.py'
29729adding 'chimerax/mutation_scores/alpha_missense.py'
29730adding 'chimerax/mutation_scores/ms_csv_file.py'
29731adding 'chimerax/mutation_scores/ms_data.py'
29732adding 'chimerax/mutation_scores/ms_define.py'
29733adding 'chimerax/mutation_scores/ms_histogram.py'
29734adding 'chimerax/mutation_scores/ms_label.py'
29735adding 'chimerax/mutation_scores/ms_scatter_plot.py'
29736adding 'chimerax/mutation_scores/ms_stats.py'
29737adding 'chimerax/mutation_scores/ms_umap.py'
29738adding 'chimerax/mutation_scores/uniprot_variants.py'
29739adding 'chimerax_mutationscores-1.0.dist-info/METADATA'
29740adding 'chimerax_mutationscores-1.0.dist-info/WHEEL'
29741adding 'chimerax_mutationscores-1.0.dist-info/top_level.txt'
29742adding 'chimerax_mutationscores-1.0.dist-info/RECORD'
29743removing build\bdist.win-amd64\wheel
29744Distribution is in .\dist\ChimeraX_MutationScores-1.0-py3-none-any.whl
29745INFO:
29746
29747make sync
29748make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
29749cp -av dist/*.whl ../../../build/sync
29750'dist/chimerax_mutationscores-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_mutationscores-1.0-py3-none-any.whl'
29751make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
29752make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/mutation_scores'
29753make -C nmrstar build
29754make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
29755if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29756 echo "missing ChimeraX application's python"; exit 1; \
29757else \
29758 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29759fi
29760INFO:
29761Executing: devel build . exit true
29762C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29763!!
29764
29765 ********************************************************************************
29766 Please consider removing the following classifiers in favor of a SPDX license expression:
29767
29768 License :: Free for non-commercial use
29769
29770 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29771 ********************************************************************************
29772
29773!!
29774 self._finalize_license_expression()
29775running build
29776running build_py
29777creating build\lib\chimerax\nmrstar
29778copying src\nmrstar.py -> build\lib\chimerax\nmrstar
29779copying src\nmr_selectors.py -> build\lib\chimerax\nmrstar
29780copying src\__init__.py -> build\lib\chimerax\nmrstar
29781running bdist_wheel
29782installing to build\bdist.win-amd64\wheel
29783running install
29784running install_lib
29785creating build\bdist.win-amd64\wheel
29786creating build\bdist.win-amd64\wheel\chimerax
29787creating build\bdist.win-amd64\wheel\chimerax\nmrstar
29788copying build\lib\chimerax\nmrstar\nmrstar.py -> build\bdist.win-amd64\wheel\.\chimerax\nmrstar
29789copying build\lib\chimerax\nmrstar\nmr_selectors.py -> build\bdist.win-amd64\wheel\.\chimerax\nmrstar
29790copying build\lib\chimerax\nmrstar\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\nmrstar
29791running install_egg_info
29792running egg_info
29793creating ChimeraX_NMRSTAR.egg-info
29794writing ChimeraX_NMRSTAR.egg-info\PKG-INFO
29795writing dependency_links to ChimeraX_NMRSTAR.egg-info\dependency_links.txt
29796writing requirements to ChimeraX_NMRSTAR.egg-info\requires.txt
29797writing top-level names to ChimeraX_NMRSTAR.egg-info\top_level.txt
29798writing manifest file 'ChimeraX_NMRSTAR.egg-info\SOURCES.txt'
29799reading manifest file 'ChimeraX_NMRSTAR.egg-info\SOURCES.txt'
29800writing manifest file 'ChimeraX_NMRSTAR.egg-info\SOURCES.txt'
29801Copying ChimeraX_NMRSTAR.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_NMRSTAR-1.0.2-py3.11.egg-info
29802running install_scripts
29803creating build\bdist.win-amd64\wheel\chimerax_nmrstar-1.0.2.dist-info\WHEEL
29804creating 'dist\chimerax_nmrstar-1.0.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29805adding 'chimerax/nmrstar/__init__.py'
29806adding 'chimerax/nmrstar/nmr_selectors.py'
29807adding 'chimerax/nmrstar/nmrstar.py'
29808adding 'chimerax_nmrstar-1.0.2.dist-info/METADATA'
29809adding 'chimerax_nmrstar-1.0.2.dist-info/WHEEL'
29810adding 'chimerax_nmrstar-1.0.2.dist-info/top_level.txt'
29811adding 'chimerax_nmrstar-1.0.2.dist-info/RECORD'
29812removing build\bdist.win-amd64\wheel
29813Distribution is in .\dist\ChimeraX_NMRSTAR-1.0.2-py3-none-any.whl
29814INFO:
29815
29816make sync
29817make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
29818cp -av dist/*.whl ../../../build/sync
29819'dist/chimerax_nmrstar-1.0.2-py3-none-any.whl' -> '../../../build/sync/chimerax_nmrstar-1.0.2-py3-none-any.whl'
29820make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
29821make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nmrstar'
29822make -C neuron build
29823make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
29824if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29825 echo "missing ChimeraX application's python"; exit 1; \
29826else \
29827 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29828fi
29829INFO:
29830Executing: devel build . exit true
29831C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
29832!!
29833
29834 ********************************************************************************
29835 Please consider removing the following classifiers in favor of a SPDX license expression:
29836
29837 License :: Free for non-commercial use
29838
29839 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29840 ********************************************************************************
29841
29842!!
29843 self._finalize_license_expression()
29844running build
29845running build_py
29846creating build\lib\chimerax\neuron
29847copying src\readswc.py -> build\lib\chimerax\neuron
29848copying src\__init__.py -> build\lib\chimerax\neuron
29849running bdist_wheel
29850installing to build\bdist.win-amd64\wheel
29851running install
29852running install_lib
29853creating build\bdist.win-amd64\wheel
29854creating build\bdist.win-amd64\wheel\chimerax
29855creating build\bdist.win-amd64\wheel\chimerax\neuron
29856copying build\lib\chimerax\neuron\readswc.py -> build\bdist.win-amd64\wheel\.\chimerax\neuron
29857copying build\lib\chimerax\neuron\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\neuron
29858running install_egg_info
29859running egg_info
29860creating ChimeraX_Neuron.egg-info
29861writing ChimeraX_Neuron.egg-info\PKG-INFO
29862writing dependency_links to ChimeraX_Neuron.egg-info\dependency_links.txt
29863writing requirements to ChimeraX_Neuron.egg-info\requires.txt
29864writing top-level names to ChimeraX_Neuron.egg-info\top_level.txt
29865writing manifest file 'ChimeraX_Neuron.egg-info\SOURCES.txt'
29866reading manifest file 'ChimeraX_Neuron.egg-info\SOURCES.txt'
29867writing manifest file 'ChimeraX_Neuron.egg-info\SOURCES.txt'
29868Copying ChimeraX_Neuron.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Neuron-1.0-py3.11.egg-info
29869running install_scripts
29870creating build\bdist.win-amd64\wheel\chimerax_neuron-1.0.dist-info\WHEEL
29871creating 'dist\chimerax_neuron-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29872adding 'chimerax/neuron/__init__.py'
29873adding 'chimerax/neuron/readswc.py'
29874adding 'chimerax_neuron-1.0.dist-info/METADATA'
29875adding 'chimerax_neuron-1.0.dist-info/WHEEL'
29876adding 'chimerax_neuron-1.0.dist-info/top_level.txt'
29877adding 'chimerax_neuron-1.0.dist-info/RECORD'
29878removing build\bdist.win-amd64\wheel
29879Distribution is in .\dist\ChimeraX_Neuron-1.0-py3-none-any.whl
29880INFO:
29881
29882make sync
29883make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
29884cp -av dist/*.whl ../../../build/sync
29885'dist/chimerax_neuron-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_neuron-1.0-py3-none-any.whl'
29886make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
29887make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/neuron'
29888make -C nifti build
29889make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
29890if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29891 echo "missing ChimeraX application's python"; exit 1; \
29892else \
29893 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29894fi
29895INFO:
29896Executing: devel build . exit true
29897C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
29898!!
29899
29900 ********************************************************************************
29901 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
29902
29903 By 2026-Feb-18, you need to update your project and remove deprecated calls
29904 or your builds will no longer be supported.
29905
29906 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29907 ********************************************************************************
29908
29909!!
29910 corresp(dist, value, root_dir)
29911running build
29912running build_py
29913creating build\lib\chimerax\nifti
29914copying src\nifti.py -> build\lib\chimerax\nifti
29915copying src\__init__.py -> build\lib\chimerax\nifti
29916running bdist_wheel
29917installing to build\bdist.win-amd64\wheel
29918running install
29919running install_lib
29920creating build\bdist.win-amd64\wheel
29921creating build\bdist.win-amd64\wheel\chimerax
29922creating build\bdist.win-amd64\wheel\chimerax\nifti
29923copying build\lib\chimerax\nifti\nifti.py -> build\bdist.win-amd64\wheel\.\chimerax\nifti
29924copying build\lib\chimerax\nifti\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\nifti
29925running install_egg_info
29926running egg_info
29927creating ChimeraX_Nifti.egg-info
29928writing ChimeraX_Nifti.egg-info\PKG-INFO
29929writing dependency_links to ChimeraX_Nifti.egg-info\dependency_links.txt
29930writing requirements to ChimeraX_Nifti.egg-info\requires.txt
29931writing top-level names to ChimeraX_Nifti.egg-info\top_level.txt
29932writing manifest file 'ChimeraX_Nifti.egg-info\SOURCES.txt'
29933reading manifest file 'ChimeraX_Nifti.egg-info\SOURCES.txt'
29934writing manifest file 'ChimeraX_Nifti.egg-info\SOURCES.txt'
29935Copying ChimeraX_Nifti.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Nifti-1.2-py3.11.egg-info
29936running install_scripts
29937creating build\bdist.win-amd64\wheel\chimerax_nifti-1.2.dist-info\WHEEL
29938creating 'dist\chimerax_nifti-1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
29939adding 'chimerax/nifti/__init__.py'
29940adding 'chimerax/nifti/nifti.py'
29941adding 'chimerax_nifti-1.2.dist-info/METADATA'
29942adding 'chimerax_nifti-1.2.dist-info/WHEEL'
29943adding 'chimerax_nifti-1.2.dist-info/top_level.txt'
29944adding 'chimerax_nifti-1.2.dist-info/RECORD'
29945removing build\bdist.win-amd64\wheel
29946Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\nifti\dist\chimerax_nifti-1.2-py3-none-any.whl
29947INFO:
29948
29949make sync
29950make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
29951cp -av dist/*.whl ../../../build/sync
29952'dist/chimerax_nifti-1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_nifti-1.2-py3-none-any.whl'
29953make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
29954make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nifti'
29955make -C nrrd build
29956make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
29957if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
29958 echo "missing ChimeraX application's python"; exit 1; \
29959else \
29960 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
29961fi
29962INFO:
29963Executing: devel build . exit true
29964C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
29965!!
29966
29967 ********************************************************************************
29968 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
29969
29970 By 2026-Feb-18, you need to update your project and remove deprecated calls
29971 or your builds will no longer be supported.
29972
29973 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
29974 ********************************************************************************
29975
29976!!
29977 corresp(dist, value, root_dir)
29978running build
29979running build_py
29980creating build\lib\chimerax\nrrd
29981copying src\nrrd.py -> build\lib\chimerax\nrrd
29982copying src\__init__.py -> build\lib\chimerax\nrrd
29983running bdist_wheel
29984installing to build\bdist.win-amd64\wheel
29985running install
29986running install_lib
29987creating build\bdist.win-amd64\wheel
29988creating build\bdist.win-amd64\wheel\chimerax
29989creating build\bdist.win-amd64\wheel\chimerax\nrrd
29990copying build\lib\chimerax\nrrd\nrrd.py -> build\bdist.win-amd64\wheel\.\chimerax\nrrd
29991copying build\lib\chimerax\nrrd\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\nrrd
29992running install_egg_info
29993running egg_info
29994creating ChimeraX_NRRD.egg-info
29995writing ChimeraX_NRRD.egg-info\PKG-INFO
29996writing dependency_links to ChimeraX_NRRD.egg-info\dependency_links.txt
29997writing requirements to ChimeraX_NRRD.egg-info\requires.txt
29998writing top-level names to ChimeraX_NRRD.egg-info\top_level.txt
29999writing manifest file 'ChimeraX_NRRD.egg-info\SOURCES.txt'
30000reading manifest file 'ChimeraX_NRRD.egg-info\SOURCES.txt'
30001writing manifest file 'ChimeraX_NRRD.egg-info\SOURCES.txt'
30002Copying ChimeraX_NRRD.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_NRRD-1.2-py3.11.egg-info
30003running install_scripts
30004creating build\bdist.win-amd64\wheel\chimerax_nrrd-1.2.dist-info\WHEEL
30005creating 'dist\chimerax_nrrd-1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
30006adding 'chimerax/nrrd/__init__.py'
30007adding 'chimerax/nrrd/nrrd.py'
30008adding 'chimerax_nrrd-1.2.dist-info/METADATA'
30009adding 'chimerax_nrrd-1.2.dist-info/WHEEL'
30010adding 'chimerax_nrrd-1.2.dist-info/top_level.txt'
30011adding 'chimerax_nrrd-1.2.dist-info/RECORD'
30012removing build\bdist.win-amd64\wheel
30013Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\nrrd\dist\chimerax_nrrd-1.2-py3-none-any.whl
30014INFO:
30015
30016make sync
30017make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
30018cp -av dist/*.whl ../../../build/sync
30019'dist/chimerax_nrrd-1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_nrrd-1.2-py3-none-any.whl'
30020make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
30021make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nrrd'
30022make -C nucleotides build
30023make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
30024if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30025 echo "missing ChimeraX application's python"; exit 1; \
30026else \
30027 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30028fi
30029INFO:
30030Executing: devel build . exit true
30031C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30032!!
30033
30034 ********************************************************************************
30035 Please consider removing the following classifiers in favor of a SPDX license expression:
30036
30037 License :: Free for non-commercial use
30038
30039 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30040 ********************************************************************************
30041
30042!!
30043 self._finalize_license_expression()
30044running build
30045running build_py
30046creating build\lib\chimerax\nucleotides
30047copying src\cmd.py -> build\lib\chimerax\nucleotides
30048copying src\default.py -> build\lib\chimerax\nucleotides
30049copying src\_data.py -> build\lib\chimerax\nucleotides
30050copying src\__init__.py -> build\lib\chimerax\nucleotides
30051creating build\lib\chimerax\nucleotides\icons
30052copying src\icons\nuc-atoms.png -> build\lib\chimerax\nucleotides\icons
30053copying src\icons\nuc-box.png -> build\lib\chimerax\nucleotides\icons
30054copying src\icons\nuc-color.png -> build\lib\chimerax\nucleotides\icons
30055copying src\icons\nuc-elli.png -> build\lib\chimerax\nucleotides\icons
30056copying src\icons\nuc-fill.png -> build\lib\chimerax\nucleotides\icons
30057copying src\icons\nuc-ladder.png -> build\lib\chimerax\nucleotides\icons
30058copying src\icons\nuc-muff.png -> build\lib\chimerax\nucleotides\icons
30059copying src\icons\nuc-slab.png -> build\lib\chimerax\nucleotides\icons
30060copying src\icons\nuc-stubs.png -> build\lib\chimerax\nucleotides\icons
30061copying src\icons\nuc-tube.png -> build\lib\chimerax\nucleotides\icons
30062running bdist_wheel
30063installing to build\bdist.win-amd64\wheel
30064running install
30065running install_lib
30066creating build\bdist.win-amd64\wheel
30067creating build\bdist.win-amd64\wheel\chimerax
30068creating build\bdist.win-amd64\wheel\chimerax\nucleotides
30069copying build\lib\chimerax\nucleotides\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides
30070copying build\lib\chimerax\nucleotides\default.py -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides
30071creating build\bdist.win-amd64\wheel\chimerax\nucleotides\icons
30072copying build\lib\chimerax\nucleotides\icons\nuc-atoms.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30073copying build\lib\chimerax\nucleotides\icons\nuc-box.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30074copying build\lib\chimerax\nucleotides\icons\nuc-color.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30075copying build\lib\chimerax\nucleotides\icons\nuc-elli.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30076copying build\lib\chimerax\nucleotides\icons\nuc-fill.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30077copying build\lib\chimerax\nucleotides\icons\nuc-ladder.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30078copying build\lib\chimerax\nucleotides\icons\nuc-muff.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30079copying build\lib\chimerax\nucleotides\icons\nuc-slab.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30080copying build\lib\chimerax\nucleotides\icons\nuc-stubs.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30081copying build\lib\chimerax\nucleotides\icons\nuc-tube.png -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides\icons
30082copying build\lib\chimerax\nucleotides\_data.py -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides
30083copying build\lib\chimerax\nucleotides\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\nucleotides
30084running install_egg_info
30085running egg_info
30086creating ChimeraX_Nucleotides.egg-info
30087writing ChimeraX_Nucleotides.egg-info\PKG-INFO
30088writing dependency_links to ChimeraX_Nucleotides.egg-info\dependency_links.txt
30089writing requirements to ChimeraX_Nucleotides.egg-info\requires.txt
30090writing top-level names to ChimeraX_Nucleotides.egg-info\top_level.txt
30091writing manifest file 'ChimeraX_Nucleotides.egg-info\SOURCES.txt'
30092reading manifest file 'ChimeraX_Nucleotides.egg-info\SOURCES.txt'
30093writing manifest file 'ChimeraX_Nucleotides.egg-info\SOURCES.txt'
30094Copying ChimeraX_Nucleotides.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Nucleotides-2.0.3-py3.11.egg-info
30095running install_scripts
30096creating build\bdist.win-amd64\wheel\chimerax_nucleotides-2.0.3.dist-info\WHEEL
30097creating 'dist\chimerax_nucleotides-2.0.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
30098adding 'chimerax/nucleotides/__init__.py'
30099adding 'chimerax/nucleotides/_data.py'
30100adding 'chimerax/nucleotides/cmd.py'
30101adding 'chimerax/nucleotides/default.py'
30102adding 'chimerax/nucleotides/icons/nuc-atoms.png'
30103adding 'chimerax/nucleotides/icons/nuc-box.png'
30104adding 'chimerax/nucleotides/icons/nuc-color.png'
30105adding 'chimerax/nucleotides/icons/nuc-elli.png'
30106adding 'chimerax/nucleotides/icons/nuc-fill.png'
30107adding 'chimerax/nucleotides/icons/nuc-ladder.png'
30108adding 'chimerax/nucleotides/icons/nuc-muff.png'
30109adding 'chimerax/nucleotides/icons/nuc-slab.png'
30110adding 'chimerax/nucleotides/icons/nuc-stubs.png'
30111adding 'chimerax/nucleotides/icons/nuc-tube.png'
30112adding 'chimerax_nucleotides-2.0.3.dist-info/METADATA'
30113adding 'chimerax_nucleotides-2.0.3.dist-info/WHEEL'
30114adding 'chimerax_nucleotides-2.0.3.dist-info/top_level.txt'
30115adding 'chimerax_nucleotides-2.0.3.dist-info/RECORD'
30116removing build\bdist.win-amd64\wheel
30117Distribution is in .\dist\ChimeraX_Nucleotides-2.0.3-py3-none-any.whl
30118INFO:
30119
30120make sync
30121make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
30122cp -av dist/*.whl ../../../build/sync
30123'dist/chimerax_nucleotides-2.0.3-py3-none-any.whl' -> '../../../build/sync/chimerax_nucleotides-2.0.3-py3-none-any.whl'
30124make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
30125make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/nucleotides'
30126make -C open_command build
30127make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
30128if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30129 echo "missing ChimeraX application's python"; exit 1; \
30130else \
30131 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30132fi
30133INFO:
30134Executing: devel build . exit true
30135C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30136!!
30137
30138 ********************************************************************************
30139 Please consider removing the following classifiers in favor of a SPDX license expression:
30140
30141 License :: Free for non-commercial use
30142
30143 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30144 ********************************************************************************
30145
30146!!
30147 self._finalize_license_expression()
30148running build
30149running build_py
30150creating build\lib\chimerax\open_command
30151copying src\cmd.py -> build\lib\chimerax\open_command
30152copying src\dialog.py -> build\lib\chimerax\open_command
30153copying src\manager.py -> build\lib\chimerax\open_command
30154copying src\__init__.py -> build\lib\chimerax\open_command
30155running bdist_wheel
30156installing to build\bdist.win-amd64\wheel
30157running install
30158running install_lib
30159creating build\bdist.win-amd64\wheel
30160creating build\bdist.win-amd64\wheel\chimerax
30161creating build\bdist.win-amd64\wheel\chimerax\open_command
30162copying build\lib\chimerax\open_command\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\open_command
30163copying build\lib\chimerax\open_command\dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\open_command
30164copying build\lib\chimerax\open_command\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\open_command
30165copying build\lib\chimerax\open_command\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\open_command
30166running install_egg_info
30167running egg_info
30168creating ChimeraX_OpenCommand.egg-info
30169writing ChimeraX_OpenCommand.egg-info\PKG-INFO
30170writing dependency_links to ChimeraX_OpenCommand.egg-info\dependency_links.txt
30171writing requirements to ChimeraX_OpenCommand.egg-info\requires.txt
30172writing top-level names to ChimeraX_OpenCommand.egg-info\top_level.txt
30173writing manifest file 'ChimeraX_OpenCommand.egg-info\SOURCES.txt'
30174reading manifest file 'ChimeraX_OpenCommand.egg-info\SOURCES.txt'
30175writing manifest file 'ChimeraX_OpenCommand.egg-info\SOURCES.txt'
30176Copying ChimeraX_OpenCommand.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_OpenCommand-1.15.1-py3.11.egg-info
30177running install_scripts
30178creating build\bdist.win-amd64\wheel\chimerax_opencommand-1.15.1.dist-info\WHEEL
30179creating 'dist\chimerax_opencommand-1.15.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
30180adding 'chimerax/open_command/__init__.py'
30181adding 'chimerax/open_command/cmd.py'
30182adding 'chimerax/open_command/dialog.py'
30183adding 'chimerax/open_command/manager.py'
30184adding 'chimerax_opencommand-1.15.1.dist-info/METADATA'
30185adding 'chimerax_opencommand-1.15.1.dist-info/WHEEL'
30186adding 'chimerax_opencommand-1.15.1.dist-info/top_level.txt'
30187adding 'chimerax_opencommand-1.15.1.dist-info/RECORD'
30188removing build\bdist.win-amd64\wheel
30189Distribution is in .\dist\ChimeraX_OpenCommand-1.15.1-py3-none-any.whl
30190INFO:
30191
30192make sync
30193make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
30194cp -av dist/*.whl ../../../build/sync
30195'dist/chimerax_opencommand-1.15.1-py3-none-any.whl' -> '../../../build/sync/chimerax_opencommand-1.15.1-py3-none-any.whl'
30196make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
30197make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/open_command'
30198make -C orthopick build
30199make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
30200if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30201 echo "missing ChimeraX application's python"; exit 1; \
30202else \
30203 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30204fi
30205INFO:
30206Executing: devel build . exit true
30207C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30208!!
30209
30210 ********************************************************************************
30211 Please consider removing the following classifiers in favor of a SPDX license expression:
30212
30213 License :: Free for non-commercial use
30214
30215 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30216 ********************************************************************************
30217
30218!!
30219 self._finalize_license_expression()
30220running build
30221running build_py
30222creating build\lib\chimerax\orthopick
30223copying src\orthopick.py -> build\lib\chimerax\orthopick
30224copying src\__init__.py -> build\lib\chimerax\orthopick
30225creating build\lib\chimerax\orthopick\icons
30226copying src\icons\orthopick.png -> build\lib\chimerax\orthopick\icons
30227running bdist_wheel
30228installing to build\bdist.win-amd64\wheel
30229running install
30230running install_lib
30231creating build\bdist.win-amd64\wheel
30232creating build\bdist.win-amd64\wheel\chimerax
30233creating build\bdist.win-amd64\wheel\chimerax\orthopick
30234creating build\bdist.win-amd64\wheel\chimerax\orthopick\icons
30235copying build\lib\chimerax\orthopick\icons\orthopick.png -> build\bdist.win-amd64\wheel\.\chimerax\orthopick\icons
30236copying build\lib\chimerax\orthopick\orthopick.py -> build\bdist.win-amd64\wheel\.\chimerax\orthopick
30237copying build\lib\chimerax\orthopick\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\orthopick
30238running install_egg_info
30239running egg_info
30240creating ChimeraX_OrthoPick.egg-info
30241writing ChimeraX_OrthoPick.egg-info\PKG-INFO
30242writing dependency_links to ChimeraX_OrthoPick.egg-info\dependency_links.txt
30243writing requirements to ChimeraX_OrthoPick.egg-info\requires.txt
30244writing top-level names to ChimeraX_OrthoPick.egg-info\top_level.txt
30245writing manifest file 'ChimeraX_OrthoPick.egg-info\SOURCES.txt'
30246reading manifest file 'ChimeraX_OrthoPick.egg-info\SOURCES.txt'
30247writing manifest file 'ChimeraX_OrthoPick.egg-info\SOURCES.txt'
30248Copying ChimeraX_OrthoPick.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_OrthoPick-1.0.1-py3.11.egg-info
30249running install_scripts
30250creating build\bdist.win-amd64\wheel\chimerax_orthopick-1.0.1.dist-info\WHEEL
30251creating 'dist\chimerax_orthopick-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
30252adding 'chimerax/orthopick/__init__.py'
30253adding 'chimerax/orthopick/orthopick.py'
30254adding 'chimerax/orthopick/icons/orthopick.png'
30255adding 'chimerax_orthopick-1.0.1.dist-info/METADATA'
30256adding 'chimerax_orthopick-1.0.1.dist-info/WHEEL'
30257adding 'chimerax_orthopick-1.0.1.dist-info/top_level.txt'
30258adding 'chimerax_orthopick-1.0.1.dist-info/RECORD'
30259removing build\bdist.win-amd64\wheel
30260Distribution is in .\dist\ChimeraX_OrthoPick-1.0.1-py3-none-any.whl
30261INFO:
30262
30263make sync
30264make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
30265cp -av dist/*.whl ../../../build/sync
30266'dist/chimerax_orthopick-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_orthopick-1.0.1-py3-none-any.whl'
30267make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
30268make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/orthopick'
30269make -C pdb build
30270make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
30271if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30272 echo "missing ChimeraX application's python"; exit 1; \
30273else \
30274 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30275fi
30276INFO:
30277Executing: devel build . exit true
30278pdb.cpp
30279pdb_chars.cpp
30280pdb_cpp/pdb_chars.cpp(45): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30281pdb_read.cpp
30282pdb_cpp/pdb_read.cpp(93): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30283pdb_cpp/pdb_read.cpp(95): warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30284pdb_cpp/pdb_read.cpp(114): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30285pdb_cpp/pdb_read.cpp(115): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30286pdb_cpp/pdb_read.cpp(516): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30287pdb_cpp/pdb_read.cpp(517): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30288pdb_cpp/pdb_read.cpp(665): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30289pdb_sprntf.cpp
30290pdb_cpp/pdb_sprntf.cpp(81): warning C4244: '=': conversion from '__int64' to 'int', possible loss of data
30291pdb_cpp/pdb_sprntf.cpp(129): warning C4244: '=': conversion from '__int64' to 'int', possible loss of data
30292pdb_cpp/pdb_sprntf.cpp(151): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
30293pdb_cpp/pdb_sprntf.cpp(220): warning C4244: 'initializing': conversion from '__int64' to 'int', possible loss of data
30294pdb_cpp/pdb_sprntf.cpp(284): warning C4244: '=': conversion from '__int64' to 'int', possible loss of data
30295pdb_cpp/pdb_sprntf.cpp(461): warning C4244: 'return': conversion from '__int64' to 'int', possible loss of data
30296pdb_sscanf.cpp
30297pdb_type.cpp
30298pdbinput.cpp
30299Microsoft (R) Library Manager Version 14.29.30152.0
30300Copyright (C) Microsoft Corporation. All rights reserved.
30301
30302C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30303!!
30304
30305 ********************************************************************************
30306 Please consider removing the following classifiers in favor of a SPDX license expression:
30307
30308 License :: Free for non-commercial use
30309
30310 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30311 ********************************************************************************
30312
30313!!
30314 self._finalize_license_expression()
30315running build
30316running build_py
30317creating build\lib.win-amd64-cpython-311\chimerax\pdb
30318copying src\gui.py -> build\lib.win-amd64-cpython-311\chimerax\pdb
30319copying src\pdb.py -> build\lib.win-amd64-cpython-311\chimerax\pdb
30320copying src\uniprot_id.py -> build\lib.win-amd64-cpython-311\chimerax\pdb
30321copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\pdb
30322copying src\libpdb.lib -> build\lib.win-amd64-cpython-311\chimerax\pdb
30323running build_ext
30324building 'chimerax.pdb._pdbio' extension
30325creating build\temp.win-amd64-cpython-311\Release\pdbio_cpp
30326"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -Ipdb_cpp/ -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tppdbio_cpp/PDBio.cpp /Fobuild\temp.win-amd64-cpython-311\Release\pdbio_cpp\PDBio.obj
30327PDBio.cpp
30328C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
30329c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30330C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
30331C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
30332c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30333C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(49): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
30334C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
30335C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
30336C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>' needs to have dll-interface to be used by clients of class 'element::Element'
30337C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(77): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const int,const element::Element *>>>'
30338C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(78): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
30339C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
30340C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'element::Element'
30341C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30342C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(80): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<int>>' needs to have dll-interface to be used by clients of class 'element::Element'
30343C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(76): note: see declaration of 'std::set<int,std::less<int>,std::allocator<int>>'
30344C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
30345C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
30346C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(60): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
30347C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(59): note: see declaration of 'std::set<const void *,std::less<const void *>,std::allocator<const void *>>'
30348C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(61): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
30349C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30350C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
30351c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30352C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
30353C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30354C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(82): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<atomstruct::Structure *>,std::allocator<std::pair<atomstruct::Structure *const ,atomstruct::ChangeTracker::ChangesArray>>>'
30355C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30356C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(83): note: see declaration of 'std::set<atomstruct::Structure *,std::less<atomstruct::Structure *>,std::allocator<atomstruct::Structure *>>'
30357C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30358c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30359C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30360c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30361C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOCS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30362c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30363C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30364c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30365C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30366c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30367C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30368c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30369C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_CHAIN_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30370c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30371C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30372c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30373C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30374c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30375C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30376c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30377C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30378c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30379C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30380c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30381C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_ELEMENT': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30382c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30383C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30384c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30385C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30386c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30387C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30388c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30389C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_INSERTION_CODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30390c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30391C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30392c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30393C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30394c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30395C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30396c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30397C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30398c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30399C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30400c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30401C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30402c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30403C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30404c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30405C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(116): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30406c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30407C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(117): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30408c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30409C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(118): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30410c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30411C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(119): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30412c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30413C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(120): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30414c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30415C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(121): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30416c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30417C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(122): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30418c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30419C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(123): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30420c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30421C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(124): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30422c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30423C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(125): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30424c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30425C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(126): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30426c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30427C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(127): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30428c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30429C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(128): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30430c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30431C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(129): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30432c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30433C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(130): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30434c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30435C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(131): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30436c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30437C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(132): warning C4251: 'atomstruct::ChangeTracker::REASON_WORM_RIBBON': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30438c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30439C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\ChangeTracker.h(306): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
30440c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30441C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
30442C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(53): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<atomstruct::DestructionObserver *>,std::allocator<atomstruct::DestructionObserver *>>'
30443C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(54): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<void *>,std::allocator<void *>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
30444C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<void *,std::less<void *>,std::allocator<void *>>'
30445C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
30446c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30447C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
30448C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
30450C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30451C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
30452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30453C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
30454C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30455C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
30456C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30457C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
30458C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30459C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
30460C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30461C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
30462C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
30463c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30464C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
30465C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(61): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
30466c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30467C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(62): warning C4251: 'atomstruct::StructureSeq::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
30468c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30469C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(66): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
30470C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(51): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::SeqPos,std::less<atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *const ,atomstruct::StructureSeq::SeqPos>>>'
30471C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(67): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
30472C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
30473C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(122): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
30474C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): warning C4251: 'atomstruct::CompSSInfo::strands': class 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
30475C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(42): note: see declaration of 'std::vector<std::pair<atomstruct::Residue *,atomstruct::Residue *>,std::allocator<std::pair<atomstruct::Residue *,atomstruct::Residue *>>>'
30476C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): warning C4251: 'atomstruct::CompSSInfo::sheets': class 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
30477C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(43): note: see declaration of 'std::vector<std::set<int,std::less<int>,std::allocator<int>>,std::allocator<std::set<int,std::less<int>,std::allocator<int>>>>'
30478C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): warning C4251: 'atomstruct::CompSSInfo::strands_parallel': class 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
30479C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(44): note: see declaration of 'std::map<std::pair<int,int>,bool,std::less<std::pair<int,int>>,std::allocator<std::pair<const std::pair<int,int>,bool>>>'
30480C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): warning C4251: 'atomstruct::CompSSInfo::helix_info': class 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CompSSInfo'
30481C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CompSS.h(45): note: see declaration of 'std::vector<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>,std::allocator<std::pair<std::pair<atomstruct::Residue *,atomstruct::Residue *>,char>>>'
30482C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
30483c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30484C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
30485C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(63): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
30486C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\PBManager.h(58): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<std::string>,std::allocator<std::pair<const std::string,atomstruct::Proxy_PBGroup *>>>'
30487C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
30488c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30489C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
30490C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(43): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
30491C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(41): note: see declaration of 'std::set<atomstruct::Bond *,std::less<atomstruct::Bond *>,std::allocator<atomstruct::Bond *>>'
30492C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(44): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
30493C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(40): note: see declaration of 'std::set<atomstruct::Atom *,std::less<atomstruct::Atom *>,std::allocator<atomstruct::Atom *>>'
30494C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
30495c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30496C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(110): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
30497C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
30499C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(147): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30500C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
30501C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(151): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30502C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(120): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<atomstruct::CoordSet *>>'
30503C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30504C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
30505C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(163): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30506C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\StructureSeq.h(50): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<atomstruct::Residue *>>'
30507C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): warning C4251: 'atomstruct::Structure::_res_numbering_valid': class 'std::vector<bool,std::allocator<bool>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30508C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(165): note: see declaration of 'std::vector<bool,std::allocator<bool>>'
30509C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(176): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30510C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(128): note: see declaration of 'std::set<atomstruct::Ring,std::less<atomstruct::Ring>,std::allocator<atomstruct::Ring>>'
30511C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(283): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30512c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30513C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(287): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
30514C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
30515C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
30516c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30517C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
30518C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(49): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
30519C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
30520C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
30521C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
30522C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(52): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
30523C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(51): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<const atomstruct::Atom *>,std::equal_to<const atomstruct::Atom *>,std::allocator<std::pair<const atomstruct::Atom *const ,float>>>'
30524C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(77): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
30525C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(80): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
30526C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
30527c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30528C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(68): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
30529C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(124): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
30530C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(123): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<unsigned char>,std::allocator<std::pair<const unsigned char,atomstruct::Atom::_Alt_loc_info>>>'
30531C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
30532C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(63): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<atomstruct::Bond *>>'
30533C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(127): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
30534C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
30535C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(134): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
30536C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
30537C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(136): warning C4251: 'atomstruct::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
30538c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30539C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(137): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
30540C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
30541C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(143): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
30542C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
30543C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(201): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
30544C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(205): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
30545C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(223): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
30546C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
30547c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
30549C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(59): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
30550C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Atom.h(91): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<const atomstruct::Ring *>>'
30551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Bond.h(128): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
30552C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::PBGroup>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::PBGroup>'
30553c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30554C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(61): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::PBGroup>' being compiled
30555C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(70): warning C4251: 'atomstruct::PBGroup::_category': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::PBGroup'
30556c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30557C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(169): warning C4251: 'atomstruct::StructurePBGroup::_pbonds': class 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructurePBGroup'
30558C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(63): note: see declaration of 'std::set<atomstruct::Pseudobond *,std::less<atomstruct::Pseudobond *>,std::allocator<atomstruct::Pseudobond *>>'
30559C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): warning C4251: 'atomstruct::CS_PBGroup::_pbonds': class 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CS_PBGroup'
30560C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/PBGroup.h(199): note: see declaration of 'std::unordered_map<const atomstruct::CoordSet *,atomstruct::PBGroup::Pseudobonds,std::hash<const atomstruct::CoordSet *>,std::equal_to<const atomstruct::CoordSet *>,std::allocator<std::pair<const atomstruct::CoordSet *const ,atomstruct::PBGroup::Pseudobonds>>>'
30561C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Pseudobond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Pseudobond>'
30562c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30563C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Pseudobond.h(52): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Pseudobond>' being compiled
30564C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
30565c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30566C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(53): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
30567C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(81): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30568C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Ring.h(64): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<atomstruct::Atom *>>'
30569C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(83): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30570c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30571C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(85): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30572c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30573C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(86): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30574c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30575C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(162): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30576C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30577C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(163): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
30579C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(164): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30580C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30581C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(165): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30582C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30583C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(166): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30584C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30585C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(167): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30586C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30587C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(168): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::ResName,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30588C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Sequence.h(99): note: see declaration of 'std::vector<atomstruct::ResName,std::allocator<std::string>>'
30589C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(169): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30591C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(170): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30592C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30593C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(171): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30594C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30595C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(172): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30596C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30597C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(173): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30598C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30599C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(174): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30600C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\element/Element.h(79): note: see declaration of 'std::set<std::string,std::less<std::string>,std::allocator<std::string>>'
30601C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
30602C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(175): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,std::map<atomstruct::ResName,char,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,char>>>>>>'
30603C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Residue.h(126): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
30604C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
30605c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30606C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
30607C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\CoordSet.h(44): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
30608C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\CoordSet.h(46): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<atomstruct::Coord>>'
30609C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
30610c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30611C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
30612C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(58): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
30613C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(50): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<tmpl::Bond *>>'
30614C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(61): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
30615C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\string_types.h(44): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
30616C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(64): warning C4251: 'tmpl::Atom::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
30617c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30618C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(65): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
30619C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
30620C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
30621c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30622C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Bond.h(39): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
30623C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
30624c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\stdexcept(101): note: see declaration of 'std::runtime_error'
30625C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\TAexcept.h(36): note: see declaration of 'tmpl::TA_exception'
30626C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
30627c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30628C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(47): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
30629C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(85): warning C4251: 'tmpl::Residue::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
30630C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\Structure.h(121): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>,std::less<std::string>,std::allocator<std::pair<const atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<std::string>>>>>'
30631C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(88): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
30632c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30633C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(89): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
30634C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(80): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<std::string>,std::allocator<std::pair<const atomstruct::AtomName,tmpl::Atom *>>>'
30635C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(91): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
30636c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30637C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Residue.h(92): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
30638C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Atom.h(51): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<tmpl::Atom *>>'
30639C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
30640c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30641C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(48): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
30642C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(57): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
30643C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(52): note: see declaration of 'std::set<tmpl::Atom *,std::less<tmpl::Atom *>,std::allocator<tmpl::Atom *>>'
30644C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(58): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
30645C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(53): note: see declaration of 'std::set<tmpl::Bond *,std::less<tmpl::Bond *>,std::allocator<tmpl::Bond *>>'
30646C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(59): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
30647C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(54): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<tmpl::CoordSet *>>'
30648C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(60): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
30649C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct\tmpl\Molecule.h(55): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<std::string>,std::allocator<std::pair<const atomstruct::ResName,tmpl::Residue *>>>'
30650C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/MolResId.h(43): warning C4251: 'atomstruct::MolResId::chain': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::MolResId'
30651c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
30652pdbio_cpp/PDBio.cpp(95): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
30653pdbio_cpp/PDBio.cpp(113): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
30654pdbio_cpp/PDBio.cpp(129): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
30655pdbio_cpp/PDBio.cpp(134): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30656pdbio_cpp/PDBio.cpp(137): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30657pdbio_cpp/PDBio.cpp(167): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
30658pdbio_cpp/PDBio.cpp(159): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30659pdbio_cpp/PDBio.cpp(181): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30660pdbio_cpp/PDBio.cpp(230): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30661pdbio_cpp/PDBio.cpp(231): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30662pdbio_cpp/PDBio.cpp(234): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30663pdbio_cpp/PDBio.cpp(240): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30664pdbio_cpp/PDBio.cpp(246): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30665pdbio_cpp/PDBio.cpp(252): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30666pdbio_cpp/PDBio.cpp(273): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30667pdbio_cpp/PDBio.cpp(300): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30668pdbio_cpp/PDBio.cpp(306): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30669pdbio_cpp/PDBio.cpp(312): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30670pdbio_cpp/PDBio.cpp(318): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30671pdbio_cpp/PDBio.cpp(386): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
30672pdbio_cpp/PDBio.cpp(398): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30673pdbio_cpp/PDBio.cpp(400): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30674pdbio_cpp/PDBio.cpp(416): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30675pdbio_cpp/PDBio.cpp(420): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30676pdbio_cpp/PDBio.cpp(424): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30677pdbio_cpp/PDBio.cpp(726): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
30678pdbio_cpp/PDBio.cpp(955): warning C4267: 'initializing': conversion from 'size_t' to 'unsigned int', possible loss of data
30679pdbio_cpp/PDBio.cpp(1032): warning C4244: 'argument': conversion from 'pdb::PDB::Real' to 'float', possible loss of data
30680pdbio_cpp/PDBio.cpp(1033): warning C4244: 'argument': conversion from 'pdb::PDB::Real' to 'float', possible loss of data
30681pdbio_cpp/PDBio.cpp(1044): warning C4244: 'argument': conversion from 'pdb::PDB::Real' to 'float', possible loss of data
30682pdbio_cpp/PDBio.cpp(1046): warning C4244: 'argument': conversion from 'pdb::PDB::Real' to 'float', possible loss of data
30683pdbio_cpp/PDBio.cpp(1047): warning C4244: 'argument': conversion from 'pdb::PDB::Real' to 'float', possible loss of data
30684pdbio_cpp/PDBio.cpp(1072): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
30685pdbio_cpp/PDBio.cpp(1073): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
30686pdbio_cpp/PDBio.cpp(1074): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
30687pdbio_cpp/PDBio.cpp(1075): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
30688pdbio_cpp/PDBio.cpp(1076): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
30689pdbio_cpp/PDBio.cpp(1077): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
30690pdbio_cpp/PDBio.cpp(1178): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
30691pdbio_cpp/PDBio.cpp(1407): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30692pdbio_cpp/PDBio.cpp(1408): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30693pdbio_cpp/PDBio.cpp(1414): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30694pdbio_cpp/PDBio.cpp(1415): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30695pdbio_cpp/PDBio.cpp(1429): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30696pdbio_cpp/PDBio.cpp(1430): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30697pdbio_cpp/PDBio.cpp(1611): warning C4996: 'fdopen': The POSIX name for this item is deprecated. Instead, use the ISO C and C++ conformant name: _fdopen. See online help for details.
30698pdbio_cpp/PDBio.cpp(1883): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30699pdbio_cpp/PDBio.cpp(1884): warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30700pdbio_cpp/PDBio.cpp(1921): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
30701pdbio_cpp/PDBio.cpp(1929): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30702pdbio_cpp/PDBio.cpp(1939): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30703pdbio_cpp/PDBio.cpp(1996): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30704pdbio_cpp/PDBio.cpp(2007): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30705pdbio_cpp/PDBio.cpp(2008): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30706pdbio_cpp/PDBio.cpp(2009): warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30707pdbio_cpp/PDBio.cpp(1871): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30708pdbio_cpp/PDBio.cpp(1886): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
30709"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:pdb_cpp/lib /LIBPATH:pdb_cpp/ /LIBPATH:src/ /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\pdb_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libatomstruct.lib libelement.lib libpyinstance.lib liblogger.lib libpdb.lib libpdbconnect.lib libarrays.lib /EXPORT:PyInit__pdbio build\temp.win-amd64-cpython-311\Release\pdbio_cpp\PDBio.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\pdb\_pdbio.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\pdbio_cpp\_pdbio.cp311-win_amd64.lib
30710 Creating library build\temp.win-amd64-cpython-311\Release\pdbio_cpp\_pdbio.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\pdbio_cpp\_pdbio.cp311-win_amd64.exp
30711Generating code
30712Finished generating code
30713running bdist_wheel
30714installing to build\bdist.win-amd64\wheel
30715running install
30716running install_lib
30717running build_ext
30718creating build\bdist.win-amd64\wheel
30719creating build\bdist.win-amd64\wheel\chimerax
30720creating build\bdist.win-amd64\wheel\chimerax\pdb
30721copying build\lib.win-amd64-cpython-311\chimerax\pdb\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb
30722copying build\lib.win-amd64-cpython-311\chimerax\pdb\libpdb.lib -> build\bdist.win-amd64\wheel\.\chimerax\pdb
30723copying build\lib.win-amd64-cpython-311\chimerax\pdb\pdb.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb
30724copying build\lib.win-amd64-cpython-311\chimerax\pdb\uniprot_id.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb
30725copying build\lib.win-amd64-cpython-311\chimerax\pdb\_pdbio.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\pdb
30726copying build\lib.win-amd64-cpython-311\chimerax\pdb\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb
30727running install_egg_info
30728running egg_info
30729creating ChimeraX_PDB.egg-info
30730writing ChimeraX_PDB.egg-info\PKG-INFO
30731writing dependency_links to ChimeraX_PDB.egg-info\dependency_links.txt
30732writing requirements to ChimeraX_PDB.egg-info\requires.txt
30733writing top-level names to ChimeraX_PDB.egg-info\top_level.txt
30734writing manifest file 'ChimeraX_PDB.egg-info\SOURCES.txt'
30735reading manifest file 'ChimeraX_PDB.egg-info\SOURCES.txt'
30736writing manifest file 'ChimeraX_PDB.egg-info\SOURCES.txt'
30737Copying ChimeraX_PDB.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_PDB-2.7.11-py3.11.egg-info
30738running install_scripts
30739C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
30740 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
30741creating build\bdist.win-amd64\wheel\chimerax_pdb-2.7.11.dist-info\WHEEL
30742creating 'dist\chimerax_pdb-2.7.11-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
30743adding 'chimerax/pdb/__init__.py'
30744adding 'chimerax/pdb/_pdbio.cp311-win_amd64.pyd'
30745adding 'chimerax/pdb/gui.py'
30746adding 'chimerax/pdb/libpdb.lib'
30747adding 'chimerax/pdb/pdb.py'
30748adding 'chimerax/pdb/uniprot_id.py'
30749adding 'chimerax_pdb-2.7.11.dist-info/METADATA'
30750adding 'chimerax_pdb-2.7.11.dist-info/WHEEL'
30751adding 'chimerax_pdb-2.7.11.dist-info/top_level.txt'
30752adding 'chimerax_pdb-2.7.11.dist-info/RECORD'
30753removing build\bdist.win-amd64\wheel
30754Distribution is in .\dist\ChimeraX_PDB-2.7.11-cp311-cp311-win_amd64.whl
30755INFO:
30756
30757make sync
30758make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
30759cp -av dist/*.whl ../../../build/sync
30760'dist/chimerax_pdb-2.7.11-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_pdb-2.7.11-cp311-cp311-win_amd64.whl'
30761make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
30762make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb'
30763make -C pdb_bio build
30764make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
30765if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30766 echo "missing ChimeraX application's python"; exit 1; \
30767else \
30768 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30769fi
30770INFO:
30771Executing: devel build . exit true
30772C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30773!!
30774
30775 ********************************************************************************
30776 Please consider removing the following classifiers in favor of a SPDX license expression:
30777
30778 License :: Free for non-commercial use
30779
30780 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30781 ********************************************************************************
30782
30783!!
30784 self._finalize_license_expression()
30785running build
30786running build_py
30787creating build\lib\chimerax\pdb_bio
30788copying src\fetch_pdb_bio.py -> build\lib\chimerax\pdb_bio
30789copying src\__init__.py -> build\lib\chimerax\pdb_bio
30790running bdist_wheel
30791installing to build\bdist.win-amd64\wheel
30792running install
30793running install_lib
30794creating build\bdist.win-amd64\wheel
30795creating build\bdist.win-amd64\wheel\chimerax
30796creating build\bdist.win-amd64\wheel\chimerax\pdb_bio
30797copying build\lib\chimerax\pdb_bio\fetch_pdb_bio.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_bio
30798copying build\lib\chimerax\pdb_bio\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_bio
30799running install_egg_info
30800running egg_info
30801creating ChimeraX_PDBBio.egg-info
30802writing ChimeraX_PDBBio.egg-info\PKG-INFO
30803writing dependency_links to ChimeraX_PDBBio.egg-info\dependency_links.txt
30804writing requirements to ChimeraX_PDBBio.egg-info\requires.txt
30805writing top-level names to ChimeraX_PDBBio.egg-info\top_level.txt
30806writing manifest file 'ChimeraX_PDBBio.egg-info\SOURCES.txt'
30807reading manifest file 'ChimeraX_PDBBio.egg-info\SOURCES.txt'
30808writing manifest file 'ChimeraX_PDBBio.egg-info\SOURCES.txt'
30809Copying ChimeraX_PDBBio.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_PDBBio-1.0.1-py3.11.egg-info
30810running install_scripts
30811creating build\bdist.win-amd64\wheel\chimerax_pdbbio-1.0.1.dist-info\WHEEL
30812creating 'dist\chimerax_pdbbio-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
30813adding 'chimerax/pdb_bio/__init__.py'
30814adding 'chimerax/pdb_bio/fetch_pdb_bio.py'
30815adding 'chimerax_pdbbio-1.0.1.dist-info/METADATA'
30816adding 'chimerax_pdbbio-1.0.1.dist-info/WHEEL'
30817adding 'chimerax_pdbbio-1.0.1.dist-info/top_level.txt'
30818adding 'chimerax_pdbbio-1.0.1.dist-info/RECORD'
30819removing build\bdist.win-amd64\wheel
30820Distribution is in .\dist\ChimeraX_PDBBio-1.0.1-py3-none-any.whl
30821INFO:
30822
30823make sync
30824make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
30825cp -av dist/*.whl ../../../build/sync
30826'dist/chimerax_pdbbio-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_pdbbio-1.0.1-py3-none-any.whl'
30827make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
30828make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_bio'
30829make -C pdb_matrices build
30830make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
30831if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30832 echo "missing ChimeraX application's python"; exit 1; \
30833else \
30834 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30835fi
30836INFO:
30837Executing: devel build . exit true
30838C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30839!!
30840
30841 ********************************************************************************
30842 Please consider removing the following classifiers in favor of a SPDX license expression:
30843
30844 License :: Free for non-commercial use
30845
30846 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30847 ********************************************************************************
30848
30849!!
30850 self._finalize_license_expression()
30851running build
30852running build_py
30853creating build\lib\chimerax\pdb_matrices
30854copying src\parsecif.py -> build\lib\chimerax\pdb_matrices
30855copying src\parsemmcif.py -> build\lib\chimerax\pdb_matrices
30856copying src\parsepdb.py -> build\lib\chimerax\pdb_matrices
30857copying src\structure_matrices.py -> build\lib\chimerax\pdb_matrices
30858copying src\__init__.py -> build\lib\chimerax\pdb_matrices
30859running bdist_wheel
30860installing to build\bdist.win-amd64\wheel
30861running install
30862running install_lib
30863creating build\bdist.win-amd64\wheel
30864creating build\bdist.win-amd64\wheel\chimerax
30865creating build\bdist.win-amd64\wheel\chimerax\pdb_matrices
30866copying build\lib\chimerax\pdb_matrices\parsecif.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_matrices
30867copying build\lib\chimerax\pdb_matrices\parsemmcif.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_matrices
30868copying build\lib\chimerax\pdb_matrices\parsepdb.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_matrices
30869copying build\lib\chimerax\pdb_matrices\structure_matrices.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_matrices
30870copying build\lib\chimerax\pdb_matrices\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\pdb_matrices
30871running install_egg_info
30872running egg_info
30873creating ChimeraX_PDBMatrices.egg-info
30874writing ChimeraX_PDBMatrices.egg-info\PKG-INFO
30875writing dependency_links to ChimeraX_PDBMatrices.egg-info\dependency_links.txt
30876writing requirements to ChimeraX_PDBMatrices.egg-info\requires.txt
30877writing top-level names to ChimeraX_PDBMatrices.egg-info\top_level.txt
30878writing manifest file 'ChimeraX_PDBMatrices.egg-info\SOURCES.txt'
30879reading manifest file 'ChimeraX_PDBMatrices.egg-info\SOURCES.txt'
30880writing manifest file 'ChimeraX_PDBMatrices.egg-info\SOURCES.txt'
30881Copying ChimeraX_PDBMatrices.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_PDBMatrices-1.0-py3.11.egg-info
30882running install_scripts
30883creating build\bdist.win-amd64\wheel\chimerax_pdbmatrices-1.0.dist-info\WHEEL
30884creating 'dist\chimerax_pdbmatrices-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
30885adding 'chimerax/pdb_matrices/__init__.py'
30886adding 'chimerax/pdb_matrices/parsecif.py'
30887adding 'chimerax/pdb_matrices/parsemmcif.py'
30888adding 'chimerax/pdb_matrices/parsepdb.py'
30889adding 'chimerax/pdb_matrices/structure_matrices.py'
30890adding 'chimerax_pdbmatrices-1.0.dist-info/METADATA'
30891adding 'chimerax_pdbmatrices-1.0.dist-info/WHEEL'
30892adding 'chimerax_pdbmatrices-1.0.dist-info/top_level.txt'
30893adding 'chimerax_pdbmatrices-1.0.dist-info/RECORD'
30894removing build\bdist.win-amd64\wheel
30895Distribution is in .\dist\ChimeraX_PDBMatrices-1.0-py3-none-any.whl
30896INFO:
30897
30898make sync
30899make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
30900cp -av dist/*.whl ../../../build/sync
30901'dist/chimerax_pdbmatrices-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_pdbmatrices-1.0-py3-none-any.whl'
30902make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
30903make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pdb_matrices'
30904make -C pick_blobs build
30905make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
30906if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30907 echo "missing ChimeraX application's python"; exit 1; \
30908else \
30909 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30910fi
30911INFO:
30912Executing: devel build . exit true
30913C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30914!!
30915
30916 ********************************************************************************
30917 Please consider removing the following classifiers in favor of a SPDX license expression:
30918
30919 License :: Free for non-commercial use
30920
30921 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30922 ********************************************************************************
30923
30924!!
30925 self._finalize_license_expression()
30926running build
30927running build_py
30928creating build\lib\chimerax\pick_blobs
30929copying src\pickblobs.py -> build\lib\chimerax\pick_blobs
30930copying src\__init__.py -> build\lib\chimerax\pick_blobs
30931copying src\pickblobs.png -> build\lib\chimerax\pick_blobs
30932running bdist_wheel
30933installing to build\bdist.win-amd64\wheel
30934running install
30935running install_lib
30936creating build\bdist.win-amd64\wheel
30937creating build\bdist.win-amd64\wheel\chimerax
30938creating build\bdist.win-amd64\wheel\chimerax\pick_blobs
30939copying build\lib\chimerax\pick_blobs\pickblobs.png -> build\bdist.win-amd64\wheel\.\chimerax\pick_blobs
30940copying build\lib\chimerax\pick_blobs\pickblobs.py -> build\bdist.win-amd64\wheel\.\chimerax\pick_blobs
30941copying build\lib\chimerax\pick_blobs\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\pick_blobs
30942running install_egg_info
30943running egg_info
30944creating ChimeraX_PickBlobs.egg-info
30945writing ChimeraX_PickBlobs.egg-info\PKG-INFO
30946writing dependency_links to ChimeraX_PickBlobs.egg-info\dependency_links.txt
30947writing requirements to ChimeraX_PickBlobs.egg-info\requires.txt
30948writing top-level names to ChimeraX_PickBlobs.egg-info\top_level.txt
30949writing manifest file 'ChimeraX_PickBlobs.egg-info\SOURCES.txt'
30950reading manifest file 'ChimeraX_PickBlobs.egg-info\SOURCES.txt'
30951writing manifest file 'ChimeraX_PickBlobs.egg-info\SOURCES.txt'
30952Copying ChimeraX_PickBlobs.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_PickBlobs-1.0.1-py3.11.egg-info
30953running install_scripts
30954creating build\bdist.win-amd64\wheel\chimerax_pickblobs-1.0.1.dist-info\WHEEL
30955creating 'dist\chimerax_pickblobs-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
30956adding 'chimerax/pick_blobs/__init__.py'
30957adding 'chimerax/pick_blobs/pickblobs.png'
30958adding 'chimerax/pick_blobs/pickblobs.py'
30959adding 'chimerax_pickblobs-1.0.1.dist-info/METADATA'
30960adding 'chimerax_pickblobs-1.0.1.dist-info/WHEEL'
30961adding 'chimerax_pickblobs-1.0.1.dist-info/top_level.txt'
30962adding 'chimerax_pickblobs-1.0.1.dist-info/RECORD'
30963removing build\bdist.win-amd64\wheel
30964Distribution is in .\dist\ChimeraX_PickBlobs-1.0.1-py3-none-any.whl
30965INFO:
30966
30967make sync
30968make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
30969cp -av dist/*.whl ../../../build/sync
30970'dist/chimerax_pickblobs-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_pickblobs-1.0.1-py3-none-any.whl'
30971make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
30972make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pick_blobs'
30973make -C positions build
30974make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
30975if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
30976 echo "missing ChimeraX application's python"; exit 1; \
30977else \
30978 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
30979fi
30980INFO:
30981Executing: devel build . exit true
30982C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
30983!!
30984
30985 ********************************************************************************
30986 Please consider removing the following classifiers in favor of a SPDX license expression:
30987
30988 License :: Free for non-commercial use
30989
30990 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
30991 ********************************************************************************
30992
30993!!
30994 self._finalize_license_expression()
30995running build
30996running build_py
30997creating build\lib\chimerax\positions
30998copying src\positions.py -> build\lib\chimerax\positions
30999copying src\__init__.py -> build\lib\chimerax\positions
31000running bdist_wheel
31001installing to build\bdist.win-amd64\wheel
31002running install
31003running install_lib
31004creating build\bdist.win-amd64\wheel
31005creating build\bdist.win-amd64\wheel\chimerax
31006creating build\bdist.win-amd64\wheel\chimerax\positions
31007copying build\lib\chimerax\positions\positions.py -> build\bdist.win-amd64\wheel\.\chimerax\positions
31008copying build\lib\chimerax\positions\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\positions
31009running install_egg_info
31010running egg_info
31011creating ChimeraX_Positions.egg-info
31012writing ChimeraX_Positions.egg-info\PKG-INFO
31013writing dependency_links to ChimeraX_Positions.egg-info\dependency_links.txt
31014writing requirements to ChimeraX_Positions.egg-info\requires.txt
31015writing top-level names to ChimeraX_Positions.egg-info\top_level.txt
31016writing manifest file 'ChimeraX_Positions.egg-info\SOURCES.txt'
31017reading manifest file 'ChimeraX_Positions.egg-info\SOURCES.txt'
31018writing manifest file 'ChimeraX_Positions.egg-info\SOURCES.txt'
31019Copying ChimeraX_Positions.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Positions-1.0-py3.11.egg-info
31020running install_scripts
31021creating build\bdist.win-amd64\wheel\chimerax_positions-1.0.dist-info\WHEEL
31022creating 'dist\chimerax_positions-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31023adding 'chimerax/positions/__init__.py'
31024adding 'chimerax/positions/positions.py'
31025adding 'chimerax_positions-1.0.dist-info/METADATA'
31026adding 'chimerax_positions-1.0.dist-info/WHEEL'
31027adding 'chimerax_positions-1.0.dist-info/top_level.txt'
31028adding 'chimerax_positions-1.0.dist-info/RECORD'
31029removing build\bdist.win-amd64\wheel
31030Distribution is in .\dist\ChimeraX_Positions-1.0-py3-none-any.whl
31031INFO:
31032
31033make sync
31034make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
31035cp -av dist/*.whl ../../../build/sync
31036'dist/chimerax_positions-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_positions-1.0-py3-none-any.whl'
31037make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
31038make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/positions'
31039make -C preset_mgr build
31040make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
31041if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31042 echo "missing ChimeraX application's python"; exit 1; \
31043else \
31044 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31045fi
31046INFO:
31047Executing: devel build . exit true
31048C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31049!!
31050
31051 ********************************************************************************
31052 Please consider removing the following classifiers in favor of a SPDX license expression:
31053
31054 License :: Free for non-commercial use
31055
31056 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31057 ********************************************************************************
31058
31059!!
31060 self._finalize_license_expression()
31061running build
31062running build_py
31063creating build\lib\chimerax\preset_mgr
31064copying src\builtin.py -> build\lib\chimerax\preset_mgr
31065copying src\cmd.py -> build\lib\chimerax\preset_mgr
31066copying src\manager.py -> build\lib\chimerax\preset_mgr
31067copying src\settings.py -> build\lib\chimerax\preset_mgr
31068copying src\__init__.py -> build\lib\chimerax\preset_mgr
31069running bdist_wheel
31070installing to build\bdist.win-amd64\wheel
31071running install
31072running install_lib
31073creating build\bdist.win-amd64\wheel
31074creating build\bdist.win-amd64\wheel\chimerax
31075creating build\bdist.win-amd64\wheel\chimerax\preset_mgr
31076copying build\lib\chimerax\preset_mgr\builtin.py -> build\bdist.win-amd64\wheel\.\chimerax\preset_mgr
31077copying build\lib\chimerax\preset_mgr\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\preset_mgr
31078copying build\lib\chimerax\preset_mgr\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\preset_mgr
31079copying build\lib\chimerax\preset_mgr\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\preset_mgr
31080copying build\lib\chimerax\preset_mgr\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\preset_mgr
31081running install_egg_info
31082running egg_info
31083creating ChimeraX_PresetMgr.egg-info
31084writing ChimeraX_PresetMgr.egg-info\PKG-INFO
31085writing dependency_links to ChimeraX_PresetMgr.egg-info\dependency_links.txt
31086writing requirements to ChimeraX_PresetMgr.egg-info\requires.txt
31087writing top-level names to ChimeraX_PresetMgr.egg-info\top_level.txt
31088writing manifest file 'ChimeraX_PresetMgr.egg-info\SOURCES.txt'
31089reading manifest file 'ChimeraX_PresetMgr.egg-info\SOURCES.txt'
31090writing manifest file 'ChimeraX_PresetMgr.egg-info\SOURCES.txt'
31091Copying ChimeraX_PresetMgr.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_PresetMgr-1.1.3-py3.11.egg-info
31092running install_scripts
31093creating build\bdist.win-amd64\wheel\chimerax_presetmgr-1.1.3.dist-info\WHEEL
31094creating 'dist\chimerax_presetmgr-1.1.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31095adding 'chimerax/preset_mgr/__init__.py'
31096adding 'chimerax/preset_mgr/builtin.py'
31097adding 'chimerax/preset_mgr/cmd.py'
31098adding 'chimerax/preset_mgr/manager.py'
31099adding 'chimerax/preset_mgr/settings.py'
31100adding 'chimerax_presetmgr-1.1.3.dist-info/METADATA'
31101adding 'chimerax_presetmgr-1.1.3.dist-info/WHEEL'
31102adding 'chimerax_presetmgr-1.1.3.dist-info/top_level.txt'
31103adding 'chimerax_presetmgr-1.1.3.dist-info/RECORD'
31104removing build\bdist.win-amd64\wheel
31105Distribution is in .\dist\ChimeraX_PresetMgr-1.1.3-py3-none-any.whl
31106INFO:
31107
31108make sync
31109make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
31110cp -av dist/*.whl ../../../build/sync
31111'dist/chimerax_presetmgr-1.1.3-py3-none-any.whl' -> '../../../build/sync/chimerax_presetmgr-1.1.3-py3-none-any.whl'
31112make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
31113make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/preset_mgr'
31114make -C profile_grids build
31115make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
31116if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31117 echo "missing ChimeraX application's python"; exit 1; \
31118else \
31119 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31120fi
31121INFO:
31122Executing: devel build . exit true
31123C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31124!!
31125
31126 ********************************************************************************
31127 Please consider removing the following classifiers in favor of a SPDX license expression:
31128
31129 License :: Free for non-commercial use
31130
31131 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31132 ********************************************************************************
31133
31134!!
31135 self._finalize_license_expression()
31136running build
31137running build_py
31138creating build\lib.win-amd64-cpython-311\chimerax\profile_grids
31139copying src\grid_canvas.py -> build\lib.win-amd64-cpython-311\chimerax\profile_grids
31140copying src\settings.py -> build\lib.win-amd64-cpython-311\chimerax\profile_grids
31141copying src\settings_tool.py -> build\lib.win-amd64-cpython-311\chimerax\profile_grids
31142copying src\tool.py -> build\lib.win-amd64-cpython-311\chimerax\profile_grids
31143copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\profile_grids
31144running build_ext
31145building 'chimerax.profile_grids._profile_grids' extension
31146creating build\temp.win-amd64-cpython-311\Release\_pg
31147"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_pg/pg.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_pg\pg.obj
31148pg.cpp
31149C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
31150c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
31151C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(104): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
31152C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\pyinstance/PythonInstance.declare.h(78): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
31153c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
31154C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
31155C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(63): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31156C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
31157C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(64): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31158C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
31159C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(65): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31160C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(61): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<atomstruct::ResName>,std::allocator<std::pair<const atomstruct::ResName,char>>>'
31161C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(67): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31162C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
31163C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(68): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31164C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(67): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<unsigned int>,std::allocator<std::pair<const unsigned int,unsigned int>>>'
31165C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(69): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31166C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
31167C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(74): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31168C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(59): note: see declaration of 'std::vector<char,std::allocator<char>>'
31169C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(75): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
31170c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include\xstring(4871): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
31171C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\include\atomstruct/Sequence.h(140): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
31172_pg/pg.cpp(143): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
31173C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include\pysupport/convert.h(348): warning C4312: 'reinterpret_cast': conversion from 'long' to 'Ptr' of greater size
31174 with
31175 [
31176 Ptr=atomstruct::Sequence *
31177 ]
31178_pg/pg.cpp(103): note: see reference to function template instantiation 'void pysupport::pylist_of_int_to_cvec_of_ptrs<atomstruct::Sequence*>(PyObject *,std::vector<atomstruct::Sequence *,std::allocator<atomstruct::Sequence *>> &,const char *)' being compiled
31179"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\atomic_lib\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib libatomstruct.lib /EXPORT:PyInit__profile_grids build\temp.win-amd64-cpython-311\Release\_pg\pg.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\profile_grids\_profile_grids.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_pg\_profile_grids.cp311-win_amd64.lib
31180 Creating library build\temp.win-amd64-cpython-311\Release\_pg\_profile_grids.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_pg\_profile_grids.cp311-win_amd64.exp
31181Generating code
31182Finished generating code
31183running bdist_wheel
31184installing to build\bdist.win-amd64\wheel
31185running install
31186running install_lib
31187running build_ext
31188creating build\bdist.win-amd64\wheel
31189creating build\bdist.win-amd64\wheel\chimerax
31190creating build\bdist.win-amd64\wheel\chimerax\profile_grids
31191copying build\lib.win-amd64-cpython-311\chimerax\profile_grids\grid_canvas.py -> build\bdist.win-amd64\wheel\.\chimerax\profile_grids
31192copying build\lib.win-amd64-cpython-311\chimerax\profile_grids\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\profile_grids
31193copying build\lib.win-amd64-cpython-311\chimerax\profile_grids\settings_tool.py -> build\bdist.win-amd64\wheel\.\chimerax\profile_grids
31194copying build\lib.win-amd64-cpython-311\chimerax\profile_grids\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\profile_grids
31195copying build\lib.win-amd64-cpython-311\chimerax\profile_grids\_profile_grids.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\profile_grids
31196copying build\lib.win-amd64-cpython-311\chimerax\profile_grids\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\profile_grids
31197running install_egg_info
31198running egg_info
31199creating ChimeraX_ProfileGrids.egg-info
31200writing ChimeraX_ProfileGrids.egg-info\PKG-INFO
31201writing dependency_links to ChimeraX_ProfileGrids.egg-info\dependency_links.txt
31202writing requirements to ChimeraX_ProfileGrids.egg-info\requires.txt
31203writing top-level names to ChimeraX_ProfileGrids.egg-info\top_level.txt
31204writing manifest file 'ChimeraX_ProfileGrids.egg-info\SOURCES.txt'
31205reading manifest file 'ChimeraX_ProfileGrids.egg-info\SOURCES.txt'
31206writing manifest file 'ChimeraX_ProfileGrids.egg-info\SOURCES.txt'
31207Copying ChimeraX_ProfileGrids.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ProfileGrids-1.4-py3.11.egg-info
31208running install_scripts
31209C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
31210 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
31211creating build\bdist.win-amd64\wheel\chimerax_profilegrids-1.4.dist-info\WHEEL
31212creating 'dist\chimerax_profilegrids-1.4-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
31213adding 'chimerax/profile_grids/__init__.py'
31214adding 'chimerax/profile_grids/_profile_grids.cp311-win_amd64.pyd'
31215adding 'chimerax/profile_grids/grid_canvas.py'
31216adding 'chimerax/profile_grids/settings.py'
31217adding 'chimerax/profile_grids/settings_tool.py'
31218adding 'chimerax/profile_grids/tool.py'
31219adding 'chimerax_profilegrids-1.4.dist-info/METADATA'
31220adding 'chimerax_profilegrids-1.4.dist-info/WHEEL'
31221adding 'chimerax_profilegrids-1.4.dist-info/top_level.txt'
31222adding 'chimerax_profilegrids-1.4.dist-info/RECORD'
31223removing build\bdist.win-amd64\wheel
31224Distribution is in .\dist\ChimeraX_ProfileGrids-1.4-cp311-cp311-win_amd64.whl
31225INFO:
31226
31227make sync
31228make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
31229cp -av dist/*.whl ../../../build/sync
31230'dist/chimerax_profilegrids-1.4-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_profilegrids-1.4-cp311-cp311-win_amd64.whl'
31231make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
31232make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/profile_grids'
31233make -C pubchem build
31234make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
31235if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31236 echo "missing ChimeraX application's python"; exit 1; \
31237else \
31238 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31239fi
31240INFO:
31241Executing: devel build . exit true
31242C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31243!!
31244
31245 ********************************************************************************
31246 Please consider removing the following classifiers in favor of a SPDX license expression:
31247
31248 License :: Free for non-commercial use
31249
31250 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31251 ********************************************************************************
31252
31253!!
31254 self._finalize_license_expression()
31255running build
31256running build_py
31257creating build\lib\chimerax\pubchem
31258copying src\build_ui.py -> build\lib\chimerax\pubchem
31259copying src\pubchem.py -> build\lib\chimerax\pubchem
31260copying src\__init__.py -> build\lib\chimerax\pubchem
31261running bdist_wheel
31262installing to build\bdist.win-amd64\wheel
31263running install
31264running install_lib
31265creating build\bdist.win-amd64\wheel
31266creating build\bdist.win-amd64\wheel\chimerax
31267creating build\bdist.win-amd64\wheel\chimerax\pubchem
31268copying build\lib\chimerax\pubchem\build_ui.py -> build\bdist.win-amd64\wheel\.\chimerax\pubchem
31269copying build\lib\chimerax\pubchem\pubchem.py -> build\bdist.win-amd64\wheel\.\chimerax\pubchem
31270copying build\lib\chimerax\pubchem\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\pubchem
31271running install_egg_info
31272running egg_info
31273creating ChimeraX_PubChem.egg-info
31274writing ChimeraX_PubChem.egg-info\PKG-INFO
31275writing dependency_links to ChimeraX_PubChem.egg-info\dependency_links.txt
31276writing requirements to ChimeraX_PubChem.egg-info\requires.txt
31277writing top-level names to ChimeraX_PubChem.egg-info\top_level.txt
31278writing manifest file 'ChimeraX_PubChem.egg-info\SOURCES.txt'
31279reading manifest file 'ChimeraX_PubChem.egg-info\SOURCES.txt'
31280writing manifest file 'ChimeraX_PubChem.egg-info\SOURCES.txt'
31281Copying ChimeraX_PubChem.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_PubChem-2.2-py3.11.egg-info
31282running install_scripts
31283creating build\bdist.win-amd64\wheel\chimerax_pubchem-2.2.dist-info\WHEEL
31284creating 'dist\chimerax_pubchem-2.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31285adding 'chimerax/pubchem/__init__.py'
31286adding 'chimerax/pubchem/build_ui.py'
31287adding 'chimerax/pubchem/pubchem.py'
31288adding 'chimerax_pubchem-2.2.dist-info/METADATA'
31289adding 'chimerax_pubchem-2.2.dist-info/WHEEL'
31290adding 'chimerax_pubchem-2.2.dist-info/top_level.txt'
31291adding 'chimerax_pubchem-2.2.dist-info/RECORD'
31292removing build\bdist.win-amd64\wheel
31293Distribution is in .\dist\ChimeraX_PubChem-2.2-py3-none-any.whl
31294INFO:
31295
31296make sync
31297make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
31298cp -av dist/*.whl ../../../build/sync
31299'dist/chimerax_pubchem-2.2-py3-none-any.whl' -> '../../../build/sync/chimerax_pubchem-2.2-py3-none-any.whl'
31300make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
31301make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/pubchem'
31302make -C read_pbonds build
31303make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
31304if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31305 echo "missing ChimeraX application's python"; exit 1; \
31306else \
31307 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31308fi
31309INFO:
31310Executing: devel build . exit true
31311C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31312!!
31313
31314 ********************************************************************************
31315 Please consider removing the following classifiers in favor of a SPDX license expression:
31316
31317 License :: Free for non-commercial use
31318
31319 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31320 ********************************************************************************
31321
31322!!
31323 self._finalize_license_expression()
31324running build
31325running build_py
31326creating build\lib\chimerax\read_pbonds
31327copying src\readpbonds.py -> build\lib\chimerax\read_pbonds
31328copying src\__init__.py -> build\lib\chimerax\read_pbonds
31329running bdist_wheel
31330installing to build\bdist.win-amd64\wheel
31331running install
31332running install_lib
31333creating build\bdist.win-amd64\wheel
31334creating build\bdist.win-amd64\wheel\chimerax
31335creating build\bdist.win-amd64\wheel\chimerax\read_pbonds
31336copying build\lib\chimerax\read_pbonds\readpbonds.py -> build\bdist.win-amd64\wheel\.\chimerax\read_pbonds
31337copying build\lib\chimerax\read_pbonds\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\read_pbonds
31338running install_egg_info
31339running egg_info
31340creating ChimeraX_ReadPbonds.egg-info
31341writing ChimeraX_ReadPbonds.egg-info\PKG-INFO
31342writing dependency_links to ChimeraX_ReadPbonds.egg-info\dependency_links.txt
31343writing requirements to ChimeraX_ReadPbonds.egg-info\requires.txt
31344writing top-level names to ChimeraX_ReadPbonds.egg-info\top_level.txt
31345writing manifest file 'ChimeraX_ReadPbonds.egg-info\SOURCES.txt'
31346reading manifest file 'ChimeraX_ReadPbonds.egg-info\SOURCES.txt'
31347writing manifest file 'ChimeraX_ReadPbonds.egg-info\SOURCES.txt'
31348Copying ChimeraX_ReadPbonds.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ReadPbonds-1.0.1-py3.11.egg-info
31349running install_scripts
31350creating build\bdist.win-amd64\wheel\chimerax_readpbonds-1.0.1.dist-info\WHEEL
31351creating 'dist\chimerax_readpbonds-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31352adding 'chimerax/read_pbonds/__init__.py'
31353adding 'chimerax/read_pbonds/readpbonds.py'
31354adding 'chimerax_readpbonds-1.0.1.dist-info/METADATA'
31355adding 'chimerax_readpbonds-1.0.1.dist-info/WHEEL'
31356adding 'chimerax_readpbonds-1.0.1.dist-info/top_level.txt'
31357adding 'chimerax_readpbonds-1.0.1.dist-info/RECORD'
31358removing build\bdist.win-amd64\wheel
31359Distribution is in .\dist\ChimeraX_ReadPbonds-1.0.1-py3-none-any.whl
31360INFO:
31361
31362make sync
31363make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
31364cp -av dist/*.whl ../../../build/sync
31365'dist/chimerax_readpbonds-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_readpbonds-1.0.1-py3-none-any.whl'
31366make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
31367make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/read_pbonds'
31368make -C registration build
31369make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
31370if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31371 echo "missing ChimeraX application's python"; exit 1; \
31372else \
31373 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31374fi
31375INFO:
31376Executing: devel build . exit true
31377C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31378!!
31379
31380 ********************************************************************************
31381 Please consider removing the following classifiers in favor of a SPDX license expression:
31382
31383 License :: Free for non-commercial use
31384
31385 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31386 ********************************************************************************
31387
31388!!
31389 self._finalize_license_expression()
31390running build
31391running build_py
31392creating build\lib\chimerax\registration
31393copying src\cmd.py -> build\lib\chimerax\registration
31394copying src\gui.py -> build\lib\chimerax\registration
31395copying src\nag.py -> build\lib\chimerax\registration
31396copying src\__init__.py -> build\lib\chimerax\registration
31397copying src\registration_form.html -> build\lib\chimerax\registration
31398running bdist_wheel
31399installing to build\bdist.win-amd64\wheel
31400running install
31401running install_lib
31402creating build\bdist.win-amd64\wheel
31403creating build\bdist.win-amd64\wheel\chimerax
31404creating build\bdist.win-amd64\wheel\chimerax\registration
31405copying build\lib\chimerax\registration\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\registration
31406copying build\lib\chimerax\registration\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\registration
31407copying build\lib\chimerax\registration\nag.py -> build\bdist.win-amd64\wheel\.\chimerax\registration
31408copying build\lib\chimerax\registration\registration_form.html -> build\bdist.win-amd64\wheel\.\chimerax\registration
31409copying build\lib\chimerax\registration\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\registration
31410running install_egg_info
31411running egg_info
31412creating ChimeraX_Registration.egg-info
31413writing ChimeraX_Registration.egg-info\PKG-INFO
31414writing dependency_links to ChimeraX_Registration.egg-info\dependency_links.txt
31415writing requirements to ChimeraX_Registration.egg-info\requires.txt
31416writing top-level names to ChimeraX_Registration.egg-info\top_level.txt
31417writing manifest file 'ChimeraX_Registration.egg-info\SOURCES.txt'
31418reading manifest file 'ChimeraX_Registration.egg-info\SOURCES.txt'
31419writing manifest file 'ChimeraX_Registration.egg-info\SOURCES.txt'
31420Copying ChimeraX_Registration.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Registration-1.1.2-py3.11.egg-info
31421running install_scripts
31422creating build\bdist.win-amd64\wheel\chimerax_registration-1.1.2.dist-info\WHEEL
31423creating 'dist\chimerax_registration-1.1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31424adding 'chimerax/registration/__init__.py'
31425adding 'chimerax/registration/cmd.py'
31426adding 'chimerax/registration/gui.py'
31427adding 'chimerax/registration/nag.py'
31428adding 'chimerax/registration/registration_form.html'
31429adding 'chimerax_registration-1.1.2.dist-info/METADATA'
31430adding 'chimerax_registration-1.1.2.dist-info/WHEEL'
31431adding 'chimerax_registration-1.1.2.dist-info/top_level.txt'
31432adding 'chimerax_registration-1.1.2.dist-info/RECORD'
31433removing build\bdist.win-amd64\wheel
31434Distribution is in .\dist\ChimeraX_Registration-1.1.2-py3-none-any.whl
31435INFO:
31436
31437make sync
31438make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
31439cp -av dist/*.whl ../../../build/sync
31440'dist/chimerax_registration-1.1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_registration-1.1.2-py3-none-any.whl'
31441make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
31442make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/registration'
31443make -C remote_control build
31444make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
31445if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31446 echo "missing ChimeraX application's python"; exit 1; \
31447else \
31448 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31449fi
31450INFO:
31451Executing: devel build . exit true
31452C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31453!!
31454
31455 ********************************************************************************
31456 Please consider removing the following classifiers in favor of a SPDX license expression:
31457
31458 License :: Free for non-commercial use
31459
31460 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31461 ********************************************************************************
31462
31463!!
31464 self._finalize_license_expression()
31465running build
31466running build_py
31467creating build\lib\chimerax\remote_control
31468copying src\remotecmd.py -> build\lib\chimerax\remote_control
31469copying src\run.py -> build\lib\chimerax\remote_control
31470copying src\__init__.py -> build\lib\chimerax\remote_control
31471running bdist_wheel
31472installing to build\bdist.win-amd64\wheel
31473running install
31474running install_lib
31475creating build\bdist.win-amd64\wheel
31476creating build\bdist.win-amd64\wheel\chimerax
31477creating build\bdist.win-amd64\wheel\chimerax\remote_control
31478copying build\lib\chimerax\remote_control\remotecmd.py -> build\bdist.win-amd64\wheel\.\chimerax\remote_control
31479copying build\lib\chimerax\remote_control\run.py -> build\bdist.win-amd64\wheel\.\chimerax\remote_control
31480copying build\lib\chimerax\remote_control\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\remote_control
31481running install_egg_info
31482running egg_info
31483creating ChimeraX_RemoteControl.egg-info
31484writing ChimeraX_RemoteControl.egg-info\PKG-INFO
31485writing dependency_links to ChimeraX_RemoteControl.egg-info\dependency_links.txt
31486writing requirements to ChimeraX_RemoteControl.egg-info\requires.txt
31487writing top-level names to ChimeraX_RemoteControl.egg-info\top_level.txt
31488writing manifest file 'ChimeraX_RemoteControl.egg-info\SOURCES.txt'
31489reading manifest file 'ChimeraX_RemoteControl.egg-info\SOURCES.txt'
31490writing manifest file 'ChimeraX_RemoteControl.egg-info\SOURCES.txt'
31491Copying ChimeraX_RemoteControl.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RemoteControl-1.0-py3.11.egg-info
31492running install_scripts
31493creating build\bdist.win-amd64\wheel\chimerax_remotecontrol-1.0.dist-info\WHEEL
31494creating 'dist\chimerax_remotecontrol-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31495adding 'chimerax/remote_control/__init__.py'
31496adding 'chimerax/remote_control/remotecmd.py'
31497adding 'chimerax/remote_control/run.py'
31498adding 'chimerax_remotecontrol-1.0.dist-info/METADATA'
31499adding 'chimerax_remotecontrol-1.0.dist-info/WHEEL'
31500adding 'chimerax_remotecontrol-1.0.dist-info/top_level.txt'
31501adding 'chimerax_remotecontrol-1.0.dist-info/RECORD'
31502removing build\bdist.win-amd64\wheel
31503Distribution is in .\dist\ChimeraX_RemoteControl-1.0-py3-none-any.whl
31504INFO:
31505
31506make sync
31507make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
31508cp -av dist/*.whl ../../../build/sync
31509'dist/chimerax_remotecontrol-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_remotecontrol-1.0-py3-none-any.whl'
31510make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
31511make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/remote_control'
31512make -C render_by_attr build
31513make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
31514if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31515 echo "missing ChimeraX application's python"; exit 1; \
31516else \
31517 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31518fi
31519INFO:
31520Executing: devel build . exit true
31521C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31522!!
31523
31524 ********************************************************************************
31525 Please consider removing the following classifiers in favor of a SPDX license expression:
31526
31527 License :: Free for non-commercial use
31528
31529 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31530 ********************************************************************************
31531
31532!!
31533 self._finalize_license_expression()
31534running build
31535running build_py
31536creating build\lib\chimerax\render_by_attr
31537copying src\manager.py -> build\lib\chimerax\render_by_attr
31538copying src\tool.py -> build\lib\chimerax\render_by_attr
31539copying src\__init__.py -> build\lib\chimerax\render_by_attr
31540running bdist_wheel
31541installing to build\bdist.win-amd64\wheel
31542running install
31543running install_lib
31544creating build\bdist.win-amd64\wheel
31545creating build\bdist.win-amd64\wheel\chimerax
31546creating build\bdist.win-amd64\wheel\chimerax\render_by_attr
31547copying build\lib\chimerax\render_by_attr\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\render_by_attr
31548copying build\lib\chimerax\render_by_attr\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\render_by_attr
31549copying build\lib\chimerax\render_by_attr\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\render_by_attr
31550running install_egg_info
31551running egg_info
31552creating ChimeraX_RenderByAttr.egg-info
31553writing ChimeraX_RenderByAttr.egg-info\PKG-INFO
31554writing dependency_links to ChimeraX_RenderByAttr.egg-info\dependency_links.txt
31555writing requirements to ChimeraX_RenderByAttr.egg-info\requires.txt
31556writing top-level names to ChimeraX_RenderByAttr.egg-info\top_level.txt
31557writing manifest file 'ChimeraX_RenderByAttr.egg-info\SOURCES.txt'
31558reading manifest file 'ChimeraX_RenderByAttr.egg-info\SOURCES.txt'
31559writing manifest file 'ChimeraX_RenderByAttr.egg-info\SOURCES.txt'
31560Copying ChimeraX_RenderByAttr.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RenderByAttr-1.6.5-py3.11.egg-info
31561running install_scripts
31562creating build\bdist.win-amd64\wheel\chimerax_renderbyattr-1.6.5.dist-info\WHEEL
31563creating 'dist\chimerax_renderbyattr-1.6.5-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31564adding 'chimerax/render_by_attr/__init__.py'
31565adding 'chimerax/render_by_attr/manager.py'
31566adding 'chimerax/render_by_attr/tool.py'
31567adding 'chimerax_renderbyattr-1.6.5.dist-info/METADATA'
31568adding 'chimerax_renderbyattr-1.6.5.dist-info/WHEEL'
31569adding 'chimerax_renderbyattr-1.6.5.dist-info/top_level.txt'
31570adding 'chimerax_renderbyattr-1.6.5.dist-info/RECORD'
31571removing build\bdist.win-amd64\wheel
31572Distribution is in .\dist\ChimeraX_RenderByAttr-1.6.5-py3-none-any.whl
31573INFO:
31574
31575make sync
31576make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
31577cp -av dist/*.whl ../../../build/sync
31578'dist/chimerax_renderbyattr-1.6.5-py3-none-any.whl' -> '../../../build/sync/chimerax_renderbyattr-1.6.5-py3-none-any.whl'
31579make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
31580make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/render_by_attr'
31581make -C renumber_residues build
31582make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
31583if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31584 echo "missing ChimeraX application's python"; exit 1; \
31585else \
31586 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31587fi
31588INFO:
31589Executing: devel build . exit true
31590C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31591!!
31592
31593 ********************************************************************************
31594 Please consider removing the following classifiers in favor of a SPDX license expression:
31595
31596 License :: Free for non-commercial use
31597
31598 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31599 ********************************************************************************
31600
31601!!
31602 self._finalize_license_expression()
31603running build
31604running build_py
31605creating build\lib\chimerax\renumber_residues
31606copying src\cmd.py -> build\lib\chimerax\renumber_residues
31607copying src\tool.py -> build\lib\chimerax\renumber_residues
31608copying src\__init__.py -> build\lib\chimerax\renumber_residues
31609running bdist_wheel
31610installing to build\bdist.win-amd64\wheel
31611running install
31612running install_lib
31613creating build\bdist.win-amd64\wheel
31614creating build\bdist.win-amd64\wheel\chimerax
31615creating build\bdist.win-amd64\wheel\chimerax\renumber_residues
31616copying build\lib\chimerax\renumber_residues\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\renumber_residues
31617copying build\lib\chimerax\renumber_residues\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\renumber_residues
31618copying build\lib\chimerax\renumber_residues\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\renumber_residues
31619running install_egg_info
31620running egg_info
31621creating ChimeraX_RenumberResidues.egg-info
31622writing ChimeraX_RenumberResidues.egg-info\PKG-INFO
31623writing dependency_links to ChimeraX_RenumberResidues.egg-info\dependency_links.txt
31624writing requirements to ChimeraX_RenumberResidues.egg-info\requires.txt
31625writing top-level names to ChimeraX_RenumberResidues.egg-info\top_level.txt
31626writing manifest file 'ChimeraX_RenumberResidues.egg-info\SOURCES.txt'
31627reading manifest file 'ChimeraX_RenumberResidues.egg-info\SOURCES.txt'
31628writing manifest file 'ChimeraX_RenumberResidues.egg-info\SOURCES.txt'
31629Copying ChimeraX_RenumberResidues.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RenumberResidues-1.1-py3.11.egg-info
31630running install_scripts
31631creating build\bdist.win-amd64\wheel\chimerax_renumberresidues-1.1.dist-info\WHEEL
31632creating 'dist\chimerax_renumberresidues-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31633adding 'chimerax/renumber_residues/__init__.py'
31634adding 'chimerax/renumber_residues/cmd.py'
31635adding 'chimerax/renumber_residues/tool.py'
31636adding 'chimerax_renumberresidues-1.1.dist-info/METADATA'
31637adding 'chimerax_renumberresidues-1.1.dist-info/WHEEL'
31638adding 'chimerax_renumberresidues-1.1.dist-info/top_level.txt'
31639adding 'chimerax_renumberresidues-1.1.dist-info/RECORD'
31640removing build\bdist.win-amd64\wheel
31641Distribution is in .\dist\ChimeraX_RenumberResidues-1.1-py3-none-any.whl
31642INFO:
31643
31644make sync
31645make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
31646cp -av dist/*.whl ../../../build/sync
31647'dist/chimerax_renumberresidues-1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_renumberresidues-1.1-py3-none-any.whl'
31648make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
31649make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/renumber_residues'
31650make -C rest_server build
31651make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
31652# This creates a self-signed cert
31653# https://stackoverflow.com/questions/10175812/how-to-create-a-self-signed-certificate-with-openssl
31654# with both key and cert in the same file
31655openssl req -new -x509 -keyout src/server.pem -out src/server.pem \
31656 -days 365 -nodes -config ssl.conf
31657......+.+...+..+.......+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*.........+..+...............+....+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*....+.......+......+........+.+...........+...+.......+........+.+.....+.+..............+.+...+..+...................+......+...+.....+.+.....+...+.............+.....+...+.........+...+.......+...........+....+....................+...+.......+...+..+.+......+.........+......+........+..........+..+.+............+..+.+.....+...+......+...+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
31658.+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*...+.............+...+.....+.......+.........+.....+.........+......+......+.........+.+.........+...........+....+......+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*....+......+...+.....+.+........+.+..+....+...+..+.+........+.+...........+.......+......+......+...+.....+...+.......+........+...+......+.+..+.+..............+.......+...+...+..+......+......+......+.......+...+.....+....+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
31659-----
31660if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31661 echo "missing ChimeraX application's python"; exit 1; \
31662else \
31663 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31664fi
31665INFO:
31666Executing: devel build . exit true
31667C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31668!!
31669
31670 ********************************************************************************
31671 Please consider removing the following classifiers in favor of a SPDX license expression:
31672
31673 License :: Free for non-commercial use
31674
31675 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31676 ********************************************************************************
31677
31678!!
31679 self._finalize_license_expression()
31680running build
31681running build_py
31682creating build\lib\chimerax\rest_server
31683copying src\cgi.py -> build\lib\chimerax\rest_server
31684copying src\cmd.py -> build\lib\chimerax\rest_server
31685copying src\server.py -> build\lib\chimerax\rest_server
31686copying src\__init__.py -> build\lib\chimerax\rest_server
31687creating build\lib\chimerax\rest_server\static
31688copying src\static\cmdline.html -> build\lib\chimerax\rest_server\static
31689copying src\static\favicon.ico -> build\lib\chimerax\rest_server\static
31690copying src\server.pem -> build\lib\chimerax\rest_server
31691running bdist_wheel
31692installing to build\bdist.win-amd64\wheel
31693running install
31694running install_lib
31695creating build\bdist.win-amd64\wheel
31696creating build\bdist.win-amd64\wheel\chimerax
31697creating build\bdist.win-amd64\wheel\chimerax\rest_server
31698copying build\lib\chimerax\rest_server\cgi.py -> build\bdist.win-amd64\wheel\.\chimerax\rest_server
31699copying build\lib\chimerax\rest_server\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\rest_server
31700copying build\lib\chimerax\rest_server\server.pem -> build\bdist.win-amd64\wheel\.\chimerax\rest_server
31701copying build\lib\chimerax\rest_server\server.py -> build\bdist.win-amd64\wheel\.\chimerax\rest_server
31702creating build\bdist.win-amd64\wheel\chimerax\rest_server\static
31703copying build\lib\chimerax\rest_server\static\cmdline.html -> build\bdist.win-amd64\wheel\.\chimerax\rest_server\static
31704copying build\lib\chimerax\rest_server\static\favicon.ico -> build\bdist.win-amd64\wheel\.\chimerax\rest_server\static
31705copying build\lib\chimerax\rest_server\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\rest_server
31706running install_egg_info
31707running egg_info
31708creating ChimeraX_RestServer.egg-info
31709writing ChimeraX_RestServer.egg-info\PKG-INFO
31710writing dependency_links to ChimeraX_RestServer.egg-info\dependency_links.txt
31711writing requirements to ChimeraX_RestServer.egg-info\requires.txt
31712writing top-level names to ChimeraX_RestServer.egg-info\top_level.txt
31713writing manifest file 'ChimeraX_RestServer.egg-info\SOURCES.txt'
31714reading manifest file 'ChimeraX_RestServer.egg-info\SOURCES.txt'
31715writing manifest file 'ChimeraX_RestServer.egg-info\SOURCES.txt'
31716Copying ChimeraX_RestServer.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RestServer-1.3.1-py3.11.egg-info
31717running install_scripts
31718creating build\bdist.win-amd64\wheel\chimerax_restserver-1.3.1.dist-info\WHEEL
31719creating 'dist\chimerax_restserver-1.3.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31720adding 'chimerax/rest_server/__init__.py'
31721adding 'chimerax/rest_server/cgi.py'
31722adding 'chimerax/rest_server/cmd.py'
31723adding 'chimerax/rest_server/server.pem'
31724adding 'chimerax/rest_server/server.py'
31725adding 'chimerax/rest_server/static/cmdline.html'
31726adding 'chimerax/rest_server/static/favicon.ico'
31727adding 'chimerax_restserver-1.3.1.dist-info/METADATA'
31728adding 'chimerax_restserver-1.3.1.dist-info/WHEEL'
31729adding 'chimerax_restserver-1.3.1.dist-info/top_level.txt'
31730adding 'chimerax_restserver-1.3.1.dist-info/RECORD'
31731removing build\bdist.win-amd64\wheel
31732Distribution is in .\dist\ChimeraX_RestServer-1.3.1-py3-none-any.whl
31733INFO:
31734
31735make sync
31736make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
31737cp -av dist/*.whl ../../../build/sync
31738'dist/chimerax_restserver-1.3.1-py3-none-any.whl' -> '../../../build/sync/chimerax_restserver-1.3.1-py3-none-any.whl'
31739make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
31740make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rest_server'
31741make -C residue_fit build
31742make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
31743if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31744 echo "missing ChimeraX application's python"; exit 1; \
31745else \
31746 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31747fi
31748INFO:
31749Executing: devel build . exit true
31750C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31751!!
31752
31753 ********************************************************************************
31754 Please consider removing the following classifiers in favor of a SPDX license expression:
31755
31756 License :: Free for non-commercial use
31757
31758 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31759 ********************************************************************************
31760
31761!!
31762 self._finalize_license_expression()
31763running build
31764running build_py
31765creating build\lib\chimerax\residue_fit
31766copying src\cmd.py -> build\lib\chimerax\residue_fit
31767copying src\tool.py -> build\lib\chimerax\residue_fit
31768copying src\__init__.py -> build\lib\chimerax\residue_fit
31769running bdist_wheel
31770installing to build\bdist.win-amd64\wheel
31771running install
31772running install_lib
31773creating build\bdist.win-amd64\wheel
31774creating build\bdist.win-amd64\wheel\chimerax
31775creating build\bdist.win-amd64\wheel\chimerax\residue_fit
31776copying build\lib\chimerax\residue_fit\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\residue_fit
31777copying build\lib\chimerax\residue_fit\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\residue_fit
31778copying build\lib\chimerax\residue_fit\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\residue_fit
31779running install_egg_info
31780running egg_info
31781creating ChimeraX_ResidueFit.egg-info
31782writing ChimeraX_ResidueFit.egg-info\PKG-INFO
31783writing dependency_links to ChimeraX_ResidueFit.egg-info\dependency_links.txt
31784writing requirements to ChimeraX_ResidueFit.egg-info\requires.txt
31785writing top-level names to ChimeraX_ResidueFit.egg-info\top_level.txt
31786writing manifest file 'ChimeraX_ResidueFit.egg-info\SOURCES.txt'
31787reading manifest file 'ChimeraX_ResidueFit.egg-info\SOURCES.txt'
31788writing manifest file 'ChimeraX_ResidueFit.egg-info\SOURCES.txt'
31789Copying ChimeraX_ResidueFit.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ResidueFit-1.0.1-py3.11.egg-info
31790running install_scripts
31791creating build\bdist.win-amd64\wheel\chimerax_residuefit-1.0.1.dist-info\WHEEL
31792creating 'dist\chimerax_residuefit-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31793adding 'chimerax/residue_fit/__init__.py'
31794adding 'chimerax/residue_fit/cmd.py'
31795adding 'chimerax/residue_fit/tool.py'
31796adding 'chimerax_residuefit-1.0.1.dist-info/METADATA'
31797adding 'chimerax_residuefit-1.0.1.dist-info/WHEEL'
31798adding 'chimerax_residuefit-1.0.1.dist-info/top_level.txt'
31799adding 'chimerax_residuefit-1.0.1.dist-info/RECORD'
31800removing build\bdist.win-amd64\wheel
31801Distribution is in .\dist\ChimeraX_ResidueFit-1.0.1-py3-none-any.whl
31802INFO:
31803
31804make sync
31805make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
31806cp -av dist/*.whl ../../../build/sync
31807'dist/chimerax_residuefit-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_residuefit-1.0.1-py3-none-any.whl'
31808make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
31809make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/residue_fit'
31810make -C rna_layout build
31811make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
31812if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31813 echo "missing ChimeraX application's python"; exit 1; \
31814else \
31815 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31816fi
31817INFO:
31818Executing: devel build . exit true
31819C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31820!!
31821
31822 ********************************************************************************
31823 Please consider removing the following classifiers in favor of a SPDX license expression:
31824
31825 License :: Free for non-commercial use
31826
31827 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31828 ********************************************************************************
31829
31830!!
31831 self._finalize_license_expression()
31832running build
31833running build_py
31834creating build\lib\chimerax\rna_layout
31835copying src\rna_command.py -> build\lib\chimerax\rna_layout
31836copying src\rna_layout.py -> build\lib\chimerax\rna_layout
31837copying src\__init__.py -> build\lib\chimerax\rna_layout
31838copying src\rna_templates_6pj6.cif -> build\lib\chimerax\rna_layout
31839running bdist_wheel
31840installing to build\bdist.win-amd64\wheel
31841running install
31842running install_lib
31843creating build\bdist.win-amd64\wheel
31844creating build\bdist.win-amd64\wheel\chimerax
31845creating build\bdist.win-amd64\wheel\chimerax\rna_layout
31846copying build\lib\chimerax\rna_layout\rna_command.py -> build\bdist.win-amd64\wheel\.\chimerax\rna_layout
31847copying build\lib\chimerax\rna_layout\rna_layout.py -> build\bdist.win-amd64\wheel\.\chimerax\rna_layout
31848copying build\lib\chimerax\rna_layout\rna_templates_6pj6.cif -> build\bdist.win-amd64\wheel\.\chimerax\rna_layout
31849copying build\lib\chimerax\rna_layout\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\rna_layout
31850running install_egg_info
31851running egg_info
31852creating ChimeraX_RNALayout.egg-info
31853writing ChimeraX_RNALayout.egg-info\PKG-INFO
31854writing dependency_links to ChimeraX_RNALayout.egg-info\dependency_links.txt
31855writing requirements to ChimeraX_RNALayout.egg-info\requires.txt
31856writing top-level names to ChimeraX_RNALayout.egg-info\top_level.txt
31857writing manifest file 'ChimeraX_RNALayout.egg-info\SOURCES.txt'
31858reading manifest file 'ChimeraX_RNALayout.egg-info\SOURCES.txt'
31859writing manifest file 'ChimeraX_RNALayout.egg-info\SOURCES.txt'
31860Copying ChimeraX_RNALayout.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RNALayout-1.0-py3.11.egg-info
31861running install_scripts
31862creating build\bdist.win-amd64\wheel\chimerax_rnalayout-1.0.dist-info\WHEEL
31863creating 'dist\chimerax_rnalayout-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31864adding 'chimerax/rna_layout/__init__.py'
31865adding 'chimerax/rna_layout/rna_command.py'
31866adding 'chimerax/rna_layout/rna_layout.py'
31867adding 'chimerax/rna_layout/rna_templates_6pj6.cif'
31868adding 'chimerax_rnalayout-1.0.dist-info/METADATA'
31869adding 'chimerax_rnalayout-1.0.dist-info/WHEEL'
31870adding 'chimerax_rnalayout-1.0.dist-info/top_level.txt'
31871adding 'chimerax_rnalayout-1.0.dist-info/RECORD'
31872removing build\bdist.win-amd64\wheel
31873Distribution is in .\dist\ChimeraX_RNALayout-1.0-py3-none-any.whl
31874INFO:
31875
31876make sync
31877make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
31878cp -av dist/*.whl ../../../build/sync
31879'dist/chimerax_rnalayout-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_rnalayout-1.0-py3-none-any.whl'
31880make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
31881make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rna_layout'
31882make -C rotamers build
31883make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
31884if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
31885 echo "missing ChimeraX application's python"; exit 1; \
31886else \
31887 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31888fi
31889INFO:
31890Executing: devel build . exit true
31891C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31892!!
31893
31894 ********************************************************************************
31895 Please consider removing the following classifiers in favor of a SPDX license expression:
31896
31897 License :: Free for non-commercial use
31898
31899 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31900 ********************************************************************************
31901
31902!!
31903 self._finalize_license_expression()
31904running build
31905running build_py
31906creating build\lib\chimerax\rotamers
31907copying src\manager.py -> build\lib\chimerax\rotamers
31908copying src\rot_lib.py -> build\lib\chimerax\rotamers
31909copying src\__init__.py -> build\lib\chimerax\rotamers
31910running bdist_wheel
31911installing to build\bdist.win-amd64\wheel
31912running install
31913running install_lib
31914creating build\bdist.win-amd64\wheel
31915creating build\bdist.win-amd64\wheel\chimerax
31916creating build\bdist.win-amd64\wheel\chimerax\rotamers
31917copying build\lib\chimerax\rotamers\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\rotamers
31918copying build\lib\chimerax\rotamers\rot_lib.py -> build\bdist.win-amd64\wheel\.\chimerax\rotamers
31919copying build\lib\chimerax\rotamers\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\rotamers
31920running install_egg_info
31921running egg_info
31922creating ChimeraX_RotamerLibMgr.egg-info
31923writing ChimeraX_RotamerLibMgr.egg-info\PKG-INFO
31924writing dependency_links to ChimeraX_RotamerLibMgr.egg-info\dependency_links.txt
31925writing requirements to ChimeraX_RotamerLibMgr.egg-info\requires.txt
31926writing top-level names to ChimeraX_RotamerLibMgr.egg-info\top_level.txt
31927writing manifest file 'ChimeraX_RotamerLibMgr.egg-info\SOURCES.txt'
31928reading manifest file 'ChimeraX_RotamerLibMgr.egg-info\SOURCES.txt'
31929writing manifest file 'ChimeraX_RotamerLibMgr.egg-info\SOURCES.txt'
31930Copying ChimeraX_RotamerLibMgr.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RotamerLibMgr-4.0-py3.11.egg-info
31931running install_scripts
31932creating build\bdist.win-amd64\wheel\chimerax_rotamerlibmgr-4.0.dist-info\WHEEL
31933creating 'dist\chimerax_rotamerlibmgr-4.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
31934adding 'chimerax/rotamers/__init__.py'
31935adding 'chimerax/rotamers/manager.py'
31936adding 'chimerax/rotamers/rot_lib.py'
31937adding 'chimerax_rotamerlibmgr-4.0.dist-info/METADATA'
31938adding 'chimerax_rotamerlibmgr-4.0.dist-info/WHEEL'
31939adding 'chimerax_rotamerlibmgr-4.0.dist-info/top_level.txt'
31940adding 'chimerax_rotamerlibmgr-4.0.dist-info/RECORD'
31941removing build\bdist.win-amd64\wheel
31942Distribution is in .\dist\ChimeraX_RotamerLibMgr-4.0-py3-none-any.whl
31943INFO:
31944
31945make sync
31946make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
31947cp -av dist/*.whl ../../../build/sync
31948'dist/chimerax_rotamerlibmgr-4.0-py3-none-any.whl' -> '../../../build/sync/chimerax_rotamerlibmgr-4.0-py3-none-any.whl'
31949make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
31950make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamers'
31951make -C rotamer_libs build
31952make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs'
31953make -C Dunbrack build
31954make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
31955if [ -z "../../../../ChimeraX.app/bin/python.exe" ]; then \
31956 echo "missing ChimeraX application's python"; exit 1; \
31957else \
31958 PYTHONNOUSERSITE=1 ../../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
31959fi
31960INFO:
31961Executing: devel build . exit true
31962C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
31963!!
31964
31965 ********************************************************************************
31966 Please consider removing the following classifiers in favor of a SPDX license expression:
31967
31968 License :: Free for non-commercial use
31969
31970 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
31971 ********************************************************************************
31972
31973!!
31974 self._finalize_license_expression()
31975running build
31976running build_py
31977creating build\lib\chimerax\dunbrack_rotamer_lib
31978copying src\lib.py -> build\lib\chimerax\dunbrack_rotamer_lib
31979copying src\__init__.py -> build\lib\chimerax\dunbrack_rotamer_lib
31980copying src\dependentRotamerData.zip -> build\lib\chimerax\dunbrack_rotamer_lib
31981copying src\independentRotamerData2002.zip -> build\lib\chimerax\dunbrack_rotamer_lib
31982running bdist_wheel
31983installing to build\bdist.win-amd64\wheel
31984running install
31985running install_lib
31986creating build\bdist.win-amd64\wheel
31987creating build\bdist.win-amd64\wheel\chimerax
31988creating build\bdist.win-amd64\wheel\chimerax\dunbrack_rotamer_lib
31989copying build\lib\chimerax\dunbrack_rotamer_lib\dependentRotamerData.zip -> build\bdist.win-amd64\wheel\.\chimerax\dunbrack_rotamer_lib
31990copying build\lib\chimerax\dunbrack_rotamer_lib\independentRotamerData2002.zip -> build\bdist.win-amd64\wheel\.\chimerax\dunbrack_rotamer_lib
31991copying build\lib\chimerax\dunbrack_rotamer_lib\lib.py -> build\bdist.win-amd64\wheel\.\chimerax\dunbrack_rotamer_lib
31992copying build\lib\chimerax\dunbrack_rotamer_lib\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dunbrack_rotamer_lib
31993running install_egg_info
31994running egg_info
31995creating ChimeraX_RotamerLibsDunbrack.egg-info
31996writing ChimeraX_RotamerLibsDunbrack.egg-info\PKG-INFO
31997writing dependency_links to ChimeraX_RotamerLibsDunbrack.egg-info\dependency_links.txt
31998writing requirements to ChimeraX_RotamerLibsDunbrack.egg-info\requires.txt
31999writing top-level names to ChimeraX_RotamerLibsDunbrack.egg-info\top_level.txt
32000writing manifest file 'ChimeraX_RotamerLibsDunbrack.egg-info\SOURCES.txt'
32001reading manifest file 'ChimeraX_RotamerLibsDunbrack.egg-info\SOURCES.txt'
32002writing manifest file 'ChimeraX_RotamerLibsDunbrack.egg-info\SOURCES.txt'
32003Copying ChimeraX_RotamerLibsDunbrack.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RotamerLibsDunbrack-2.0-py3.11.egg-info
32004running install_scripts
32005creating build\bdist.win-amd64\wheel\chimerax_rotamerlibsdunbrack-2.0.dist-info\WHEEL
32006creating 'dist\chimerax_rotamerlibsdunbrack-2.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32007adding 'chimerax/dunbrack_rotamer_lib/__init__.py'
32008adding 'chimerax/dunbrack_rotamer_lib/dependentRotamerData.zip'
32009adding 'chimerax/dunbrack_rotamer_lib/independentRotamerData2002.zip'
32010adding 'chimerax/dunbrack_rotamer_lib/lib.py'
32011adding 'chimerax_rotamerlibsdunbrack-2.0.dist-info/METADATA'
32012adding 'chimerax_rotamerlibsdunbrack-2.0.dist-info/WHEEL'
32013adding 'chimerax_rotamerlibsdunbrack-2.0.dist-info/top_level.txt'
32014adding 'chimerax_rotamerlibsdunbrack-2.0.dist-info/RECORD'
32015removing build\bdist.win-amd64\wheel
32016Distribution is in .\dist\ChimeraX_RotamerLibsDunbrack-2.0-py3-none-any.whl
32017INFO:
32018
32019make sync
32020make[7]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
32021cp -av dist/*.whl ../../../../build/sync
32022'dist/chimerax_rotamerlibsdunbrack-2.0-py3-none-any.whl' -> '../../../../build/sync/chimerax_rotamerlibsdunbrack-2.0-py3-none-any.whl'
32023make[7]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
32024make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dunbrack'
32025make -C Dynameomics build
32026make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
32027if [ -z "../../../../ChimeraX.app/bin/python.exe" ]; then \
32028 echo "missing ChimeraX application's python"; exit 1; \
32029else \
32030 PYTHONNOUSERSITE=1 ../../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32031fi
32032INFO:
32033Executing: devel build . exit true
32034C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32035!!
32036
32037 ********************************************************************************
32038 Please consider removing the following classifiers in favor of a SPDX license expression:
32039
32040 License :: Free for non-commercial use
32041
32042 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32043 ********************************************************************************
32044
32045!!
32046 self._finalize_license_expression()
32047running build
32048running build_py
32049creating build\lib\chimerax\dynameomics_rotamer_lib
32050copying src\lib.py -> build\lib\chimerax\dynameomics_rotamer_lib
32051copying src\__init__.py -> build\lib\chimerax\dynameomics_rotamer_lib
32052copying src\rotamerData.zip -> build\lib\chimerax\dynameomics_rotamer_lib
32053running bdist_wheel
32054installing to build\bdist.win-amd64\wheel
32055running install
32056running install_lib
32057creating build\bdist.win-amd64\wheel
32058creating build\bdist.win-amd64\wheel\chimerax
32059creating build\bdist.win-amd64\wheel\chimerax\dynameomics_rotamer_lib
32060copying build\lib\chimerax\dynameomics_rotamer_lib\lib.py -> build\bdist.win-amd64\wheel\.\chimerax\dynameomics_rotamer_lib
32061copying build\lib\chimerax\dynameomics_rotamer_lib\rotamerData.zip -> build\bdist.win-amd64\wheel\.\chimerax\dynameomics_rotamer_lib
32062copying build\lib\chimerax\dynameomics_rotamer_lib\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\dynameomics_rotamer_lib
32063running install_egg_info
32064running egg_info
32065creating ChimeraX_RotamerLibsDynameomics.egg-info
32066writing ChimeraX_RotamerLibsDynameomics.egg-info\PKG-INFO
32067writing dependency_links to ChimeraX_RotamerLibsDynameomics.egg-info\dependency_links.txt
32068writing requirements to ChimeraX_RotamerLibsDynameomics.egg-info\requires.txt
32069writing top-level names to ChimeraX_RotamerLibsDynameomics.egg-info\top_level.txt
32070writing manifest file 'ChimeraX_RotamerLibsDynameomics.egg-info\SOURCES.txt'
32071reading manifest file 'ChimeraX_RotamerLibsDynameomics.egg-info\SOURCES.txt'
32072writing manifest file 'ChimeraX_RotamerLibsDynameomics.egg-info\SOURCES.txt'
32073Copying ChimeraX_RotamerLibsDynameomics.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RotamerLibsDynameomics-2.0-py3.11.egg-info
32074running install_scripts
32075creating build\bdist.win-amd64\wheel\chimerax_rotamerlibsdynameomics-2.0.dist-info\WHEEL
32076creating 'dist\chimerax_rotamerlibsdynameomics-2.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32077adding 'chimerax/dynameomics_rotamer_lib/__init__.py'
32078adding 'chimerax/dynameomics_rotamer_lib/lib.py'
32079adding 'chimerax/dynameomics_rotamer_lib/rotamerData.zip'
32080adding 'chimerax_rotamerlibsdynameomics-2.0.dist-info/METADATA'
32081adding 'chimerax_rotamerlibsdynameomics-2.0.dist-info/WHEEL'
32082adding 'chimerax_rotamerlibsdynameomics-2.0.dist-info/top_level.txt'
32083adding 'chimerax_rotamerlibsdynameomics-2.0.dist-info/RECORD'
32084removing build\bdist.win-amd64\wheel
32085Distribution is in .\dist\ChimeraX_RotamerLibsDynameomics-2.0-py3-none-any.whl
32086INFO:
32087
32088make sync
32089make[7]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
32090cp -av dist/*.whl ../../../../build/sync
32091'dist/chimerax_rotamerlibsdynameomics-2.0-py3-none-any.whl' -> '../../../../build/sync/chimerax_rotamerlibsdynameomics-2.0-py3-none-any.whl'
32092make[7]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
32093make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Dynameomics'
32094make -C Richardson build
32095make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
32096if [ -z "../../../../ChimeraX.app/bin/python.exe" ]; then \
32097 echo "missing ChimeraX application's python"; exit 1; \
32098else \
32099 PYTHONNOUSERSITE=1 ../../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32100fi
32101INFO:
32102Executing: devel build . exit true
32103C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32104!!
32105
32106 ********************************************************************************
32107 Please consider removing the following classifiers in favor of a SPDX license expression:
32108
32109 License :: Free for non-commercial use
32110
32111 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32112 ********************************************************************************
32113
32114!!
32115 self._finalize_license_expression()
32116running build
32117running build_py
32118creating build\lib\chimerax\richardson_rotamer_lib
32119copying src\lib.py -> build\lib\chimerax\richardson_rotamer_lib
32120copying src\__init__.py -> build\lib\chimerax\richardson_rotamer_lib
32121copying src\common.zip -> build\lib\chimerax\richardson_rotamer_lib
32122copying src\mode.zip -> build\lib\chimerax\richardson_rotamer_lib
32123running bdist_wheel
32124installing to build\bdist.win-amd64\wheel
32125running install
32126running install_lib
32127creating build\bdist.win-amd64\wheel
32128creating build\bdist.win-amd64\wheel\chimerax
32129creating build\bdist.win-amd64\wheel\chimerax\richardson_rotamer_lib
32130copying build\lib\chimerax\richardson_rotamer_lib\common.zip -> build\bdist.win-amd64\wheel\.\chimerax\richardson_rotamer_lib
32131copying build\lib\chimerax\richardson_rotamer_lib\lib.py -> build\bdist.win-amd64\wheel\.\chimerax\richardson_rotamer_lib
32132copying build\lib\chimerax\richardson_rotamer_lib\mode.zip -> build\bdist.win-amd64\wheel\.\chimerax\richardson_rotamer_lib
32133copying build\lib\chimerax\richardson_rotamer_lib\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\richardson_rotamer_lib
32134running install_egg_info
32135running egg_info
32136creating ChimeraX_RotamerLibsRichardson.egg-info
32137writing ChimeraX_RotamerLibsRichardson.egg-info\PKG-INFO
32138writing dependency_links to ChimeraX_RotamerLibsRichardson.egg-info\dependency_links.txt
32139writing requirements to ChimeraX_RotamerLibsRichardson.egg-info\requires.txt
32140writing top-level names to ChimeraX_RotamerLibsRichardson.egg-info\top_level.txt
32141writing manifest file 'ChimeraX_RotamerLibsRichardson.egg-info\SOURCES.txt'
32142reading manifest file 'ChimeraX_RotamerLibsRichardson.egg-info\SOURCES.txt'
32143writing manifest file 'ChimeraX_RotamerLibsRichardson.egg-info\SOURCES.txt'
32144Copying ChimeraX_RotamerLibsRichardson.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_RotamerLibsRichardson-2.0-py3.11.egg-info
32145running install_scripts
32146creating build\bdist.win-amd64\wheel\chimerax_rotamerlibsrichardson-2.0.dist-info\WHEEL
32147creating 'dist\chimerax_rotamerlibsrichardson-2.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32148adding 'chimerax/richardson_rotamer_lib/__init__.py'
32149adding 'chimerax/richardson_rotamer_lib/common.zip'
32150adding 'chimerax/richardson_rotamer_lib/lib.py'
32151adding 'chimerax/richardson_rotamer_lib/mode.zip'
32152adding 'chimerax_rotamerlibsrichardson-2.0.dist-info/METADATA'
32153adding 'chimerax_rotamerlibsrichardson-2.0.dist-info/WHEEL'
32154adding 'chimerax_rotamerlibsrichardson-2.0.dist-info/top_level.txt'
32155adding 'chimerax_rotamerlibsrichardson-2.0.dist-info/RECORD'
32156removing build\bdist.win-amd64\wheel
32157Distribution is in .\dist\ChimeraX_RotamerLibsRichardson-2.0-py3-none-any.whl
32158INFO:
32159
32160make sync
32161make[7]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
32162cp -av dist/*.whl ../../../../build/sync
32163'dist/chimerax_rotamerlibsrichardson-2.0-py3-none-any.whl' -> '../../../../build/sync/chimerax_rotamerlibsrichardson-2.0-py3-none-any.whl'
32164make[7]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
32165make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs/Richardson'
32166make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/rotamer_libs'
32167make -C save_command build
32168make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
32169if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
32170 echo "missing ChimeraX application's python"; exit 1; \
32171else \
32172 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32173fi
32174INFO:
32175Executing: devel build . exit true
32176C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32177!!
32178
32179 ********************************************************************************
32180 Please consider removing the following classifiers in favor of a SPDX license expression:
32181
32182 License :: Free for non-commercial use
32183
32184 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32185 ********************************************************************************
32186
32187!!
32188 self._finalize_license_expression()
32189running build
32190running build_py
32191creating build\lib\chimerax\save_command
32192copying src\cmd.py -> build\lib\chimerax\save_command
32193copying src\dialog.py -> build\lib\chimerax\save_command
32194copying src\manager.py -> build\lib\chimerax\save_command
32195copying src\widgets.py -> build\lib\chimerax\save_command
32196copying src\__init__.py -> build\lib\chimerax\save_command
32197running bdist_wheel
32198installing to build\bdist.win-amd64\wheel
32199running install
32200running install_lib
32201creating build\bdist.win-amd64\wheel
32202creating build\bdist.win-amd64\wheel\chimerax
32203creating build\bdist.win-amd64\wheel\chimerax\save_command
32204copying build\lib\chimerax\save_command\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\save_command
32205copying build\lib\chimerax\save_command\dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\save_command
32206copying build\lib\chimerax\save_command\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\save_command
32207copying build\lib\chimerax\save_command\widgets.py -> build\bdist.win-amd64\wheel\.\chimerax\save_command
32208copying build\lib\chimerax\save_command\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\save_command
32209running install_egg_info
32210running egg_info
32211creating ChimeraX_SaveCommand.egg-info
32212writing ChimeraX_SaveCommand.egg-info\PKG-INFO
32213writing dependency_links to ChimeraX_SaveCommand.egg-info\dependency_links.txt
32214writing requirements to ChimeraX_SaveCommand.egg-info\requires.txt
32215writing top-level names to ChimeraX_SaveCommand.egg-info\top_level.txt
32216writing manifest file 'ChimeraX_SaveCommand.egg-info\SOURCES.txt'
32217reading manifest file 'ChimeraX_SaveCommand.egg-info\SOURCES.txt'
32218writing manifest file 'ChimeraX_SaveCommand.egg-info\SOURCES.txt'
32219Copying ChimeraX_SaveCommand.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SaveCommand-1.5.2-py3.11.egg-info
32220running install_scripts
32221creating build\bdist.win-amd64\wheel\chimerax_savecommand-1.5.2.dist-info\WHEEL
32222creating 'dist\chimerax_savecommand-1.5.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32223adding 'chimerax/save_command/__init__.py'
32224adding 'chimerax/save_command/cmd.py'
32225adding 'chimerax/save_command/dialog.py'
32226adding 'chimerax/save_command/manager.py'
32227adding 'chimerax/save_command/widgets.py'
32228adding 'chimerax_savecommand-1.5.2.dist-info/METADATA'
32229adding 'chimerax_savecommand-1.5.2.dist-info/WHEEL'
32230adding 'chimerax_savecommand-1.5.2.dist-info/top_level.txt'
32231adding 'chimerax_savecommand-1.5.2.dist-info/RECORD'
32232removing build\bdist.win-amd64\wheel
32233Distribution is in .\dist\ChimeraX_SaveCommand-1.5.2-py3-none-any.whl
32234INFO:
32235
32236make sync
32237make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
32238cp -av dist/*.whl ../../../build/sync
32239'dist/chimerax_savecommand-1.5.2-py3-none-any.whl' -> '../../../build/sync/chimerax_savecommand-1.5.2-py3-none-any.whl'
32240make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
32241make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/save_command'
32242make -C scenes build
32243make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
32244if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
32245 echo "missing ChimeraX application's python"; exit 1; \
32246else \
32247 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32248fi
32249INFO:
32250Executing: devel build . exit true
32251C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
32252!!
32253
32254 ********************************************************************************
32255 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
32256
32257 By 2026-Feb-18, you need to update your project and remove deprecated calls
32258 or your builds will no longer be supported.
32259
32260 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32261 ********************************************************************************
32262
32263!!
32264 corresp(dist, value, root_dir)
32265running build
32266running build_py
32267creating build\lib\chimerax\scenes
32268copying src\cmd.py -> build\lib\chimerax\scenes
32269copying src\manager.py -> build\lib\chimerax\scenes
32270copying src\scene.py -> build\lib\chimerax\scenes
32271copying src\tool.py -> build\lib\chimerax\scenes
32272copying src\triggers.py -> build\lib\chimerax\scenes
32273copying src\__init__.py -> build\lib\chimerax\scenes
32274running bdist_wheel
32275installing to build\bdist.win-amd64\wheel
32276running install
32277running install_lib
32278creating build\bdist.win-amd64\wheel
32279creating build\bdist.win-amd64\wheel\chimerax
32280creating build\bdist.win-amd64\wheel\chimerax\scenes
32281copying build\lib\chimerax\scenes\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\scenes
32282copying build\lib\chimerax\scenes\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\scenes
32283copying build\lib\chimerax\scenes\scene.py -> build\bdist.win-amd64\wheel\.\chimerax\scenes
32284copying build\lib\chimerax\scenes\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\scenes
32285copying build\lib\chimerax\scenes\triggers.py -> build\bdist.win-amd64\wheel\.\chimerax\scenes
32286copying build\lib\chimerax\scenes\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\scenes
32287running install_egg_info
32288running egg_info
32289creating ChimeraX_Scenes.egg-info
32290writing ChimeraX_Scenes.egg-info\PKG-INFO
32291writing dependency_links to ChimeraX_Scenes.egg-info\dependency_links.txt
32292writing requirements to ChimeraX_Scenes.egg-info\requires.txt
32293writing top-level names to ChimeraX_Scenes.egg-info\top_level.txt
32294writing manifest file 'ChimeraX_Scenes.egg-info\SOURCES.txt'
32295reading manifest file 'ChimeraX_Scenes.egg-info\SOURCES.txt'
32296writing manifest file 'ChimeraX_Scenes.egg-info\SOURCES.txt'
32297Copying ChimeraX_Scenes.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Scenes-0.2.2-py3.11.egg-info
32298running install_scripts
32299creating build\bdist.win-amd64\wheel\chimerax_scenes-0.2.2.dist-info\WHEEL
32300creating 'dist\chimerax_scenes-0.2.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32301adding 'chimerax/scenes/__init__.py'
32302adding 'chimerax/scenes/cmd.py'
32303adding 'chimerax/scenes/manager.py'
32304adding 'chimerax/scenes/scene.py'
32305adding 'chimerax/scenes/tool.py'
32306adding 'chimerax/scenes/triggers.py'
32307adding 'chimerax_scenes-0.2.2.dist-info/METADATA'
32308adding 'chimerax_scenes-0.2.2.dist-info/WHEEL'
32309adding 'chimerax_scenes-0.2.2.dist-info/top_level.txt'
32310adding 'chimerax_scenes-0.2.2.dist-info/RECORD'
32311removing build\bdist.win-amd64\wheel
32312Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\scenes\dist\chimerax_scenes-0.2.2-py3-none-any.whl
32313INFO:
32314
32315make sync
32316make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
32317cp -av dist/*.whl ../../../build/sync
32318'dist/chimerax_scenes-0.2.2-py3-none-any.whl' -> '../../../build/sync/chimerax_scenes-0.2.2-py3-none-any.whl'
32319make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
32320make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scenes'
32321make -C scheme_mgr build
32322make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
32323if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
32324 echo "missing ChimeraX application's python"; exit 1; \
32325else \
32326 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32327fi
32328INFO:
32329Executing: devel build . exit true
32330C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32331!!
32332
32333 ********************************************************************************
32334 Please consider removing the following classifiers in favor of a SPDX license expression:
32335
32336 License :: Free for non-commercial use
32337
32338 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32339 ********************************************************************************
32340
32341!!
32342 self._finalize_license_expression()
32343running build
32344running build_py
32345creating build\lib\chimerax\scheme_mgr
32346copying src\manager.py -> build\lib\chimerax\scheme_mgr
32347copying src\__init__.py -> build\lib\chimerax\scheme_mgr
32348running bdist_wheel
32349installing to build\bdist.win-amd64\wheel
32350running install
32351running install_lib
32352creating build\bdist.win-amd64\wheel
32353creating build\bdist.win-amd64\wheel\chimerax
32354creating build\bdist.win-amd64\wheel\chimerax\scheme_mgr
32355copying build\lib\chimerax\scheme_mgr\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\scheme_mgr
32356copying build\lib\chimerax\scheme_mgr\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\scheme_mgr
32357running install_egg_info
32358running egg_info
32359creating ChimeraX_SchemeMgr.egg-info
32360writing ChimeraX_SchemeMgr.egg-info\PKG-INFO
32361writing dependency_links to ChimeraX_SchemeMgr.egg-info\dependency_links.txt
32362writing requirements to ChimeraX_SchemeMgr.egg-info\requires.txt
32363writing top-level names to ChimeraX_SchemeMgr.egg-info\top_level.txt
32364writing manifest file 'ChimeraX_SchemeMgr.egg-info\SOURCES.txt'
32365reading manifest file 'ChimeraX_SchemeMgr.egg-info\SOURCES.txt'
32366writing manifest file 'ChimeraX_SchemeMgr.egg-info\SOURCES.txt'
32367Copying ChimeraX_SchemeMgr.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SchemeMgr-1.0-py3.11.egg-info
32368running install_scripts
32369creating build\bdist.win-amd64\wheel\chimerax_schememgr-1.0.dist-info\WHEEL
32370creating 'dist\chimerax_schememgr-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32371adding 'chimerax/scheme_mgr/__init__.py'
32372adding 'chimerax/scheme_mgr/manager.py'
32373adding 'chimerax_schememgr-1.0.dist-info/METADATA'
32374adding 'chimerax_schememgr-1.0.dist-info/WHEEL'
32375adding 'chimerax_schememgr-1.0.dist-info/top_level.txt'
32376adding 'chimerax_schememgr-1.0.dist-info/RECORD'
32377removing build\bdist.win-amd64\wheel
32378Distribution is in .\dist\ChimeraX_SchemeMgr-1.0-py3-none-any.whl
32379INFO:
32380
32381make sync
32382make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
32383cp -av dist/*.whl ../../../build/sync
32384'dist/chimerax_schememgr-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_schememgr-1.0-py3-none-any.whl'
32385make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
32386make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/scheme_mgr'
32387make -C sdf build
32388make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
32389if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
32390 echo "missing ChimeraX application's python"; exit 1; \
32391else \
32392 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32393fi
32394INFO:
32395Executing: devel build . exit true
32396C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32397!!
32398
32399 ********************************************************************************
32400 Please consider removing the following classifiers in favor of a SPDX license expression:
32401
32402 License :: Free for non-commercial use
32403
32404 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32405 ********************************************************************************
32406
32407!!
32408 self._finalize_license_expression()
32409running build
32410running build_py
32411creating build\lib\chimerax\sdf
32412copying src\sdf.py -> build\lib\chimerax\sdf
32413copying src\__init__.py -> build\lib\chimerax\sdf
32414running bdist_wheel
32415installing to build\bdist.win-amd64\wheel
32416running install
32417running install_lib
32418creating build\bdist.win-amd64\wheel
32419creating build\bdist.win-amd64\wheel\chimerax
32420creating build\bdist.win-amd64\wheel\chimerax\sdf
32421copying build\lib\chimerax\sdf\sdf.py -> build\bdist.win-amd64\wheel\.\chimerax\sdf
32422copying build\lib\chimerax\sdf\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\sdf
32423running install_egg_info
32424running egg_info
32425creating ChimeraX_SDF.egg-info
32426writing ChimeraX_SDF.egg-info\PKG-INFO
32427writing dependency_links to ChimeraX_SDF.egg-info\dependency_links.txt
32428writing requirements to ChimeraX_SDF.egg-info\requires.txt
32429writing top-level names to ChimeraX_SDF.egg-info\top_level.txt
32430writing manifest file 'ChimeraX_SDF.egg-info\SOURCES.txt'
32431reading manifest file 'ChimeraX_SDF.egg-info\SOURCES.txt'
32432writing manifest file 'ChimeraX_SDF.egg-info\SOURCES.txt'
32433Copying ChimeraX_SDF.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SDF-2.0.3-py3.11.egg-info
32434running install_scripts
32435creating build\bdist.win-amd64\wheel\chimerax_sdf-2.0.3.dist-info\WHEEL
32436creating 'dist\chimerax_sdf-2.0.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32437adding 'chimerax/sdf/__init__.py'
32438adding 'chimerax/sdf/sdf.py'
32439adding 'chimerax_sdf-2.0.3.dist-info/METADATA'
32440adding 'chimerax_sdf-2.0.3.dist-info/WHEEL'
32441adding 'chimerax_sdf-2.0.3.dist-info/top_level.txt'
32442adding 'chimerax_sdf-2.0.3.dist-info/RECORD'
32443removing build\bdist.win-amd64\wheel
32444Distribution is in .\dist\ChimeraX_SDF-2.0.3-py3-none-any.whl
32445INFO:
32446
32447make sync
32448make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
32449cp -av dist/*.whl ../../../build/sync
32450'dist/chimerax_sdf-2.0.3-py3-none-any.whl' -> '../../../build/sync/chimerax_sdf-2.0.3-py3-none-any.whl'
32451make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
32452make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sdf'
32453make -C sel_inspector build
32454make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
32455if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
32456 echo "missing ChimeraX application's python"; exit 1; \
32457else \
32458 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32459fi
32460INFO:
32461Executing: devel build . exit true
32462C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32463!!
32464
32465 ********************************************************************************
32466 Please consider removing the following classifiers in favor of a SPDX license expression:
32467
32468 License :: Free for non-commercial use
32469
32470 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32471 ********************************************************************************
32472
32473!!
32474 self._finalize_license_expression()
32475running build
32476running build_py
32477creating build\lib\chimerax\sel_inspector
32478copying src\tool.py -> build\lib\chimerax\sel_inspector
32479copying src\__init__.py -> build\lib\chimerax\sel_inspector
32480creating build\lib\chimerax\sel_inspector\icons
32481copying src\icons\magnifying-glass+water.png -> build\lib\chimerax\sel_inspector\icons
32482copying src\icons\magnifying-glass-thin.png -> build\lib\chimerax\sel_inspector\icons
32483copying src\icons\magnifying-glass.png -> build\lib\chimerax\sel_inspector\icons
32484running bdist_wheel
32485installing to build\bdist.win-amd64\wheel
32486running install
32487running install_lib
32488creating build\bdist.win-amd64\wheel
32489creating build\bdist.win-amd64\wheel\chimerax
32490creating build\bdist.win-amd64\wheel\chimerax\sel_inspector
32491creating build\bdist.win-amd64\wheel\chimerax\sel_inspector\icons
32492copying build\lib\chimerax\sel_inspector\icons\magnifying-glass+water.png -> build\bdist.win-amd64\wheel\.\chimerax\sel_inspector\icons
32493copying build\lib\chimerax\sel_inspector\icons\magnifying-glass-thin.png -> build\bdist.win-amd64\wheel\.\chimerax\sel_inspector\icons
32494copying build\lib\chimerax\sel_inspector\icons\magnifying-glass.png -> build\bdist.win-amd64\wheel\.\chimerax\sel_inspector\icons
32495copying build\lib\chimerax\sel_inspector\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\sel_inspector
32496copying build\lib\chimerax\sel_inspector\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\sel_inspector
32497running install_egg_info
32498running egg_info
32499creating ChimeraX_SelInspector.egg-info
32500writing ChimeraX_SelInspector.egg-info\PKG-INFO
32501writing dependency_links to ChimeraX_SelInspector.egg-info\dependency_links.txt
32502writing requirements to ChimeraX_SelInspector.egg-info\requires.txt
32503writing top-level names to ChimeraX_SelInspector.egg-info\top_level.txt
32504writing manifest file 'ChimeraX_SelInspector.egg-info\SOURCES.txt'
32505reading manifest file 'ChimeraX_SelInspector.egg-info\SOURCES.txt'
32506writing manifest file 'ChimeraX_SelInspector.egg-info\SOURCES.txt'
32507Copying ChimeraX_SelInspector.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SelInspector-1.0-py3.11.egg-info
32508running install_scripts
32509creating build\bdist.win-amd64\wheel\chimerax_selinspector-1.0.dist-info\WHEEL
32510creating 'dist\chimerax_selinspector-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32511adding 'chimerax/sel_inspector/__init__.py'
32512adding 'chimerax/sel_inspector/tool.py'
32513adding 'chimerax/sel_inspector/icons/magnifying-glass+water.png'
32514adding 'chimerax/sel_inspector/icons/magnifying-glass-thin.png'
32515adding 'chimerax/sel_inspector/icons/magnifying-glass.png'
32516adding 'chimerax_selinspector-1.0.dist-info/METADATA'
32517adding 'chimerax_selinspector-1.0.dist-info/WHEEL'
32518adding 'chimerax_selinspector-1.0.dist-info/top_level.txt'
32519adding 'chimerax_selinspector-1.0.dist-info/RECORD'
32520removing build\bdist.win-amd64\wheel
32521Distribution is in .\dist\ChimeraX_SelInspector-1.0-py3-none-any.whl
32522INFO:
32523
32524make sync
32525make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
32526cp -av dist/*.whl ../../../build/sync
32527'dist/chimerax_selinspector-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_selinspector-1.0-py3-none-any.whl'
32528make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
32529make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sel_inspector'
32530make -C segger build
32531make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segger'
32532tar xf seggerx_2024_08_12.tar.gz --no-same-owner
32533tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemTextContentLanguage'
32534tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemKeyphraseVersion'
32535tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemKeyphraseLabels'
32536tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemKeyphraseConfidences'
32537tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemTextContentLanguage'
32538tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemKeyphraseVersion'
32539tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemKeyphraseLabels'
32540tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.metadata:kMDItemKeyphraseConfidences'
32541touch seggerx
32542make -C seggerx/Segger build
32543make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segger/seggerx/Segger'
32544if [ -z "../../../../../ChimeraX.app/bin/python.exe" ]; then \
32545 echo "missing ChimeraX application's python"; exit 1; \
32546else \
32547 PYTHONNOUSERSITE=1 ../../../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32548fi
32549INFO:
32550Executing: devel build . exit true
32551C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32552!!
32553
32554 ********************************************************************************
32555 Please consider removing the following classifiers in favor of a SPDX license expression:
32556
32557 License :: Free for non-commercial use
32558
32559 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32560 ********************************************************************************
32561
32562!!
32563 self._finalize_license_expression()
32564running build
32565running build_py
32566creating build\lib\chimerax\segger
32567copying src\attributes.py -> build\lib\chimerax\segger
32568copying src\axes.py -> build\lib\chimerax\segger
32569copying src\ChimeraExtension.py -> build\lib\chimerax\segger
32570copying src\extract_region_dialog.py -> build\lib\chimerax\segger
32571copying src\fit_devel.py -> build\lib\chimerax\segger
32572copying src\fit_dialog.py -> build\lib\chimerax\segger
32573copying src\graph.py -> build\lib\chimerax\segger
32574copying src\imageviewer.py -> build\lib\chimerax\segger
32575copying src\iseg_dialog.py -> build\lib\chimerax\segger
32576copying src\Mesh.py -> build\lib\chimerax\segger
32577copying src\modelz.py -> build\lib\chimerax\segger
32578copying src\mousemode.py -> build\lib\chimerax\segger
32579copying src\opensave.py -> build\lib\chimerax\segger
32580copying src\orthoview.py -> build\lib\chimerax\segger
32581copying src\promod_dialog.py -> build\lib\chimerax\segger
32582copying src\quaternion.py -> build\lib\chimerax\segger
32583copying src\regions.py -> build\lib\chimerax\segger
32584copying src\regionsfile.py -> build\lib\chimerax\segger
32585copying src\rseg_dialog.py -> build\lib\chimerax\segger
32586copying src\segcmd.py -> build\lib\chimerax\segger
32587copying src\segfile.py -> build\lib\chimerax\segger
32588copying src\segloop_dialog.py -> build\lib\chimerax\segger
32589copying src\segment_dialog.py -> build\lib\chimerax\segger
32590copying src\__init__.py -> build\lib\chimerax\segger
32591copying src\volseg.png -> build\lib\chimerax\segger
32592running bdist_wheel
32593installing to build\bdist.win-amd64\wheel
32594running install
32595running install_lib
32596creating build\bdist.win-amd64\wheel
32597creating build\bdist.win-amd64\wheel\chimerax
32598creating build\bdist.win-amd64\wheel\chimerax\segger
32599copying build\lib\chimerax\segger\attributes.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32600copying build\lib\chimerax\segger\axes.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32601copying build\lib\chimerax\segger\ChimeraExtension.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32602copying build\lib\chimerax\segger\extract_region_dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32603copying build\lib\chimerax\segger\fit_devel.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32604copying build\lib\chimerax\segger\fit_dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32605copying build\lib\chimerax\segger\graph.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32606copying build\lib\chimerax\segger\imageviewer.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32607copying build\lib\chimerax\segger\iseg_dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32608copying build\lib\chimerax\segger\Mesh.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32609copying build\lib\chimerax\segger\modelz.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32610copying build\lib\chimerax\segger\mousemode.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32611copying build\lib\chimerax\segger\opensave.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32612copying build\lib\chimerax\segger\orthoview.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32613copying build\lib\chimerax\segger\promod_dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32614copying build\lib\chimerax\segger\quaternion.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32615copying build\lib\chimerax\segger\regions.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32616copying build\lib\chimerax\segger\regionsfile.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32617copying build\lib\chimerax\segger\rseg_dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32618copying build\lib\chimerax\segger\segcmd.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32619copying build\lib\chimerax\segger\segfile.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32620copying build\lib\chimerax\segger\segloop_dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32621copying build\lib\chimerax\segger\segment_dialog.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32622copying build\lib\chimerax\segger\volseg.png -> build\bdist.win-amd64\wheel\.\chimerax\segger
32623copying build\lib\chimerax\segger\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segger
32624running install_egg_info
32625running egg_info
32626creating ChimeraX_Segger.egg-info
32627writing ChimeraX_Segger.egg-info\PKG-INFO
32628writing dependency_links to ChimeraX_Segger.egg-info\dependency_links.txt
32629writing requirements to ChimeraX_Segger.egg-info\requires.txt
32630writing top-level names to ChimeraX_Segger.egg-info\top_level.txt
32631writing manifest file 'ChimeraX_Segger.egg-info\SOURCES.txt'
32632reading manifest file 'ChimeraX_Segger.egg-info\SOURCES.txt'
32633writing manifest file 'ChimeraX_Segger.egg-info\SOURCES.txt'
32634Copying ChimeraX_Segger.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Segger-1.0-py3.11.egg-info
32635running install_scripts
32636creating build\bdist.win-amd64\wheel\chimerax_segger-1.0.dist-info\WHEEL
32637creating 'dist\chimerax_segger-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
32638adding 'chimerax/segger/ChimeraExtension.py'
32639adding 'chimerax/segger/Mesh.py'
32640adding 'chimerax/segger/__init__.py'
32641adding 'chimerax/segger/attributes.py'
32642adding 'chimerax/segger/axes.py'
32643adding 'chimerax/segger/extract_region_dialog.py'
32644adding 'chimerax/segger/fit_devel.py'
32645adding 'chimerax/segger/fit_dialog.py'
32646adding 'chimerax/segger/graph.py'
32647adding 'chimerax/segger/imageviewer.py'
32648adding 'chimerax/segger/iseg_dialog.py'
32649adding 'chimerax/segger/modelz.py'
32650adding 'chimerax/segger/mousemode.py'
32651adding 'chimerax/segger/opensave.py'
32652adding 'chimerax/segger/orthoview.py'
32653adding 'chimerax/segger/promod_dialog.py'
32654adding 'chimerax/segger/quaternion.py'
32655adding 'chimerax/segger/regions.py'
32656adding 'chimerax/segger/regionsfile.py'
32657adding 'chimerax/segger/rseg_dialog.py'
32658adding 'chimerax/segger/segcmd.py'
32659adding 'chimerax/segger/segfile.py'
32660adding 'chimerax/segger/segloop_dialog.py'
32661adding 'chimerax/segger/segment_dialog.py'
32662adding 'chimerax/segger/volseg.png'
32663adding 'chimerax_segger-1.0.dist-info/METADATA'
32664adding 'chimerax_segger-1.0.dist-info/WHEEL'
32665adding 'chimerax_segger-1.0.dist-info/top_level.txt'
32666adding 'chimerax_segger-1.0.dist-info/RECORD'
32667removing build\bdist.win-amd64\wheel
32668Distribution is in .\dist\ChimeraX_Segger-1.0-py3-none-any.whl
32669INFO:
32670
32671make sync
32672make[7]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segger/seggerx/Segger'
32673cp -av dist/*.whl ../../../../../build/sync
32674'dist/chimerax_segger-1.0-py3-none-any.whl' -> '../../../../../build/sync/chimerax_segger-1.0-py3-none-any.whl'
32675make[7]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segger/seggerx/Segger'
32676make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segger/seggerx/Segger'
32677make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segger'
32678make -C segment build
32679make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
32680if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
32681 echo "missing ChimeraX application's python"; exit 1; \
32682else \
32683 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
32684fi
32685INFO:
32686Executing: devel build . exit true
32687C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
32688!!
32689
32690 ********************************************************************************
32691 Please consider removing the following classifiers in favor of a SPDX license expression:
32692
32693 License :: Free for non-commercial use
32694
32695 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
32696 ********************************************************************************
32697
32698!!
32699 self._finalize_license_expression()
32700running build
32701running build_py
32702creating build\lib.win-amd64-cpython-311\chimerax\segment
32703copying src\segment.py -> build\lib.win-amd64-cpython-311\chimerax\segment
32704copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\segment
32705running build_ext
32706building 'chimerax.segment._segment' extension
32707creating build\temp.win-amd64-cpython-311\Release\_segment
32708"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_segment/bin.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_segment\bin.obj
32709bin.cpp
32710"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_segment/pysegment.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_segment\pysegment.obj
32711pysegment.cpp
32712C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.h(27): warning C4305: '=': truncation from 'double' to 'float'
32713C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(48): warning C4244: '=': conversion from 'const int64_t' to 'int', possible loss of data
32714C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(49): warning C4244: '=': conversion from 'const int64_t' to 'int', possible loss of data
32715C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(50): warning C4244: '=': conversion from 'const int64_t' to 'int', possible loss of data
32716_segment/pysegment.cpp(225): warning C4244: 'initializing': conversion from 'int64_t' to 'unsigned int', possible loss of data
32717_segment/pysegment.cpp(246): warning C4244: 'initializing': conversion from 'int64_t' to 'unsigned int', possible loss of data
32718_segment/pysegment.cpp(390): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
32719_segment/pysegment.cpp(425): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
32720C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\watershed.cpp(18): warning C4244: 'initializing': conversion from 'const int64_t' to 'int', possible loss of data
32721_segment/pysegment.cpp(56): note: see reference to function template instantiation 'Segment_Map::Index Segment_Map::watershed_regions<T>(const T *,const int64_t *,float,Segment_Map::Index *)' being compiled
32722 with
32723 [
32724 T=char
32725 ]
32726_segment/pysegment.cpp(87): note: see reference to function template instantiation 'void Segment_Map::watershed_reg<char>(const Reference_Counted_Array::Array<char> &,float,Segment_Map::Index *,Segment_Map::Index *)' being compiled
32727C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\watershed.cpp(18): warning C4244: 'initializing': conversion from 'const int64_t' to 'int', possible loss of data
32728C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\watershed.cpp(18): warning C4244: 'initializing': conversion from 'const int64_t' to 'int', possible loss of data
32729C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(219): warning C4244: '=': conversion from 'const T' to 'float', possible loss of data
32730 with
32731 [
32732 T=int
32733 ]
32734_segment/pysegment.cpp(267): note: see reference to function template instantiation 'void Segment_Map::interface_values<T>(Segment_Map::Index *,const int64_t *,const T *,Segment_Map::Contacts &)' being compiled
32735 with
32736 [
32737 T=int
32738 ]
32739_segment/pysegment.cpp(290): note: see reference to function template instantiation 'void Segment_Map::interface_val<int>(Reference_Counted_Array::Array<unsigned int> &,const Reference_Counted_Array::Array<int> &,Segment_Map::Contacts &)' being compiled
32740C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(219): warning C4244: '=': conversion from 'const T' to 'float', possible loss of data
32741 with
32742 [
32743 T=unsigned int
32744 ]
32745_segment/pysegment.cpp(267): note: see reference to function template instantiation 'void Segment_Map::interface_values<T>(Segment_Map::Index *,const int64_t *,const T *,Segment_Map::Contacts &)' being compiled
32746 with
32747 [
32748 T=unsigned int
32749 ]
32750_segment/pysegment.cpp(290): note: see reference to function template instantiation 'void Segment_Map::interface_val<unsigned int>(Reference_Counted_Array::Array<unsigned int> &,const Reference_Counted_Array::Array<unsigned int> &,Segment_Map::Contacts &)' being compiled
32751C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(219): warning C4244: '=': conversion from 'const T' to 'float', possible loss of data
32752 with
32753 [
32754 T=long
32755 ]
32756_segment/pysegment.cpp(267): note: see reference to function template instantiation 'void Segment_Map::interface_values<T>(Segment_Map::Index *,const int64_t *,const T *,Segment_Map::Contacts &)' being compiled
32757 with
32758 [
32759 T=long
32760 ]
32761_segment/pysegment.cpp(290): note: see reference to function template instantiation 'void Segment_Map::interface_val<long>(Reference_Counted_Array::Array<unsigned int> &,const Reference_Counted_Array::Array<long> &,Segment_Map::Contacts &)' being compiled
32762C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(219): warning C4244: '=': conversion from 'const T' to 'float', possible loss of data
32763 with
32764 [
32765 T=unsigned long
32766 ]
32767_segment/pysegment.cpp(267): note: see reference to function template instantiation 'void Segment_Map::interface_values<T>(Segment_Map::Index *,const int64_t *,const T *,Segment_Map::Contacts &)' being compiled
32768 with
32769 [
32770 T=unsigned long
32771 ]
32772_segment/pysegment.cpp(290): note: see reference to function template instantiation 'void Segment_Map::interface_val<unsigned long>(Reference_Counted_Array::Array<unsigned int> &,const Reference_Counted_Array::Array<unsigned long> &,Segment_Map::Contacts &)' being compiled
32773C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(219): warning C4244: '=': conversion from 'const T' to 'float', possible loss of data
32774 with
32775 [
32776 T=double
32777 ]
32778_segment/pysegment.cpp(267): note: see reference to function template instantiation 'void Segment_Map::interface_values<T>(Segment_Map::Index *,const int64_t *,const T *,Segment_Map::Contacts &)' being compiled
32779 with
32780 [
32781 T=double
32782 ]
32783_segment/pysegment.cpp(290): note: see reference to function template instantiation 'void Segment_Map::interface_val<double>(Reference_Counted_Array::Array<unsigned int> &,const Reference_Counted_Array::Array<double> &,Segment_Map::Contacts &)' being compiled
32784C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(243): warning C4305: '=': truncation from 'double' to 'float'
32785_segment/pysegment.cpp(321): note: see reference to function template instantiation 'void Segment_Map::region_maxima<T>(Segment_Map::Index *,const int64_t *,const T *,Segment_Map::Index,int *,float *)' being compiled
32786 with
32787 [
32788 T=char
32789 ]
32790_segment/pysegment.cpp(351): note: see reference to function template instantiation 'void Segment_Map::region_max<char>(Reference_Counted_Array::Array<unsigned int> &,const Reference_Counted_Array::Array<char> &,Segment_Map::Index,int *,float *)' being compiled
32791C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(253): warning C4244: 'initializing': conversion from 'const T' to 'float', possible loss of data
32792 with
32793 [
32794 T=int
32795 ]
32796C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(253): warning C4244: 'initializing': conversion from 'const T' to 'float', possible loss of data
32797 with
32798 [
32799 T=unsigned int
32800 ]
32801C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(253): warning C4244: 'initializing': conversion from 'const T' to 'float', possible loss of data
32802 with
32803 [
32804 T=long
32805 ]
32806C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(253): warning C4244: 'initializing': conversion from 'const T' to 'float', possible loss of data
32807 with
32808 [
32809 T=unsigned long
32810 ]
32811C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\region_map.cpp(253): warning C4244: 'initializing': conversion from 'const T' to 'float', possible loss of data
32812 with
32813 [
32814 T=double
32815 ]
32816C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\watershed.cpp(94): warning C4244: 'initializing': conversion from 'const int64_t' to 'int', possible loss of data
32817_segment/pysegment.cpp(365): note: see reference to function template instantiation 'void Segment_Map::find_local_maxima<T>(const T *,const int64_t *,int *,int)' being compiled
32818 with
32819 [
32820 T=char
32821 ]
32822_segment/pysegment.cpp(391): note: see reference to function template instantiation 'void Segment_Map::find_local_max<char>(const Reference_Counted_Array::Array<char> &,int *,int)' being compiled
32823C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\watershed.cpp(94): warning C4244: 'initializing': conversion from 'const int64_t' to 'int', possible loss of data
32824C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segment\_segment\watershed.cpp(94): warning C4244: 'initializing': conversion from 'const int64_t' to 'int', possible loss of data
32825"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_segment/segment.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_segment\segment.obj
32826segment.cpp
32827"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_segment/segsurf.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_segment\segsurf.obj
32828segsurf.cpp
32829_segment/segsurf.cpp(733): warning C4267: 'initializing': conversion from 'size_t' to 'Index', possible loss of data
32830_segment/segsurf.cpp(1483): warning C4244: 'argument': conversion from 'Data_Type' to 'int', possible loss of data
32831 with
32832 [
32833 Data_Type=float
32834 ]
32835_segment/segsurf.cpp(1560): note: see reference to function template instantiation 'void contour_surface<float>(const Reference_Counted_Array::Array<float> &,int,const IArray &,bool,Contour_Surface **)' being compiled
32836_segment/segsurf.cpp(1483): warning C4244: 'argument': conversion from 'Data_Type' to 'int', possible loss of data
32837 with
32838 [
32839 Data_Type=double
32840 ]
32841_segment/segsurf.cpp(1560): note: see reference to function template instantiation 'void contour_surface<double>(const Reference_Counted_Array::Array<double> &,int,const IArray &,bool,Contour_Surface **)' being compiled
32842_segment/segsurf.cpp(1066): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32843_segment/segsurf.cpp(1059): note: while compiling class template member function 'void CSurface<Data_Type>::mark_point_edge_cuts(const Region_Point &,Grid_Cell_List &,Grid_Cell_List &)'
32844 with
32845 [
32846 Data_Type=char
32847 ]
32848_segment/segsurf.cpp(931): note: see reference to function template instantiation 'void CSurface<Data_Type>::mark_point_edge_cuts(const Region_Point &,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32849 with
32850 [
32851 Data_Type=char
32852 ]
32853_segment/segsurf.cpp(878): note: while compiling class template member function 'void CSurface<Data_Type>::compute_surface(void)'
32854 with
32855 [
32856 Data_Type=char
32857 ]
32858_segment/segsurf.cpp(1484): note: see reference to class template instantiation 'CSurface<Data_Type>' being compiled
32859 with
32860 [
32861 Data_Type=char
32862 ]
32863_segment/segsurf.cpp(1560): note: see reference to function template instantiation 'void contour_surface<char>(const Reference_Counted_Array::Array<char> &,int,const IArray &,bool,Contour_Surface **)' being compiled
32864_segment/segsurf.cpp(1072): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32865_segment/segsurf.cpp(1078): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32866_segment/segsurf.cpp(1084): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32867_segment/segsurf.cpp(1090): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32868_segment/segsurf.cpp(1096): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32869_segment/segsurf.cpp(1149): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32870_segment/segsurf.cpp(1137): note: while compiling class template member function 'void CSurface<Data_Type>::mark_interior_edge_cuts(Index,Index,Grid_Cell_List &,Grid_Cell_List &)'
32871 with
32872 [
32873 Data_Type=char
32874 ]
32875_segment/segsurf.cpp(1120): note: see reference to function template instantiation 'void CSurface<Data_Type>::mark_interior_edge_cuts(Index,Index,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32876 with
32877 [
32878 Data_Type=char
32879 ]
32880_segment/segsurf.cpp(1107): note: while compiling class template member function 'void CSurface<Data_Type>::mark_plane_edge_cuts(Grid_Cell_List &,Grid_Cell_List &,Index)'
32881 with
32882 [
32883 Data_Type=char
32884 ]
32885_segment/segsurf.cpp(889): note: see reference to function template instantiation 'void CSurface<Data_Type>::mark_plane_edge_cuts(Grid_Cell_List &,Grid_Cell_List &,Index)' being compiled
32886 with
32887 [
32888 Data_Type=char
32889 ]
32890_segment/segsurf.cpp(1151): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32891_segment/segsurf.cpp(1153): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32892_segment/segsurf.cpp(1155): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32893_segment/segsurf.cpp(1157): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32894_segment/segsurf.cpp(1159): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32895_segment/segsurf.cpp(1187): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32896_segment/segsurf.cpp(1172): note: while compiling class template member function 'void CSurface<Data_Type>::mark_boundary_edge_cuts(Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)'
32897 with
32898 [
32899 Data_Type=char
32900 ]
32901_segment/segsurf.cpp(1114): note: see reference to function template instantiation 'void CSurface<Data_Type>::mark_boundary_edge_cuts(Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32902 with
32903 [
32904 Data_Type=char
32905 ]
32906_segment/segsurf.cpp(1196): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32907_segment/segsurf.cpp(1205): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32908_segment/segsurf.cpp(1214): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32909_segment/segsurf.cpp(1223): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32910_segment/segsurf.cpp(1232): warning C4244: 'argument': conversion from 'double' to 'float', possible loss of data
32911_segment/segsurf.cpp(1245): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32912_segment/segsurf.cpp(1244): note: while compiling class template member function 'void CSurface<Data_Type>::add_vertex_axis_0(Index,Index,Index,float,Grid_Cell_List &,Grid_Cell_List &)'
32913 with
32914 [
32915 Data_Type=char
32916 ]
32917_segment/segsurf.cpp(1066): note: see reference to function template instantiation 'void CSurface<Data_Type>::add_vertex_axis_0(Index,Index,Index,float,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32918 with
32919 [
32920 Data_Type=char
32921 ]
32922_segment/segsurf.cpp(1245): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32923_segment/segsurf.cpp(1259): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32924_segment/segsurf.cpp(1258): note: while compiling class template member function 'void CSurface<Data_Type>::add_vertex_axis_1(Index,Index,Index,float,Grid_Cell_List &,Grid_Cell_List &)'
32925 with
32926 [
32927 Data_Type=char
32928 ]
32929_segment/segsurf.cpp(1078): note: see reference to function template instantiation 'void CSurface<Data_Type>::add_vertex_axis_1(Index,Index,Index,float,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32930 with
32931 [
32932 Data_Type=char
32933 ]
32934_segment/segsurf.cpp(1259): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32935_segment/segsurf.cpp(1273): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32936_segment/segsurf.cpp(1272): note: while compiling class template member function 'void CSurface<Data_Type>::add_vertex_axis_2(Index,Index,float,Grid_Cell_List &)'
32937 with
32938 [
32939 Data_Type=char
32940 ]
32941_segment/segsurf.cpp(1090): note: see reference to function template instantiation 'void CSurface<Data_Type>::add_vertex_axis_2(Index,Index,float,Grid_Cell_List &)' being compiled
32942 with
32943 [
32944 Data_Type=char
32945 ]
32946_segment/segsurf.cpp(1273): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32947_segment/segsurf.cpp(1289): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32948_segment/segsurf.cpp(1287): note: while compiling class template member function 'Index CSurface<Data_Type>::add_cap_vertex_l0(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)'
32949 with
32950 [
32951 Data_Type=char
32952 ]
32953_segment/segsurf.cpp(1068): note: see reference to function template instantiation 'Index CSurface<Data_Type>::add_cap_vertex_l0(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32954 with
32955 [
32956 Data_Type=char
32957 ]
32958_segment/segsurf.cpp(1289): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32959_segment/segsurf.cpp(1289): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32960_segment/segsurf.cpp(1305): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32961_segment/segsurf.cpp(1303): note: while compiling class template member function 'Index CSurface<Data_Type>::add_cap_vertex_r0(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)'
32962 with
32963 [
32964 Data_Type=char
32965 ]
32966_segment/segsurf.cpp(1074): note: see reference to function template instantiation 'Index CSurface<Data_Type>::add_cap_vertex_r0(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32967 with
32968 [
32969 Data_Type=char
32970 ]
32971_segment/segsurf.cpp(1305): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32972_segment/segsurf.cpp(1305): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32973_segment/segsurf.cpp(1322): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32974_segment/segsurf.cpp(1320): note: while compiling class template member function 'Index CSurface<Data_Type>::add_cap_vertex_l1(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)'
32975 with
32976 [
32977 Data_Type=char
32978 ]
32979_segment/segsurf.cpp(1080): note: see reference to function template instantiation 'Index CSurface<Data_Type>::add_cap_vertex_l1(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32980 with
32981 [
32982 Data_Type=char
32983 ]
32984_segment/segsurf.cpp(1322): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32985_segment/segsurf.cpp(1322): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32986_segment/segsurf.cpp(1339): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32987_segment/segsurf.cpp(1337): note: while compiling class template member function 'Index CSurface<Data_Type>::add_cap_vertex_r1(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)'
32988 with
32989 [
32990 Data_Type=char
32991 ]
32992_segment/segsurf.cpp(1086): note: see reference to function template instantiation 'Index CSurface<Data_Type>::add_cap_vertex_r1(Index,Index,Index,Index,Grid_Cell_List &,Grid_Cell_List &)' being compiled
32993 with
32994 [
32995 Data_Type=char
32996 ]
32997_segment/segsurf.cpp(1339): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32998_segment/segsurf.cpp(1339): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
32999_segment/segsurf.cpp(1355): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
33000_segment/segsurf.cpp(1353): note: while compiling class template member function 'Index CSurface<Data_Type>::add_cap_vertex_l2(Index,Index,Index,Index,Grid_Cell_List &)'
33001 with
33002 [
33003 Data_Type=char
33004 ]
33005_segment/segsurf.cpp(1092): note: see reference to function template instantiation 'Index CSurface<Data_Type>::add_cap_vertex_l2(Index,Index,Index,Index,Grid_Cell_List &)' being compiled
33006 with
33007 [
33008 Data_Type=char
33009 ]
33010_segment/segsurf.cpp(1355): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
33011_segment/segsurf.cpp(1355): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
33012_segment/segsurf.cpp(1371): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
33013_segment/segsurf.cpp(1369): note: while compiling class template member function 'Index CSurface<Data_Type>::add_cap_vertex_r2(Index,Index,Index,Index,Grid_Cell_List &)'
33014 with
33015 [
33016 Data_Type=char
33017 ]
33018_segment/segsurf.cpp(1098): note: see reference to function template instantiation 'Index CSurface<Data_Type>::add_cap_vertex_r2(Index,Index,Index,Index,Grid_Cell_List &)' being compiled
33019 with
33020 [
33021 Data_Type=char
33022 ]
33023_segment/segsurf.cpp(1371): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
33024_segment/segsurf.cpp(1371): warning C4244: 'argument': conversion from 'Index' to 'float', possible loss of data
33025_segment/segsurf.cpp(860): warning C4267: 'return': conversion from 'size_t' to 'Index', possible loss of data
33026_segment/segsurf.cpp(859): note: while compiling class template member function 'Index CSurface<Data_Type>::create_vertex(float,float,float)'
33027 with
33028 [
33029 Data_Type=double
33030 ]
33031_segment/segsurf.cpp(1245): note: see reference to function template instantiation 'Index CSurface<Data_Type>::create_vertex(float,float,float)' being compiled
33032 with
33033 [
33034 Data_Type=double
33035 ]
33036"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__segment build\temp.win-amd64-cpython-311\Release\_segment\bin.obj build\temp.win-amd64-cpython-311\Release\_segment\pysegment.obj build\temp.win-amd64-cpython-311\Release\_segment\segment.obj build\temp.win-amd64-cpython-311\Release\_segment\segsurf.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\segment\_segment.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_segment\_segment.cp311-win_amd64.lib
33037 Creating library build\temp.win-amd64-cpython-311\Release\_segment\_segment.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_segment\_segment.cp311-win_amd64.exp
33038Generating code
33039Finished generating code
33040running bdist_wheel
33041installing to build\bdist.win-amd64\wheel
33042running install
33043running install_lib
33044running build_ext
33045creating build\bdist.win-amd64\wheel
33046creating build\bdist.win-amd64\wheel\chimerax
33047creating build\bdist.win-amd64\wheel\chimerax\segment
33048copying build\lib.win-amd64-cpython-311\chimerax\segment\segment.py -> build\bdist.win-amd64\wheel\.\chimerax\segment
33049copying build\lib.win-amd64-cpython-311\chimerax\segment\_segment.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\segment
33050copying build\lib.win-amd64-cpython-311\chimerax\segment\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segment
33051running install_egg_info
33052running egg_info
33053creating ChimeraX_Segment.egg-info
33054writing ChimeraX_Segment.egg-info\PKG-INFO
33055writing dependency_links to ChimeraX_Segment.egg-info\dependency_links.txt
33056writing requirements to ChimeraX_Segment.egg-info\requires.txt
33057writing top-level names to ChimeraX_Segment.egg-info\top_level.txt
33058writing manifest file 'ChimeraX_Segment.egg-info\SOURCES.txt'
33059reading manifest file 'ChimeraX_Segment.egg-info\SOURCES.txt'
33060writing manifest file 'ChimeraX_Segment.egg-info\SOURCES.txt'
33061Copying ChimeraX_Segment.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Segment-1.0.1-py3.11.egg-info
33062running install_scripts
33063C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
33064 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
33065creating build\bdist.win-amd64\wheel\chimerax_segment-1.0.1.dist-info\WHEEL
33066creating 'dist\chimerax_segment-1.0.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
33067adding 'chimerax/segment/__init__.py'
33068adding 'chimerax/segment/_segment.cp311-win_amd64.pyd'
33069adding 'chimerax/segment/segment.py'
33070adding 'chimerax_segment-1.0.1.dist-info/METADATA'
33071adding 'chimerax_segment-1.0.1.dist-info/WHEEL'
33072adding 'chimerax_segment-1.0.1.dist-info/top_level.txt'
33073adding 'chimerax_segment-1.0.1.dist-info/RECORD'
33074removing build\bdist.win-amd64\wheel
33075Distribution is in .\dist\ChimeraX_Segment-1.0.1-cp311-cp311-win_amd64.whl
33076INFO:
33077
33078make sync
33079make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
33080cp -av dist/*.whl ../../../build/sync
33081'dist/chimerax_segment-1.0.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_segment-1.0.1-cp311-cp311-win_amd64.whl'
33082make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
33083make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segment'
33084make -C segmentations build
33085make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
33086if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
33087 echo "missing ChimeraX application's python"; exit 1; \
33088else \
33089 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
33090fi
33091INFO:
33092Executing: devel build . exit true
33093C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
33094!!
33095
33096 ********************************************************************************
33097 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
33098
33099 By 2026-Feb-18, you need to update your project and remove deprecated calls
33100 or your builds will no longer be supported.
33101
33102 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
33103 ********************************************************************************
33104
33105!!
33106 corresp(dist, value, root_dir)
33107running build
33108running build_py
33109creating build\lib\chimerax\segmentations
33110copying src\bundle.py -> build\lib\chimerax\segmentations
33111copying src\dicom_segmentations.py -> build\lib\chimerax\segmentations
33112copying src\segmentation.py -> build\lib\chimerax\segmentations
33113copying src\segmentation_tracker.py -> build\lib\chimerax\segmentations
33114copying src\settings.py -> build\lib\chimerax\segmentations
33115copying src\triggers.py -> build\lib\chimerax\segmentations
33116copying src\types.py -> build\lib\chimerax\segmentations
33117copying src\__init__.py -> build\lib\chimerax\segmentations
33118creating build\lib\chimerax\segmentations\actions
33119copying src\actions\__init__.py -> build\lib\chimerax\segmentations\actions
33120creating build\lib\chimerax\segmentations\cmd
33121copying src\cmd\segmentations.py -> build\lib\chimerax\segmentations\cmd
33122copying src\cmd\__init__.py -> build\lib\chimerax\segmentations\cmd
33123creating build\lib\chimerax\segmentations\graphics
33124copying src\graphics\camera.py -> build\lib\chimerax\segmentations\graphics
33125copying src\graphics\cylinder.py -> build\lib\chimerax\segmentations\graphics
33126copying src\graphics\overlays.py -> build\lib\chimerax\segmentations\graphics
33127copying src\graphics\sphere.py -> build\lib\chimerax\segmentations\graphics
33128copying src\graphics\view.py -> build\lib\chimerax\segmentations\graphics
33129copying src\graphics\__init__.py -> build\lib\chimerax\segmentations\graphics
33130creating build\lib\chimerax\segmentations\ui
33131copying src\ui\color_key.py -> build\lib\chimerax\segmentations\ui
33132copying src\ui\label.py -> build\lib\chimerax\segmentations\ui
33133copying src\ui\orthoplanes.py -> build\lib\chimerax\segmentations\ui
33134copying src\ui\orthoplane_tool.py -> build\lib\chimerax\segmentations\ui
33135copying src\ui\segmentations.py -> build\lib\chimerax\segmentations\ui
33136copying src\ui\segmentation_mouse_mode.py -> build\lib\chimerax\segmentations\ui
33137copying src\ui\__init__.py -> build\lib\chimerax\segmentations\ui
33138creating build\lib\chimerax\segmentations\view
33139copying src\view\cmd.py -> build\lib\chimerax\segmentations\view
33140copying src\view\modes.py -> build\lib\chimerax\segmentations\view
33141copying src\view\ui.py -> build\lib\chimerax\segmentations\view
33142copying src\view\__init__.py -> build\lib\chimerax\segmentations\view
33143creating build\lib\chimerax\segmentations\icons
33144copying src\icons\mouse_small.svg -> build\lib\chimerax\segmentations\icons
33145copying src\icons\right_controller_small.svg -> build\lib\chimerax\segmentations\icons
33146copying src\icons\create_segmentation.png -> build\lib\chimerax\segmentations\icons
33147copying src\icons\mouse.png -> build\lib\chimerax\segmentations\icons
33148copying src\icons\move_cursor.png -> build\lib\chimerax\segmentations\icons
33149copying src\icons\resize_cursor.png -> build\lib\chimerax\segmentations\icons
33150copying src\icons\right_controller.png -> build\lib\chimerax\segmentations\icons
33151copying src\icons\segmentation.png -> build\lib\chimerax\segmentations\icons
33152running bdist_wheel
33153installing to build\bdist.win-amd64\wheel
33154running install
33155running install_lib
33156creating build\bdist.win-amd64\wheel
33157creating build\bdist.win-amd64\wheel\chimerax
33158creating build\bdist.win-amd64\wheel\chimerax\segmentations
33159creating build\bdist.win-amd64\wheel\chimerax\segmentations\actions
33160copying build\lib\chimerax\segmentations\actions\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\actions
33161copying build\lib\chimerax\segmentations\bundle.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33162creating build\bdist.win-amd64\wheel\chimerax\segmentations\cmd
33163copying build\lib\chimerax\segmentations\cmd\segmentations.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\cmd
33164copying build\lib\chimerax\segmentations\cmd\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\cmd
33165copying build\lib\chimerax\segmentations\dicom_segmentations.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33166creating build\bdist.win-amd64\wheel\chimerax\segmentations\graphics
33167copying build\lib\chimerax\segmentations\graphics\camera.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\graphics
33168copying build\lib\chimerax\segmentations\graphics\cylinder.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\graphics
33169copying build\lib\chimerax\segmentations\graphics\overlays.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\graphics
33170copying build\lib\chimerax\segmentations\graphics\sphere.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\graphics
33171copying build\lib\chimerax\segmentations\graphics\view.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\graphics
33172copying build\lib\chimerax\segmentations\graphics\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\graphics
33173creating build\bdist.win-amd64\wheel\chimerax\segmentations\icons
33174copying build\lib\chimerax\segmentations\icons\create_segmentation.png -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33175copying build\lib\chimerax\segmentations\icons\mouse.png -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33176copying build\lib\chimerax\segmentations\icons\mouse_small.svg -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33177copying build\lib\chimerax\segmentations\icons\move_cursor.png -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33178copying build\lib\chimerax\segmentations\icons\resize_cursor.png -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33179copying build\lib\chimerax\segmentations\icons\right_controller.png -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33180copying build\lib\chimerax\segmentations\icons\right_controller_small.svg -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33181copying build\lib\chimerax\segmentations\icons\segmentation.png -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\icons
33182copying build\lib\chimerax\segmentations\segmentation.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33183copying build\lib\chimerax\segmentations\segmentation_tracker.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33184copying build\lib\chimerax\segmentations\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33185copying build\lib\chimerax\segmentations\triggers.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33186copying build\lib\chimerax\segmentations\types.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33187creating build\bdist.win-amd64\wheel\chimerax\segmentations\ui
33188copying build\lib\chimerax\segmentations\ui\color_key.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\ui
33189copying build\lib\chimerax\segmentations\ui\label.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\ui
33190copying build\lib\chimerax\segmentations\ui\orthoplanes.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\ui
33191copying build\lib\chimerax\segmentations\ui\orthoplane_tool.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\ui
33192copying build\lib\chimerax\segmentations\ui\segmentations.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\ui
33193copying build\lib\chimerax\segmentations\ui\segmentation_mouse_mode.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\ui
33194copying build\lib\chimerax\segmentations\ui\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\ui
33195creating build\bdist.win-amd64\wheel\chimerax\segmentations\view
33196copying build\lib\chimerax\segmentations\view\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\view
33197copying build\lib\chimerax\segmentations\view\modes.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\view
33198copying build\lib\chimerax\segmentations\view\ui.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\view
33199copying build\lib\chimerax\segmentations\view\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations\view
33200copying build\lib\chimerax\segmentations\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\segmentations
33201running install_egg_info
33202running egg_info
33203creating ChimeraX_Segmentations.egg-info
33204writing ChimeraX_Segmentations.egg-info\PKG-INFO
33205writing dependency_links to ChimeraX_Segmentations.egg-info\dependency_links.txt
33206writing requirements to ChimeraX_Segmentations.egg-info\requires.txt
33207writing top-level names to ChimeraX_Segmentations.egg-info\top_level.txt
33208writing manifest file 'ChimeraX_Segmentations.egg-info\SOURCES.txt'
33209reading manifest file 'ChimeraX_Segmentations.egg-info\SOURCES.txt'
33210writing manifest file 'ChimeraX_Segmentations.egg-info\SOURCES.txt'
33211Copying ChimeraX_Segmentations.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Segmentations-3.5.7-py3.11.egg-info
33212running install_scripts
33213creating build\bdist.win-amd64\wheel\chimerax_segmentations-3.5.7.dist-info\WHEEL
33214creating 'dist\chimerax_segmentations-3.5.7-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
33215adding 'chimerax/segmentations/__init__.py'
33216adding 'chimerax/segmentations/bundle.py'
33217adding 'chimerax/segmentations/dicom_segmentations.py'
33218adding 'chimerax/segmentations/segmentation.py'
33219adding 'chimerax/segmentations/segmentation_tracker.py'
33220adding 'chimerax/segmentations/settings.py'
33221adding 'chimerax/segmentations/triggers.py'
33222adding 'chimerax/segmentations/types.py'
33223adding 'chimerax/segmentations/actions/__init__.py'
33224adding 'chimerax/segmentations/cmd/__init__.py'
33225adding 'chimerax/segmentations/cmd/segmentations.py'
33226adding 'chimerax/segmentations/graphics/__init__.py'
33227adding 'chimerax/segmentations/graphics/camera.py'
33228adding 'chimerax/segmentations/graphics/cylinder.py'
33229adding 'chimerax/segmentations/graphics/overlays.py'
33230adding 'chimerax/segmentations/graphics/sphere.py'
33231adding 'chimerax/segmentations/graphics/view.py'
33232adding 'chimerax/segmentations/icons/create_segmentation.png'
33233adding 'chimerax/segmentations/icons/mouse.png'
33234adding 'chimerax/segmentations/icons/mouse_small.svg'
33235adding 'chimerax/segmentations/icons/move_cursor.png'
33236adding 'chimerax/segmentations/icons/resize_cursor.png'
33237adding 'chimerax/segmentations/icons/right_controller.png'
33238adding 'chimerax/segmentations/icons/right_controller_small.svg'
33239adding 'chimerax/segmentations/icons/segmentation.png'
33240adding 'chimerax/segmentations/ui/__init__.py'
33241adding 'chimerax/segmentations/ui/color_key.py'
33242adding 'chimerax/segmentations/ui/label.py'
33243adding 'chimerax/segmentations/ui/orthoplane_tool.py'
33244adding 'chimerax/segmentations/ui/orthoplanes.py'
33245adding 'chimerax/segmentations/ui/segmentation_mouse_mode.py'
33246adding 'chimerax/segmentations/ui/segmentations.py'
33247adding 'chimerax/segmentations/view/__init__.py'
33248adding 'chimerax/segmentations/view/cmd.py'
33249adding 'chimerax/segmentations/view/modes.py'
33250adding 'chimerax/segmentations/view/ui.py'
33251adding 'chimerax_segmentations-3.5.7.dist-info/METADATA'
33252adding 'chimerax_segmentations-3.5.7.dist-info/WHEEL'
33253adding 'chimerax_segmentations-3.5.7.dist-info/top_level.txt'
33254adding 'chimerax_segmentations-3.5.7.dist-info/RECORD'
33255removing build\bdist.win-amd64\wheel
33256Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\segmentations\dist\chimerax_segmentations-3.5.7-py3-none-any.whl
33257INFO:
33258
33259make sync
33260make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
33261cp -av dist/*.whl ../../../build/sync
33262'dist/chimerax_segmentations-3.5.7-py3-none-any.whl' -> '../../../build/sync/chimerax_segmentations-3.5.7-py3-none-any.whl'
33263make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
33264make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/segmentations'
33265make -C seqalign build
33266make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
33267if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
33268 echo "missing ChimeraX application's python"; exit 1; \
33269else \
33270 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
33271fi
33272INFO:
33273Executing: devel build . exit true
33274C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
33275!!
33276
33277 ********************************************************************************
33278 Please consider removing the following classifiers in favor of a SPDX license expression:
33279
33280 License :: Free for non-commercial use
33281
33282 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
33283 ********************************************************************************
33284
33285!!
33286 self._finalize_license_expression()
33287running build
33288running build_py
33289creating build\lib\chimerax\seqalign
33290copying src\align.py -> build\lib\chimerax\seqalign
33291copying src\alignment.py -> build\lib\chimerax\seqalign
33292copying src\cmd.py -> build\lib\chimerax\seqalign
33293copying src\manager.py -> build\lib\chimerax\seqalign
33294copying src\parse.py -> build\lib\chimerax\seqalign
33295copying src\settings.py -> build\lib\chimerax\seqalign
33296copying src\widgets.py -> build\lib\chimerax\seqalign
33297copying src\__init__.py -> build\lib\chimerax\seqalign
33298creating build\lib\chimerax\seqalign\io
33299copying src\io\readALN.py -> build\lib\chimerax\seqalign\io
33300copying src\io\readFASTA.py -> build\lib\chimerax\seqalign\io
33301copying src\io\readHSSP.py -> build\lib\chimerax\seqalign\io
33302copying src\io\readMSF.py -> build\lib\chimerax\seqalign\io
33303copying src\io\readPFAM.py -> build\lib\chimerax\seqalign\io
33304copying src\io\readPIR.py -> build\lib\chimerax\seqalign\io
33305copying src\io\readRSF.py -> build\lib\chimerax\seqalign\io
33306copying src\io\readSTOCKHOLM.py -> build\lib\chimerax\seqalign\io
33307copying src\io\saveALN.py -> build\lib\chimerax\seqalign\io
33308copying src\io\saveFASTA.py -> build\lib\chimerax\seqalign\io
33309copying src\io\savePIR.py -> build\lib\chimerax\seqalign\io
33310copying src\io\__init__.py -> build\lib\chimerax\seqalign\io
33311running bdist_wheel
33312installing to build\bdist.win-amd64\wheel
33313running install
33314running install_lib
33315creating build\bdist.win-amd64\wheel
33316creating build\bdist.win-amd64\wheel\chimerax
33317creating build\bdist.win-amd64\wheel\chimerax\seqalign
33318copying build\lib\chimerax\seqalign\align.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33319copying build\lib\chimerax\seqalign\alignment.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33320copying build\lib\chimerax\seqalign\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33321creating build\bdist.win-amd64\wheel\chimerax\seqalign\io
33322copying build\lib\chimerax\seqalign\io\readALN.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33323copying build\lib\chimerax\seqalign\io\readFASTA.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33324copying build\lib\chimerax\seqalign\io\readHSSP.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33325copying build\lib\chimerax\seqalign\io\readMSF.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33326copying build\lib\chimerax\seqalign\io\readPFAM.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33327copying build\lib\chimerax\seqalign\io\readPIR.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33328copying build\lib\chimerax\seqalign\io\readRSF.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33329copying build\lib\chimerax\seqalign\io\readSTOCKHOLM.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33330copying build\lib\chimerax\seqalign\io\saveALN.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33331copying build\lib\chimerax\seqalign\io\saveFASTA.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33332copying build\lib\chimerax\seqalign\io\savePIR.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33333copying build\lib\chimerax\seqalign\io\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign\io
33334copying build\lib\chimerax\seqalign\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33335copying build\lib\chimerax\seqalign\parse.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33336copying build\lib\chimerax\seqalign\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33337copying build\lib\chimerax\seqalign\widgets.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33338copying build\lib\chimerax\seqalign\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\seqalign
33339running install_egg_info
33340running egg_info
33341creating ChimeraX_Alignments.egg-info
33342writing ChimeraX_Alignments.egg-info\PKG-INFO
33343writing dependency_links to ChimeraX_Alignments.egg-info\dependency_links.txt
33344writing requirements to ChimeraX_Alignments.egg-info\requires.txt
33345writing top-level names to ChimeraX_Alignments.egg-info\top_level.txt
33346writing manifest file 'ChimeraX_Alignments.egg-info\SOURCES.txt'
33347reading manifest file 'ChimeraX_Alignments.egg-info\SOURCES.txt'
33348writing manifest file 'ChimeraX_Alignments.egg-info\SOURCES.txt'
33349Copying ChimeraX_Alignments.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Alignments-3.0.2-py3.11.egg-info
33350running install_scripts
33351creating build\bdist.win-amd64\wheel\chimerax_alignments-3.0.2.dist-info\WHEEL
33352creating 'dist\chimerax_alignments-3.0.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
33353adding 'chimerax/seqalign/__init__.py'
33354adding 'chimerax/seqalign/align.py'
33355adding 'chimerax/seqalign/alignment.py'
33356adding 'chimerax/seqalign/cmd.py'
33357adding 'chimerax/seqalign/manager.py'
33358adding 'chimerax/seqalign/parse.py'
33359adding 'chimerax/seqalign/settings.py'
33360adding 'chimerax/seqalign/widgets.py'
33361adding 'chimerax/seqalign/io/__init__.py'
33362adding 'chimerax/seqalign/io/readALN.py'
33363adding 'chimerax/seqalign/io/readFASTA.py'
33364adding 'chimerax/seqalign/io/readHSSP.py'
33365adding 'chimerax/seqalign/io/readMSF.py'
33366adding 'chimerax/seqalign/io/readPFAM.py'
33367adding 'chimerax/seqalign/io/readPIR.py'
33368adding 'chimerax/seqalign/io/readRSF.py'
33369adding 'chimerax/seqalign/io/readSTOCKHOLM.py'
33370adding 'chimerax/seqalign/io/saveALN.py'
33371adding 'chimerax/seqalign/io/saveFASTA.py'
33372adding 'chimerax/seqalign/io/savePIR.py'
33373adding 'chimerax_alignments-3.0.2.dist-info/METADATA'
33374adding 'chimerax_alignments-3.0.2.dist-info/WHEEL'
33375adding 'chimerax_alignments-3.0.2.dist-info/top_level.txt'
33376adding 'chimerax_alignments-3.0.2.dist-info/RECORD'
33377removing build\bdist.win-amd64\wheel
33378Distribution is in .\dist\ChimeraX_Alignments-3.0.2-py3-none-any.whl
33379INFO:
33380
33381make sync
33382make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
33383cp -av dist/*.whl ../../../build/sync
33384'dist/chimerax_alignments-3.0.2-py3-none-any.whl' -> '../../../build/sync/chimerax_alignments-3.0.2-py3-none-any.whl'
33385make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
33386make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seqalign'
33387make -C seq_view build
33388make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
33389if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
33390 echo "missing ChimeraX application's python"; exit 1; \
33391else \
33392 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
33393fi
33394INFO:
33395Executing: devel build . exit true
33396C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
33397!!
33398
33399 ********************************************************************************
33400 Please consider removing the following classifiers in favor of a SPDX license expression:
33401
33402 License :: Free for non-commercial use
33403
33404 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
33405 ********************************************************************************
33406
33407!!
33408 self._finalize_license_expression()
33409running build
33410running build_py
33411creating build\lib\chimerax\seq_view
33412copying src\associations_tool.py -> build\lib\chimerax\seq_view
33413copying src\cmd.py -> build\lib\chimerax\seq_view
33414copying src\copy_seq.py -> build\lib\chimerax\seq_view
33415copying src\feature_browser.py -> build\lib\chimerax\seq_view
33416copying src\identity.py -> build\lib\chimerax\seq_view
33417copying src\match.py -> build\lib\chimerax\seq_view
33418copying src\region_browser.py -> build\lib\chimerax\seq_view
33419copying src\rename_seq.py -> build\lib\chimerax\seq_view
33420copying src\seq_canvas.py -> build\lib\chimerax\seq_view
33421copying src\settings.py -> build\lib\chimerax\seq_view
33422copying src\settings_tool.py -> build\lib\chimerax\seq_view
33423copying src\tool.py -> build\lib\chimerax\seq_view
33424copying src\transfer_seq_tool.py -> build\lib\chimerax\seq_view
33425copying src\__init__.py -> build\lib\chimerax\seq_view
33426running bdist_wheel
33427installing to build\bdist.win-amd64\wheel
33428running install
33429running install_lib
33430creating build\bdist.win-amd64\wheel
33431creating build\bdist.win-amd64\wheel\chimerax
33432creating build\bdist.win-amd64\wheel\chimerax\seq_view
33433copying build\lib\chimerax\seq_view\associations_tool.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33434copying build\lib\chimerax\seq_view\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33435copying build\lib\chimerax\seq_view\copy_seq.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33436copying build\lib\chimerax\seq_view\feature_browser.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33437copying build\lib\chimerax\seq_view\identity.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33438copying build\lib\chimerax\seq_view\match.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33439copying build\lib\chimerax\seq_view\region_browser.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33440copying build\lib\chimerax\seq_view\rename_seq.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33441copying build\lib\chimerax\seq_view\seq_canvas.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33442copying build\lib\chimerax\seq_view\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33443copying build\lib\chimerax\seq_view\settings_tool.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33444copying build\lib\chimerax\seq_view\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33445copying build\lib\chimerax\seq_view\transfer_seq_tool.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33446copying build\lib\chimerax\seq_view\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\seq_view
33447running install_egg_info
33448running egg_info
33449creating ChimeraX_SeqView.egg-info
33450writing ChimeraX_SeqView.egg-info\PKG-INFO
33451writing dependency_links to ChimeraX_SeqView.egg-info\dependency_links.txt
33452writing requirements to ChimeraX_SeqView.egg-info\requires.txt
33453writing top-level names to ChimeraX_SeqView.egg-info\top_level.txt
33454writing manifest file 'ChimeraX_SeqView.egg-info\SOURCES.txt'
33455reading manifest file 'ChimeraX_SeqView.egg-info\SOURCES.txt'
33456writing manifest file 'ChimeraX_SeqView.egg-info\SOURCES.txt'
33457Copying ChimeraX_SeqView.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SeqView-2.17.2-py3.11.egg-info
33458running install_scripts
33459creating build\bdist.win-amd64\wheel\chimerax_seqview-2.17.2.dist-info\WHEEL
33460creating 'dist\chimerax_seqview-2.17.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
33461adding 'chimerax/seq_view/__init__.py'
33462adding 'chimerax/seq_view/associations_tool.py'
33463adding 'chimerax/seq_view/cmd.py'
33464adding 'chimerax/seq_view/copy_seq.py'
33465adding 'chimerax/seq_view/feature_browser.py'
33466adding 'chimerax/seq_view/identity.py'
33467adding 'chimerax/seq_view/match.py'
33468adding 'chimerax/seq_view/region_browser.py'
33469adding 'chimerax/seq_view/rename_seq.py'
33470adding 'chimerax/seq_view/seq_canvas.py'
33471adding 'chimerax/seq_view/settings.py'
33472adding 'chimerax/seq_view/settings_tool.py'
33473adding 'chimerax/seq_view/tool.py'
33474adding 'chimerax/seq_view/transfer_seq_tool.py'
33475adding 'chimerax_seqview-2.17.2.dist-info/METADATA'
33476adding 'chimerax_seqview-2.17.2.dist-info/WHEEL'
33477adding 'chimerax_seqview-2.17.2.dist-info/top_level.txt'
33478adding 'chimerax_seqview-2.17.2.dist-info/RECORD'
33479removing build\bdist.win-amd64\wheel
33480Distribution is in .\dist\ChimeraX_SeqView-2.17.2-py3-none-any.whl
33481INFO:
33482
33483make sync
33484make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
33485cp -av dist/*.whl ../../../build/sync
33486'dist/chimerax_seqview-2.17.2-py3-none-any.whl' -> '../../../build/sync/chimerax_seqview-2.17.2-py3-none-any.whl'
33487make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
33488make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/seq_view'
33489make -C shape build
33490make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
33491if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
33492 echo "missing ChimeraX application's python"; exit 1; \
33493else \
33494 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
33495fi
33496INFO:
33497Executing: devel build . exit true
33498C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
33499!!
33500
33501 ********************************************************************************
33502 Please consider removing the following classifiers in favor of a SPDX license expression:
33503
33504 License :: Free for non-commercial use
33505
33506 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
33507 ********************************************************************************
33508
33509!!
33510 self._finalize_license_expression()
33511running build
33512running build_py
33513creating build\lib\chimerax\shape
33514copying src\boxpath.py -> build\lib\chimerax\shape
33515copying src\resizemode.py -> build\lib\chimerax\shape
33516copying src\shape.py -> build\lib\chimerax\shape
33517copying src\__init__.py -> build\lib\chimerax\shape
33518running bdist_wheel
33519installing to build\bdist.win-amd64\wheel
33520running install
33521running install_lib
33522creating build\bdist.win-amd64\wheel
33523creating build\bdist.win-amd64\wheel\chimerax
33524creating build\bdist.win-amd64\wheel\chimerax\shape
33525copying build\lib\chimerax\shape\boxpath.py -> build\bdist.win-amd64\wheel\.\chimerax\shape
33526copying build\lib\chimerax\shape\resizemode.py -> build\bdist.win-amd64\wheel\.\chimerax\shape
33527copying build\lib\chimerax\shape\shape.py -> build\bdist.win-amd64\wheel\.\chimerax\shape
33528copying build\lib\chimerax\shape\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\shape
33529running install_egg_info
33530running egg_info
33531creating ChimeraX_Shape.egg-info
33532writing ChimeraX_Shape.egg-info\PKG-INFO
33533writing dependency_links to ChimeraX_Shape.egg-info\dependency_links.txt
33534writing requirements to ChimeraX_Shape.egg-info\requires.txt
33535writing top-level names to ChimeraX_Shape.egg-info\top_level.txt
33536writing manifest file 'ChimeraX_Shape.egg-info\SOURCES.txt'
33537reading manifest file 'ChimeraX_Shape.egg-info\SOURCES.txt'
33538writing manifest file 'ChimeraX_Shape.egg-info\SOURCES.txt'
33539Copying ChimeraX_Shape.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Shape-1.1-py3.11.egg-info
33540running install_scripts
33541creating build\bdist.win-amd64\wheel\chimerax_shape-1.1.dist-info\WHEEL
33542creating 'dist\chimerax_shape-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
33543adding 'chimerax/shape/__init__.py'
33544adding 'chimerax/shape/boxpath.py'
33545adding 'chimerax/shape/resizemode.py'
33546adding 'chimerax/shape/shape.py'
33547adding 'chimerax_shape-1.1.dist-info/METADATA'
33548adding 'chimerax_shape-1.1.dist-info/WHEEL'
33549adding 'chimerax_shape-1.1.dist-info/top_level.txt'
33550adding 'chimerax_shape-1.1.dist-info/RECORD'
33551removing build\bdist.win-amd64\wheel
33552Distribution is in .\dist\ChimeraX_Shape-1.1-py3-none-any.whl
33553INFO:
33554
33555make sync
33556make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
33557cp -av dist/*.whl ../../../build/sync
33558'dist/chimerax_shape-1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_shape-1.1-py3-none-any.whl'
33559make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
33560make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shape'
33561make -C shell build
33562make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
33563if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
33564 echo "missing ChimeraX application's python"; exit 1; \
33565else \
33566 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
33567fi
33568INFO:
33569Executing: devel build . exit true
33570C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
33571!!
33572
33573 ********************************************************************************
33574 Please consider removing the following classifiers in favor of a SPDX license expression:
33575
33576 License :: Free for non-commercial use
33577
33578 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
33579 ********************************************************************************
33580
33581!!
33582 self._finalize_license_expression()
33583running build
33584running build_py
33585creating build\lib\chimerax\shell
33586copying src\tool.py -> build\lib\chimerax\shell
33587copying src\__init__.py -> build\lib\chimerax\shell
33588running bdist_wheel
33589installing to build\bdist.win-amd64\wheel
33590running install
33591running install_lib
33592creating build\bdist.win-amd64\wheel
33593creating build\bdist.win-amd64\wheel\chimerax
33594creating build\bdist.win-amd64\wheel\chimerax\shell
33595copying build\lib\chimerax\shell\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\shell
33596copying build\lib\chimerax\shell\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\shell
33597running install_egg_info
33598running egg_info
33599creating ChimeraX_Shell.egg-info
33600writing ChimeraX_Shell.egg-info\PKG-INFO
33601writing dependency_links to ChimeraX_Shell.egg-info\dependency_links.txt
33602writing requirements to ChimeraX_Shell.egg-info\requires.txt
33603writing top-level names to ChimeraX_Shell.egg-info\top_level.txt
33604writing manifest file 'ChimeraX_Shell.egg-info\SOURCES.txt'
33605reading manifest file 'ChimeraX_Shell.egg-info\SOURCES.txt'
33606writing manifest file 'ChimeraX_Shell.egg-info\SOURCES.txt'
33607Copying ChimeraX_Shell.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Shell-1.0.1-py3.11.egg-info
33608running install_scripts
33609creating build\bdist.win-amd64\wheel\chimerax_shell-1.0.1.dist-info\WHEEL
33610creating 'dist\chimerax_shell-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
33611adding 'chimerax/shell/__init__.py'
33612adding 'chimerax/shell/tool.py'
33613adding 'chimerax_shell-1.0.1.dist-info/METADATA'
33614adding 'chimerax_shell-1.0.1.dist-info/WHEEL'
33615adding 'chimerax_shell-1.0.1.dist-info/top_level.txt'
33616adding 'chimerax_shell-1.0.1.dist-info/RECORD'
33617removing build\bdist.win-amd64\wheel
33618Distribution is in .\dist\ChimeraX_Shell-1.0.1-py3-none-any.whl
33619INFO:
33620
33621make sync
33622make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
33623cp -av dist/*.whl ../../../build/sync
33624'dist/chimerax_shell-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_shell-1.0.1-py3-none-any.whl'
33625make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
33626make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shell'
33627make -C shortcuts build
33628make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
33629if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
33630 echo "missing ChimeraX application's python"; exit 1; \
33631else \
33632 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
33633fi
33634INFO:
33635Executing: devel build . exit true
33636C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
33637!!
33638
33639 ********************************************************************************
33640 Please consider removing the following classifiers in favor of a SPDX license expression:
33641
33642 License :: Free for non-commercial use
33643
33644 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
33645 ********************************************************************************
33646
33647!!
33648 self._finalize_license_expression()
33649running build
33650running build_py
33651creating build\lib\chimerax\shortcuts
33652copying src\settings.py -> build\lib\chimerax\shortcuts
33653copying src\shortcuts.py -> build\lib\chimerax\shortcuts
33654copying src\tool.py -> build\lib\chimerax\shortcuts
33655copying src\__init__.py -> build\lib\chimerax\shortcuts
33656creating build\lib\chimerax\shortcuts\icons
33657copying src\icons\airways.png -> build\lib\chimerax\shortcuts\icons
33658copying src\icons\atomhide-dark.png -> build\lib\chimerax\shortcuts\icons
33659copying src\icons\atomhide.png -> build\lib\chimerax\shortcuts\icons
33660copying src\icons\atomshow.png -> build\lib\chimerax\shortcuts\icons
33661copying src\icons\ball.png -> build\lib\chimerax\shortcuts\icons
33662copying src\icons\bfactor.png -> build\lib\chimerax\shortcuts\icons
33663copying src\icons\blackbg.png -> build\lib\chimerax\shortcuts\icons
33664copying src\icons\brain.png -> build\lib\chimerax\shortcuts\icons
33665copying src\icons\camera.png -> build\lib\chimerax\shortcuts\icons
33666copying src\icons\chest.png -> build\lib\chimerax\shortcuts\icons
33667copying src\icons\colorbychain.png -> build\lib\chimerax\shortcuts\icons
33668copying src\icons\colorbyelement.png -> build\lib\chimerax\shortcuts\icons
33669copying src\icons\colorrandom.png -> build\lib\chimerax\shortcuts\icons
33670copying src\icons\colorzone.png -> build\lib\chimerax\shortcuts\icons
33671copying src\icons\cubeoutline.png -> build\lib\chimerax\shortcuts\icons
33672copying src\icons\diffmap.png -> build\lib\chimerax\shortcuts\icons
33673copying src\icons\dust.png -> build\lib\chimerax\shortcuts\icons
33674copying src\icons\ear.png -> build\lib\chimerax\shortcuts\icons
33675copying src\icons\esp.png -> build\lib\chimerax\shortcuts\icons
33676copying src\icons\fitmap.png -> build\lib\chimerax\shortcuts\icons
33677copying src\icons\flat.png -> build\lib\chimerax\shortcuts\icons
33678copying src\icons\fulllight.png -> build\lib\chimerax\shortcuts\icons
33679copying src\icons\fullvolume.png -> build\lib\chimerax\shortcuts\icons
33680copying src\icons\graybg.png -> build\lib\chimerax\shortcuts\icons
33681copying src\icons\hbonds.png -> build\lib\chimerax\shortcuts\icons
33682copying src\icons\hbondsflat.png -> build\lib\chimerax\shortcuts\icons
33683copying src\icons\hbondsflathide.png -> build\lib\chimerax\shortcuts\icons
33684copying src\icons\hbondshide.png -> build\lib\chimerax\shortcuts\icons
33685copying src\icons\hidemap.png -> build\lib\chimerax\shortcuts\icons
33686copying src\icons\hydrophobicity.png -> build\lib\chimerax\shortcuts\icons
33687copying src\icons\icecube.png -> build\lib\chimerax\shortcuts\icons
33688copying src\icons\initialcurve.png -> build\lib\chimerax\shortcuts\icons
33689copying src\icons\interfaces.png -> build\lib\chimerax\shortcuts\icons
33690copying src\icons\lock.png -> build\lib\chimerax\shortcuts\icons
33691copying src\icons\mapimage.png -> build\lib\chimerax\shortcuts\icons
33692copying src\icons\mapsurf.png -> build\lib\chimerax\shortcuts\icons
33693copying src\icons\mesh.png -> build\lib\chimerax\shortcuts\icons
33694copying src\icons\orient-dark.png -> build\lib\chimerax\shortcuts\icons
33695copying src\icons\orient.png -> build\lib\chimerax\shortcuts\icons
33696copying src\icons\orthoplanes.png -> build\lib\chimerax\shortcuts\icons
33697copying src\icons\outlinebox.png -> build\lib\chimerax\shortcuts\icons
33698copying src\icons\perpslice.png -> build\lib\chimerax\shortcuts\icons
33699copying src\icons\plane.png -> build\lib\chimerax\shortcuts\icons
33700copying src\icons\polymer.png -> build\lib\chimerax\shortcuts\icons
33701copying src\icons\rainbow.png -> build\lib\chimerax\shortcuts\icons
33702copying src\icons\ribbon.png -> build\lib\chimerax\shortcuts\icons
33703copying src\icons\ribhide-dark.png -> build\lib\chimerax\shortcuts\icons
33704copying src\icons\ribhide.png -> build\lib\chimerax\shortcuts\icons
33705copying src\icons\ribshow.png -> build\lib\chimerax\shortcuts\icons
33706copying src\icons\sequence.png -> build\lib\chimerax\shortcuts\icons
33707copying src\icons\shadow.png -> build\lib\chimerax\shortcuts\icons
33708copying src\icons\showmap.png -> build\lib\chimerax\shortcuts\icons
33709copying src\icons\silhouette-dark.png -> build\lib\chimerax\shortcuts\icons
33710copying src\icons\silhouette.png -> build\lib\chimerax\shortcuts\icons
33711copying src\icons\simplelight.png -> build\lib\chimerax\shortcuts\icons
33712copying src\icons\slab.png -> build\lib\chimerax\shortcuts\icons
33713copying src\icons\smooth.png -> build\lib\chimerax\shortcuts\icons
33714copying src\icons\softlight.png -> build\lib\chimerax\shortcuts\icons
33715copying src\icons\sphere.png -> build\lib\chimerax\shortcuts\icons
33716copying src\icons\step1.png -> build\lib\chimerax\shortcuts\icons
33717copying src\icons\step2.png -> build\lib\chimerax\shortcuts\icons
33718copying src\icons\step4.png -> build\lib\chimerax\shortcuts\icons
33719copying src\icons\stick.png -> build\lib\chimerax\shortcuts\icons
33720copying src\icons\surf.png -> build\lib\chimerax\shortcuts\icons
33721copying src\icons\surfhide-dark.png -> build\lib\chimerax\shortcuts\icons
33722copying src\icons\surfhide.png -> build\lib\chimerax\shortcuts\icons
33723copying src\icons\surfshow.png -> build\lib\chimerax\shortcuts\icons
33724copying src\icons\video.png -> build\lib\chimerax\shortcuts\icons
33725copying src\icons\viewall-dark.png -> build\lib\chimerax\shortcuts\icons
33726copying src\icons\viewall.png -> build\lib\chimerax\shortcuts\icons
33727copying src\icons\viewsel-dark.png -> build\lib\chimerax\shortcuts\icons
33728copying src\icons\viewsel.png -> build\lib\chimerax\shortcuts\icons
33729copying src\icons\volzone.png -> build\lib\chimerax\shortcuts\icons
33730copying src\icons\vr.png -> build\lib\chimerax\shortcuts\icons
33731copying src\icons\whitebg.png -> build\lib\chimerax\shortcuts\icons
33732copying src\icons\xr.png -> build\lib\chimerax\shortcuts\icons
33733copying src\icons\xyzslice.png -> build\lib\chimerax\shortcuts\icons
33734copying src\icons\raycasting.svg -> build\lib\chimerax\shortcuts\icons
33735running bdist_wheel
33736installing to build\bdist.win-amd64\wheel
33737running install
33738running install_lib
33739creating build\bdist.win-amd64\wheel
33740creating build\bdist.win-amd64\wheel\chimerax
33741creating build\bdist.win-amd64\wheel\chimerax\shortcuts
33742creating build\bdist.win-amd64\wheel\chimerax\shortcuts\icons
33743copying build\lib\chimerax\shortcuts\icons\airways.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33744copying build\lib\chimerax\shortcuts\icons\atomhide-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33745copying build\lib\chimerax\shortcuts\icons\atomhide.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33746copying build\lib\chimerax\shortcuts\icons\atomshow.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33747copying build\lib\chimerax\shortcuts\icons\ball.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33748copying build\lib\chimerax\shortcuts\icons\bfactor.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33749copying build\lib\chimerax\shortcuts\icons\blackbg.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33750copying build\lib\chimerax\shortcuts\icons\brain.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33751copying build\lib\chimerax\shortcuts\icons\camera.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33752copying build\lib\chimerax\shortcuts\icons\chest.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33753copying build\lib\chimerax\shortcuts\icons\colorbychain.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33754copying build\lib\chimerax\shortcuts\icons\colorbyelement.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33755copying build\lib\chimerax\shortcuts\icons\colorrandom.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33756copying build\lib\chimerax\shortcuts\icons\colorzone.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33757copying build\lib\chimerax\shortcuts\icons\cubeoutline.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33758copying build\lib\chimerax\shortcuts\icons\diffmap.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33759copying build\lib\chimerax\shortcuts\icons\dust.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33760copying build\lib\chimerax\shortcuts\icons\ear.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33761copying build\lib\chimerax\shortcuts\icons\esp.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33762copying build\lib\chimerax\shortcuts\icons\fitmap.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33763copying build\lib\chimerax\shortcuts\icons\flat.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33764copying build\lib\chimerax\shortcuts\icons\fulllight.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33765copying build\lib\chimerax\shortcuts\icons\fullvolume.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33766copying build\lib\chimerax\shortcuts\icons\graybg.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33767copying build\lib\chimerax\shortcuts\icons\hbonds.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33768copying build\lib\chimerax\shortcuts\icons\hbondsflat.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33769copying build\lib\chimerax\shortcuts\icons\hbondsflathide.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33770copying build\lib\chimerax\shortcuts\icons\hbondshide.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33771copying build\lib\chimerax\shortcuts\icons\hidemap.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33772copying build\lib\chimerax\shortcuts\icons\hydrophobicity.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33773copying build\lib\chimerax\shortcuts\icons\icecube.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33774copying build\lib\chimerax\shortcuts\icons\initialcurve.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33775copying build\lib\chimerax\shortcuts\icons\interfaces.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33776copying build\lib\chimerax\shortcuts\icons\lock.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33777copying build\lib\chimerax\shortcuts\icons\mapimage.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33778copying build\lib\chimerax\shortcuts\icons\mapsurf.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33779copying build\lib\chimerax\shortcuts\icons\mesh.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33780copying build\lib\chimerax\shortcuts\icons\orient-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33781copying build\lib\chimerax\shortcuts\icons\orient.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33782copying build\lib\chimerax\shortcuts\icons\orthoplanes.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33783copying build\lib\chimerax\shortcuts\icons\outlinebox.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33784copying build\lib\chimerax\shortcuts\icons\perpslice.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33785copying build\lib\chimerax\shortcuts\icons\plane.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33786copying build\lib\chimerax\shortcuts\icons\polymer.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33787copying build\lib\chimerax\shortcuts\icons\rainbow.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33788copying build\lib\chimerax\shortcuts\icons\raycasting.svg -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33789copying build\lib\chimerax\shortcuts\icons\ribbon.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33790copying build\lib\chimerax\shortcuts\icons\ribhide-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33791copying build\lib\chimerax\shortcuts\icons\ribhide.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33792copying build\lib\chimerax\shortcuts\icons\ribshow.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33793copying build\lib\chimerax\shortcuts\icons\sequence.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33794copying build\lib\chimerax\shortcuts\icons\shadow.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33795copying build\lib\chimerax\shortcuts\icons\showmap.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33796copying build\lib\chimerax\shortcuts\icons\silhouette-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33797copying build\lib\chimerax\shortcuts\icons\silhouette.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33798copying build\lib\chimerax\shortcuts\icons\simplelight.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33799copying build\lib\chimerax\shortcuts\icons\slab.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33800copying build\lib\chimerax\shortcuts\icons\smooth.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33801copying build\lib\chimerax\shortcuts\icons\softlight.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33802copying build\lib\chimerax\shortcuts\icons\sphere.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33803copying build\lib\chimerax\shortcuts\icons\step1.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33804copying build\lib\chimerax\shortcuts\icons\step2.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33805copying build\lib\chimerax\shortcuts\icons\step4.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33806copying build\lib\chimerax\shortcuts\icons\stick.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33807copying build\lib\chimerax\shortcuts\icons\surf.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33808copying build\lib\chimerax\shortcuts\icons\surfhide-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33809copying build\lib\chimerax\shortcuts\icons\surfhide.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33810copying build\lib\chimerax\shortcuts\icons\surfshow.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33811copying build\lib\chimerax\shortcuts\icons\video.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33812copying build\lib\chimerax\shortcuts\icons\viewall-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33813copying build\lib\chimerax\shortcuts\icons\viewall.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33814copying build\lib\chimerax\shortcuts\icons\viewsel-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33815copying build\lib\chimerax\shortcuts\icons\viewsel.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33816copying build\lib\chimerax\shortcuts\icons\volzone.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33817copying build\lib\chimerax\shortcuts\icons\vr.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33818copying build\lib\chimerax\shortcuts\icons\whitebg.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33819copying build\lib\chimerax\shortcuts\icons\xr.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33820copying build\lib\chimerax\shortcuts\icons\xyzslice.png -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts\icons
33821copying build\lib\chimerax\shortcuts\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts
33822copying build\lib\chimerax\shortcuts\shortcuts.py -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts
33823copying build\lib\chimerax\shortcuts\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts
33824copying build\lib\chimerax\shortcuts\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\shortcuts
33825running install_egg_info
33826running egg_info
33827creating ChimeraX_Shortcuts.egg-info
33828writing ChimeraX_Shortcuts.egg-info\PKG-INFO
33829writing dependency_links to ChimeraX_Shortcuts.egg-info\dependency_links.txt
33830writing requirements to ChimeraX_Shortcuts.egg-info\requires.txt
33831writing top-level names to ChimeraX_Shortcuts.egg-info\top_level.txt
33832writing manifest file 'ChimeraX_Shortcuts.egg-info\SOURCES.txt'
33833reading manifest file 'ChimeraX_Shortcuts.egg-info\SOURCES.txt'
33834writing manifest file 'ChimeraX_Shortcuts.egg-info\SOURCES.txt'
33835Copying ChimeraX_Shortcuts.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Shortcuts-1.2.1-py3.11.egg-info
33836running install_scripts
33837creating build\bdist.win-amd64\wheel\chimerax_shortcuts-1.2.1.dist-info\WHEEL
33838creating 'dist\chimerax_shortcuts-1.2.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
33839adding 'chimerax/shortcuts/__init__.py'
33840adding 'chimerax/shortcuts/settings.py'
33841adding 'chimerax/shortcuts/shortcuts.py'
33842adding 'chimerax/shortcuts/tool.py'
33843adding 'chimerax/shortcuts/icons/airways.png'
33844adding 'chimerax/shortcuts/icons/atomhide-dark.png'
33845adding 'chimerax/shortcuts/icons/atomhide.png'
33846adding 'chimerax/shortcuts/icons/atomshow.png'
33847adding 'chimerax/shortcuts/icons/ball.png'
33848adding 'chimerax/shortcuts/icons/bfactor.png'
33849adding 'chimerax/shortcuts/icons/blackbg.png'
33850adding 'chimerax/shortcuts/icons/brain.png'
33851adding 'chimerax/shortcuts/icons/camera.png'
33852adding 'chimerax/shortcuts/icons/chest.png'
33853adding 'chimerax/shortcuts/icons/colorbychain.png'
33854adding 'chimerax/shortcuts/icons/colorbyelement.png'
33855adding 'chimerax/shortcuts/icons/colorrandom.png'
33856adding 'chimerax/shortcuts/icons/colorzone.png'
33857adding 'chimerax/shortcuts/icons/cubeoutline.png'
33858adding 'chimerax/shortcuts/icons/diffmap.png'
33859adding 'chimerax/shortcuts/icons/dust.png'
33860adding 'chimerax/shortcuts/icons/ear.png'
33861adding 'chimerax/shortcuts/icons/esp.png'
33862adding 'chimerax/shortcuts/icons/fitmap.png'
33863adding 'chimerax/shortcuts/icons/flat.png'
33864adding 'chimerax/shortcuts/icons/fulllight.png'
33865adding 'chimerax/shortcuts/icons/fullvolume.png'
33866adding 'chimerax/shortcuts/icons/graybg.png'
33867adding 'chimerax/shortcuts/icons/hbonds.png'
33868adding 'chimerax/shortcuts/icons/hbondsflat.png'
33869adding 'chimerax/shortcuts/icons/hbondsflathide.png'
33870adding 'chimerax/shortcuts/icons/hbondshide.png'
33871adding 'chimerax/shortcuts/icons/hidemap.png'
33872adding 'chimerax/shortcuts/icons/hydrophobicity.png'
33873adding 'chimerax/shortcuts/icons/icecube.png'
33874adding 'chimerax/shortcuts/icons/initialcurve.png'
33875adding 'chimerax/shortcuts/icons/interfaces.png'
33876adding 'chimerax/shortcuts/icons/lock.png'
33877adding 'chimerax/shortcuts/icons/mapimage.png'
33878adding 'chimerax/shortcuts/icons/mapsurf.png'
33879adding 'chimerax/shortcuts/icons/mesh.png'
33880adding 'chimerax/shortcuts/icons/orient-dark.png'
33881adding 'chimerax/shortcuts/icons/orient.png'
33882adding 'chimerax/shortcuts/icons/orthoplanes.png'
33883adding 'chimerax/shortcuts/icons/outlinebox.png'
33884adding 'chimerax/shortcuts/icons/perpslice.png'
33885adding 'chimerax/shortcuts/icons/plane.png'
33886adding 'chimerax/shortcuts/icons/polymer.png'
33887adding 'chimerax/shortcuts/icons/rainbow.png'
33888adding 'chimerax/shortcuts/icons/raycasting.svg'
33889adding 'chimerax/shortcuts/icons/ribbon.png'
33890adding 'chimerax/shortcuts/icons/ribhide-dark.png'
33891adding 'chimerax/shortcuts/icons/ribhide.png'
33892adding 'chimerax/shortcuts/icons/ribshow.png'
33893adding 'chimerax/shortcuts/icons/sequence.png'
33894adding 'chimerax/shortcuts/icons/shadow.png'
33895adding 'chimerax/shortcuts/icons/showmap.png'
33896adding 'chimerax/shortcuts/icons/silhouette-dark.png'
33897adding 'chimerax/shortcuts/icons/silhouette.png'
33898adding 'chimerax/shortcuts/icons/simplelight.png'
33899adding 'chimerax/shortcuts/icons/slab.png'
33900adding 'chimerax/shortcuts/icons/smooth.png'
33901adding 'chimerax/shortcuts/icons/softlight.png'
33902adding 'chimerax/shortcuts/icons/sphere.png'
33903adding 'chimerax/shortcuts/icons/step1.png'
33904adding 'chimerax/shortcuts/icons/step2.png'
33905adding 'chimerax/shortcuts/icons/step4.png'
33906adding 'chimerax/shortcuts/icons/stick.png'
33907adding 'chimerax/shortcuts/icons/surf.png'
33908adding 'chimerax/shortcuts/icons/surfhide-dark.png'
33909adding 'chimerax/shortcuts/icons/surfhide.png'
33910adding 'chimerax/shortcuts/icons/surfshow.png'
33911adding 'chimerax/shortcuts/icons/video.png'
33912adding 'chimerax/shortcuts/icons/viewall-dark.png'
33913adding 'chimerax/shortcuts/icons/viewall.png'
33914adding 'chimerax/shortcuts/icons/viewsel-dark.png'
33915adding 'chimerax/shortcuts/icons/viewsel.png'
33916adding 'chimerax/shortcuts/icons/volzone.png'
33917adding 'chimerax/shortcuts/icons/vr.png'
33918adding 'chimerax/shortcuts/icons/whitebg.png'
33919adding 'chimerax/shortcuts/icons/xr.png'
33920adding 'chimerax/shortcuts/icons/xyzslice.png'
33921adding 'chimerax_shortcuts-1.2.1.dist-info/METADATA'
33922adding 'chimerax_shortcuts-1.2.1.dist-info/WHEEL'
33923adding 'chimerax_shortcuts-1.2.1.dist-info/top_level.txt'
33924adding 'chimerax_shortcuts-1.2.1.dist-info/RECORD'
33925removing build\bdist.win-amd64\wheel
33926Distribution is in .\dist\ChimeraX_Shortcuts-1.2.1-py3-none-any.whl
33927INFO:
33928
33929make sync
33930make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
33931cp -av dist/*.whl ../../../build/sync
33932'dist/chimerax_shortcuts-1.2.1-py3-none-any.whl' -> '../../../build/sync/chimerax_shortcuts-1.2.1-py3-none-any.whl'
33933make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
33934make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/shortcuts'
33935make -C show_sequences build
33936make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
33937if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
33938 echo "missing ChimeraX application's python"; exit 1; \
33939else \
33940 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
33941fi
33942INFO:
33943Executing: devel build . exit true
33944C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
33945!!
33946
33947 ********************************************************************************
33948 Please consider removing the following classifiers in favor of a SPDX license expression:
33949
33950 License :: Free for non-commercial use
33951
33952 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
33953 ********************************************************************************
33954
33955!!
33956 self._finalize_license_expression()
33957running build
33958running build_py
33959creating build\lib\chimerax\show_sequences
33960copying src\tool.py -> build\lib\chimerax\show_sequences
33961copying src\__init__.py -> build\lib\chimerax\show_sequences
33962running bdist_wheel
33963installing to build\bdist.win-amd64\wheel
33964running install
33965running install_lib
33966creating build\bdist.win-amd64\wheel
33967creating build\bdist.win-amd64\wheel\chimerax
33968creating build\bdist.win-amd64\wheel\chimerax\show_sequences
33969copying build\lib\chimerax\show_sequences\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\show_sequences
33970copying build\lib\chimerax\show_sequences\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\show_sequences
33971running install_egg_info
33972running egg_info
33973creating ChimeraX_ShowSequences.egg-info
33974writing ChimeraX_ShowSequences.egg-info\PKG-INFO
33975writing dependency_links to ChimeraX_ShowSequences.egg-info\dependency_links.txt
33976writing requirements to ChimeraX_ShowSequences.egg-info\requires.txt
33977writing top-level names to ChimeraX_ShowSequences.egg-info\top_level.txt
33978writing manifest file 'ChimeraX_ShowSequences.egg-info\SOURCES.txt'
33979reading manifest file 'ChimeraX_ShowSequences.egg-info\SOURCES.txt'
33980writing manifest file 'ChimeraX_ShowSequences.egg-info\SOURCES.txt'
33981Copying ChimeraX_ShowSequences.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ShowSequences-1.0.3-py3.11.egg-info
33982running install_scripts
33983creating build\bdist.win-amd64\wheel\chimerax_showsequences-1.0.3.dist-info\WHEEL
33984creating 'dist\chimerax_showsequences-1.0.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
33985adding 'chimerax/show_sequences/__init__.py'
33986adding 'chimerax/show_sequences/tool.py'
33987adding 'chimerax_showsequences-1.0.3.dist-info/METADATA'
33988adding 'chimerax_showsequences-1.0.3.dist-info/WHEEL'
33989adding 'chimerax_showsequences-1.0.3.dist-info/top_level.txt'
33990adding 'chimerax_showsequences-1.0.3.dist-info/RECORD'
33991removing build\bdist.win-amd64\wheel
33992Distribution is in .\dist\ChimeraX_ShowSequences-1.0.3-py3-none-any.whl
33993INFO:
33994
33995make sync
33996make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
33997cp -av dist/*.whl ../../../build/sync
33998'dist/chimerax_showsequences-1.0.3-py3-none-any.whl' -> '../../../build/sync/chimerax_showsequences-1.0.3-py3-none-any.whl'
33999make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
34000make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/show_sequences'
34001make -C sideview build
34002make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
34003if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34004 echo "missing ChimeraX application's python"; exit 1; \
34005else \
34006 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34007fi
34008INFO:
34009Executing: devel build . exit true
34010C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34011!!
34012
34013 ********************************************************************************
34014 Please consider removing the following classifiers in favor of a SPDX license expression:
34015
34016 License :: Free for non-commercial use
34017
34018 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34019 ********************************************************************************
34020
34021!!
34022 self._finalize_license_expression()
34023running build
34024running build_py
34025creating build\lib\chimerax\sideview
34026copying src\tool.py -> build\lib\chimerax\sideview
34027copying src\__init__.py -> build\lib\chimerax\sideview
34028running bdist_wheel
34029installing to build\bdist.win-amd64\wheel
34030running install
34031running install_lib
34032creating build\bdist.win-amd64\wheel
34033creating build\bdist.win-amd64\wheel\chimerax
34034creating build\bdist.win-amd64\wheel\chimerax\sideview
34035copying build\lib\chimerax\sideview\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\sideview
34036copying build\lib\chimerax\sideview\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\sideview
34037running install_egg_info
34038running egg_info
34039creating ChimeraX_SideView.egg-info
34040writing ChimeraX_SideView.egg-info\PKG-INFO
34041writing dependency_links to ChimeraX_SideView.egg-info\dependency_links.txt
34042writing requirements to ChimeraX_SideView.egg-info\requires.txt
34043writing top-level names to ChimeraX_SideView.egg-info\top_level.txt
34044writing manifest file 'ChimeraX_SideView.egg-info\SOURCES.txt'
34045reading manifest file 'ChimeraX_SideView.egg-info\SOURCES.txt'
34046writing manifest file 'ChimeraX_SideView.egg-info\SOURCES.txt'
34047Copying ChimeraX_SideView.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SideView-1.0.1-py3.11.egg-info
34048running install_scripts
34049creating build\bdist.win-amd64\wheel\chimerax_sideview-1.0.1.dist-info\WHEEL
34050creating 'dist\chimerax_sideview-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
34051adding 'chimerax/sideview/__init__.py'
34052adding 'chimerax/sideview/tool.py'
34053adding 'chimerax_sideview-1.0.1.dist-info/METADATA'
34054adding 'chimerax_sideview-1.0.1.dist-info/WHEEL'
34055adding 'chimerax_sideview-1.0.1.dist-info/top_level.txt'
34056adding 'chimerax_sideview-1.0.1.dist-info/RECORD'
34057removing build\bdist.win-amd64\wheel
34058Distribution is in .\dist\ChimeraX_SideView-1.0.1-py3-none-any.whl
34059INFO:
34060
34061make sync
34062make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
34063cp -av dist/*.whl ../../../build/sync
34064'dist/chimerax_sideview-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_sideview-1.0.1-py3-none-any.whl'
34065make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
34066make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sideview'
34067make -C sim_matrices build
34068make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
34069if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34070 echo "missing ChimeraX application's python"; exit 1; \
34071else \
34072 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34073fi
34074INFO:
34075Executing: devel build . exit true
34076C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34077!!
34078
34079 ********************************************************************************
34080 Please consider removing the following classifiers in favor of a SPDX license expression:
34081
34082 License :: Free for non-commercial use
34083
34084 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34085 ********************************************************************************
34086
34087!!
34088 self._finalize_license_expression()
34089running build
34090running build_py
34091creating build\lib\chimerax\sim_matrices
34092copying src\options.py -> build\lib\chimerax\sim_matrices
34093copying src\__init__.py -> build\lib\chimerax\sim_matrices
34094creating build\lib\chimerax\sim_matrices\matrices
34095copying src\matrices\BLOSUM-100.matrix -> build\lib\chimerax\sim_matrices\matrices
34096copying src\matrices\BLOSUM-30.matrix -> build\lib\chimerax\sim_matrices\matrices
34097copying src\matrices\BLOSUM-35.matrix -> build\lib\chimerax\sim_matrices\matrices
34098copying src\matrices\BLOSUM-40.matrix -> build\lib\chimerax\sim_matrices\matrices
34099copying src\matrices\BLOSUM-45.matrix -> build\lib\chimerax\sim_matrices\matrices
34100copying src\matrices\BLOSUM-50.matrix -> build\lib\chimerax\sim_matrices\matrices
34101copying src\matrices\BLOSUM-55.matrix -> build\lib\chimerax\sim_matrices\matrices
34102copying src\matrices\BLOSUM-60.matrix -> build\lib\chimerax\sim_matrices\matrices
34103copying src\matrices\BLOSUM-62.matrix -> build\lib\chimerax\sim_matrices\matrices
34104copying src\matrices\BLOSUM-65.matrix -> build\lib\chimerax\sim_matrices\matrices
34105copying src\matrices\BLOSUM-70.matrix -> build\lib\chimerax\sim_matrices\matrices
34106copying src\matrices\BLOSUM-75.matrix -> build\lib\chimerax\sim_matrices\matrices
34107copying src\matrices\BLOSUM-80.matrix -> build\lib\chimerax\sim_matrices\matrices
34108copying src\matrices\BLOSUM-85.matrix -> build\lib\chimerax\sim_matrices\matrices
34109copying src\matrices\BLOSUM-90.matrix -> build\lib\chimerax\sim_matrices\matrices
34110copying src\matrices\BLOSUM-N.matrix -> build\lib\chimerax\sim_matrices\matrices
34111copying src\matrices\Grantham.matrix -> build\lib\chimerax\sim_matrices\matrices
34112copying src\matrices\HSDM.matrix -> build\lib\chimerax\sim_matrices\matrices
34113copying src\matrices\PAM-120.matrix -> build\lib\chimerax\sim_matrices\matrices
34114copying src\matrices\PAM-150.matrix -> build\lib\chimerax\sim_matrices\matrices
34115copying src\matrices\PAM-250.matrix -> build\lib\chimerax\sim_matrices\matrices
34116copying src\matrices\PAM-40.matrix -> build\lib\chimerax\sim_matrices\matrices
34117copying src\matrices\SDM.matrix -> build\lib\chimerax\sim_matrices\matrices
34118copying src\matrices\Nucleic.dnamatrix -> build\lib\chimerax\sim_matrices\matrices
34119running bdist_wheel
34120installing to build\bdist.win-amd64\wheel
34121running install
34122running install_lib
34123creating build\bdist.win-amd64\wheel
34124creating build\bdist.win-amd64\wheel\chimerax
34125creating build\bdist.win-amd64\wheel\chimerax\sim_matrices
34126creating build\bdist.win-amd64\wheel\chimerax\sim_matrices\matrices
34127copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-100.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34128copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-30.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34129copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-35.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34130copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-40.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34131copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-45.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34132copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-50.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34133copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-55.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34134copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-60.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34135copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-62.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34136copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-65.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34137copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-70.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34138copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-75.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34139copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-80.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34140copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-85.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34141copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-90.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34142copying build\lib\chimerax\sim_matrices\matrices\BLOSUM-N.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34143copying build\lib\chimerax\sim_matrices\matrices\Grantham.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34144copying build\lib\chimerax\sim_matrices\matrices\HSDM.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34145copying build\lib\chimerax\sim_matrices\matrices\Nucleic.dnamatrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34146copying build\lib\chimerax\sim_matrices\matrices\PAM-120.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34147copying build\lib\chimerax\sim_matrices\matrices\PAM-150.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34148copying build\lib\chimerax\sim_matrices\matrices\PAM-250.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34149copying build\lib\chimerax\sim_matrices\matrices\PAM-40.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34150copying build\lib\chimerax\sim_matrices\matrices\SDM.matrix -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices\matrices
34151copying build\lib\chimerax\sim_matrices\options.py -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices
34152copying build\lib\chimerax\sim_matrices\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\sim_matrices
34153running install_egg_info
34154running egg_info
34155creating ChimeraX_AlignmentMatrices.egg-info
34156writing ChimeraX_AlignmentMatrices.egg-info\PKG-INFO
34157writing dependency_links to ChimeraX_AlignmentMatrices.egg-info\dependency_links.txt
34158writing requirements to ChimeraX_AlignmentMatrices.egg-info\requires.txt
34159writing top-level names to ChimeraX_AlignmentMatrices.egg-info\top_level.txt
34160writing manifest file 'ChimeraX_AlignmentMatrices.egg-info\SOURCES.txt'
34161reading manifest file 'ChimeraX_AlignmentMatrices.egg-info\SOURCES.txt'
34162writing manifest file 'ChimeraX_AlignmentMatrices.egg-info\SOURCES.txt'
34163Copying ChimeraX_AlignmentMatrices.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_AlignmentMatrices-2.1-py3.11.egg-info
34164running install_scripts
34165creating build\bdist.win-amd64\wheel\chimerax_alignmentmatrices-2.1.dist-info\WHEEL
34166creating 'dist\chimerax_alignmentmatrices-2.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
34167adding 'chimerax/sim_matrices/__init__.py'
34168adding 'chimerax/sim_matrices/options.py'
34169adding 'chimerax/sim_matrices/matrices/BLOSUM-100.matrix'
34170adding 'chimerax/sim_matrices/matrices/BLOSUM-30.matrix'
34171adding 'chimerax/sim_matrices/matrices/BLOSUM-35.matrix'
34172adding 'chimerax/sim_matrices/matrices/BLOSUM-40.matrix'
34173adding 'chimerax/sim_matrices/matrices/BLOSUM-45.matrix'
34174adding 'chimerax/sim_matrices/matrices/BLOSUM-50.matrix'
34175adding 'chimerax/sim_matrices/matrices/BLOSUM-55.matrix'
34176adding 'chimerax/sim_matrices/matrices/BLOSUM-60.matrix'
34177adding 'chimerax/sim_matrices/matrices/BLOSUM-62.matrix'
34178adding 'chimerax/sim_matrices/matrices/BLOSUM-65.matrix'
34179adding 'chimerax/sim_matrices/matrices/BLOSUM-70.matrix'
34180adding 'chimerax/sim_matrices/matrices/BLOSUM-75.matrix'
34181adding 'chimerax/sim_matrices/matrices/BLOSUM-80.matrix'
34182adding 'chimerax/sim_matrices/matrices/BLOSUM-85.matrix'
34183adding 'chimerax/sim_matrices/matrices/BLOSUM-90.matrix'
34184adding 'chimerax/sim_matrices/matrices/BLOSUM-N.matrix'
34185adding 'chimerax/sim_matrices/matrices/Grantham.matrix'
34186adding 'chimerax/sim_matrices/matrices/HSDM.matrix'
34187adding 'chimerax/sim_matrices/matrices/Nucleic.dnamatrix'
34188adding 'chimerax/sim_matrices/matrices/PAM-120.matrix'
34189adding 'chimerax/sim_matrices/matrices/PAM-150.matrix'
34190adding 'chimerax/sim_matrices/matrices/PAM-250.matrix'
34191adding 'chimerax/sim_matrices/matrices/PAM-40.matrix'
34192adding 'chimerax/sim_matrices/matrices/SDM.matrix'
34193adding 'chimerax_alignmentmatrices-2.1.dist-info/METADATA'
34194adding 'chimerax_alignmentmatrices-2.1.dist-info/WHEEL'
34195adding 'chimerax_alignmentmatrices-2.1.dist-info/top_level.txt'
34196adding 'chimerax_alignmentmatrices-2.1.dist-info/RECORD'
34197removing build\bdist.win-amd64\wheel
34198Distribution is in .\dist\ChimeraX_AlignmentMatrices-2.1-py3-none-any.whl
34199INFO:
34200
34201make sync
34202make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
34203cp -av dist/*.whl ../../../build/sync
34204'dist/chimerax_alignmentmatrices-2.1-py3-none-any.whl' -> '../../../build/sync/chimerax_alignmentmatrices-2.1-py3-none-any.whl'
34205make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
34206make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/sim_matrices'
34207make -C similarstructures build
34208make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
34209if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34210 echo "missing ChimeraX application's python"; exit 1; \
34211else \
34212 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34213fi
34214INFO:
34215Executing: devel build . exit true
34216C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34217!!
34218
34219 ********************************************************************************
34220 Please consider removing the following classifiers in favor of a SPDX license expression:
34221
34222 License :: Free for non-commercial use
34223
34224 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34225 ********************************************************************************
34226
34227!!
34228 self._finalize_license_expression()
34229running build
34230running build_py
34231creating build\lib\chimerax\similarstructures
34232copying src\blast_search.py -> build\lib\chimerax\similarstructures
34233copying src\cluster.py -> build\lib\chimerax\similarstructures
34234copying src\coords.py -> build\lib\chimerax\similarstructures
34235copying src\foldseek_search.py -> build\lib\chimerax\similarstructures
34236copying src\gui.py -> build\lib\chimerax\similarstructures
34237copying src\lddt.py -> build\lib\chimerax\similarstructures
34238copying src\ligands.py -> build\lib\chimerax\similarstructures
34239copying src\mmseqs2_search.py -> build\lib\chimerax\similarstructures
34240copying src\sequences.py -> build\lib\chimerax\similarstructures
34241copying src\simstruct.py -> build\lib\chimerax\similarstructures
34242copying src\traces.py -> build\lib\chimerax\similarstructures
34243copying src\__init__.py -> build\lib\chimerax\similarstructures
34244running bdist_wheel
34245installing to build\bdist.win-amd64\wheel
34246running install
34247running install_lib
34248creating build\bdist.win-amd64\wheel
34249creating build\bdist.win-amd64\wheel\chimerax
34250creating build\bdist.win-amd64\wheel\chimerax\similarstructures
34251copying build\lib\chimerax\similarstructures\blast_search.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34252copying build\lib\chimerax\similarstructures\cluster.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34253copying build\lib\chimerax\similarstructures\coords.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34254copying build\lib\chimerax\similarstructures\foldseek_search.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34255copying build\lib\chimerax\similarstructures\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34256copying build\lib\chimerax\similarstructures\lddt.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34257copying build\lib\chimerax\similarstructures\ligands.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34258copying build\lib\chimerax\similarstructures\mmseqs2_search.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34259copying build\lib\chimerax\similarstructures\sequences.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34260copying build\lib\chimerax\similarstructures\simstruct.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34261copying build\lib\chimerax\similarstructures\traces.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34262copying build\lib\chimerax\similarstructures\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\similarstructures
34263running install_egg_info
34264running egg_info
34265creating ChimeraX_SimilarStructures.egg-info
34266writing ChimeraX_SimilarStructures.egg-info\PKG-INFO
34267writing dependency_links to ChimeraX_SimilarStructures.egg-info\dependency_links.txt
34268writing requirements to ChimeraX_SimilarStructures.egg-info\requires.txt
34269writing top-level names to ChimeraX_SimilarStructures.egg-info\top_level.txt
34270writing manifest file 'ChimeraX_SimilarStructures.egg-info\SOURCES.txt'
34271reading manifest file 'ChimeraX_SimilarStructures.egg-info\SOURCES.txt'
34272writing manifest file 'ChimeraX_SimilarStructures.egg-info\SOURCES.txt'
34273Copying ChimeraX_SimilarStructures.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SimilarStructures-1.0.1-py3.11.egg-info
34274running install_scripts
34275creating build\bdist.win-amd64\wheel\chimerax_similarstructures-1.0.1.dist-info\WHEEL
34276creating 'dist\chimerax_similarstructures-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
34277adding 'chimerax/similarstructures/__init__.py'
34278adding 'chimerax/similarstructures/blast_search.py'
34279adding 'chimerax/similarstructures/cluster.py'
34280adding 'chimerax/similarstructures/coords.py'
34281adding 'chimerax/similarstructures/foldseek_search.py'
34282adding 'chimerax/similarstructures/gui.py'
34283adding 'chimerax/similarstructures/lddt.py'
34284adding 'chimerax/similarstructures/ligands.py'
34285adding 'chimerax/similarstructures/mmseqs2_search.py'
34286adding 'chimerax/similarstructures/sequences.py'
34287adding 'chimerax/similarstructures/simstruct.py'
34288adding 'chimerax/similarstructures/traces.py'
34289adding 'chimerax_similarstructures-1.0.1.dist-info/METADATA'
34290adding 'chimerax_similarstructures-1.0.1.dist-info/WHEEL'
34291adding 'chimerax_similarstructures-1.0.1.dist-info/top_level.txt'
34292adding 'chimerax_similarstructures-1.0.1.dist-info/RECORD'
34293removing build\bdist.win-amd64\wheel
34294Distribution is in .\dist\ChimeraX_SimilarStructures-1.0.1-py3-none-any.whl
34295INFO:
34296
34297make sync
34298make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
34299cp -av dist/*.whl ../../../build/sync
34300'dist/chimerax_similarstructures-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_similarstructures-1.0.1-py3-none-any.whl'
34301make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
34302make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/similarstructures'
34303make -C smiles build
34304make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
34305if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34306 echo "missing ChimeraX application's python"; exit 1; \
34307else \
34308 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34309fi
34310INFO:
34311Executing: devel build . exit true
34312C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34313!!
34314
34315 ********************************************************************************
34316 Please consider removing the following classifiers in favor of a SPDX license expression:
34317
34318 License :: Free for non-commercial use
34319
34320 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34321 ********************************************************************************
34322
34323!!
34324 self._finalize_license_expression()
34325running build
34326running build_py
34327creating build\lib\chimerax\smiles
34328copying src\build_ui.py -> build\lib\chimerax\smiles
34329copying src\smiles.py -> build\lib\chimerax\smiles
34330copying src\__init__.py -> build\lib\chimerax\smiles
34331running bdist_wheel
34332installing to build\bdist.win-amd64\wheel
34333running install
34334running install_lib
34335creating build\bdist.win-amd64\wheel
34336creating build\bdist.win-amd64\wheel\chimerax
34337creating build\bdist.win-amd64\wheel\chimerax\smiles
34338copying build\lib\chimerax\smiles\build_ui.py -> build\bdist.win-amd64\wheel\.\chimerax\smiles
34339copying build\lib\chimerax\smiles\smiles.py -> build\bdist.win-amd64\wheel\.\chimerax\smiles
34340copying build\lib\chimerax\smiles\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\smiles
34341running install_egg_info
34342running egg_info
34343creating ChimeraX_Smiles.egg-info
34344writing ChimeraX_Smiles.egg-info\PKG-INFO
34345writing dependency_links to ChimeraX_Smiles.egg-info\dependency_links.txt
34346writing requirements to ChimeraX_Smiles.egg-info\requires.txt
34347writing top-level names to ChimeraX_Smiles.egg-info\top_level.txt
34348writing manifest file 'ChimeraX_Smiles.egg-info\SOURCES.txt'
34349reading manifest file 'ChimeraX_Smiles.egg-info\SOURCES.txt'
34350writing manifest file 'ChimeraX_Smiles.egg-info\SOURCES.txt'
34351Copying ChimeraX_Smiles.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Smiles-2.1.2-py3.11.egg-info
34352running install_scripts
34353creating build\bdist.win-amd64\wheel\chimerax_smiles-2.1.2.dist-info\WHEEL
34354creating 'dist\chimerax_smiles-2.1.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
34355adding 'chimerax/smiles/__init__.py'
34356adding 'chimerax/smiles/build_ui.py'
34357adding 'chimerax/smiles/smiles.py'
34358adding 'chimerax_smiles-2.1.2.dist-info/METADATA'
34359adding 'chimerax_smiles-2.1.2.dist-info/WHEEL'
34360adding 'chimerax_smiles-2.1.2.dist-info/top_level.txt'
34361adding 'chimerax_smiles-2.1.2.dist-info/RECORD'
34362removing build\bdist.win-amd64\wheel
34363Distribution is in .\dist\ChimeraX_Smiles-2.1.2-py3-none-any.whl
34364INFO:
34365
34366make sync
34367make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
34368cp -av dist/*.whl ../../../build/sync
34369'dist/chimerax_smiles-2.1.2-py3-none-any.whl' -> '../../../build/sync/chimerax_smiles-2.1.2-py3-none-any.whl'
34370make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
34371make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smiles'
34372make -C smooth_lines build
34373make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
34374if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34375 echo "missing ChimeraX application's python"; exit 1; \
34376else \
34377 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34378fi
34379INFO:
34380Executing: devel build . exit true
34381C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34382!!
34383
34384 ********************************************************************************
34385 Please consider removing the following classifiers in favor of a SPDX license expression:
34386
34387 License :: Free for non-commercial use
34388
34389 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34390 ********************************************************************************
34391
34392!!
34393 self._finalize_license_expression()
34394running build
34395running build_py
34396creating build\lib\chimerax\smooth_lines
34397copying src\smoothlines.py -> build\lib\chimerax\smooth_lines
34398copying src\__init__.py -> build\lib\chimerax\smooth_lines
34399running bdist_wheel
34400installing to build\bdist.win-amd64\wheel
34401running install
34402running install_lib
34403creating build\bdist.win-amd64\wheel
34404creating build\bdist.win-amd64\wheel\chimerax
34405creating build\bdist.win-amd64\wheel\chimerax\smooth_lines
34406copying build\lib\chimerax\smooth_lines\smoothlines.py -> build\bdist.win-amd64\wheel\.\chimerax\smooth_lines
34407copying build\lib\chimerax\smooth_lines\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\smooth_lines
34408running install_egg_info
34409running egg_info
34410creating ChimeraX_SmoothLines.egg-info
34411writing ChimeraX_SmoothLines.egg-info\PKG-INFO
34412writing dependency_links to ChimeraX_SmoothLines.egg-info\dependency_links.txt
34413writing requirements to ChimeraX_SmoothLines.egg-info\requires.txt
34414writing top-level names to ChimeraX_SmoothLines.egg-info\top_level.txt
34415writing manifest file 'ChimeraX_SmoothLines.egg-info\SOURCES.txt'
34416reading manifest file 'ChimeraX_SmoothLines.egg-info\SOURCES.txt'
34417writing manifest file 'ChimeraX_SmoothLines.egg-info\SOURCES.txt'
34418Copying ChimeraX_SmoothLines.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SmoothLines-1.0-py3.11.egg-info
34419running install_scripts
34420creating build\bdist.win-amd64\wheel\chimerax_smoothlines-1.0.dist-info\WHEEL
34421creating 'dist\chimerax_smoothlines-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
34422adding 'chimerax/smooth_lines/__init__.py'
34423adding 'chimerax/smooth_lines/smoothlines.py'
34424adding 'chimerax_smoothlines-1.0.dist-info/METADATA'
34425adding 'chimerax_smoothlines-1.0.dist-info/WHEEL'
34426adding 'chimerax_smoothlines-1.0.dist-info/top_level.txt'
34427adding 'chimerax_smoothlines-1.0.dist-info/RECORD'
34428removing build\bdist.win-amd64\wheel
34429Distribution is in .\dist\ChimeraX_SmoothLines-1.0-py3-none-any.whl
34430INFO:
34431
34432make sync
34433make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
34434cp -av dist/*.whl ../../../build/sync
34435'dist/chimerax_smoothlines-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_smoothlines-1.0-py3-none-any.whl'
34436make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
34437make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/smooth_lines'
34438make -C spacenavigator build
34439make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
34440if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34441 echo "missing ChimeraX application's python"; exit 1; \
34442else \
34443 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34444fi
34445INFO:
34446Executing: devel build . exit true
34447C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\_distutils\dist.py:289: UserWarning: Unknown distribution option: 'distclass'
34448 warnings.warn(msg)
34449C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
34450!!
34451
34452 ********************************************************************************
34453 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
34454
34455 By 2026-Feb-18, you need to update your project and remove deprecated calls
34456 or your builds will no longer be supported.
34457
34458 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34459 ********************************************************************************
34460
34461!!
34462 corresp(dist, value, root_dir)
34463running build
34464running build_py
34465creating build\lib.win-amd64-cpython-311\chimerax\spacenavigator
34466copying src\snav.py -> build\lib.win-amd64-cpython-311\chimerax\spacenavigator
34467copying src\snavmac.py -> build\lib.win-amd64-cpython-311\chimerax\spacenavigator
34468copying src\snavwin32.py -> build\lib.win-amd64-cpython-311\chimerax\spacenavigator
34469copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\spacenavigator
34470running build_ext
34471running bdist_wheel
34472installing to build\bdist.win-amd64\wheel
34473running install
34474running install_lib
34475running build_ext
34476creating build\bdist.win-amd64\wheel
34477creating build\bdist.win-amd64\wheel\chimerax
34478creating build\bdist.win-amd64\wheel\chimerax\spacenavigator
34479copying build\lib.win-amd64-cpython-311\chimerax\spacenavigator\snav.py -> build\bdist.win-amd64\wheel\.\chimerax\spacenavigator
34480copying build\lib.win-amd64-cpython-311\chimerax\spacenavigator\snavmac.py -> build\bdist.win-amd64\wheel\.\chimerax\spacenavigator
34481copying build\lib.win-amd64-cpython-311\chimerax\spacenavigator\snavwin32.py -> build\bdist.win-amd64\wheel\.\chimerax\spacenavigator
34482copying build\lib.win-amd64-cpython-311\chimerax\spacenavigator\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\spacenavigator
34483running install_egg_info
34484running egg_info
34485creating ChimeraX_SpaceNavigator.egg-info
34486writing ChimeraX_SpaceNavigator.egg-info\PKG-INFO
34487writing dependency_links to ChimeraX_SpaceNavigator.egg-info\dependency_links.txt
34488writing requirements to ChimeraX_SpaceNavigator.egg-info\requires.txt
34489writing top-level names to ChimeraX_SpaceNavigator.egg-info\top_level.txt
34490writing manifest file 'ChimeraX_SpaceNavigator.egg-info\SOURCES.txt'
34491reading manifest file 'ChimeraX_SpaceNavigator.egg-info\SOURCES.txt'
34492writing manifest file 'ChimeraX_SpaceNavigator.egg-info\SOURCES.txt'
34493Copying ChimeraX_SpaceNavigator.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SpaceNavigator-1.0-py3.11.egg-info
34494running install_scripts
34495C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
34496 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
34497creating build\bdist.win-amd64\wheel\chimerax_spacenavigator-1.0.dist-info\WHEEL
34498creating 'dist\chimerax_spacenavigator-1.0-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
34499adding 'chimerax/spacenavigator/__init__.py'
34500adding 'chimerax/spacenavigator/snav.py'
34501adding 'chimerax/spacenavigator/snavmac.py'
34502adding 'chimerax/spacenavigator/snavwin32.py'
34503adding 'chimerax_spacenavigator-1.0.dist-info/METADATA'
34504adding 'chimerax_spacenavigator-1.0.dist-info/WHEEL'
34505adding 'chimerax_spacenavigator-1.0.dist-info/top_level.txt'
34506adding 'chimerax_spacenavigator-1.0.dist-info/RECORD'
34507removing build\bdist.win-amd64\wheel
34508Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\spacenavigator\dist\chimerax_spacenavigator-1.0-cp311-cp311-win_amd64.whl
34509INFO:
34510
34511make sync
34512make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
34513cp -av dist/*.whl ../../../build/sync
34514'dist/chimerax_spacenavigator-1.0-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_spacenavigator-1.0-cp311-cp311-win_amd64.whl'
34515make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
34516make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/spacenavigator'
34517make -C std_commands build
34518make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
34519if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34520 echo "missing ChimeraX application's python"; exit 1; \
34521else \
34522 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34523fi
34524INFO:
34525Executing: devel build . exit true
34526C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34527!!
34528
34529 ********************************************************************************
34530 Please consider removing the following classifiers in favor of a SPDX license expression:
34531
34532 License :: Free for non-commercial use
34533
34534 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34535 ********************************************************************************
34536
34537!!
34538 self._finalize_license_expression()
34539running build
34540running build_py
34541creating build\lib\chimerax\std_commands
34542copying src\alias.py -> build\lib\chimerax\std_commands
34543copying src\align.py -> build\lib\chimerax\std_commands
34544copying src\altlocs.py -> build\lib\chimerax\std_commands
34545copying src\angle.py -> build\lib\chimerax\std_commands
34546copying src\camera.py -> build\lib\chimerax\std_commands
34547copying src\cartoon.py -> build\lib\chimerax\std_commands
34548copying src\cd.py -> build\lib\chimerax\std_commands
34549copying src\clip.py -> build\lib\chimerax\std_commands
34550copying src\close.py -> build\lib\chimerax\std_commands
34551copying src\cofr.py -> build\lib\chimerax\std_commands
34552copying src\color.py -> build\lib\chimerax\std_commands
34553copying src\colorname.py -> build\lib\chimerax\std_commands
34554copying src\coordset.py -> build\lib\chimerax\std_commands
34555copying src\coordset_gui.py -> build\lib\chimerax\std_commands
34556copying src\crossfade.py -> build\lib\chimerax\std_commands
34557copying src\defattr.py -> build\lib\chimerax\std_commands
34558copying src\defattr_gui.py -> build\lib\chimerax\std_commands
34559copying src\delete.py -> build\lib\chimerax\std_commands
34560copying src\dssp.py -> build\lib\chimerax\std_commands
34561copying src\exit.py -> build\lib\chimerax\std_commands
34562copying src\fly.py -> build\lib\chimerax\std_commands
34563copying src\getcrd.py -> build\lib\chimerax\std_commands
34564copying src\graphics.py -> build\lib\chimerax\std_commands
34565copying src\hide.py -> build\lib\chimerax\std_commands
34566copying src\lighting.py -> build\lib\chimerax\std_commands
34567copying src\material.py -> build\lib\chimerax\std_commands
34568copying src\measure_buriedarea.py -> build\lib\chimerax\std_commands
34569copying src\measure_center.py -> build\lib\chimerax\std_commands
34570copying src\measure_convexity.py -> build\lib\chimerax\std_commands
34571copying src\measure_correlation.py -> build\lib\chimerax\std_commands
34572copying src\measure_inertia.py -> build\lib\chimerax\std_commands
34573copying src\measure_length.py -> build\lib\chimerax\std_commands
34574copying src\measure_rotation.py -> build\lib\chimerax\std_commands
34575copying src\measure_symmetry.py -> build\lib\chimerax\std_commands
34576copying src\measure_weight.py -> build\lib\chimerax\std_commands
34577copying src\move.py -> build\lib\chimerax\std_commands
34578copying src\move_cofr.py -> build\lib\chimerax\std_commands
34579copying src\palette.py -> build\lib\chimerax\std_commands
34580copying src\perframe.py -> build\lib\chimerax\std_commands
34581copying src\pwd.py -> build\lib\chimerax\std_commands
34582copying src\rainbow.py -> build\lib\chimerax\std_commands
34583copying src\rename.py -> build\lib\chimerax\std_commands
34584copying src\ribbon.py -> build\lib\chimerax\std_commands
34585copying src\rmsd.py -> build\lib\chimerax\std_commands
34586copying src\rock.py -> build\lib\chimerax\std_commands
34587copying src\roll.py -> build\lib\chimerax\std_commands
34588copying src\runscript.py -> build\lib\chimerax\std_commands
34589copying src\select.py -> build\lib\chimerax\std_commands
34590copying src\selectors.py -> build\lib\chimerax\std_commands
34591copying src\set.py -> build\lib\chimerax\std_commands
34592copying src\setattr.py -> build\lib\chimerax\std_commands
34593copying src\show.py -> build\lib\chimerax\std_commands
34594copying src\size.py -> build\lib\chimerax\std_commands
34595copying src\split.py -> build\lib\chimerax\std_commands
34596copying src\stop.py -> build\lib\chimerax\std_commands
34597copying src\style.py -> build\lib\chimerax\std_commands
34598copying src\sym.py -> build\lib\chimerax\std_commands
34599copying src\tile.py -> build\lib\chimerax\std_commands
34600copying src\time.py -> build\lib\chimerax\std_commands
34601copying src\transparency.py -> build\lib\chimerax\std_commands
34602copying src\turn.py -> build\lib\chimerax\std_commands
34603copying src\undo.py -> build\lib\chimerax\std_commands
34604copying src\usage.py -> build\lib\chimerax\std_commands
34605copying src\version.py -> build\lib\chimerax\std_commands
34606copying src\view.py -> build\lib\chimerax\std_commands
34607copying src\wait.py -> build\lib\chimerax\std_commands
34608copying src\windowsize.py -> build\lib\chimerax\std_commands
34609copying src\wobble.py -> build\lib\chimerax\std_commands
34610copying src\zonesel.py -> build\lib\chimerax\std_commands
34611copying src\zoom.py -> build\lib\chimerax\std_commands
34612copying src\__init__.py -> build\lib\chimerax\std_commands
34613copying src\coordset.png -> build\lib\chimerax\std_commands
34614running bdist_wheel
34615installing to build\bdist.win-amd64\wheel
34616running install
34617running install_lib
34618creating build\bdist.win-amd64\wheel
34619creating build\bdist.win-amd64\wheel\chimerax
34620creating build\bdist.win-amd64\wheel\chimerax\std_commands
34621copying build\lib\chimerax\std_commands\alias.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34622copying build\lib\chimerax\std_commands\align.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34623copying build\lib\chimerax\std_commands\altlocs.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34624copying build\lib\chimerax\std_commands\angle.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34625copying build\lib\chimerax\std_commands\camera.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34626copying build\lib\chimerax\std_commands\cartoon.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34627copying build\lib\chimerax\std_commands\cd.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34628copying build\lib\chimerax\std_commands\clip.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34629copying build\lib\chimerax\std_commands\close.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34630copying build\lib\chimerax\std_commands\cofr.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34631copying build\lib\chimerax\std_commands\color.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34632copying build\lib\chimerax\std_commands\colorname.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34633copying build\lib\chimerax\std_commands\coordset.png -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34634copying build\lib\chimerax\std_commands\coordset.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34635copying build\lib\chimerax\std_commands\coordset_gui.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34636copying build\lib\chimerax\std_commands\crossfade.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34637copying build\lib\chimerax\std_commands\defattr.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34638copying build\lib\chimerax\std_commands\defattr_gui.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34639copying build\lib\chimerax\std_commands\delete.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34640copying build\lib\chimerax\std_commands\dssp.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34641copying build\lib\chimerax\std_commands\exit.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34642copying build\lib\chimerax\std_commands\fly.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34643copying build\lib\chimerax\std_commands\getcrd.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34644copying build\lib\chimerax\std_commands\graphics.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34645copying build\lib\chimerax\std_commands\hide.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34646copying build\lib\chimerax\std_commands\lighting.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34647copying build\lib\chimerax\std_commands\material.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34648copying build\lib\chimerax\std_commands\measure_buriedarea.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34649copying build\lib\chimerax\std_commands\measure_center.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34650copying build\lib\chimerax\std_commands\measure_convexity.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34651copying build\lib\chimerax\std_commands\measure_correlation.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34652copying build\lib\chimerax\std_commands\measure_inertia.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34653copying build\lib\chimerax\std_commands\measure_length.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34654copying build\lib\chimerax\std_commands\measure_rotation.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34655copying build\lib\chimerax\std_commands\measure_symmetry.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34656copying build\lib\chimerax\std_commands\measure_weight.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34657copying build\lib\chimerax\std_commands\move.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34658copying build\lib\chimerax\std_commands\move_cofr.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34659copying build\lib\chimerax\std_commands\palette.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34660copying build\lib\chimerax\std_commands\perframe.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34661copying build\lib\chimerax\std_commands\pwd.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34662copying build\lib\chimerax\std_commands\rainbow.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34663copying build\lib\chimerax\std_commands\rename.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34664copying build\lib\chimerax\std_commands\ribbon.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34665copying build\lib\chimerax\std_commands\rmsd.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34666copying build\lib\chimerax\std_commands\rock.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34667copying build\lib\chimerax\std_commands\roll.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34668copying build\lib\chimerax\std_commands\runscript.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34669copying build\lib\chimerax\std_commands\select.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34670copying build\lib\chimerax\std_commands\selectors.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34671copying build\lib\chimerax\std_commands\set.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34672copying build\lib\chimerax\std_commands\setattr.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34673copying build\lib\chimerax\std_commands\show.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34674copying build\lib\chimerax\std_commands\size.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34675copying build\lib\chimerax\std_commands\split.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34676copying build\lib\chimerax\std_commands\stop.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34677copying build\lib\chimerax\std_commands\style.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34678copying build\lib\chimerax\std_commands\sym.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34679copying build\lib\chimerax\std_commands\tile.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34680copying build\lib\chimerax\std_commands\time.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34681copying build\lib\chimerax\std_commands\transparency.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34682copying build\lib\chimerax\std_commands\turn.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34683copying build\lib\chimerax\std_commands\undo.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34684copying build\lib\chimerax\std_commands\usage.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34685copying build\lib\chimerax\std_commands\version.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34686copying build\lib\chimerax\std_commands\view.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34687copying build\lib\chimerax\std_commands\wait.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34688copying build\lib\chimerax\std_commands\windowsize.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34689copying build\lib\chimerax\std_commands\wobble.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34690copying build\lib\chimerax\std_commands\zonesel.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34691copying build\lib\chimerax\std_commands\zoom.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34692copying build\lib\chimerax\std_commands\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\std_commands
34693running install_egg_info
34694running egg_info
34695creating ChimeraX_StdCommands.egg-info
34696writing ChimeraX_StdCommands.egg-info\PKG-INFO
34697writing dependency_links to ChimeraX_StdCommands.egg-info\dependency_links.txt
34698writing requirements to ChimeraX_StdCommands.egg-info\requires.txt
34699writing top-level names to ChimeraX_StdCommands.egg-info\top_level.txt
34700writing manifest file 'ChimeraX_StdCommands.egg-info\SOURCES.txt'
34701reading manifest file 'ChimeraX_StdCommands.egg-info\SOURCES.txt'
34702writing manifest file 'ChimeraX_StdCommands.egg-info\SOURCES.txt'
34703Copying ChimeraX_StdCommands.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_StdCommands-1.19.1-py3.11.egg-info
34704running install_scripts
34705creating build\bdist.win-amd64\wheel\chimerax_stdcommands-1.19.1.dist-info\WHEEL
34706creating 'dist\chimerax_stdcommands-1.19.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
34707adding 'chimerax/std_commands/__init__.py'
34708adding 'chimerax/std_commands/alias.py'
34709adding 'chimerax/std_commands/align.py'
34710adding 'chimerax/std_commands/altlocs.py'
34711adding 'chimerax/std_commands/angle.py'
34712adding 'chimerax/std_commands/camera.py'
34713adding 'chimerax/std_commands/cartoon.py'
34714adding 'chimerax/std_commands/cd.py'
34715adding 'chimerax/std_commands/clip.py'
34716adding 'chimerax/std_commands/close.py'
34717adding 'chimerax/std_commands/cofr.py'
34718adding 'chimerax/std_commands/color.py'
34719adding 'chimerax/std_commands/colorname.py'
34720adding 'chimerax/std_commands/coordset.png'
34721adding 'chimerax/std_commands/coordset.py'
34722adding 'chimerax/std_commands/coordset_gui.py'
34723adding 'chimerax/std_commands/crossfade.py'
34724adding 'chimerax/std_commands/defattr.py'
34725adding 'chimerax/std_commands/defattr_gui.py'
34726adding 'chimerax/std_commands/delete.py'
34727adding 'chimerax/std_commands/dssp.py'
34728adding 'chimerax/std_commands/exit.py'
34729adding 'chimerax/std_commands/fly.py'
34730adding 'chimerax/std_commands/getcrd.py'
34731adding 'chimerax/std_commands/graphics.py'
34732adding 'chimerax/std_commands/hide.py'
34733adding 'chimerax/std_commands/lighting.py'
34734adding 'chimerax/std_commands/material.py'
34735adding 'chimerax/std_commands/measure_buriedarea.py'
34736adding 'chimerax/std_commands/measure_center.py'
34737adding 'chimerax/std_commands/measure_convexity.py'
34738adding 'chimerax/std_commands/measure_correlation.py'
34739adding 'chimerax/std_commands/measure_inertia.py'
34740adding 'chimerax/std_commands/measure_length.py'
34741adding 'chimerax/std_commands/measure_rotation.py'
34742adding 'chimerax/std_commands/measure_symmetry.py'
34743adding 'chimerax/std_commands/measure_weight.py'
34744adding 'chimerax/std_commands/move.py'
34745adding 'chimerax/std_commands/move_cofr.py'
34746adding 'chimerax/std_commands/palette.py'
34747adding 'chimerax/std_commands/perframe.py'
34748adding 'chimerax/std_commands/pwd.py'
34749adding 'chimerax/std_commands/rainbow.py'
34750adding 'chimerax/std_commands/rename.py'
34751adding 'chimerax/std_commands/ribbon.py'
34752adding 'chimerax/std_commands/rmsd.py'
34753adding 'chimerax/std_commands/rock.py'
34754adding 'chimerax/std_commands/roll.py'
34755adding 'chimerax/std_commands/runscript.py'
34756adding 'chimerax/std_commands/select.py'
34757adding 'chimerax/std_commands/selectors.py'
34758adding 'chimerax/std_commands/set.py'
34759adding 'chimerax/std_commands/setattr.py'
34760adding 'chimerax/std_commands/show.py'
34761adding 'chimerax/std_commands/size.py'
34762adding 'chimerax/std_commands/split.py'
34763adding 'chimerax/std_commands/stop.py'
34764adding 'chimerax/std_commands/style.py'
34765adding 'chimerax/std_commands/sym.py'
34766adding 'chimerax/std_commands/tile.py'
34767adding 'chimerax/std_commands/time.py'
34768adding 'chimerax/std_commands/transparency.py'
34769adding 'chimerax/std_commands/turn.py'
34770adding 'chimerax/std_commands/undo.py'
34771adding 'chimerax/std_commands/usage.py'
34772adding 'chimerax/std_commands/version.py'
34773adding 'chimerax/std_commands/view.py'
34774adding 'chimerax/std_commands/wait.py'
34775adding 'chimerax/std_commands/windowsize.py'
34776adding 'chimerax/std_commands/wobble.py'
34777adding 'chimerax/std_commands/zonesel.py'
34778adding 'chimerax/std_commands/zoom.py'
34779adding 'chimerax_stdcommands-1.19.1.dist-info/METADATA'
34780adding 'chimerax_stdcommands-1.19.1.dist-info/WHEEL'
34781adding 'chimerax_stdcommands-1.19.1.dist-info/top_level.txt'
34782adding 'chimerax_stdcommands-1.19.1.dist-info/RECORD'
34783removing build\bdist.win-amd64\wheel
34784Distribution is in .\dist\ChimeraX_StdCommands-1.19.1-py3-none-any.whl
34785INFO:
34786
34787make sync
34788make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
34789cp -av dist/*.whl ../../../build/sync
34790'dist/chimerax_stdcommands-1.19.1-py3-none-any.whl' -> '../../../build/sync/chimerax_stdcommands-1.19.1-py3-none-any.whl'
34791make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
34792make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/std_commands'
34793make -C stl build
34794make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
34795if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34796 echo "missing ChimeraX application's python"; exit 1; \
34797else \
34798 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34799fi
34800INFO:
34801Executing: devel build . exit true
34802C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34803!!
34804
34805 ********************************************************************************
34806 Please consider removing the following classifiers in favor of a SPDX license expression:
34807
34808 License :: Free for non-commercial use
34809
34810 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34811 ********************************************************************************
34812
34813!!
34814 self._finalize_license_expression()
34815running build
34816running build_py
34817creating build\lib.win-amd64-cpython-311\chimerax\stl
34818copying src\stl.py -> build\lib.win-amd64-cpython-311\chimerax\stl
34819copying src\stl_cpp.py -> build\lib.win-amd64-cpython-311\chimerax\stl
34820copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\stl
34821running build_ext
34822building 'chimerax.stl._stl' extension
34823creating build\temp.win-amd64-cpython-311\Release\_stl
34824"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_stl/stl.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_stl\stl.obj
34825stl.cpp
34826_stl/stl.cpp(165): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
34827_stl/stl.cpp(175): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
34828"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__stl build\temp.win-amd64-cpython-311\Release\_stl\stl.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\stl\_stl.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_stl\_stl.cp311-win_amd64.lib
34829 Creating library build\temp.win-amd64-cpython-311\Release\_stl\_stl.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_stl\_stl.cp311-win_amd64.exp
34830Generating code
34831Finished generating code
34832running bdist_wheel
34833installing to build\bdist.win-amd64\wheel
34834running install
34835running install_lib
34836running build_ext
34837creating build\bdist.win-amd64\wheel
34838creating build\bdist.win-amd64\wheel\chimerax
34839creating build\bdist.win-amd64\wheel\chimerax\stl
34840copying build\lib.win-amd64-cpython-311\chimerax\stl\stl.py -> build\bdist.win-amd64\wheel\.\chimerax\stl
34841copying build\lib.win-amd64-cpython-311\chimerax\stl\stl_cpp.py -> build\bdist.win-amd64\wheel\.\chimerax\stl
34842copying build\lib.win-amd64-cpython-311\chimerax\stl\_stl.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\stl
34843copying build\lib.win-amd64-cpython-311\chimerax\stl\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\stl
34844running install_egg_info
34845running egg_info
34846creating ChimeraX_STL.egg-info
34847writing ChimeraX_STL.egg-info\PKG-INFO
34848writing dependency_links to ChimeraX_STL.egg-info\dependency_links.txt
34849writing requirements to ChimeraX_STL.egg-info\requires.txt
34850writing top-level names to ChimeraX_STL.egg-info\top_level.txt
34851writing manifest file 'ChimeraX_STL.egg-info\SOURCES.txt'
34852reading manifest file 'ChimeraX_STL.egg-info\SOURCES.txt'
34853writing manifest file 'ChimeraX_STL.egg-info\SOURCES.txt'
34854Copying ChimeraX_STL.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_STL-1.0.1-py3.11.egg-info
34855running install_scripts
34856C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
34857 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
34858creating build\bdist.win-amd64\wheel\chimerax_stl-1.0.1.dist-info\WHEEL
34859creating 'dist\chimerax_stl-1.0.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
34860adding 'chimerax/stl/__init__.py'
34861adding 'chimerax/stl/_stl.cp311-win_amd64.pyd'
34862adding 'chimerax/stl/stl.py'
34863adding 'chimerax/stl/stl_cpp.py'
34864adding 'chimerax_stl-1.0.1.dist-info/METADATA'
34865adding 'chimerax_stl-1.0.1.dist-info/WHEEL'
34866adding 'chimerax_stl-1.0.1.dist-info/top_level.txt'
34867adding 'chimerax_stl-1.0.1.dist-info/RECORD'
34868removing build\bdist.win-amd64\wheel
34869Distribution is in .\dist\ChimeraX_STL-1.0.1-cp311-cp311-win_amd64.whl
34870INFO:
34871
34872make sync
34873make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
34874cp -av dist/*.whl ../../../build/sync
34875'dist/chimerax_stl-1.0.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_stl-1.0.1-cp311-cp311-win_amd64.whl'
34876make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
34877make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/stl'
34878make -C storm build
34879make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
34880if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34881 echo "missing ChimeraX application's python"; exit 1; \
34882else \
34883 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34884fi
34885INFO:
34886Executing: devel build . exit true
34887C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34888!!
34889
34890 ********************************************************************************
34891 Please consider removing the following classifiers in favor of a SPDX license expression:
34892
34893 License :: Free for non-commercial use
34894
34895 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34896 ********************************************************************************
34897
34898!!
34899 self._finalize_license_expression()
34900running build
34901running build_py
34902creating build\lib\chimerax\storm
34903copying src\storm.py -> build\lib\chimerax\storm
34904copying src\__init__.py -> build\lib\chimerax\storm
34905running bdist_wheel
34906installing to build\bdist.win-amd64\wheel
34907running install
34908running install_lib
34909creating build\bdist.win-amd64\wheel
34910creating build\bdist.win-amd64\wheel\chimerax
34911creating build\bdist.win-amd64\wheel\chimerax\storm
34912copying build\lib\chimerax\storm\storm.py -> build\bdist.win-amd64\wheel\.\chimerax\storm
34913copying build\lib\chimerax\storm\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\storm
34914running install_egg_info
34915running egg_info
34916creating ChimeraX_Storm.egg-info
34917writing ChimeraX_Storm.egg-info\PKG-INFO
34918writing dependency_links to ChimeraX_Storm.egg-info\dependency_links.txt
34919writing requirements to ChimeraX_Storm.egg-info\requires.txt
34920writing top-level names to ChimeraX_Storm.egg-info\top_level.txt
34921writing manifest file 'ChimeraX_Storm.egg-info\SOURCES.txt'
34922reading manifest file 'ChimeraX_Storm.egg-info\SOURCES.txt'
34923writing manifest file 'ChimeraX_Storm.egg-info\SOURCES.txt'
34924Copying ChimeraX_Storm.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Storm-1.0-py3.11.egg-info
34925running install_scripts
34926creating build\bdist.win-amd64\wheel\chimerax_storm-1.0.dist-info\WHEEL
34927creating 'dist\chimerax_storm-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
34928adding 'chimerax/storm/__init__.py'
34929adding 'chimerax/storm/storm.py'
34930adding 'chimerax_storm-1.0.dist-info/METADATA'
34931adding 'chimerax_storm-1.0.dist-info/WHEEL'
34932adding 'chimerax_storm-1.0.dist-info/top_level.txt'
34933adding 'chimerax_storm-1.0.dist-info/RECORD'
34934removing build\bdist.win-amd64\wheel
34935Distribution is in .\dist\ChimeraX_Storm-1.0-py3-none-any.whl
34936INFO:
34937
34938make sync
34939make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
34940cp -av dist/*.whl ../../../build/sync
34941'dist/chimerax_storm-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_storm-1.0-py3-none-any.whl'
34942make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
34943make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/storm'
34944make -C struct_measure build
34945make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
34946if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
34947 echo "missing ChimeraX application's python"; exit 1; \
34948else \
34949 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
34950fi
34951INFO:
34952Executing: devel build . exit true
34953C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
34954!!
34955
34956 ********************************************************************************
34957 Please consider removing the following classifiers in favor of a SPDX license expression:
34958
34959 License :: Free for non-commercial use
34960
34961 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
34962 ********************************************************************************
34963
34964!!
34965 self._finalize_license_expression()
34966running build
34967running build_py
34968creating build\lib\chimerax\struct_measure
34969copying src\mouse_dist.py -> build\lib\chimerax\struct_measure
34970copying src\settings.py -> build\lib\chimerax\struct_measure
34971copying src\tool.py -> build\lib\chimerax\struct_measure
34972copying src\__init__.py -> build\lib\chimerax\struct_measure
34973copying src\distance.png -> build\lib\chimerax\struct_measure
34974running bdist_wheel
34975installing to build\bdist.win-amd64\wheel
34976running install
34977running install_lib
34978creating build\bdist.win-amd64\wheel
34979creating build\bdist.win-amd64\wheel\chimerax
34980creating build\bdist.win-amd64\wheel\chimerax\struct_measure
34981copying build\lib\chimerax\struct_measure\distance.png -> build\bdist.win-amd64\wheel\.\chimerax\struct_measure
34982copying build\lib\chimerax\struct_measure\mouse_dist.py -> build\bdist.win-amd64\wheel\.\chimerax\struct_measure
34983copying build\lib\chimerax\struct_measure\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\struct_measure
34984copying build\lib\chimerax\struct_measure\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\struct_measure
34985copying build\lib\chimerax\struct_measure\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\struct_measure
34986running install_egg_info
34987running egg_info
34988creating ChimeraX_StructMeasure.egg-info
34989writing ChimeraX_StructMeasure.egg-info\PKG-INFO
34990writing dependency_links to ChimeraX_StructMeasure.egg-info\dependency_links.txt
34991writing requirements to ChimeraX_StructMeasure.egg-info\requires.txt
34992writing top-level names to ChimeraX_StructMeasure.egg-info\top_level.txt
34993writing manifest file 'ChimeraX_StructMeasure.egg-info\SOURCES.txt'
34994reading manifest file 'ChimeraX_StructMeasure.egg-info\SOURCES.txt'
34995writing manifest file 'ChimeraX_StructMeasure.egg-info\SOURCES.txt'
34996Copying ChimeraX_StructMeasure.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_StructMeasure-1.2.1-py3.11.egg-info
34997running install_scripts
34998creating build\bdist.win-amd64\wheel\chimerax_structmeasure-1.2.1.dist-info\WHEEL
34999creating 'dist\chimerax_structmeasure-1.2.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
35000adding 'chimerax/struct_measure/__init__.py'
35001adding 'chimerax/struct_measure/distance.png'
35002adding 'chimerax/struct_measure/mouse_dist.py'
35003adding 'chimerax/struct_measure/settings.py'
35004adding 'chimerax/struct_measure/tool.py'
35005adding 'chimerax_structmeasure-1.2.1.dist-info/METADATA'
35006adding 'chimerax_structmeasure-1.2.1.dist-info/WHEEL'
35007adding 'chimerax_structmeasure-1.2.1.dist-info/top_level.txt'
35008adding 'chimerax_structmeasure-1.2.1.dist-info/RECORD'
35009removing build\bdist.win-amd64\wheel
35010Distribution is in .\dist\ChimeraX_StructMeasure-1.2.1-py3-none-any.whl
35011INFO:
35012
35013make sync
35014make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
35015cp -av dist/*.whl ../../../build/sync
35016'dist/chimerax_structmeasure-1.2.1-py3-none-any.whl' -> '../../../build/sync/chimerax_structmeasure-1.2.1-py3-none-any.whl'
35017make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
35018make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struct_measure'
35019make -C struts build
35020make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
35021if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35022 echo "missing ChimeraX application's python"; exit 1; \
35023else \
35024 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35025fi
35026INFO:
35027Executing: devel build . exit true
35028C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35029!!
35030
35031 ********************************************************************************
35032 Please consider removing the following classifiers in favor of a SPDX license expression:
35033
35034 License :: Free for non-commercial use
35035
35036 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35037 ********************************************************************************
35038
35039!!
35040 self._finalize_license_expression()
35041running build
35042running build_py
35043creating build\lib\chimerax\struts
35044copying src\struts.py -> build\lib\chimerax\struts
35045copying src\__init__.py -> build\lib\chimerax\struts
35046running bdist_wheel
35047installing to build\bdist.win-amd64\wheel
35048running install
35049running install_lib
35050creating build\bdist.win-amd64\wheel
35051creating build\bdist.win-amd64\wheel\chimerax
35052creating build\bdist.win-amd64\wheel\chimerax\struts
35053copying build\lib\chimerax\struts\struts.py -> build\bdist.win-amd64\wheel\.\chimerax\struts
35054copying build\lib\chimerax\struts\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\struts
35055running install_egg_info
35056running egg_info
35057creating ChimeraX_Struts.egg-info
35058writing ChimeraX_Struts.egg-info\PKG-INFO
35059writing dependency_links to ChimeraX_Struts.egg-info\dependency_links.txt
35060writing requirements to ChimeraX_Struts.egg-info\requires.txt
35061writing top-level names to ChimeraX_Struts.egg-info\top_level.txt
35062writing manifest file 'ChimeraX_Struts.egg-info\SOURCES.txt'
35063reading manifest file 'ChimeraX_Struts.egg-info\SOURCES.txt'
35064writing manifest file 'ChimeraX_Struts.egg-info\SOURCES.txt'
35065Copying ChimeraX_Struts.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Struts-1.0.1-py3.11.egg-info
35066running install_scripts
35067creating build\bdist.win-amd64\wheel\chimerax_struts-1.0.1.dist-info\WHEEL
35068creating 'dist\chimerax_struts-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
35069adding 'chimerax/struts/__init__.py'
35070adding 'chimerax/struts/struts.py'
35071adding 'chimerax_struts-1.0.1.dist-info/METADATA'
35072adding 'chimerax_struts-1.0.1.dist-info/WHEEL'
35073adding 'chimerax_struts-1.0.1.dist-info/top_level.txt'
35074adding 'chimerax_struts-1.0.1.dist-info/RECORD'
35075removing build\bdist.win-amd64\wheel
35076Distribution is in .\dist\ChimeraX_Struts-1.0.1-py3-none-any.whl
35077INFO:
35078
35079make sync
35080make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
35081cp -av dist/*.whl ../../../build/sync
35082'dist/chimerax_struts-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_struts-1.0.1-py3-none-any.whl'
35083make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
35084make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/struts'
35085make -C surface build
35086make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
35087if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35088 echo "missing ChimeraX application's python"; exit 1; \
35089else \
35090 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35091fi
35092INFO:
35093Executing: devel build . exit true
35094C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35095!!
35096
35097 ********************************************************************************
35098 Please consider removing the following classifiers in favor of a SPDX license expression:
35099
35100 License :: Free for non-commercial use
35101
35102 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35103 ********************************************************************************
35104
35105!!
35106 self._finalize_license_expression()
35107running build
35108running build_py
35109creating build\lib.win-amd64-cpython-311\chimerax\surface
35110copying src\area.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35111copying src\areagui.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35112copying src\bondzone.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35113copying src\cap.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35114copying src\check.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35115copying src\collada.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35116copying src\colorcmds.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35117copying src\colorgeom.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35118copying src\colorvol.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35119copying src\colorzone.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35120copying src\colorzonegui.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35121copying src\combine.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35122copying src\dust.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35123copying src\dustgui.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35124copying src\gaussian.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35125copying src\geodesic.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35126copying src\gridsurf.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35127copying src\hidefarblobs.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35128copying src\icosahedron.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35129copying src\measure_contactarea.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35130copying src\measure_sasacmd.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35131copying src\sasa.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35132copying src\settings.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35133copying src\shapes.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35134copying src\sop.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35135copying src\split.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35136copying src\splitbycolor.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35137copying src\squaremesh.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35138copying src\surfacecmds.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35139copying src\surfcolorgui.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35140copying src\texture.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35141copying src\topology.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35142copying src\tube.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35143copying src\updaters.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35144copying src\zone.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35145copying src\zonegui.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35146copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\surface
35147running build_ext
35148building 'chimerax.surface._surface' extension
35149creating build\temp.win-amd64-cpython-311\Release\_surface
35150"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/border.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\border.obj
35151border.cpp
35152"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/capper.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\capper.obj
35153capper.cpp
35154"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/connected.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\connected.obj
35155connected.cpp
35156_surface/connected.cpp(105): warning C4244: 'argument': conversion from 'int64_t' to '_Ty', possible loss of data
35157 with
35158 [
35159 _Ty=int
35160 ]
35161_surface/connected.cpp(163): warning C4244: 'argument': conversion from 'int64_t' to '_Ty', possible loss of data
35162 with
35163 [
35164 _Ty=int
35165 ]
35166"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/convexity.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\convexity.obj
35167convexity.cpp
35168_surface/convexity.cpp(76): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35169_surface/convexity.cpp(199): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35170_surface/convexity.cpp(225): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35171_surface/convexity.cpp(283): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
35172"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/measure.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\measure.obj
35173measure.cpp
35174_surface/measure.cpp(91): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35175_surface/measure.cpp(119): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35176_surface/measure.cpp(130): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35177_surface/measure.cpp(196): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35178_surface/measure.cpp(224): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35179_surface/measure.cpp(305): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35180_surface/measure.cpp(340): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35181_surface/measure.cpp(350): warning C4244: '+=': conversion from 'double' to 'float', possible loss of data
35182_surface/measure.cpp(351): warning C4244: '+=': conversion from 'double' to 'float', possible loss of data
35183_surface/measure.cpp(352): warning C4244: '+=': conversion from 'double' to 'float', possible loss of data
35184_surface/measure.cpp(372): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35185"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/normals.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\normals.obj
35186normals.cpp
35187_surface/normals.cpp(39): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35188_surface/normals.cpp(49): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35189_surface/normals.cpp(63): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35190_surface/normals.cpp(76): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35191_surface/normals.cpp(93): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35192_surface/normals.cpp(93): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35193_surface/normals.cpp(93): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35194_surface/normals.cpp(102): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35195_surface/normals.cpp(103): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35196_surface/normals.cpp(103): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35197"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/patches.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\patches.obj
35198patches.cpp
35199_surface/patches.cpp(154): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
35200_surface/patches.cpp(155): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
35201_surface/patches.cpp(156): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
35202_surface/patches.cpp(157): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
35203_surface/patches.cpp(168): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
35204 with
35205 [
35206 _Ty=int
35207 ]
35208_surface/patches.cpp(184): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
35209_surface/patches.cpp(202): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35210_surface/patches.cpp(213): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35211_surface/patches.cpp(213): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35212_surface/patches.cpp(213): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35213_surface/patches.cpp(215): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35214_surface/patches.cpp(215): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35215_surface/patches.cpp(215): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35216_surface/patches.cpp(217): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35217_surface/patches.cpp(217): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35218_surface/patches.cpp(217): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35219_surface/patches.cpp(301): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35220_surface/patches.cpp(324): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35221_surface/patches.cpp(342): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35222_surface/patches.cpp(526): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35223_surface/patches.cpp(526): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35224_surface/patches.cpp(526): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35225_surface/patches.cpp(541): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35226_surface/patches.cpp(562): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35227_surface/patches.cpp(637): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
35228_surface/patches.cpp(644): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35229_surface/patches.cpp(665): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35230_surface/patches.cpp(676): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35231_surface/patches.cpp(676): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35232_surface/patches.cpp(698): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35233_surface/patches.cpp(708): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35234_surface/patches.cpp(777): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35235_surface/patches.cpp(777): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35236_surface/patches.cpp(823): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35237"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/refinemesh.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\refinemesh.obj
35238refinemesh.cpp
35239_surface/refinemesh.cpp(296): warning C4244: 'initializing': conversion from 'double' to 'Cap_Calculation::Real', possible loss of data
35240_surface/refinemesh.cpp(316): warning C4305: 'initializing': truncation from 'double' to 'Cap_Calculation::Real'
35241_surface/refinemesh.cpp(358): warning C4244: 'initializing': conversion from 'double' to 'Cap_Calculation::Real', possible loss of data
35242_surface/refinemesh.cpp(365): warning C4267: 'initializing': conversion from 'size_t' to 'Cap_Calculation::Index', possible loss of data
35243_surface/refinemesh.cpp(575): warning C4267: 'initializing': conversion from 'size_t' to 'Cap_Calculation::Triangle_Side', possible loss of data
35244_surface/refinemesh.cpp(953): warning C4244: 'initializing': conversion from 'double' to 'Cap_Calculation::Real', possible loss of data
35245_surface/refinemesh.cpp(1008): warning C4244: '=': conversion from 'double' to 'Cap_Calculation::Real', possible loss of data
35246_surface/refinemesh.cpp(1075): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35247_surface/refinemesh.cpp(1079): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35248"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/sasa.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\sasa.obj
35249sasa.cpp
35250_surface/sasa.cpp(208): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35251_surface/sasa.cpp(219): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35252_surface/sasa.cpp(276): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35253_surface/sasa.cpp(308): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35254_surface/sasa.cpp(324): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35255_surface/sasa.cpp(359): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35256_surface/sasa.cpp(484): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35257_surface/sasa.cpp(512): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35258_surface/sasa.cpp(550): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35259_surface/sasa.cpp(565): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35260_surface/sasa.cpp(584): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35261_surface/sasa.cpp(617): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35262_surface/sasa.cpp(634): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35263_surface/sasa.cpp(638): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35264_surface/sasa.cpp(701): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35265_surface/sasa.cpp(718): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35266_surface/sasa.cpp(751): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35267_surface/sasa.cpp(816): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35268_surface/sasa.cpp(826): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35269_surface/sasa.cpp(873): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35270_surface/sasa.cpp(872): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35271"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/smooth.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\smooth.obj
35272smooth.cpp
35273_surface/smooth.cpp(43): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35274_surface/smooth.cpp(51): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35275_surface/smooth.cpp(51): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35276"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/subdivide.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\subdivide.obj
35277subdivide.cpp
35278_surface/subdivide.cpp(142): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35279_surface/subdivide.cpp(148): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35280_surface/subdivide.cpp(178): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35281_surface/subdivide.cpp(178): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35282_surface/subdivide.cpp(179): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35283_surface/subdivide.cpp(199): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35284_surface/subdivide.cpp(204): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35285_surface/subdivide.cpp(218): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35286_surface/subdivide.cpp(228): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35287_surface/subdivide.cpp(256): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35288_surface/subdivide.cpp(292): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35289_surface/subdivide.cpp(293): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35290_surface/subdivide.cpp(293): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35291_surface/subdivide.cpp(300): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
35292_surface/subdivide.cpp(313): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35293_surface/subdivide.cpp(314): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35294_surface/subdivide.cpp(314): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35295_surface/subdivide.cpp(333): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35296_surface/subdivide.cpp(333): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35297_surface/subdivide.cpp(333): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35298_surface/subdivide.cpp(383): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35299_surface/subdivide.cpp(396): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
35300_surface/subdivide.cpp(404): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35301_surface/subdivide.cpp(404): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35302_surface/subdivide.cpp(427): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35303_surface/subdivide.cpp(427): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35304"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/surface.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\surface.obj
35305surface.cpp
35306"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/surfdist.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\surfdist.obj
35307surfdist.cpp
35308_surface/surfdist.cpp(63): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35309_surface/surfdist.cpp(101): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35310_surface/surfdist.cpp(101): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35311_surface/surfdist.cpp(101): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35312_surface/surfdist.cpp(103): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35313_surface/surfdist.cpp(103): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35314_surface/surfdist.cpp(105): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35315_surface/surfdist.cpp(105): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35316_surface/surfdist.cpp(105): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35317_surface/surfdist.cpp(142): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
35318_surface/surfdist.cpp(144): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35319_surface/surfdist.cpp(218): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
35320"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/triangulate.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\triangulate.obj
35321triangulate.cpp
35322_surface/triangulate.cpp(51): warning C4068: unknown pragma 'clang'
35323_surface/triangulate.cpp(131): warning C4312: 'reinterpret_cast': conversion from 'int' to 'void *' of greater size
35324_surface/triangulate.cpp(156): warning C4311: 'reinterpret_cast': pointer truncation from 'void *' to 'long'
35325_surface/triangulate.cpp(156): warning C4302: 'reinterpret_cast': truncation from 'void *' to 'long'
35326_surface/triangulate.cpp(176): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
35327_surface/triangulate.cpp(177): warning C4312: 'reinterpret_cast': conversion from 'int' to 'void *' of greater size
35328_surface/triangulate.cpp(189): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35329_surface/triangulate.cpp(189): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35330_surface/triangulate.cpp(189): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35331_surface/triangulate.cpp(221): warning C4244: 'argument': conversion from 'int64_t' to 'int', possible loss of data
35332_surface/triangulate.cpp(225): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35333_surface/triangulate.cpp(225): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35334_surface/triangulate.cpp(225): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35335"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_surface/tube.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_surface\tube.obj
35336tube.cpp
35337_surface/tube.cpp(90): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35338_surface/tube.cpp(100): warning C4244: 'initializing': conversion from 'double' to 'float', possible loss of data
35339_surface/tube.cpp(201): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35340_surface/tube.cpp(210): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35341_surface/tube.cpp(297): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35342_surface/tube.cpp(372): warning C4244: 'initializing': conversion from 'int64_t' to 'int', possible loss of data
35343"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib glu32.lib opengl32.lib /EXPORT:PyInit__surface build\temp.win-amd64-cpython-311\Release\_surface\border.obj build\temp.win-amd64-cpython-311\Release\_surface\capper.obj build\temp.win-amd64-cpython-311\Release\_surface\connected.obj build\temp.win-amd64-cpython-311\Release\_surface\convexity.obj build\temp.win-amd64-cpython-311\Release\_surface\measure.obj build\temp.win-amd64-cpython-311\Release\_surface\normals.obj build\temp.win-amd64-cpython-311\Release\_surface\patches.obj build\temp.win-amd64-cpython-311\Release\_surface\refinemesh.obj build\temp.win-amd64-cpython-311\Release\_surface\sasa.obj build\temp.win-amd64-cpython-311\Release\_surface\smooth.obj build\temp.win-amd64-cpython-311\Release\_surface\subdivide.obj build\temp.win-amd64-cpython-311\Release\_surface\surface.obj build\temp.win-amd64-cpython-311\Release\_surface\surfdist.obj build\temp.win-amd64-cpython-311\Release\_surface\triangulate.obj build\temp.win-amd64-cpython-311\Release\_surface\tube.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\surface\_surface.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_surface\_surface.cp311-win_amd64.lib
35344 Creating library build\temp.win-amd64-cpython-311\Release\_surface\_surface.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_surface\_surface.cp311-win_amd64.exp
35345Generating code
35346Finished generating code
35347running bdist_wheel
35348installing to build\bdist.win-amd64\wheel
35349running install
35350running install_lib
35351running build_ext
35352creating build\bdist.win-amd64\wheel
35353creating build\bdist.win-amd64\wheel\chimerax
35354creating build\bdist.win-amd64\wheel\chimerax\surface
35355copying build\lib.win-amd64-cpython-311\chimerax\surface\area.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35356copying build\lib.win-amd64-cpython-311\chimerax\surface\areagui.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35357copying build\lib.win-amd64-cpython-311\chimerax\surface\bondzone.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35358copying build\lib.win-amd64-cpython-311\chimerax\surface\cap.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35359copying build\lib.win-amd64-cpython-311\chimerax\surface\check.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35360copying build\lib.win-amd64-cpython-311\chimerax\surface\collada.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35361copying build\lib.win-amd64-cpython-311\chimerax\surface\colorcmds.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35362copying build\lib.win-amd64-cpython-311\chimerax\surface\colorgeom.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35363copying build\lib.win-amd64-cpython-311\chimerax\surface\colorvol.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35364copying build\lib.win-amd64-cpython-311\chimerax\surface\colorzone.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35365copying build\lib.win-amd64-cpython-311\chimerax\surface\colorzonegui.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35366copying build\lib.win-amd64-cpython-311\chimerax\surface\combine.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35367copying build\lib.win-amd64-cpython-311\chimerax\surface\dust.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35368copying build\lib.win-amd64-cpython-311\chimerax\surface\dustgui.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35369copying build\lib.win-amd64-cpython-311\chimerax\surface\gaussian.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35370copying build\lib.win-amd64-cpython-311\chimerax\surface\geodesic.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35371copying build\lib.win-amd64-cpython-311\chimerax\surface\gridsurf.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35372copying build\lib.win-amd64-cpython-311\chimerax\surface\hidefarblobs.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35373copying build\lib.win-amd64-cpython-311\chimerax\surface\icosahedron.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35374copying build\lib.win-amd64-cpython-311\chimerax\surface\measure_contactarea.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35375copying build\lib.win-amd64-cpython-311\chimerax\surface\measure_sasacmd.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35376copying build\lib.win-amd64-cpython-311\chimerax\surface\sasa.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35377copying build\lib.win-amd64-cpython-311\chimerax\surface\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35378copying build\lib.win-amd64-cpython-311\chimerax\surface\shapes.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35379copying build\lib.win-amd64-cpython-311\chimerax\surface\sop.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35380copying build\lib.win-amd64-cpython-311\chimerax\surface\split.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35381copying build\lib.win-amd64-cpython-311\chimerax\surface\splitbycolor.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35382copying build\lib.win-amd64-cpython-311\chimerax\surface\squaremesh.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35383copying build\lib.win-amd64-cpython-311\chimerax\surface\surfacecmds.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35384copying build\lib.win-amd64-cpython-311\chimerax\surface\surfcolorgui.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35385copying build\lib.win-amd64-cpython-311\chimerax\surface\texture.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35386copying build\lib.win-amd64-cpython-311\chimerax\surface\topology.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35387copying build\lib.win-amd64-cpython-311\chimerax\surface\tube.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35388copying build\lib.win-amd64-cpython-311\chimerax\surface\updaters.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35389copying build\lib.win-amd64-cpython-311\chimerax\surface\zone.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35390copying build\lib.win-amd64-cpython-311\chimerax\surface\zonegui.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35391copying build\lib.win-amd64-cpython-311\chimerax\surface\_surface.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\surface
35392copying build\lib.win-amd64-cpython-311\chimerax\surface\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\surface
35393running install_egg_info
35394running egg_info
35395creating ChimeraX_Surface.egg-info
35396writing ChimeraX_Surface.egg-info\PKG-INFO
35397writing dependency_links to ChimeraX_Surface.egg-info\dependency_links.txt
35398writing requirements to ChimeraX_Surface.egg-info\requires.txt
35399writing top-level names to ChimeraX_Surface.egg-info\top_level.txt
35400writing manifest file 'ChimeraX_Surface.egg-info\SOURCES.txt'
35401reading manifest file 'ChimeraX_Surface.egg-info\SOURCES.txt'
35402writing manifest file 'ChimeraX_Surface.egg-info\SOURCES.txt'
35403Copying ChimeraX_Surface.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Surface-1.0.1-py3.11.egg-info
35404running install_scripts
35405C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
35406 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
35407creating build\bdist.win-amd64\wheel\chimerax_surface-1.0.1.dist-info\WHEEL
35408creating 'dist\chimerax_surface-1.0.1-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
35409adding 'chimerax/surface/__init__.py'
35410adding 'chimerax/surface/_surface.cp311-win_amd64.pyd'
35411adding 'chimerax/surface/area.py'
35412adding 'chimerax/surface/areagui.py'
35413adding 'chimerax/surface/bondzone.py'
35414adding 'chimerax/surface/cap.py'
35415adding 'chimerax/surface/check.py'
35416adding 'chimerax/surface/collada.py'
35417adding 'chimerax/surface/colorcmds.py'
35418adding 'chimerax/surface/colorgeom.py'
35419adding 'chimerax/surface/colorvol.py'
35420adding 'chimerax/surface/colorzone.py'
35421adding 'chimerax/surface/colorzonegui.py'
35422adding 'chimerax/surface/combine.py'
35423adding 'chimerax/surface/dust.py'
35424adding 'chimerax/surface/dustgui.py'
35425adding 'chimerax/surface/gaussian.py'
35426adding 'chimerax/surface/geodesic.py'
35427adding 'chimerax/surface/gridsurf.py'
35428adding 'chimerax/surface/hidefarblobs.py'
35429adding 'chimerax/surface/icosahedron.py'
35430adding 'chimerax/surface/measure_contactarea.py'
35431adding 'chimerax/surface/measure_sasacmd.py'
35432adding 'chimerax/surface/sasa.py'
35433adding 'chimerax/surface/settings.py'
35434adding 'chimerax/surface/shapes.py'
35435adding 'chimerax/surface/sop.py'
35436adding 'chimerax/surface/split.py'
35437adding 'chimerax/surface/splitbycolor.py'
35438adding 'chimerax/surface/squaremesh.py'
35439adding 'chimerax/surface/surfacecmds.py'
35440adding 'chimerax/surface/surfcolorgui.py'
35441adding 'chimerax/surface/texture.py'
35442adding 'chimerax/surface/topology.py'
35443adding 'chimerax/surface/tube.py'
35444adding 'chimerax/surface/updaters.py'
35445adding 'chimerax/surface/zone.py'
35446adding 'chimerax/surface/zonegui.py'
35447adding 'chimerax_surface-1.0.1.dist-info/METADATA'
35448adding 'chimerax_surface-1.0.1.dist-info/WHEEL'
35449adding 'chimerax_surface-1.0.1.dist-info/top_level.txt'
35450adding 'chimerax_surface-1.0.1.dist-info/RECORD'
35451removing build\bdist.win-amd64\wheel
35452Distribution is in .\dist\ChimeraX_Surface-1.0.1-cp311-cp311-win_amd64.whl
35453INFO:
35454
35455make sync
35456make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
35457cp -av dist/*.whl ../../../build/sync
35458'dist/chimerax_surface-1.0.1-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_surface-1.0.1-cp311-cp311-win_amd64.whl'
35459make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
35460make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/surface'
35461make -C swapaa build
35462make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
35463if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35464 echo "missing ChimeraX application's python"; exit 1; \
35465else \
35466 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35467fi
35468INFO:
35469Executing: devel build . exit true
35470C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35471!!
35472
35473 ********************************************************************************
35474 Please consider removing the following classifiers in favor of a SPDX license expression:
35475
35476 License :: Free for non-commercial use
35477
35478 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35479 ********************************************************************************
35480
35481!!
35482 self._finalize_license_expression()
35483running build
35484running build_py
35485creating build\lib\chimerax\swapaa
35486copying src\mouse_swapaa.py -> build\lib\chimerax\swapaa
35487copying src\swapaa.py -> build\lib\chimerax\swapaa
35488copying src\templates.py -> build\lib\chimerax\swapaa
35489copying src\__init__.py -> build\lib\chimerax\swapaa
35490copying src\templates.cif -> build\lib\chimerax\swapaa
35491copying src\swapaa.png -> build\lib\chimerax\swapaa
35492running bdist_wheel
35493installing to build\bdist.win-amd64\wheel
35494running install
35495running install_lib
35496creating build\bdist.win-amd64\wheel
35497creating build\bdist.win-amd64\wheel\chimerax
35498creating build\bdist.win-amd64\wheel\chimerax\swapaa
35499copying build\lib\chimerax\swapaa\mouse_swapaa.py -> build\bdist.win-amd64\wheel\.\chimerax\swapaa
35500copying build\lib\chimerax\swapaa\swapaa.png -> build\bdist.win-amd64\wheel\.\chimerax\swapaa
35501copying build\lib\chimerax\swapaa\swapaa.py -> build\bdist.win-amd64\wheel\.\chimerax\swapaa
35502copying build\lib\chimerax\swapaa\templates.cif -> build\bdist.win-amd64\wheel\.\chimerax\swapaa
35503copying build\lib\chimerax\swapaa\templates.py -> build\bdist.win-amd64\wheel\.\chimerax\swapaa
35504copying build\lib\chimerax\swapaa\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\swapaa
35505running install_egg_info
35506running egg_info
35507creating ChimeraX_SwapAA.egg-info
35508writing ChimeraX_SwapAA.egg-info\PKG-INFO
35509writing dependency_links to ChimeraX_SwapAA.egg-info\dependency_links.txt
35510writing requirements to ChimeraX_SwapAA.egg-info\requires.txt
35511writing top-level names to ChimeraX_SwapAA.egg-info\top_level.txt
35512writing manifest file 'ChimeraX_SwapAA.egg-info\SOURCES.txt'
35513reading manifest file 'ChimeraX_SwapAA.egg-info\SOURCES.txt'
35514writing manifest file 'ChimeraX_SwapAA.egg-info\SOURCES.txt'
35515Copying ChimeraX_SwapAA.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SwapAA-2.0.1-py3.11.egg-info
35516running install_scripts
35517creating build\bdist.win-amd64\wheel\chimerax_swapaa-2.0.1.dist-info\WHEEL
35518creating 'dist\chimerax_swapaa-2.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
35519adding 'chimerax/swapaa/__init__.py'
35520adding 'chimerax/swapaa/mouse_swapaa.py'
35521adding 'chimerax/swapaa/swapaa.png'
35522adding 'chimerax/swapaa/swapaa.py'
35523adding 'chimerax/swapaa/templates.cif'
35524adding 'chimerax/swapaa/templates.py'
35525adding 'chimerax_swapaa-2.0.1.dist-info/METADATA'
35526adding 'chimerax_swapaa-2.0.1.dist-info/WHEEL'
35527adding 'chimerax_swapaa-2.0.1.dist-info/top_level.txt'
35528adding 'chimerax_swapaa-2.0.1.dist-info/RECORD'
35529removing build\bdist.win-amd64\wheel
35530Distribution is in .\dist\ChimeraX_SwapAA-2.0.1-py3-none-any.whl
35531INFO:
35532
35533make sync
35534make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
35535cp -av dist/*.whl ../../../build/sync
35536'dist/chimerax_swapaa-2.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_swapaa-2.0.1-py3-none-any.whl'
35537make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
35538make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swapaa'
35539make -C swap_res build
35540make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
35541if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35542 echo "missing ChimeraX application's python"; exit 1; \
35543else \
35544 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35545fi
35546INFO:
35547Executing: devel build . exit true
35548C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35549!!
35550
35551 ********************************************************************************
35552 Please consider removing the following classifiers in favor of a SPDX license expression:
35553
35554 License :: Free for non-commercial use
35555
35556 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35557 ********************************************************************************
35558
35559!!
35560 self._finalize_license_expression()
35561running build
35562running build_py
35563creating build\lib\chimerax\swap_res
35564copying src\cmd.py -> build\lib\chimerax\swap_res
35565copying src\contextmenu.py -> build\lib\chimerax\swap_res
35566copying src\settings.py -> build\lib\chimerax\swap_res
35567copying src\swap_res.py -> build\lib\chimerax\swap_res
35568copying src\tool.py -> build\lib\chimerax\swap_res
35569copying src\__init__.py -> build\lib\chimerax\swap_res
35570running bdist_wheel
35571installing to build\bdist.win-amd64\wheel
35572running install
35573running install_lib
35574creating build\bdist.win-amd64\wheel
35575creating build\bdist.win-amd64\wheel\chimerax
35576creating build\bdist.win-amd64\wheel\chimerax\swap_res
35577copying build\lib\chimerax\swap_res\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\swap_res
35578copying build\lib\chimerax\swap_res\contextmenu.py -> build\bdist.win-amd64\wheel\.\chimerax\swap_res
35579copying build\lib\chimerax\swap_res\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\swap_res
35580copying build\lib\chimerax\swap_res\swap_res.py -> build\bdist.win-amd64\wheel\.\chimerax\swap_res
35581copying build\lib\chimerax\swap_res\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\swap_res
35582copying build\lib\chimerax\swap_res\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\swap_res
35583running install_egg_info
35584running egg_info
35585creating ChimeraX_SwapRes.egg-info
35586writing ChimeraX_SwapRes.egg-info\PKG-INFO
35587writing dependency_links to ChimeraX_SwapRes.egg-info\dependency_links.txt
35588writing requirements to ChimeraX_SwapRes.egg-info\requires.txt
35589writing top-level names to ChimeraX_SwapRes.egg-info\top_level.txt
35590writing manifest file 'ChimeraX_SwapRes.egg-info\SOURCES.txt'
35591reading manifest file 'ChimeraX_SwapRes.egg-info\SOURCES.txt'
35592writing manifest file 'ChimeraX_SwapRes.egg-info\SOURCES.txt'
35593Copying ChimeraX_SwapRes.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_SwapRes-2.5.2-py3.11.egg-info
35594running install_scripts
35595creating build\bdist.win-amd64\wheel\chimerax_swapres-2.5.2.dist-info\WHEEL
35596creating 'dist\chimerax_swapres-2.5.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
35597adding 'chimerax/swap_res/__init__.py'
35598adding 'chimerax/swap_res/cmd.py'
35599adding 'chimerax/swap_res/contextmenu.py'
35600adding 'chimerax/swap_res/settings.py'
35601adding 'chimerax/swap_res/swap_res.py'
35602adding 'chimerax/swap_res/tool.py'
35603adding 'chimerax_swapres-2.5.2.dist-info/METADATA'
35604adding 'chimerax_swapres-2.5.2.dist-info/WHEEL'
35605adding 'chimerax_swapres-2.5.2.dist-info/top_level.txt'
35606adding 'chimerax_swapres-2.5.2.dist-info/RECORD'
35607removing build\bdist.win-amd64\wheel
35608Distribution is in .\dist\ChimeraX_SwapRes-2.5.2-py3-none-any.whl
35609INFO:
35610
35611make sync
35612make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
35613cp -av dist/*.whl ../../../build/sync
35614'dist/chimerax_swapres-2.5.2-py3-none-any.whl' -> '../../../build/sync/chimerax_swapres-2.5.2-py3-none-any.whl'
35615make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
35616make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/swap_res'
35617make -C tape_measure build
35618make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
35619if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35620 echo "missing ChimeraX application's python"; exit 1; \
35621else \
35622 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35623fi
35624INFO:
35625Executing: devel build . exit true
35626C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35627!!
35628
35629 ********************************************************************************
35630 Please consider removing the following classifiers in favor of a SPDX license expression:
35631
35632 License :: Free for non-commercial use
35633
35634 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35635 ********************************************************************************
35636
35637!!
35638 self._finalize_license_expression()
35639running build
35640running build_py
35641creating build\lib\chimerax\tape_measure
35642copying src\tape.py -> build\lib\chimerax\tape_measure
35643copying src\__init__.py -> build\lib\chimerax\tape_measure
35644copying src\tape.png -> build\lib\chimerax\tape_measure
35645running bdist_wheel
35646installing to build\bdist.win-amd64\wheel
35647running install
35648running install_lib
35649creating build\bdist.win-amd64\wheel
35650creating build\bdist.win-amd64\wheel\chimerax
35651creating build\bdist.win-amd64\wheel\chimerax\tape_measure
35652copying build\lib\chimerax\tape_measure\tape.png -> build\bdist.win-amd64\wheel\.\chimerax\tape_measure
35653copying build\lib\chimerax\tape_measure\tape.py -> build\bdist.win-amd64\wheel\.\chimerax\tape_measure
35654copying build\lib\chimerax\tape_measure\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\tape_measure
35655running install_egg_info
35656running egg_info
35657creating ChimeraX_TapeMeasure.egg-info
35658writing ChimeraX_TapeMeasure.egg-info\PKG-INFO
35659writing dependency_links to ChimeraX_TapeMeasure.egg-info\dependency_links.txt
35660writing requirements to ChimeraX_TapeMeasure.egg-info\requires.txt
35661writing top-level names to ChimeraX_TapeMeasure.egg-info\top_level.txt
35662writing manifest file 'ChimeraX_TapeMeasure.egg-info\SOURCES.txt'
35663reading manifest file 'ChimeraX_TapeMeasure.egg-info\SOURCES.txt'
35664writing manifest file 'ChimeraX_TapeMeasure.egg-info\SOURCES.txt'
35665Copying ChimeraX_TapeMeasure.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_TapeMeasure-1.0-py3.11.egg-info
35666running install_scripts
35667creating build\bdist.win-amd64\wheel\chimerax_tapemeasure-1.0.dist-info\WHEEL
35668creating 'dist\chimerax_tapemeasure-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
35669adding 'chimerax/tape_measure/__init__.py'
35670adding 'chimerax/tape_measure/tape.png'
35671adding 'chimerax/tape_measure/tape.py'
35672adding 'chimerax_tapemeasure-1.0.dist-info/METADATA'
35673adding 'chimerax_tapemeasure-1.0.dist-info/WHEEL'
35674adding 'chimerax_tapemeasure-1.0.dist-info/top_level.txt'
35675adding 'chimerax_tapemeasure-1.0.dist-info/RECORD'
35676removing build\bdist.win-amd64\wheel
35677Distribution is in .\dist\ChimeraX_TapeMeasure-1.0-py3-none-any.whl
35678INFO:
35679
35680make sync
35681make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
35682cp -av dist/*.whl ../../../build/sync
35683'dist/chimerax_tapemeasure-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_tapemeasure-1.0-py3-none-any.whl'
35684make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
35685make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tape_measure'
35686make -C task_manager build
35687make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
35688if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35689 echo "missing ChimeraX application's python"; exit 1; \
35690else \
35691 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35692fi
35693INFO:
35694Executing: devel build . exit true
35695C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\config\_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
35696!!
35697
35698 ********************************************************************************
35699 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
35700
35701 By 2026-Feb-18, you need to update your project and remove deprecated calls
35702 or your builds will no longer be supported.
35703
35704 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35705 ********************************************************************************
35706
35707!!
35708 corresp(dist, value, root_dir)
35709running build
35710running build_py
35711creating build\lib\chimerax\taskmanager
35712copying src\cmd.py -> build\lib\chimerax\taskmanager
35713copying src\tool.py -> build\lib\chimerax\taskmanager
35714copying src\__init__.py -> build\lib\chimerax\taskmanager
35715running bdist_wheel
35716installing to build\bdist.win-amd64\wheel
35717running install
35718running install_lib
35719creating build\bdist.win-amd64\wheel
35720creating build\bdist.win-amd64\wheel\chimerax
35721creating build\bdist.win-amd64\wheel\chimerax\taskmanager
35722copying build\lib\chimerax\taskmanager\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\taskmanager
35723copying build\lib\chimerax\taskmanager\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\taskmanager
35724copying build\lib\chimerax\taskmanager\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\taskmanager
35725running install_egg_info
35726running egg_info
35727creating ChimeraX_TaskManager.egg-info
35728writing ChimeraX_TaskManager.egg-info\PKG-INFO
35729writing dependency_links to ChimeraX_TaskManager.egg-info\dependency_links.txt
35730writing requirements to ChimeraX_TaskManager.egg-info\requires.txt
35731writing top-level names to ChimeraX_TaskManager.egg-info\top_level.txt
35732writing manifest file 'ChimeraX_TaskManager.egg-info\SOURCES.txt'
35733reading manifest file 'ChimeraX_TaskManager.egg-info\SOURCES.txt'
35734writing manifest file 'ChimeraX_TaskManager.egg-info\SOURCES.txt'
35735Copying ChimeraX_TaskManager.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_TaskManager-1.0-py3.11.egg-info
35736running install_scripts
35737creating build\bdist.win-amd64\wheel\chimerax_taskmanager-1.0.dist-info\WHEEL
35738creating 'dist\chimerax_taskmanager-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
35739adding 'chimerax/taskmanager/__init__.py'
35740adding 'chimerax/taskmanager/cmd.py'
35741adding 'chimerax/taskmanager/tool.py'
35742adding 'chimerax_taskmanager-1.0.dist-info/METADATA'
35743adding 'chimerax_taskmanager-1.0.dist-info/WHEEL'
35744adding 'chimerax_taskmanager-1.0.dist-info/top_level.txt'
35745adding 'chimerax_taskmanager-1.0.dist-info/RECORD'
35746removing build\bdist.win-amd64\wheel
35747Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\task_manager\dist\chimerax_taskmanager-1.0-py3-none-any.whl
35748INFO:
35749
35750make sync
35751make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
35752cp -av dist/*.whl ../../../build/sync
35753'dist/chimerax_taskmanager-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_taskmanager-1.0-py3-none-any.whl'
35754make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
35755make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/task_manager'
35756make -C test build
35757make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/test'
35758if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35759 echo "missing ChimeraX application's python"; exit 1; \
35760else \
35761 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35762fi
35763INFO:
35764Executing: devel build . exit true
35765exectest.cpp
35766Generating code
35767Finished generating code
35768C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35769!!
35770
35771 ********************************************************************************
35772 Please consider removing the following classifiers in favor of a SPDX license expression:
35773
35774 License :: Free for non-commercial use
35775
35776 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35777 ********************************************************************************
35778
35779!!
35780 self._finalize_license_expression()
35781running build
35782running build_py
35783creating build\lib.win-amd64-cpython-311\chimerax\test
35784copying src\test.py -> build\lib.win-amd64-cpython-311\chimerax\test
35785copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\test
35786creating build\lib.win-amd64-cpython-311\chimerax\test\bin
35787copying src\bin\exectest.exe -> build\lib.win-amd64-cpython-311\chimerax\test\bin
35788running build_ext
35789running bdist_wheel
35790installing to build\bdist.win-amd64\wheel
35791running install
35792running install_lib
35793running build_ext
35794creating build\bdist.win-amd64\wheel
35795creating build\bdist.win-amd64\wheel\chimerax
35796creating build\bdist.win-amd64\wheel\chimerax\test
35797creating build\bdist.win-amd64\wheel\chimerax\test\bin
35798copying build\lib.win-amd64-cpython-311\chimerax\test\bin\exectest.exe -> build\bdist.win-amd64\wheel\.\chimerax\test\bin
35799copying build\lib.win-amd64-cpython-311\chimerax\test\test.py -> build\bdist.win-amd64\wheel\.\chimerax\test
35800copying build\lib.win-amd64-cpython-311\chimerax\test\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\test
35801running install_egg_info
35802running egg_info
35803creating ChimeraX_Test.egg-info
35804writing ChimeraX_Test.egg-info\PKG-INFO
35805writing dependency_links to ChimeraX_Test.egg-info\dependency_links.txt
35806writing requirements to ChimeraX_Test.egg-info\requires.txt
35807writing top-level names to ChimeraX_Test.egg-info\top_level.txt
35808writing manifest file 'ChimeraX_Test.egg-info\SOURCES.txt'
35809reading manifest file 'ChimeraX_Test.egg-info\SOURCES.txt'
35810writing manifest file 'ChimeraX_Test.egg-info\SOURCES.txt'
35811Copying ChimeraX_Test.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Test-1.0-py3.11.egg-info
35812running install_scripts
35813C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
35814 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
35815creating build\bdist.win-amd64\wheel\chimerax_test-1.0.dist-info\WHEEL
35816creating 'dist\chimerax_test-1.0-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
35817adding 'chimerax/test/__init__.py'
35818adding 'chimerax/test/test.py'
35819adding 'chimerax/test/bin/exectest.exe'
35820adding 'chimerax_test-1.0.dist-info/METADATA'
35821adding 'chimerax_test-1.0.dist-info/WHEEL'
35822adding 'chimerax_test-1.0.dist-info/top_level.txt'
35823adding 'chimerax_test-1.0.dist-info/RECORD'
35824removing build\bdist.win-amd64\wheel
35825Distribution is in .\dist\ChimeraX_Test-1.0-cp311-cp311-win_amd64.whl
35826INFO:
35827
35828make sync
35829make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/test'
35830cp -av dist/*.whl ../../../build/sync
35831'dist/chimerax_test-1.0-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_test-1.0-cp311-cp311-win_amd64.whl'
35832make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/test'
35833make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/test'
35834make -C toolbar build
35835make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
35836if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35837 echo "missing ChimeraX application's python"; exit 1; \
35838else \
35839 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35840fi
35841INFO:
35842Executing: devel build . exit true
35843C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35844!!
35845
35846 ********************************************************************************
35847 Please consider removing the following classifiers in favor of a SPDX license expression:
35848
35849 License :: Free for non-commercial use
35850
35851 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35852 ********************************************************************************
35853
35854!!
35855 self._finalize_license_expression()
35856running build
35857running build_py
35858creating build\lib\chimerax\toolbar
35859copying src\manager.py -> build\lib\chimerax\toolbar
35860copying src\providers.py -> build\lib\chimerax\toolbar
35861copying src\tool.py -> build\lib\chimerax\toolbar
35862copying src\__init__.py -> build\lib\chimerax\toolbar
35863copying src\tool.html -> build\lib\chimerax\toolbar
35864creating build\lib\chimerax\toolbar\icons
35865copying src\icons\close-box.png -> build\lib\chimerax\toolbar\icons
35866copying src\icons\close-box.svg -> build\lib\chimerax\toolbar\icons
35867copying src\icons\content-save.png -> build\lib\chimerax\toolbar\icons
35868copying src\icons\content-save.svg -> build\lib\chimerax\toolbar\icons
35869copying src\icons\exit.png -> build\lib\chimerax\toolbar\icons
35870copying src\icons\file-image.png -> build\lib\chimerax\toolbar\icons
35871copying src\icons\open-in-app.png -> build\lib\chimerax\toolbar\icons
35872copying src\icons\open-in-app.svg -> build\lib\chimerax\toolbar\icons
35873copying src\icons\recentfiles-dark.png -> build\lib\chimerax\toolbar\icons
35874copying src\icons\recentfiles.png -> build\lib\chimerax\toolbar\icons
35875copying src\icons\redo-variant.png -> build\lib\chimerax\toolbar\icons
35876copying src\icons\redo-variant.svg -> build\lib\chimerax\toolbar\icons
35877copying src\icons\sideview.png -> build\lib\chimerax\toolbar\icons
35878copying src\icons\undo-variant.png -> build\lib\chimerax\toolbar\icons
35879copying src\icons\undo-variant.svg -> build\lib\chimerax\toolbar\icons
35880running bdist_wheel
35881installing to build\bdist.win-amd64\wheel
35882running install
35883running install_lib
35884creating build\bdist.win-amd64\wheel
35885creating build\bdist.win-amd64\wheel\chimerax
35886creating build\bdist.win-amd64\wheel\chimerax\toolbar
35887creating build\bdist.win-amd64\wheel\chimerax\toolbar\icons
35888copying build\lib\chimerax\toolbar\icons\close-box.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35889copying build\lib\chimerax\toolbar\icons\close-box.svg -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35890copying build\lib\chimerax\toolbar\icons\content-save.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35891copying build\lib\chimerax\toolbar\icons\content-save.svg -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35892copying build\lib\chimerax\toolbar\icons\exit.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35893copying build\lib\chimerax\toolbar\icons\file-image.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35894copying build\lib\chimerax\toolbar\icons\open-in-app.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35895copying build\lib\chimerax\toolbar\icons\open-in-app.svg -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35896copying build\lib\chimerax\toolbar\icons\recentfiles-dark.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35897copying build\lib\chimerax\toolbar\icons\recentfiles.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35898copying build\lib\chimerax\toolbar\icons\redo-variant.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35899copying build\lib\chimerax\toolbar\icons\redo-variant.svg -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35900copying build\lib\chimerax\toolbar\icons\sideview.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35901copying build\lib\chimerax\toolbar\icons\undo-variant.png -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35902copying build\lib\chimerax\toolbar\icons\undo-variant.svg -> build\bdist.win-amd64\wheel\.\chimerax\toolbar\icons
35903copying build\lib\chimerax\toolbar\manager.py -> build\bdist.win-amd64\wheel\.\chimerax\toolbar
35904copying build\lib\chimerax\toolbar\providers.py -> build\bdist.win-amd64\wheel\.\chimerax\toolbar
35905copying build\lib\chimerax\toolbar\tool.html -> build\bdist.win-amd64\wheel\.\chimerax\toolbar
35906copying build\lib\chimerax\toolbar\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\toolbar
35907copying build\lib\chimerax\toolbar\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\toolbar
35908running install_egg_info
35909running egg_info
35910creating ChimeraX_Toolbar.egg-info
35911writing ChimeraX_Toolbar.egg-info\PKG-INFO
35912writing dependency_links to ChimeraX_Toolbar.egg-info\dependency_links.txt
35913writing requirements to ChimeraX_Toolbar.egg-info\requires.txt
35914writing top-level names to ChimeraX_Toolbar.egg-info\top_level.txt
35915writing manifest file 'ChimeraX_Toolbar.egg-info\SOURCES.txt'
35916reading manifest file 'ChimeraX_Toolbar.egg-info\SOURCES.txt'
35917writing manifest file 'ChimeraX_Toolbar.egg-info\SOURCES.txt'
35918Copying ChimeraX_Toolbar.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Toolbar-1.2.3-py3.11.egg-info
35919running install_scripts
35920creating build\bdist.win-amd64\wheel\chimerax_toolbar-1.2.3.dist-info\WHEEL
35921creating 'dist\chimerax_toolbar-1.2.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
35922adding 'chimerax/toolbar/__init__.py'
35923adding 'chimerax/toolbar/manager.py'
35924adding 'chimerax/toolbar/providers.py'
35925adding 'chimerax/toolbar/tool.html'
35926adding 'chimerax/toolbar/tool.py'
35927adding 'chimerax/toolbar/icons/close-box.png'
35928adding 'chimerax/toolbar/icons/close-box.svg'
35929adding 'chimerax/toolbar/icons/content-save.png'
35930adding 'chimerax/toolbar/icons/content-save.svg'
35931adding 'chimerax/toolbar/icons/exit.png'
35932adding 'chimerax/toolbar/icons/file-image.png'
35933adding 'chimerax/toolbar/icons/open-in-app.png'
35934adding 'chimerax/toolbar/icons/open-in-app.svg'
35935adding 'chimerax/toolbar/icons/recentfiles-dark.png'
35936adding 'chimerax/toolbar/icons/recentfiles.png'
35937adding 'chimerax/toolbar/icons/redo-variant.png'
35938adding 'chimerax/toolbar/icons/redo-variant.svg'
35939adding 'chimerax/toolbar/icons/sideview.png'
35940adding 'chimerax/toolbar/icons/undo-variant.png'
35941adding 'chimerax/toolbar/icons/undo-variant.svg'
35942adding 'chimerax_toolbar-1.2.3.dist-info/METADATA'
35943adding 'chimerax_toolbar-1.2.3.dist-info/WHEEL'
35944adding 'chimerax_toolbar-1.2.3.dist-info/top_level.txt'
35945adding 'chimerax_toolbar-1.2.3.dist-info/RECORD'
35946removing build\bdist.win-amd64\wheel
35947Distribution is in .\dist\ChimeraX_Toolbar-1.2.3-py3-none-any.whl
35948INFO:
35949
35950make sync
35951make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
35952cp -av dist/*.whl ../../../build/sync
35953'dist/chimerax_toolbar-1.2.3-py3-none-any.whl' -> '../../../build/sync/chimerax_toolbar-1.2.3-py3-none-any.whl'
35954make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
35955make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/toolbar'
35956make -C topography build
35957make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
35958if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
35959 echo "missing ChimeraX application's python"; exit 1; \
35960else \
35961 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
35962fi
35963INFO:
35964Executing: devel build . exit true
35965C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
35966!!
35967
35968 ********************************************************************************
35969 Please consider removing the following classifiers in favor of a SPDX license expression:
35970
35971 License :: Free for non-commercial use
35972
35973 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
35974 ********************************************************************************
35975
35976!!
35977 self._finalize_license_expression()
35978running build
35979running build_py
35980creating build\lib\chimerax\topography
35981copying src\toposurf.py -> build\lib\chimerax\topography
35982copying src\__init__.py -> build\lib\chimerax\topography
35983running bdist_wheel
35984installing to build\bdist.win-amd64\wheel
35985running install
35986running install_lib
35987creating build\bdist.win-amd64\wheel
35988creating build\bdist.win-amd64\wheel\chimerax
35989creating build\bdist.win-amd64\wheel\chimerax\topography
35990copying build\lib\chimerax\topography\toposurf.py -> build\bdist.win-amd64\wheel\.\chimerax\topography
35991copying build\lib\chimerax\topography\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\topography
35992running install_egg_info
35993running egg_info
35994creating ChimeraX_Topography.egg-info
35995writing ChimeraX_Topography.egg-info\PKG-INFO
35996writing dependency_links to ChimeraX_Topography.egg-info\dependency_links.txt
35997writing requirements to ChimeraX_Topography.egg-info\requires.txt
35998writing top-level names to ChimeraX_Topography.egg-info\top_level.txt
35999writing manifest file 'ChimeraX_Topography.egg-info\SOURCES.txt'
36000reading manifest file 'ChimeraX_Topography.egg-info\SOURCES.txt'
36001writing manifest file 'ChimeraX_Topography.egg-info\SOURCES.txt'
36002Copying ChimeraX_Topography.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Topography-1.0-py3.11.egg-info
36003running install_scripts
36004creating build\bdist.win-amd64\wheel\chimerax_topography-1.0.dist-info\WHEEL
36005creating 'dist\chimerax_topography-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36006adding 'chimerax/topography/__init__.py'
36007adding 'chimerax/topography/toposurf.py'
36008adding 'chimerax_topography-1.0.dist-info/METADATA'
36009adding 'chimerax_topography-1.0.dist-info/WHEEL'
36010adding 'chimerax_topography-1.0.dist-info/top_level.txt'
36011adding 'chimerax_topography-1.0.dist-info/RECORD'
36012removing build\bdist.win-amd64\wheel
36013Distribution is in .\dist\ChimeraX_Topography-1.0-py3-none-any.whl
36014INFO:
36015
36016make sync
36017make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
36018cp -av dist/*.whl ../../../build/sync
36019'dist/chimerax_topography-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_topography-1.0-py3-none-any.whl'
36020make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
36021make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/topography'
36022make -C to_quest build
36023make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
36024if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36025 echo "missing ChimeraX application's python"; exit 1; \
36026else \
36027 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36028fi
36029INFO:
36030Executing: devel build . exit true
36031C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36032!!
36033
36034 ********************************************************************************
36035 Please consider removing the following classifiers in favor of a SPDX license expression:
36036
36037 License :: Free for non-commercial use
36038
36039 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36040 ********************************************************************************
36041
36042!!
36043 self._finalize_license_expression()
36044running build
36045running build_py
36046creating build\lib\chimerax\to_quest
36047copying src\toquest.py -> build\lib\chimerax\to_quest
36048copying src\__init__.py -> build\lib\chimerax\to_quest
36049running bdist_wheel
36050installing to build\bdist.win-amd64\wheel
36051running install
36052running install_lib
36053creating build\bdist.win-amd64\wheel
36054creating build\bdist.win-amd64\wheel\chimerax
36055creating build\bdist.win-amd64\wheel\chimerax\to_quest
36056copying build\lib\chimerax\to_quest\toquest.py -> build\bdist.win-amd64\wheel\.\chimerax\to_quest
36057copying build\lib\chimerax\to_quest\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\to_quest
36058running install_egg_info
36059running egg_info
36060creating ChimeraX_ToQuest.egg-info
36061writing ChimeraX_ToQuest.egg-info\PKG-INFO
36062writing dependency_links to ChimeraX_ToQuest.egg-info\dependency_links.txt
36063writing requirements to ChimeraX_ToQuest.egg-info\requires.txt
36064writing top-level names to ChimeraX_ToQuest.egg-info\top_level.txt
36065writing manifest file 'ChimeraX_ToQuest.egg-info\SOURCES.txt'
36066reading manifest file 'ChimeraX_ToQuest.egg-info\SOURCES.txt'
36067writing manifest file 'ChimeraX_ToQuest.egg-info\SOURCES.txt'
36068Copying ChimeraX_ToQuest.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ToQuest-1.0-py3.11.egg-info
36069running install_scripts
36070creating build\bdist.win-amd64\wheel\chimerax_toquest-1.0.dist-info\WHEEL
36071creating 'dist\chimerax_toquest-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36072adding 'chimerax/to_quest/__init__.py'
36073adding 'chimerax/to_quest/toquest.py'
36074adding 'chimerax_toquest-1.0.dist-info/METADATA'
36075adding 'chimerax_toquest-1.0.dist-info/WHEEL'
36076adding 'chimerax_toquest-1.0.dist-info/top_level.txt'
36077adding 'chimerax_toquest-1.0.dist-info/RECORD'
36078removing build\bdist.win-amd64\wheel
36079Distribution is in .\dist\ChimeraX_ToQuest-1.0-py3-none-any.whl
36080INFO:
36081
36082make sync
36083make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
36084cp -av dist/*.whl ../../../build/sync
36085'dist/chimerax_toquest-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_toquest-1.0-py3-none-any.whl'
36086make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
36087make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/to_quest'
36088make -C tug build
36089make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
36090if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36091 echo "missing ChimeraX application's python"; exit 1; \
36092else \
36093 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36094fi
36095INFO:
36096Executing: devel build . exit true
36097C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36098!!
36099
36100 ********************************************************************************
36101 Please consider removing the following classifiers in favor of a SPDX license expression:
36102
36103 License :: Free for non-commercial use
36104
36105 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36106 ********************************************************************************
36107
36108!!
36109 self._finalize_license_expression()
36110running build
36111running build_py
36112creating build\lib\chimerax\tug
36113copying src\minimize.py -> build\lib\chimerax\tug
36114copying src\tugatoms.py -> build\lib\chimerax\tug
36115copying src\tugcommand.py -> build\lib\chimerax\tug
36116copying src\__init__.py -> build\lib\chimerax\tug
36117copying src\tug.png -> build\lib\chimerax\tug
36118copying src\minimize.png -> build\lib\chimerax\tug
36119running bdist_wheel
36120installing to build\bdist.win-amd64\wheel
36121running install
36122running install_lib
36123creating build\bdist.win-amd64\wheel
36124creating build\bdist.win-amd64\wheel\chimerax
36125creating build\bdist.win-amd64\wheel\chimerax\tug
36126copying build\lib\chimerax\tug\minimize.png -> build\bdist.win-amd64\wheel\.\chimerax\tug
36127copying build\lib\chimerax\tug\minimize.py -> build\bdist.win-amd64\wheel\.\chimerax\tug
36128copying build\lib\chimerax\tug\tug.png -> build\bdist.win-amd64\wheel\.\chimerax\tug
36129copying build\lib\chimerax\tug\tugatoms.py -> build\bdist.win-amd64\wheel\.\chimerax\tug
36130copying build\lib\chimerax\tug\tugcommand.py -> build\bdist.win-amd64\wheel\.\chimerax\tug
36131copying build\lib\chimerax\tug\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\tug
36132running install_egg_info
36133running egg_info
36134creating ChimeraX_Tug.egg-info
36135writing ChimeraX_Tug.egg-info\PKG-INFO
36136writing dependency_links to ChimeraX_Tug.egg-info\dependency_links.txt
36137writing requirements to ChimeraX_Tug.egg-info\requires.txt
36138writing top-level names to ChimeraX_Tug.egg-info\top_level.txt
36139writing manifest file 'ChimeraX_Tug.egg-info\SOURCES.txt'
36140reading manifest file 'ChimeraX_Tug.egg-info\SOURCES.txt'
36141writing manifest file 'ChimeraX_Tug.egg-info\SOURCES.txt'
36142Copying ChimeraX_Tug.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Tug-1.0.1-py3.11.egg-info
36143running install_scripts
36144creating build\bdist.win-amd64\wheel\chimerax_tug-1.0.1.dist-info\WHEEL
36145creating 'dist\chimerax_tug-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36146adding 'chimerax/tug/__init__.py'
36147adding 'chimerax/tug/minimize.png'
36148adding 'chimerax/tug/minimize.py'
36149adding 'chimerax/tug/tug.png'
36150adding 'chimerax/tug/tugatoms.py'
36151adding 'chimerax/tug/tugcommand.py'
36152adding 'chimerax_tug-1.0.1.dist-info/METADATA'
36153adding 'chimerax_tug-1.0.1.dist-info/WHEEL'
36154adding 'chimerax_tug-1.0.1.dist-info/top_level.txt'
36155adding 'chimerax_tug-1.0.1.dist-info/RECORD'
36156removing build\bdist.win-amd64\wheel
36157Distribution is in .\dist\ChimeraX_Tug-1.0.1-py3-none-any.whl
36158INFO:
36159
36160make sync
36161make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
36162cp -av dist/*.whl ../../../build/sync
36163'dist/chimerax_tug-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_tug-1.0.1-py3-none-any.whl'
36164make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
36165make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/tug'
36166make -C ui build
36167make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
36168sed -e '/===/d' \
36169 -e 's,https:.*html,<a href="&">&</a>.,' \
36170 ../../../copyright.txt | \
36171 sed $'/COPYRIGHT_NOTICE/{r /dev/stdin\nd\n}' \
36172 src/about.html.in > src/about.html \
36173 || (rm src/about.html ; exit 1)
36174if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36175 echo "missing ChimeraX application's python"; exit 1; \
36176else \
36177 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36178fi
36179INFO:
36180Executing: devel build . exit true
36181C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36182!!
36183
36184 ********************************************************************************
36185 Please consider removing the following classifiers in favor of a SPDX license expression:
36186
36187 License :: Free for non-commercial use
36188
36189 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36190 ********************************************************************************
36191
36192!!
36193 self._finalize_license_expression()
36194running build
36195running build_py
36196creating build\lib\chimerax\ui
36197copying src\ask.py -> build\lib\chimerax\ui
36198copying src\cmd.py -> build\lib\chimerax\ui
36199copying src\core_settings_ui.py -> build\lib\chimerax\ui
36200copying src\file_history.py -> build\lib\chimerax\ui
36201copying src\font.py -> build\lib\chimerax\ui
36202copying src\graphics.py -> build\lib\chimerax\ui
36203copying src\gui.py -> build\lib\chimerax\ui
36204copying src\htmltool.py -> build\lib\chimerax\ui
36205copying src\open_save.py -> build\lib\chimerax\ui
36206copying src\redirect_logger.py -> build\lib\chimerax\ui
36207copying src\settings.py -> build\lib\chimerax\ui
36208copying src\statusbar.py -> build\lib\chimerax\ui
36209copying src\__init__.py -> build\lib\chimerax\ui
36210creating build\lib\chimerax\ui\html
36211copying src\html\utils.py -> build\lib\chimerax\ui\html
36212copying src\html\__init__.py -> build\lib\chimerax\ui\html
36213creating build\lib\chimerax\ui\icons
36214copying src\icons\__init__.py -> build\lib\chimerax\ui\icons
36215creating build\lib\chimerax\ui\options
36216copying src\options\containers.py -> build\lib\chimerax\ui\options
36217copying src\options\options.py -> build\lib\chimerax\ui\options
36218copying src\options\__init__.py -> build\lib\chimerax\ui\options
36219creating build\lib\chimerax\ui\widgets
36220copying src\widgets\citation.py -> build\lib\chimerax\ui\widgets
36221copying src\widgets\color_button.py -> build\lib\chimerax\ui\widgets
36222copying src\widgets\composite.py -> build\lib\chimerax\ui\widgets
36223copying src\widgets\disclosure.py -> build\lib\chimerax\ui\widgets
36224copying src\widgets\histogram.py -> build\lib\chimerax\ui\widgets
36225copying src\widgets\htmlview.py -> build\lib\chimerax\ui\widgets
36226copying src\widgets\item_chooser.py -> build\lib\chimerax\ui\widgets
36227copying src\widgets\item_table.py -> build\lib\chimerax\ui\widgets
36228copying src\widgets\palette_chooser.py -> build\lib\chimerax\ui\widgets
36229copying src\widgets\slider.py -> build\lib\chimerax\ui\widgets
36230copying src\widgets\tabbedtoolbar.py -> build\lib\chimerax\ui\widgets
36231copying src\widgets\tricheckbox.py -> build\lib\chimerax\ui\widgets
36232copying src\widgets\__init__.py -> build\lib\chimerax\ui\widgets
36233copying src\about.html -> build\lib\chimerax\ui
36234copying src\splash.jpg -> build\lib\chimerax\ui
36235copying src\icons\contract1.png -> build\lib\chimerax\ui\icons
36236copying src\icons\contract2.png -> build\lib\chimerax\ui\icons
36237copying src\icons\contract3.png -> build\lib\chimerax\ui\icons
36238copying src\icons\dark_multi.png -> build\lib\chimerax\ui\icons
36239copying src\icons\Default_PubMed.png -> build\lib\chimerax\ui\icons
36240copying src\icons\expand1.png -> build\lib\chimerax\ui\icons
36241copying src\icons\expand2.png -> build\lib\chimerax\ui\icons
36242copying src\icons\expand3.png -> build\lib\chimerax\ui\icons
36243copying src\icons\gear.png -> build\lib\chimerax\ui\icons
36244copying src\icons\half.png -> build\lib\chimerax\ui\icons
36245copying src\icons\half64.png -> build\lib\chimerax\ui\icons
36246copying src\icons\hidden.png -> build\lib\chimerax\ui\icons
36247copying src\icons\lightning_day.png -> build\lib\chimerax\ui\icons
36248copying src\icons\lightning_night.png -> build\lib\chimerax\ui\icons
36249copying src\icons\light_multi.png -> build\lib\chimerax\ui\icons
36250copying src\icons\minus.png -> build\lib\chimerax\ui\icons
36251copying src\icons\multi.old.png -> build\lib\chimerax\ui\icons
36252copying src\icons\multi.png -> build\lib\chimerax\ui\icons
36253copying src\icons\multi16.png -> build\lib\chimerax\ui\icons
36254copying src\icons\pause.png -> build\lib\chimerax\ui\icons
36255copying src\icons\pause128.png -> build\lib\chimerax\ui\icons
36256copying src\icons\play.png -> build\lib\chimerax\ui\icons
36257copying src\icons\play256.png -> build\lib\chimerax\ui\icons
36258copying src\icons\record.png -> build\lib\chimerax\ui\icons
36259copying src\icons\record128.png -> build\lib\chimerax\ui\icons
36260copying src\icons\red_circle.png -> build\lib\chimerax\ui\icons
36261copying src\icons\red_square.png -> build\lib\chimerax\ui\icons
36262copying src\icons\select.png -> build\lib\chimerax\ui\icons
36263copying src\icons\shown.png -> build\lib\chimerax\ui\icons
36264copying src\icons\snail.png -> build\lib\chimerax\ui\icons
36265copying src\icons\stop.png -> build\lib\chimerax\ui\icons
36266copying src\icons\stop128.png -> build\lib\chimerax\ui\icons
36267copying src\icons\x.png -> build\lib\chimerax\ui\icons
36268copying src\html\utils.py -> build\lib\chimerax\ui\html
36269copying src\html\__init__.py -> build\lib\chimerax\ui\html
36270creating build\lib\chimerax\ui\html\css
36271copying src\html\css\bootgrid-1.3.1.min.css -> build\lib\chimerax\ui\html\css
36272copying src\html\css\bootstrap-3.3.7.css -> build\lib\chimerax\ui\html\css
36273copying src\html\css\bootstrap-4.4.1.css -> build\lib\chimerax\ui\html\css
36274copying src\html\css\font-awesome-4.7.0.min.css -> build\lib\chimerax\ui\html\css
36275creating build\lib\chimerax\ui\html\fonts
36276copying src\html\fonts\fontawesome-webfont.eot -> build\lib\chimerax\ui\html\fonts
36277copying src\html\fonts\fontawesome-webfont.svg -> build\lib\chimerax\ui\html\fonts
36278copying src\html\fonts\fontawesome-webfont.ttf -> build\lib\chimerax\ui\html\fonts
36279copying src\html\fonts\fontawesome-webfont.woff -> build\lib\chimerax\ui\html\fonts
36280copying src\html\fonts\fontawesome-webfont.woff2 -> build\lib\chimerax\ui\html\fonts
36281copying src\html\fonts\glyphicons-halflings-regular.eot -> build\lib\chimerax\ui\html\fonts
36282copying src\html\fonts\glyphicons-halflings-regular.svg -> build\lib\chimerax\ui\html\fonts
36283copying src\html\fonts\glyphicons-halflings-regular.ttf -> build\lib\chimerax\ui\html\fonts
36284copying src\html\fonts\glyphicons-halflings-regular.woff -> build\lib\chimerax\ui\html\fonts
36285copying src\html\fonts\glyphicons-halflings-regular.woff2 -> build\lib\chimerax\ui\html\fonts
36286creating build\lib\chimerax\ui\html\js
36287copying src\html\js\bootgrid-1.3.1.min.js -> build\lib\chimerax\ui\html\js
36288copying src\html\js\bootstrap-3.3.7.js -> build\lib\chimerax\ui\html\js
36289copying src\html\js\bootstrap-4.4.1.js -> build\lib\chimerax\ui\html\js
36290copying src\html\js\jquery-3.3.1.min.js -> build\lib\chimerax\ui\html\js
36291running bdist_wheel
36292installing to build\bdist.win-amd64\wheel
36293running install
36294running install_lib
36295creating build\bdist.win-amd64\wheel
36296creating build\bdist.win-amd64\wheel\chimerax
36297creating build\bdist.win-amd64\wheel\chimerax\ui
36298copying build\lib\chimerax\ui\about.html -> build\bdist.win-amd64\wheel\.\chimerax\ui
36299copying build\lib\chimerax\ui\ask.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36300copying build\lib\chimerax\ui\cmd.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36301copying build\lib\chimerax\ui\core_settings_ui.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36302copying build\lib\chimerax\ui\file_history.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36303copying build\lib\chimerax\ui\font.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36304copying build\lib\chimerax\ui\graphics.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36305copying build\lib\chimerax\ui\gui.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36306creating build\bdist.win-amd64\wheel\chimerax\ui\html
36307creating build\bdist.win-amd64\wheel\chimerax\ui\html\css
36308copying build\lib\chimerax\ui\html\css\bootgrid-1.3.1.min.css -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\css
36309copying build\lib\chimerax\ui\html\css\bootstrap-3.3.7.css -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\css
36310copying build\lib\chimerax\ui\html\css\bootstrap-4.4.1.css -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\css
36311copying build\lib\chimerax\ui\html\css\font-awesome-4.7.0.min.css -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\css
36312creating build\bdist.win-amd64\wheel\chimerax\ui\html\fonts
36313copying build\lib\chimerax\ui\html\fonts\fontawesome-webfont.eot -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36314copying build\lib\chimerax\ui\html\fonts\fontawesome-webfont.svg -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36315copying build\lib\chimerax\ui\html\fonts\fontawesome-webfont.ttf -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36316copying build\lib\chimerax\ui\html\fonts\fontawesome-webfont.woff -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36317copying build\lib\chimerax\ui\html\fonts\fontawesome-webfont.woff2 -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36318copying build\lib\chimerax\ui\html\fonts\glyphicons-halflings-regular.eot -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36319copying build\lib\chimerax\ui\html\fonts\glyphicons-halflings-regular.svg -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36320copying build\lib\chimerax\ui\html\fonts\glyphicons-halflings-regular.ttf -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36321copying build\lib\chimerax\ui\html\fonts\glyphicons-halflings-regular.woff -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36322copying build\lib\chimerax\ui\html\fonts\glyphicons-halflings-regular.woff2 -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\fonts
36323creating build\bdist.win-amd64\wheel\chimerax\ui\html\js
36324copying build\lib\chimerax\ui\html\js\bootgrid-1.3.1.min.js -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\js
36325copying build\lib\chimerax\ui\html\js\bootstrap-3.3.7.js -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\js
36326copying build\lib\chimerax\ui\html\js\bootstrap-4.4.1.js -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\js
36327copying build\lib\chimerax\ui\html\js\jquery-3.3.1.min.js -> build\bdist.win-amd64\wheel\.\chimerax\ui\html\js
36328copying build\lib\chimerax\ui\html\utils.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\html
36329copying build\lib\chimerax\ui\html\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\html
36330copying build\lib\chimerax\ui\htmltool.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36331creating build\bdist.win-amd64\wheel\chimerax\ui\icons
36332copying build\lib\chimerax\ui\icons\contract1.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36333copying build\lib\chimerax\ui\icons\contract2.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36334copying build\lib\chimerax\ui\icons\contract3.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36335copying build\lib\chimerax\ui\icons\dark_multi.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36336copying build\lib\chimerax\ui\icons\Default_PubMed.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36337copying build\lib\chimerax\ui\icons\expand1.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36338copying build\lib\chimerax\ui\icons\expand2.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36339copying build\lib\chimerax\ui\icons\expand3.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36340copying build\lib\chimerax\ui\icons\gear.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36341copying build\lib\chimerax\ui\icons\half.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36342copying build\lib\chimerax\ui\icons\half64.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36343copying build\lib\chimerax\ui\icons\hidden.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36344copying build\lib\chimerax\ui\icons\lightning_day.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36345copying build\lib\chimerax\ui\icons\lightning_night.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36346copying build\lib\chimerax\ui\icons\light_multi.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36347copying build\lib\chimerax\ui\icons\minus.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36348copying build\lib\chimerax\ui\icons\multi.old.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36349copying build\lib\chimerax\ui\icons\multi.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36350copying build\lib\chimerax\ui\icons\multi16.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36351copying build\lib\chimerax\ui\icons\pause.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36352copying build\lib\chimerax\ui\icons\pause128.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36353copying build\lib\chimerax\ui\icons\play.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36354copying build\lib\chimerax\ui\icons\play256.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36355copying build\lib\chimerax\ui\icons\record.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36356copying build\lib\chimerax\ui\icons\record128.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36357copying build\lib\chimerax\ui\icons\red_circle.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36358copying build\lib\chimerax\ui\icons\red_square.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36359copying build\lib\chimerax\ui\icons\select.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36360copying build\lib\chimerax\ui\icons\shown.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36361copying build\lib\chimerax\ui\icons\snail.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36362copying build\lib\chimerax\ui\icons\stop.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36363copying build\lib\chimerax\ui\icons\stop128.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36364copying build\lib\chimerax\ui\icons\x.png -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36365copying build\lib\chimerax\ui\icons\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\icons
36366copying build\lib\chimerax\ui\open_save.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36367creating build\bdist.win-amd64\wheel\chimerax\ui\options
36368copying build\lib\chimerax\ui\options\containers.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\options
36369copying build\lib\chimerax\ui\options\options.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\options
36370copying build\lib\chimerax\ui\options\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\options
36371copying build\lib\chimerax\ui\redirect_logger.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36372copying build\lib\chimerax\ui\settings.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36373copying build\lib\chimerax\ui\splash.jpg -> build\bdist.win-amd64\wheel\.\chimerax\ui
36374copying build\lib\chimerax\ui\statusbar.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36375creating build\bdist.win-amd64\wheel\chimerax\ui\widgets
36376copying build\lib\chimerax\ui\widgets\citation.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36377copying build\lib\chimerax\ui\widgets\color_button.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36378copying build\lib\chimerax\ui\widgets\composite.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36379copying build\lib\chimerax\ui\widgets\disclosure.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36380copying build\lib\chimerax\ui\widgets\histogram.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36381copying build\lib\chimerax\ui\widgets\htmlview.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36382copying build\lib\chimerax\ui\widgets\item_chooser.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36383copying build\lib\chimerax\ui\widgets\item_table.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36384copying build\lib\chimerax\ui\widgets\palette_chooser.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36385copying build\lib\chimerax\ui\widgets\slider.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36386copying build\lib\chimerax\ui\widgets\tabbedtoolbar.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36387copying build\lib\chimerax\ui\widgets\tricheckbox.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36388copying build\lib\chimerax\ui\widgets\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\ui\widgets
36389copying build\lib\chimerax\ui\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\ui
36390running install_egg_info
36391running egg_info
36392creating ChimeraX_UI.egg-info
36393writing ChimeraX_UI.egg-info\PKG-INFO
36394writing dependency_links to ChimeraX_UI.egg-info\dependency_links.txt
36395writing requirements to ChimeraX_UI.egg-info\requires.txt
36396writing top-level names to ChimeraX_UI.egg-info\top_level.txt
36397writing manifest file 'ChimeraX_UI.egg-info\SOURCES.txt'
36398reading manifest file 'ChimeraX_UI.egg-info\SOURCES.txt'
36399writing manifest file 'ChimeraX_UI.egg-info\SOURCES.txt'
36400Copying ChimeraX_UI.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_UI-1.48.3-py3.11.egg-info
36401running install_scripts
36402creating build\bdist.win-amd64\wheel\chimerax_ui-1.48.3.dist-info\WHEEL
36403creating 'dist\chimerax_ui-1.48.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36404adding 'chimerax/ui/__init__.py'
36405adding 'chimerax/ui/about.html'
36406adding 'chimerax/ui/ask.py'
36407adding 'chimerax/ui/cmd.py'
36408adding 'chimerax/ui/core_settings_ui.py'
36409adding 'chimerax/ui/file_history.py'
36410adding 'chimerax/ui/font.py'
36411adding 'chimerax/ui/graphics.py'
36412adding 'chimerax/ui/gui.py'
36413adding 'chimerax/ui/htmltool.py'
36414adding 'chimerax/ui/open_save.py'
36415adding 'chimerax/ui/redirect_logger.py'
36416adding 'chimerax/ui/settings.py'
36417adding 'chimerax/ui/splash.jpg'
36418adding 'chimerax/ui/statusbar.py'
36419adding 'chimerax/ui/html/__init__.py'
36420adding 'chimerax/ui/html/utils.py'
36421adding 'chimerax/ui/html/css/bootgrid-1.3.1.min.css'
36422adding 'chimerax/ui/html/css/bootstrap-3.3.7.css'
36423adding 'chimerax/ui/html/css/bootstrap-4.4.1.css'
36424adding 'chimerax/ui/html/css/font-awesome-4.7.0.min.css'
36425adding 'chimerax/ui/html/fonts/fontawesome-webfont.eot'
36426adding 'chimerax/ui/html/fonts/fontawesome-webfont.svg'
36427adding 'chimerax/ui/html/fonts/fontawesome-webfont.ttf'
36428adding 'chimerax/ui/html/fonts/fontawesome-webfont.woff'
36429adding 'chimerax/ui/html/fonts/fontawesome-webfont.woff2'
36430adding 'chimerax/ui/html/fonts/glyphicons-halflings-regular.eot'
36431adding 'chimerax/ui/html/fonts/glyphicons-halflings-regular.svg'
36432adding 'chimerax/ui/html/fonts/glyphicons-halflings-regular.ttf'
36433adding 'chimerax/ui/html/fonts/glyphicons-halflings-regular.woff'
36434adding 'chimerax/ui/html/fonts/glyphicons-halflings-regular.woff2'
36435adding 'chimerax/ui/html/js/bootgrid-1.3.1.min.js'
36436adding 'chimerax/ui/html/js/bootstrap-3.3.7.js'
36437adding 'chimerax/ui/html/js/bootstrap-4.4.1.js'
36438adding 'chimerax/ui/html/js/jquery-3.3.1.min.js'
36439adding 'chimerax/ui/icons/Default_PubMed.png'
36440adding 'chimerax/ui/icons/__init__.py'
36441adding 'chimerax/ui/icons/contract1.png'
36442adding 'chimerax/ui/icons/contract2.png'
36443adding 'chimerax/ui/icons/contract3.png'
36444adding 'chimerax/ui/icons/dark_multi.png'
36445adding 'chimerax/ui/icons/expand1.png'
36446adding 'chimerax/ui/icons/expand2.png'
36447adding 'chimerax/ui/icons/expand3.png'
36448adding 'chimerax/ui/icons/gear.png'
36449adding 'chimerax/ui/icons/half.png'
36450adding 'chimerax/ui/icons/half64.png'
36451adding 'chimerax/ui/icons/hidden.png'
36452adding 'chimerax/ui/icons/light_multi.png'
36453adding 'chimerax/ui/icons/lightning_day.png'
36454adding 'chimerax/ui/icons/lightning_night.png'
36455adding 'chimerax/ui/icons/minus.png'
36456adding 'chimerax/ui/icons/multi.old.png'
36457adding 'chimerax/ui/icons/multi.png'
36458adding 'chimerax/ui/icons/multi16.png'
36459adding 'chimerax/ui/icons/pause.png'
36460adding 'chimerax/ui/icons/pause128.png'
36461adding 'chimerax/ui/icons/play.png'
36462adding 'chimerax/ui/icons/play256.png'
36463adding 'chimerax/ui/icons/record.png'
36464adding 'chimerax/ui/icons/record128.png'
36465adding 'chimerax/ui/icons/red_circle.png'
36466adding 'chimerax/ui/icons/red_square.png'
36467adding 'chimerax/ui/icons/select.png'
36468adding 'chimerax/ui/icons/shown.png'
36469adding 'chimerax/ui/icons/snail.png'
36470adding 'chimerax/ui/icons/stop.png'
36471adding 'chimerax/ui/icons/stop128.png'
36472adding 'chimerax/ui/icons/x.png'
36473adding 'chimerax/ui/options/__init__.py'
36474adding 'chimerax/ui/options/containers.py'
36475adding 'chimerax/ui/options/options.py'
36476adding 'chimerax/ui/widgets/__init__.py'
36477adding 'chimerax/ui/widgets/citation.py'
36478adding 'chimerax/ui/widgets/color_button.py'
36479adding 'chimerax/ui/widgets/composite.py'
36480adding 'chimerax/ui/widgets/disclosure.py'
36481adding 'chimerax/ui/widgets/histogram.py'
36482adding 'chimerax/ui/widgets/htmlview.py'
36483adding 'chimerax/ui/widgets/item_chooser.py'
36484adding 'chimerax/ui/widgets/item_table.py'
36485adding 'chimerax/ui/widgets/palette_chooser.py'
36486adding 'chimerax/ui/widgets/slider.py'
36487adding 'chimerax/ui/widgets/tabbedtoolbar.py'
36488adding 'chimerax/ui/widgets/tricheckbox.py'
36489adding 'chimerax_ui-1.48.3.dist-info/METADATA'
36490adding 'chimerax_ui-1.48.3.dist-info/WHEEL'
36491adding 'chimerax_ui-1.48.3.dist-info/top_level.txt'
36492adding 'chimerax_ui-1.48.3.dist-info/RECORD'
36493removing build\bdist.win-amd64\wheel
36494Distribution is in .\dist\ChimeraX_UI-1.48.3-py3-none-any.whl
36495INFO:
36496
36497make sync
36498make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
36499cp -av dist/*.whl ../../../build/sync
36500'dist/chimerax_ui-1.48.3-py3-none-any.whl' -> '../../../build/sync/chimerax_ui-1.48.3-py3-none-any.whl'
36501make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
36502make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/ui'
36503make -C umap build
36504make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
36505if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36506 echo "missing ChimeraX application's python"; exit 1; \
36507else \
36508 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36509fi
36510INFO:
36511Executing: devel build . exit true
36512C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36513!!
36514
36515 ********************************************************************************
36516 Please consider removing the following classifiers in favor of a SPDX license expression:
36517
36518 License :: Free for non-commercial use
36519
36520 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36521 ********************************************************************************
36522
36523!!
36524 self._finalize_license_expression()
36525running build
36526running build_py
36527creating build\lib\chimerax\umap
36528copying src\umap.py -> build\lib\chimerax\umap
36529copying src\__init__.py -> build\lib\chimerax\umap
36530running bdist_wheel
36531installing to build\bdist.win-amd64\wheel
36532running install
36533running install_lib
36534creating build\bdist.win-amd64\wheel
36535creating build\bdist.win-amd64\wheel\chimerax
36536creating build\bdist.win-amd64\wheel\chimerax\umap
36537copying build\lib\chimerax\umap\umap.py -> build\bdist.win-amd64\wheel\.\chimerax\umap
36538copying build\lib\chimerax\umap\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\umap
36539running install_egg_info
36540running egg_info
36541creating ChimeraX_Umap.egg-info
36542writing ChimeraX_Umap.egg-info\PKG-INFO
36543writing dependency_links to ChimeraX_Umap.egg-info\dependency_links.txt
36544writing requirements to ChimeraX_Umap.egg-info\requires.txt
36545writing top-level names to ChimeraX_Umap.egg-info\top_level.txt
36546writing manifest file 'ChimeraX_Umap.egg-info\SOURCES.txt'
36547reading manifest file 'ChimeraX_Umap.egg-info\SOURCES.txt'
36548writing manifest file 'ChimeraX_Umap.egg-info\SOURCES.txt'
36549Copying ChimeraX_Umap.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Umap-1.0-py3.11.egg-info
36550running install_scripts
36551creating build\bdist.win-amd64\wheel\chimerax_umap-1.0.dist-info\WHEEL
36552creating 'dist\chimerax_umap-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36553adding 'chimerax/umap/__init__.py'
36554adding 'chimerax/umap/umap.py'
36555adding 'chimerax_umap-1.0.dist-info/METADATA'
36556adding 'chimerax_umap-1.0.dist-info/WHEEL'
36557adding 'chimerax_umap-1.0.dist-info/top_level.txt'
36558adding 'chimerax_umap-1.0.dist-info/RECORD'
36559removing build\bdist.win-amd64\wheel
36560Distribution is in .\dist\ChimeraX_Umap-1.0-py3-none-any.whl
36561INFO:
36562
36563make sync
36564make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
36565cp -av dist/*.whl ../../../build/sync
36566'dist/chimerax_umap-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_umap-1.0-py3-none-any.whl'
36567make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
36568make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/umap'
36569make -C uniprot build
36570make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
36571if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36572 echo "missing ChimeraX application's python"; exit 1; \
36573else \
36574 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36575fi
36576INFO:
36577Executing: devel build . exit true
36578C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36579!!
36580
36581 ********************************************************************************
36582 Please consider removing the following classifiers in favor of a SPDX license expression:
36583
36584 License :: Free for non-commercial use
36585
36586 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36587 ********************************************************************************
36588
36589!!
36590 self._finalize_license_expression()
36591running build
36592running build_py
36593creating build\lib\chimerax\uniprot
36594copying src\fetch_uniprot.py -> build\lib\chimerax\uniprot
36595copying src\__init__.py -> build\lib\chimerax\uniprot
36596running bdist_wheel
36597installing to build\bdist.win-amd64\wheel
36598running install
36599running install_lib
36600creating build\bdist.win-amd64\wheel
36601creating build\bdist.win-amd64\wheel\chimerax
36602creating build\bdist.win-amd64\wheel\chimerax\uniprot
36603copying build\lib\chimerax\uniprot\fetch_uniprot.py -> build\bdist.win-amd64\wheel\.\chimerax\uniprot
36604copying build\lib\chimerax\uniprot\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\uniprot
36605running install_egg_info
36606running egg_info
36607creating ChimeraX_uniprot.egg-info
36608writing ChimeraX_uniprot.egg-info\PKG-INFO
36609writing dependency_links to ChimeraX_uniprot.egg-info\dependency_links.txt
36610writing requirements to ChimeraX_uniprot.egg-info\requires.txt
36611writing top-level names to ChimeraX_uniprot.egg-info\top_level.txt
36612writing manifest file 'ChimeraX_uniprot.egg-info\SOURCES.txt'
36613reading manifest file 'ChimeraX_uniprot.egg-info\SOURCES.txt'
36614writing manifest file 'ChimeraX_uniprot.egg-info\SOURCES.txt'
36615Copying ChimeraX_uniprot.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_uniprot-2.3.1-py3.11.egg-info
36616running install_scripts
36617creating build\bdist.win-amd64\wheel\chimerax_uniprot-2.3.1.dist-info\WHEEL
36618creating 'dist\chimerax_uniprot-2.3.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36619adding 'chimerax/uniprot/__init__.py'
36620adding 'chimerax/uniprot/fetch_uniprot.py'
36621adding 'chimerax_uniprot-2.3.1.dist-info/METADATA'
36622adding 'chimerax_uniprot-2.3.1.dist-info/WHEEL'
36623adding 'chimerax_uniprot-2.3.1.dist-info/top_level.txt'
36624adding 'chimerax_uniprot-2.3.1.dist-info/RECORD'
36625removing build\bdist.win-amd64\wheel
36626Distribution is in .\dist\ChimeraX_uniprot-2.3.1-py3-none-any.whl
36627INFO:
36628
36629make sync
36630make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
36631cp -av dist/*.whl ../../../build/sync
36632'dist/chimerax_uniprot-2.3.1-py3-none-any.whl' -> '../../../build/sync/chimerax_uniprot-2.3.1-py3-none-any.whl'
36633make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
36634make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/uniprot'
36635make -C unit_cell build
36636make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
36637if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36638 echo "missing ChimeraX application's python"; exit 1; \
36639else \
36640 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36641fi
36642INFO:
36643Executing: devel build . exit true
36644C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36645!!
36646
36647 ********************************************************************************
36648 Please consider removing the following classifiers in favor of a SPDX license expression:
36649
36650 License :: Free for non-commercial use
36651
36652 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36653 ********************************************************************************
36654
36655!!
36656 self._finalize_license_expression()
36657running build
36658running build_py
36659creating build\lib\chimerax\unit_cell
36660copying src\unitcell.py -> build\lib\chimerax\unit_cell
36661copying src\unitcellcmd.py -> build\lib\chimerax\unit_cell
36662copying src\unitcellgui.py -> build\lib\chimerax\unit_cell
36663copying src\__init__.py -> build\lib\chimerax\unit_cell
36664running bdist_wheel
36665installing to build\bdist.win-amd64\wheel
36666running install
36667running install_lib
36668creating build\bdist.win-amd64\wheel
36669creating build\bdist.win-amd64\wheel\chimerax
36670creating build\bdist.win-amd64\wheel\chimerax\unit_cell
36671copying build\lib\chimerax\unit_cell\unitcell.py -> build\bdist.win-amd64\wheel\.\chimerax\unit_cell
36672copying build\lib\chimerax\unit_cell\unitcellcmd.py -> build\bdist.win-amd64\wheel\.\chimerax\unit_cell
36673copying build\lib\chimerax\unit_cell\unitcellgui.py -> build\bdist.win-amd64\wheel\.\chimerax\unit_cell
36674copying build\lib\chimerax\unit_cell\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\unit_cell
36675running install_egg_info
36676running egg_info
36677creating ChimeraX_UnitCell.egg-info
36678writing ChimeraX_UnitCell.egg-info\PKG-INFO
36679writing dependency_links to ChimeraX_UnitCell.egg-info\dependency_links.txt
36680writing requirements to ChimeraX_UnitCell.egg-info\requires.txt
36681writing top-level names to ChimeraX_UnitCell.egg-info\top_level.txt
36682writing manifest file 'ChimeraX_UnitCell.egg-info\SOURCES.txt'
36683reading manifest file 'ChimeraX_UnitCell.egg-info\SOURCES.txt'
36684writing manifest file 'ChimeraX_UnitCell.egg-info\SOURCES.txt'
36685Copying ChimeraX_UnitCell.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_UnitCell-1.0.1-py3.11.egg-info
36686running install_scripts
36687creating build\bdist.win-amd64\wheel\chimerax_unitcell-1.0.1.dist-info\WHEEL
36688creating 'dist\chimerax_unitcell-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36689adding 'chimerax/unit_cell/__init__.py'
36690adding 'chimerax/unit_cell/unitcell.py'
36691adding 'chimerax/unit_cell/unitcellcmd.py'
36692adding 'chimerax/unit_cell/unitcellgui.py'
36693adding 'chimerax_unitcell-1.0.1.dist-info/METADATA'
36694adding 'chimerax_unitcell-1.0.1.dist-info/WHEEL'
36695adding 'chimerax_unitcell-1.0.1.dist-info/top_level.txt'
36696adding 'chimerax_unitcell-1.0.1.dist-info/RECORD'
36697removing build\bdist.win-amd64\wheel
36698Distribution is in .\dist\ChimeraX_UnitCell-1.0.1-py3-none-any.whl
36699INFO:
36700
36701make sync
36702make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
36703cp -av dist/*.whl ../../../build/sync
36704'dist/chimerax_unitcell-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_unitcell-1.0.1-py3-none-any.whl'
36705make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
36706make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/unit_cell'
36707make -C viewdock build
36708make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
36709if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36710 echo "missing ChimeraX application's python"; exit 1; \
36711else \
36712 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36713fi
36714INFO:
36715Executing: devel build . exit true
36716C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36717!!
36718
36719 ********************************************************************************
36720 Please consider removing the following classifiers in favor of a SPDX license expression:
36721
36722 License :: Free for non-commercial use
36723
36724 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36725 ********************************************************************************
36726
36727!!
36728 self._finalize_license_expression()
36729running build
36730running build_py
36731creating build\lib\chimerax\viewdock
36732copying src\io.py -> build\lib\chimerax\viewdock
36733copying src\mousemode.py -> build\lib\chimerax\viewdock
36734copying src\pdbqt.py -> build\lib\chimerax\viewdock
36735copying src\tool.py -> build\lib\chimerax\viewdock
36736copying src\__init__.py -> build\lib\chimerax\viewdock
36737creating build\lib\chimerax\viewdock\icons
36738copying src\icons\nextdocking.png -> build\lib\chimerax\viewdock\icons
36739running bdist_wheel
36740installing to build\bdist.win-amd64\wheel
36741running install
36742running install_lib
36743creating build\bdist.win-amd64\wheel
36744creating build\bdist.win-amd64\wheel\chimerax
36745creating build\bdist.win-amd64\wheel\chimerax\viewdock
36746creating build\bdist.win-amd64\wheel\chimerax\viewdock\icons
36747copying build\lib\chimerax\viewdock\icons\nextdocking.png -> build\bdist.win-amd64\wheel\.\chimerax\viewdock\icons
36748copying build\lib\chimerax\viewdock\io.py -> build\bdist.win-amd64\wheel\.\chimerax\viewdock
36749copying build\lib\chimerax\viewdock\mousemode.py -> build\bdist.win-amd64\wheel\.\chimerax\viewdock
36750copying build\lib\chimerax\viewdock\pdbqt.py -> build\bdist.win-amd64\wheel\.\chimerax\viewdock
36751copying build\lib\chimerax\viewdock\tool.py -> build\bdist.win-amd64\wheel\.\chimerax\viewdock
36752copying build\lib\chimerax\viewdock\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\viewdock
36753running install_egg_info
36754running egg_info
36755creating ChimeraX_ViewDock.egg-info
36756writing ChimeraX_ViewDock.egg-info\PKG-INFO
36757writing dependency_links to ChimeraX_ViewDock.egg-info\dependency_links.txt
36758writing requirements to ChimeraX_ViewDock.egg-info\requires.txt
36759writing top-level names to ChimeraX_ViewDock.egg-info\top_level.txt
36760writing manifest file 'ChimeraX_ViewDock.egg-info\SOURCES.txt'
36761reading manifest file 'ChimeraX_ViewDock.egg-info\SOURCES.txt'
36762writing manifest file 'ChimeraX_ViewDock.egg-info\SOURCES.txt'
36763Copying ChimeraX_ViewDock.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_ViewDock-1.4.2-py3.11.egg-info
36764running install_scripts
36765creating build\bdist.win-amd64\wheel\chimerax_viewdock-1.4.2.dist-info\WHEEL
36766creating 'dist\chimerax_viewdock-1.4.2-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36767adding 'chimerax/viewdock/__init__.py'
36768adding 'chimerax/viewdock/io.py'
36769adding 'chimerax/viewdock/mousemode.py'
36770adding 'chimerax/viewdock/pdbqt.py'
36771adding 'chimerax/viewdock/tool.py'
36772adding 'chimerax/viewdock/icons/nextdocking.png'
36773adding 'chimerax_viewdock-1.4.2.dist-info/METADATA'
36774adding 'chimerax_viewdock-1.4.2.dist-info/WHEEL'
36775adding 'chimerax_viewdock-1.4.2.dist-info/top_level.txt'
36776adding 'chimerax_viewdock-1.4.2.dist-info/RECORD'
36777removing build\bdist.win-amd64\wheel
36778Distribution is in .\dist\ChimeraX_ViewDock-1.4.2-py3-none-any.whl
36779INFO:
36780
36781make sync
36782make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
36783cp -av dist/*.whl ../../../build/sync
36784'dist/chimerax_viewdock-1.4.2-py3-none-any.whl' -> '../../../build/sync/chimerax_viewdock-1.4.2-py3-none-any.whl'
36785make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
36786make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viewdock'
36787make -C viperdb build
36788make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
36789if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36790 echo "missing ChimeraX application's python"; exit 1; \
36791else \
36792 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36793fi
36794INFO:
36795Executing: devel build . exit true
36796C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36797!!
36798
36799 ********************************************************************************
36800 Please consider removing the following classifiers in favor of a SPDX license expression:
36801
36802 License :: Free for non-commercial use
36803
36804 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36805 ********************************************************************************
36806
36807!!
36808 self._finalize_license_expression()
36809running build
36810running build_py
36811creating build\lib\chimerax\viperdb
36812copying src\__init__.py -> build\lib\chimerax\viperdb
36813running bdist_wheel
36814installing to build\bdist.win-amd64\wheel
36815running install
36816running install_lib
36817creating build\bdist.win-amd64\wheel
36818creating build\bdist.win-amd64\wheel\chimerax
36819creating build\bdist.win-amd64\wheel\chimerax\viperdb
36820copying build\lib\chimerax\viperdb\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\viperdb
36821running install_egg_info
36822running egg_info
36823creating ChimeraX_VIPERdb.egg-info
36824writing ChimeraX_VIPERdb.egg-info\PKG-INFO
36825writing dependency_links to ChimeraX_VIPERdb.egg-info\dependency_links.txt
36826writing requirements to ChimeraX_VIPERdb.egg-info\requires.txt
36827writing top-level names to ChimeraX_VIPERdb.egg-info\top_level.txt
36828writing manifest file 'ChimeraX_VIPERdb.egg-info\SOURCES.txt'
36829reading manifest file 'ChimeraX_VIPERdb.egg-info\SOURCES.txt'
36830writing manifest file 'ChimeraX_VIPERdb.egg-info\SOURCES.txt'
36831Copying ChimeraX_VIPERdb.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_VIPERdb-1.0-py3.11.egg-info
36832running install_scripts
36833creating build\bdist.win-amd64\wheel\chimerax_viperdb-1.0.dist-info\WHEEL
36834creating 'dist\chimerax_viperdb-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36835adding 'chimerax/viperdb/__init__.py'
36836adding 'chimerax_viperdb-1.0.dist-info/METADATA'
36837adding 'chimerax_viperdb-1.0.dist-info/WHEEL'
36838adding 'chimerax_viperdb-1.0.dist-info/top_level.txt'
36839adding 'chimerax_viperdb-1.0.dist-info/RECORD'
36840removing build\bdist.win-amd64\wheel
36841Distribution is in .\dist\ChimeraX_VIPERdb-1.0-py3-none-any.whl
36842INFO:
36843
36844make sync
36845make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
36846cp -av dist/*.whl ../../../build/sync
36847'dist/chimerax_viperdb-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_viperdb-1.0-py3-none-any.whl'
36848make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
36849make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/viperdb'
36850make -C vive build
36851make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
36852if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36853 echo "missing ChimeraX application's python"; exit 1; \
36854else \
36855 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36856fi
36857INFO:
36858Executing: devel build . exit true
36859C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36860!!
36861
36862 ********************************************************************************
36863 Please consider removing the following classifiers in favor of a SPDX license expression:
36864
36865 License :: Free for non-commercial use
36866
36867 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36868 ********************************************************************************
36869
36870!!
36871 self._finalize_license_expression()
36872running build
36873running build_py
36874creating build\lib\chimerax\vive
36875copying src\openxr.py -> build\lib\chimerax\vive
36876copying src\passthrough.py -> build\lib\chimerax\vive
36877copying src\vr.py -> build\lib\chimerax\vive
36878copying src\xr.py -> build\lib\chimerax\vive
36879copying src\xr_screens.py -> build\lib\chimerax\vive
36880copying src\__init__.py -> build\lib\chimerax\vive
36881copying src\menu_icon.png -> build\lib\chimerax\vive
36882copying src\no_action.png -> build\lib\chimerax\vive
36883copying src\command_icon.png -> build\lib\chimerax\vive
36884running bdist_wheel
36885installing to build\bdist.win-amd64\wheel
36886running install
36887running install_lib
36888creating build\bdist.win-amd64\wheel
36889creating build\bdist.win-amd64\wheel\chimerax
36890creating build\bdist.win-amd64\wheel\chimerax\vive
36891copying build\lib\chimerax\vive\command_icon.png -> build\bdist.win-amd64\wheel\.\chimerax\vive
36892copying build\lib\chimerax\vive\menu_icon.png -> build\bdist.win-amd64\wheel\.\chimerax\vive
36893copying build\lib\chimerax\vive\no_action.png -> build\bdist.win-amd64\wheel\.\chimerax\vive
36894copying build\lib\chimerax\vive\openxr.py -> build\bdist.win-amd64\wheel\.\chimerax\vive
36895copying build\lib\chimerax\vive\passthrough.py -> build\bdist.win-amd64\wheel\.\chimerax\vive
36896copying build\lib\chimerax\vive\vr.py -> build\bdist.win-amd64\wheel\.\chimerax\vive
36897copying build\lib\chimerax\vive\xr.py -> build\bdist.win-amd64\wheel\.\chimerax\vive
36898copying build\lib\chimerax\vive\xr_screens.py -> build\bdist.win-amd64\wheel\.\chimerax\vive
36899copying build\lib\chimerax\vive\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\vive
36900running install_egg_info
36901running egg_info
36902creating ChimeraX_Vive.egg-info
36903writing ChimeraX_Vive.egg-info\PKG-INFO
36904writing dependency_links to ChimeraX_Vive.egg-info\dependency_links.txt
36905writing requirements to ChimeraX_Vive.egg-info\requires.txt
36906writing top-level names to ChimeraX_Vive.egg-info\top_level.txt
36907writing manifest file 'ChimeraX_Vive.egg-info\SOURCES.txt'
36908reading manifest file 'ChimeraX_Vive.egg-info\SOURCES.txt'
36909writing manifest file 'ChimeraX_Vive.egg-info\SOURCES.txt'
36910Copying ChimeraX_Vive.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Vive-1.1-py3.11.egg-info
36911running install_scripts
36912creating build\bdist.win-amd64\wheel\chimerax_vive-1.1.dist-info\WHEEL
36913creating 'dist\chimerax_vive-1.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36914adding 'chimerax/vive/__init__.py'
36915adding 'chimerax/vive/command_icon.png'
36916adding 'chimerax/vive/menu_icon.png'
36917adding 'chimerax/vive/no_action.png'
36918adding 'chimerax/vive/openxr.py'
36919adding 'chimerax/vive/passthrough.py'
36920adding 'chimerax/vive/vr.py'
36921adding 'chimerax/vive/xr.py'
36922adding 'chimerax/vive/xr_screens.py'
36923adding 'chimerax_vive-1.1.dist-info/METADATA'
36924adding 'chimerax_vive-1.1.dist-info/WHEEL'
36925adding 'chimerax_vive-1.1.dist-info/top_level.txt'
36926adding 'chimerax_vive-1.1.dist-info/RECORD'
36927removing build\bdist.win-amd64\wheel
36928Distribution is in .\dist\ChimeraX_Vive-1.1-py3-none-any.whl
36929INFO:
36930
36931make sync
36932make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
36933cp -av dist/*.whl ../../../build/sync
36934'dist/chimerax_vive-1.1-py3-none-any.whl' -> '../../../build/sync/chimerax_vive-1.1-py3-none-any.whl'
36935make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
36936make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vive'
36937make -C volume_menu build
36938make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
36939if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
36940 echo "missing ChimeraX application's python"; exit 1; \
36941else \
36942 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
36943fi
36944INFO:
36945Executing: devel build . exit true
36946C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
36947!!
36948
36949 ********************************************************************************
36950 Please consider removing the following classifiers in favor of a SPDX license expression:
36951
36952 License :: Free for non-commercial use
36953
36954 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
36955 ********************************************************************************
36956
36957!!
36958 self._finalize_license_expression()
36959running build
36960running build_py
36961creating build\lib\chimerax\volume_menu
36962copying src\volmenu.py -> build\lib\chimerax\volume_menu
36963copying src\__init__.py -> build\lib\chimerax\volume_menu
36964running bdist_wheel
36965installing to build\bdist.win-amd64\wheel
36966running install
36967running install_lib
36968creating build\bdist.win-amd64\wheel
36969creating build\bdist.win-amd64\wheel\chimerax
36970creating build\bdist.win-amd64\wheel\chimerax\volume_menu
36971copying build\lib\chimerax\volume_menu\volmenu.py -> build\bdist.win-amd64\wheel\.\chimerax\volume_menu
36972copying build\lib\chimerax\volume_menu\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\volume_menu
36973running install_egg_info
36974running egg_info
36975creating ChimeraX_VolumeMenu.egg-info
36976writing ChimeraX_VolumeMenu.egg-info\PKG-INFO
36977writing dependency_links to ChimeraX_VolumeMenu.egg-info\dependency_links.txt
36978writing requirements to ChimeraX_VolumeMenu.egg-info\requires.txt
36979writing top-level names to ChimeraX_VolumeMenu.egg-info\top_level.txt
36980writing manifest file 'ChimeraX_VolumeMenu.egg-info\SOURCES.txt'
36981reading manifest file 'ChimeraX_VolumeMenu.egg-info\SOURCES.txt'
36982writing manifest file 'ChimeraX_VolumeMenu.egg-info\SOURCES.txt'
36983Copying ChimeraX_VolumeMenu.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_VolumeMenu-1.0.1-py3.11.egg-info
36984running install_scripts
36985creating build\bdist.win-amd64\wheel\chimerax_volumemenu-1.0.1.dist-info\WHEEL
36986creating 'dist\chimerax_volumemenu-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
36987adding 'chimerax/volume_menu/__init__.py'
36988adding 'chimerax/volume_menu/volmenu.py'
36989adding 'chimerax_volumemenu-1.0.1.dist-info/METADATA'
36990adding 'chimerax_volumemenu-1.0.1.dist-info/WHEEL'
36991adding 'chimerax_volumemenu-1.0.1.dist-info/top_level.txt'
36992adding 'chimerax_volumemenu-1.0.1.dist-info/RECORD'
36993removing build\bdist.win-amd64\wheel
36994Distribution is in .\dist\ChimeraX_VolumeMenu-1.0.1-py3-none-any.whl
36995INFO:
36996
36997make sync
36998make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
36999cp -av dist/*.whl ../../../build/sync
37000'dist/chimerax_volumemenu-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_volumemenu-1.0.1-py3-none-any.whl'
37001make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
37002make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/volume_menu'
37003make -C vrml build
37004make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
37005if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
37006 echo "missing ChimeraX application's python"; exit 1; \
37007else \
37008 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
37009fi
37010INFO:
37011Executing: devel build . exit true
37012C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
37013!!
37014
37015 ********************************************************************************
37016 Please consider removing the following classifiers in favor of a SPDX license expression:
37017
37018 License :: Free for non-commercial use
37019
37020 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
37021 ********************************************************************************
37022
37023!!
37024 self._finalize_license_expression()
37025running build
37026running build_py
37027creating build\lib\chimerax\vrml
37028copying src\vrml.py -> build\lib\chimerax\vrml
37029copying src\__init__.py -> build\lib\chimerax\vrml
37030running bdist_wheel
37031installing to build\bdist.win-amd64\wheel
37032running install
37033running install_lib
37034creating build\bdist.win-amd64\wheel
37035creating build\bdist.win-amd64\wheel\chimerax
37036creating build\bdist.win-amd64\wheel\chimerax\vrml
37037copying build\lib\chimerax\vrml\vrml.py -> build\bdist.win-amd64\wheel\.\chimerax\vrml
37038copying build\lib\chimerax\vrml\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\vrml
37039running install_egg_info
37040running egg_info
37041creating ChimeraX_vrml.egg-info
37042writing ChimeraX_vrml.egg-info\PKG-INFO
37043writing dependency_links to ChimeraX_vrml.egg-info\dependency_links.txt
37044writing requirements to ChimeraX_vrml.egg-info\requires.txt
37045writing top-level names to ChimeraX_vrml.egg-info\top_level.txt
37046writing manifest file 'ChimeraX_vrml.egg-info\SOURCES.txt'
37047reading manifest file 'ChimeraX_vrml.egg-info\SOURCES.txt'
37048writing manifest file 'ChimeraX_vrml.egg-info\SOURCES.txt'
37049Copying ChimeraX_vrml.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_vrml-1.0-py3.11.egg-info
37050running install_scripts
37051creating build\bdist.win-amd64\wheel\chimerax_vrml-1.0.dist-info\WHEEL
37052creating 'dist\chimerax_vrml-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
37053adding 'chimerax/vrml/__init__.py'
37054adding 'chimerax/vrml/vrml.py'
37055adding 'chimerax_vrml-1.0.dist-info/METADATA'
37056adding 'chimerax_vrml-1.0.dist-info/WHEEL'
37057adding 'chimerax_vrml-1.0.dist-info/top_level.txt'
37058adding 'chimerax_vrml-1.0.dist-info/RECORD'
37059removing build\bdist.win-amd64\wheel
37060Distribution is in .\dist\ChimeraX_vrml-1.0-py3-none-any.whl
37061INFO:
37062
37063make sync
37064make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
37065cp -av dist/*.whl ../../../build/sync
37066'dist/chimerax_vrml-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_vrml-1.0-py3-none-any.whl'
37067make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
37068make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vrml'
37069make -C vtk build
37070make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
37071if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
37072 echo "missing ChimeraX application's python"; exit 1; \
37073else \
37074 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
37075fi
37076INFO:
37077Executing: devel build . exit true
37078C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
37079!!
37080
37081 ********************************************************************************
37082 Please consider removing the following classifiers in favor of a SPDX license expression:
37083
37084 License :: Free for non-commercial use
37085
37086 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
37087 ********************************************************************************
37088
37089!!
37090 self._finalize_license_expression()
37091running build
37092running build_py
37093creating build\lib\chimerax\vtk
37094copying src\export_vtk.py -> build\lib\chimerax\vtk
37095copying src\vtk.py -> build\lib\chimerax\vtk
37096copying src\__init__.py -> build\lib\chimerax\vtk
37097running bdist_wheel
37098installing to build\bdist.win-amd64\wheel
37099running install
37100running install_lib
37101creating build\bdist.win-amd64\wheel
37102creating build\bdist.win-amd64\wheel\chimerax
37103creating build\bdist.win-amd64\wheel\chimerax\vtk
37104copying build\lib\chimerax\vtk\export_vtk.py -> build\bdist.win-amd64\wheel\.\chimerax\vtk
37105copying build\lib\chimerax\vtk\vtk.py -> build\bdist.win-amd64\wheel\.\chimerax\vtk
37106copying build\lib\chimerax\vtk\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\vtk
37107running install_egg_info
37108running egg_info
37109creating ChimeraX_VTK.egg-info
37110writing ChimeraX_VTK.egg-info\PKG-INFO
37111writing dependency_links to ChimeraX_VTK.egg-info\dependency_links.txt
37112writing requirements to ChimeraX_VTK.egg-info\requires.txt
37113writing top-level names to ChimeraX_VTK.egg-info\top_level.txt
37114writing manifest file 'ChimeraX_VTK.egg-info\SOURCES.txt'
37115reading manifest file 'ChimeraX_VTK.egg-info\SOURCES.txt'
37116writing manifest file 'ChimeraX_VTK.egg-info\SOURCES.txt'
37117Copying ChimeraX_VTK.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_VTK-1.0-py3.11.egg-info
37118running install_scripts
37119creating build\bdist.win-amd64\wheel\chimerax_vtk-1.0.dist-info\WHEEL
37120creating 'dist\chimerax_vtk-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
37121adding 'chimerax/vtk/__init__.py'
37122adding 'chimerax/vtk/export_vtk.py'
37123adding 'chimerax/vtk/vtk.py'
37124adding 'chimerax_vtk-1.0.dist-info/METADATA'
37125adding 'chimerax_vtk-1.0.dist-info/WHEEL'
37126adding 'chimerax_vtk-1.0.dist-info/top_level.txt'
37127adding 'chimerax_vtk-1.0.dist-info/RECORD'
37128removing build\bdist.win-amd64\wheel
37129Distribution is in .\dist\ChimeraX_VTK-1.0-py3-none-any.whl
37130INFO:
37131
37132make sync
37133make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
37134cp -av dist/*.whl ../../../build/sync
37135'dist/chimerax_vtk-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_vtk-1.0-py3-none-any.whl'
37136make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
37137make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/vtk'
37138make -C wavefront_obj build
37139make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
37140if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
37141 echo "missing ChimeraX application's python"; exit 1; \
37142else \
37143 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
37144fi
37145INFO:
37146Executing: devel build . exit true
37147C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
37148!!
37149
37150 ********************************************************************************
37151 Please consider removing the following classifiers in favor of a SPDX license expression:
37152
37153 License :: Free for non-commercial use
37154
37155 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
37156 ********************************************************************************
37157
37158!!
37159 self._finalize_license_expression()
37160running build
37161running build_py
37162creating build\lib\chimerax\wavefront_obj
37163copying src\obj.py -> build\lib\chimerax\wavefront_obj
37164copying src\__init__.py -> build\lib\chimerax\wavefront_obj
37165running bdist_wheel
37166installing to build\bdist.win-amd64\wheel
37167running install
37168running install_lib
37169creating build\bdist.win-amd64\wheel
37170creating build\bdist.win-amd64\wheel\chimerax
37171creating build\bdist.win-amd64\wheel\chimerax\wavefront_obj
37172copying build\lib\chimerax\wavefront_obj\obj.py -> build\bdist.win-amd64\wheel\.\chimerax\wavefront_obj
37173copying build\lib\chimerax\wavefront_obj\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\wavefront_obj
37174running install_egg_info
37175running egg_info
37176creating ChimeraX_WavefrontOBJ.egg-info
37177writing ChimeraX_WavefrontOBJ.egg-info\PKG-INFO
37178writing dependency_links to ChimeraX_WavefrontOBJ.egg-info\dependency_links.txt
37179writing requirements to ChimeraX_WavefrontOBJ.egg-info\requires.txt
37180writing top-level names to ChimeraX_WavefrontOBJ.egg-info\top_level.txt
37181writing manifest file 'ChimeraX_WavefrontOBJ.egg-info\SOURCES.txt'
37182reading manifest file 'ChimeraX_WavefrontOBJ.egg-info\SOURCES.txt'
37183writing manifest file 'ChimeraX_WavefrontOBJ.egg-info\SOURCES.txt'
37184Copying ChimeraX_WavefrontOBJ.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_WavefrontOBJ-1.0-py3.11.egg-info
37185running install_scripts
37186creating build\bdist.win-amd64\wheel\chimerax_wavefrontobj-1.0.dist-info\WHEEL
37187creating 'dist\chimerax_wavefrontobj-1.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
37188adding 'chimerax/wavefront_obj/__init__.py'
37189adding 'chimerax/wavefront_obj/obj.py'
37190adding 'chimerax_wavefrontobj-1.0.dist-info/METADATA'
37191adding 'chimerax_wavefrontobj-1.0.dist-info/WHEEL'
37192adding 'chimerax_wavefrontobj-1.0.dist-info/top_level.txt'
37193adding 'chimerax_wavefrontobj-1.0.dist-info/RECORD'
37194removing build\bdist.win-amd64\wheel
37195Distribution is in .\dist\ChimeraX_WavefrontOBJ-1.0-py3-none-any.whl
37196INFO:
37197
37198make sync
37199make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
37200cp -av dist/*.whl ../../../build/sync
37201'dist/chimerax_wavefrontobj-1.0-py3-none-any.whl' -> '../../../build/sync/chimerax_wavefrontobj-1.0-py3-none-any.whl'
37202make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
37203make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/wavefront_obj'
37204make -C webcam build
37205make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
37206if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
37207 echo "missing ChimeraX application's python"; exit 1; \
37208else \
37209 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
37210fi
37211INFO:
37212Executing: devel build . exit true
37213C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
37214!!
37215
37216 ********************************************************************************
37217 Please consider removing the following classifiers in favor of a SPDX license expression:
37218
37219 License :: Free for non-commercial use
37220
37221 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
37222 ********************************************************************************
37223
37224!!
37225 self._finalize_license_expression()
37226running build
37227running build_py
37228creating build\lib.win-amd64-cpython-311\chimerax\webcam
37229copying src\camera.py -> build\lib.win-amd64-cpython-311\chimerax\webcam
37230copying src\webcam.py -> build\lib.win-amd64-cpython-311\chimerax\webcam
37231copying src\webcam_cpp.py -> build\lib.win-amd64-cpython-311\chimerax\webcam
37232copying src\__init__.py -> build\lib.win-amd64-cpython-311\chimerax\webcam
37233running build_ext
37234building 'chimerax.webcam._webcam' extension
37235creating build\temp.win-amd64-cpython-311\Release\_webcam
37236"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DMAJOR_VERSION=0 -DMINOR_VERSION=1 -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\include -IC:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Include "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /EHsc /Tp_webcam/pixelformats.cpp /Fobuild\temp.win-amd64-cpython-311\Release\_webcam\pixelformats.obj
37237pixelformats.cpp
37238"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\core\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\chimerax\arrays\lib /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\libs /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin /LIBPATH:C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\atlmfc\lib\\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" libarrays.lib /EXPORT:PyInit__webcam build\temp.win-amd64-cpython-311\Release\_webcam\pixelformats.obj /OUT:build\lib.win-amd64-cpython-311\chimerax\webcam\_webcam.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\_webcam\_webcam.cp311-win_amd64.lib
37239 Creating library build\temp.win-amd64-cpython-311\Release\_webcam\_webcam.cp311-win_amd64.lib and object build\temp.win-amd64-cpython-311\Release\_webcam\_webcam.cp311-win_amd64.exp
37240Generating code
37241Finished generating code
37242running bdist_wheel
37243installing to build\bdist.win-amd64\wheel
37244running install
37245running install_lib
37246running build_ext
37247creating build\bdist.win-amd64\wheel
37248creating build\bdist.win-amd64\wheel\chimerax
37249creating build\bdist.win-amd64\wheel\chimerax\webcam
37250copying build\lib.win-amd64-cpython-311\chimerax\webcam\camera.py -> build\bdist.win-amd64\wheel\.\chimerax\webcam
37251copying build\lib.win-amd64-cpython-311\chimerax\webcam\webcam.py -> build\bdist.win-amd64\wheel\.\chimerax\webcam
37252copying build\lib.win-amd64-cpython-311\chimerax\webcam\webcam_cpp.py -> build\bdist.win-amd64\wheel\.\chimerax\webcam
37253copying build\lib.win-amd64-cpython-311\chimerax\webcam\_webcam.cp311-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\chimerax\webcam
37254copying build\lib.win-amd64-cpython-311\chimerax\webcam\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\webcam
37255running install_egg_info
37256running egg_info
37257creating ChimeraX_WebCam.egg-info
37258writing ChimeraX_WebCam.egg-info\PKG-INFO
37259writing dependency_links to ChimeraX_WebCam.egg-info\dependency_links.txt
37260writing requirements to ChimeraX_WebCam.egg-info\requires.txt
37261writing top-level names to ChimeraX_WebCam.egg-info\top_level.txt
37262writing manifest file 'ChimeraX_WebCam.egg-info\SOURCES.txt'
37263reading manifest file 'ChimeraX_WebCam.egg-info\SOURCES.txt'
37264writing manifest file 'ChimeraX_WebCam.egg-info\SOURCES.txt'
37265Copying ChimeraX_WebCam.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_WebCam-1.0.2-py3.11.egg-info
37266running install_scripts
37267C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\command\bdist_wheel.py:103: RuntimeWarning: Config variable 'Py_DEBUG' is unset, Python ABI tag may be incorrect
37268 if get_flag("Py_DEBUG", hasattr(sys, "gettotalrefcount"), warn=(impl == "cp")):
37269creating build\bdist.win-amd64\wheel\chimerax_webcam-1.0.2.dist-info\WHEEL
37270creating 'dist\chimerax_webcam-1.0.2-cp311-cp311-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
37271adding 'chimerax/webcam/__init__.py'
37272adding 'chimerax/webcam/_webcam.cp311-win_amd64.pyd'
37273adding 'chimerax/webcam/camera.py'
37274adding 'chimerax/webcam/webcam.py'
37275adding 'chimerax/webcam/webcam_cpp.py'
37276adding 'chimerax_webcam-1.0.2.dist-info/METADATA'
37277adding 'chimerax_webcam-1.0.2.dist-info/WHEEL'
37278adding 'chimerax_webcam-1.0.2.dist-info/top_level.txt'
37279adding 'chimerax_webcam-1.0.2.dist-info/RECORD'
37280removing build\bdist.win-amd64\wheel
37281Distribution is in .\dist\ChimeraX_WebCam-1.0.2-cp311-cp311-win_amd64.whl
37282INFO:
37283
37284make sync
37285make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
37286cp -av dist/*.whl ../../../build/sync
37287'dist/chimerax_webcam-1.0.2-cp311-cp311-win_amd64.whl' -> '../../../build/sync/chimerax_webcam-1.0.2-cp311-cp311-win_amd64.whl'
37288make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
37289make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webcam'
37290make -C webservices build
37291make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
37292if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
37293 echo "missing ChimeraX application's python"; exit 1; \
37294else \
37295 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
37296fi
37297INFO:
37298Executing: devel build . exit true
37299running build
37300running build_py
37301creating build\lib\chimerax\webservices
37302copying src\cxservices_job.py -> build\lib\chimerax\webservices
37303copying src\cxservices_utils.py -> build\lib\chimerax\webservices
37304copying src\httpq.py -> build\lib\chimerax\webservices
37305copying src\post_form.py -> build\lib\chimerax\webservices
37306copying src\__init__.py -> build\lib\chimerax\webservices
37307running bdist_wheel
37308installing to build\bdist.win-amd64\wheel
37309running install
37310running install_lib
37311creating build\bdist.win-amd64\wheel
37312creating build\bdist.win-amd64\wheel\chimerax
37313creating build\bdist.win-amd64\wheel\chimerax\webservices
37314copying build\lib\chimerax\webservices\cxservices_job.py -> build\bdist.win-amd64\wheel\.\chimerax\webservices
37315copying build\lib\chimerax\webservices\cxservices_utils.py -> build\bdist.win-amd64\wheel\.\chimerax\webservices
37316copying build\lib\chimerax\webservices\httpq.py -> build\bdist.win-amd64\wheel\.\chimerax\webservices
37317copying build\lib\chimerax\webservices\post_form.py -> build\bdist.win-amd64\wheel\.\chimerax\webservices
37318copying build\lib\chimerax\webservices\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\webservices
37319running install_egg_info
37320running egg_info
37321creating ChimeraX_WebServices.egg-info
37322writing ChimeraX_WebServices.egg-info\PKG-INFO
37323writing dependency_links to ChimeraX_WebServices.egg-info\dependency_links.txt
37324writing requirements to ChimeraX_WebServices.egg-info\requires.txt
37325writing top-level names to ChimeraX_WebServices.egg-info\top_level.txt
37326writing manifest file 'ChimeraX_WebServices.egg-info\SOURCES.txt'
37327reading manifest file 'ChimeraX_WebServices.egg-info\SOURCES.txt'
37328writing manifest file 'ChimeraX_WebServices.egg-info\SOURCES.txt'
37329Copying ChimeraX_WebServices.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_WebServices-1.1.5-py3.11.egg-info
37330running install_scripts
37331creating build\bdist.win-amd64\wheel\chimerax_webservices-1.1.5.dist-info\WHEEL
37332creating 'dist\chimerax_webservices-1.1.5-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
37333adding 'chimerax/webservices/__init__.py'
37334adding 'chimerax/webservices/cxservices_job.py'
37335adding 'chimerax/webservices/cxservices_utils.py'
37336adding 'chimerax/webservices/httpq.py'
37337adding 'chimerax/webservices/post_form.py'
37338adding 'chimerax_webservices-1.1.5.dist-info/METADATA'
37339adding 'chimerax_webservices-1.1.5.dist-info/WHEEL'
37340adding 'chimerax_webservices-1.1.5.dist-info/top_level.txt'
37341adding 'chimerax_webservices-1.1.5.dist-info/RECORD'
37342removing build\bdist.win-amd64\wheel
37343Distribution is in C:\cygwin64\home\goddard\ucsf\chimerax\src\bundles\webservices\dist\chimerax_webservices-1.1.5-py3-none-any.whl
37344INFO:
37345
37346make sync
37347make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
37348cp -av dist/*.whl ../../../build/sync
37349'dist/chimerax_webservices-1.1.5-py3-none-any.whl' -> '../../../build/sync/chimerax_webservices-1.1.5-py3-none-any.whl'
37350make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
37351make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/webservices'
37352make -C zone build
37353make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
37354if [ -z "../../../ChimeraX.app/bin/python.exe" ]; then \
37355 echo "missing ChimeraX application's python"; exit 1; \
37356else \
37357 PYTHONNOUSERSITE=1 ../../../ChimeraX.app/bin/python.exe -I -m chimerax.core --nogui --exit --safemode --cmd "devel build . exit true "; \
37358fi
37359INFO:
37360Executing: devel build . exit true
37361C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Lib\site-packages\setuptools\dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
37362!!
37363
37364 ********************************************************************************
37365 Please consider removing the following classifiers in favor of a SPDX license expression:
37366
37367 License :: Free for non-commercial use
37368
37369 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
37370 ********************************************************************************
37371
37372!!
37373 self._finalize_license_expression()
37374running build
37375running build_py
37376creating build\lib\chimerax\zone
37377copying src\zone.py -> build\lib\chimerax\zone
37378copying src\__init__.py -> build\lib\chimerax\zone
37379copying src\zone.png -> build\lib\chimerax\zone
37380running bdist_wheel
37381installing to build\bdist.win-amd64\wheel
37382running install
37383running install_lib
37384creating build\bdist.win-amd64\wheel
37385creating build\bdist.win-amd64\wheel\chimerax
37386creating build\bdist.win-amd64\wheel\chimerax\zone
37387copying build\lib\chimerax\zone\zone.png -> build\bdist.win-amd64\wheel\.\chimerax\zone
37388copying build\lib\chimerax\zone\zone.py -> build\bdist.win-amd64\wheel\.\chimerax\zone
37389copying build\lib\chimerax\zone\__init__.py -> build\bdist.win-amd64\wheel\.\chimerax\zone
37390running install_egg_info
37391running egg_info
37392creating ChimeraX_Zone.egg-info
37393writing ChimeraX_Zone.egg-info\PKG-INFO
37394writing dependency_links to ChimeraX_Zone.egg-info\dependency_links.txt
37395writing requirements to ChimeraX_Zone.egg-info\requires.txt
37396writing top-level names to ChimeraX_Zone.egg-info\top_level.txt
37397writing manifest file 'ChimeraX_Zone.egg-info\SOURCES.txt'
37398reading manifest file 'ChimeraX_Zone.egg-info\SOURCES.txt'
37399writing manifest file 'ChimeraX_Zone.egg-info\SOURCES.txt'
37400Copying ChimeraX_Zone.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_Zone-1.0.1-py3.11.egg-info
37401running install_scripts
37402creating build\bdist.win-amd64\wheel\chimerax_zone-1.0.1.dist-info\WHEEL
37403creating 'dist\chimerax_zone-1.0.1-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
37404adding 'chimerax/zone/__init__.py'
37405adding 'chimerax/zone/zone.png'
37406adding 'chimerax/zone/zone.py'
37407adding 'chimerax_zone-1.0.1.dist-info/METADATA'
37408adding 'chimerax_zone-1.0.1.dist-info/WHEEL'
37409adding 'chimerax_zone-1.0.1.dist-info/top_level.txt'
37410adding 'chimerax_zone-1.0.1.dist-info/RECORD'
37411removing build\bdist.win-amd64\wheel
37412Distribution is in .\dist\ChimeraX_Zone-1.0.1-py3-none-any.whl
37413INFO:
37414
37415make sync
37416make[6]: Entering directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
37417cp -av dist/*.whl ../../../build/sync
37418'dist/chimerax_zone-1.0.1-py3-none-any.whl' -> '../../../build/sync/chimerax_zone-1.0.1-py3-none-any.whl'
37419make[6]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
37420make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles/zone'
37421make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles'
37422cd /home/goddard/ucsf/chimerax/build/sync && /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install --upgrade --upgrade-strategy only-if-needed *.whl
37423Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_addcharge-1.5.20-py3-none-any.whl
37424Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_addh-2.2.7-py3-none-any.whl
37425Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_alignmentalgorithms-2.0.2-cp311-cp311-win_amd64.whl
37426Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_alignmenthdrs-3.6.1-cp311-cp311-win_amd64.whl
37427Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_alignmentmatrices-2.1-py3-none-any.whl
37428Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_alignments-3.0.2-py3-none-any.whl
37429Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_alphafold-1.0.1-py3-none-any.whl
37430Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_altlocexplorer-1.1.2-py3-none-any.whl
37431Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_amberinfo-1.0-py3-none-any.whl
37432Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_aniso-1.3.2-py3-none-any.whl
37433Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_arrays-1.1-cp311-cp311-win_amd64.whl
37434Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_atomic-1.60.17-cp311-cp311-win_amd64.whl
37435Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_atomiclibrary-14.2-cp311-cp311-win_amd64.whl
37436Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_atomsearch-2.0.1-cp311-cp311-win_amd64.whl
37437Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_axesplanes-2.4-py3-none-any.whl
37438Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_basicactions-1.1.3-py3-none-any.whl
37439Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_bild-1.0-py3-none-any.whl
37440Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_blastprotein-3.0.0-py3-none-any.whl
37441Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_boltz-1.1-py3-none-any.whl
37442Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_bondrot-2.0.4-py3-none-any.whl
37443Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_bugreporter-1.0.2-py3-none-any.whl
37444Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_buildstructure-2.13.1-py3-none-any.whl
37445Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_bumps-1.0-py3-none-any.whl
37446Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_bundlebuilder-1.6.0-py3-none-any.whl
37447Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_buttonpanel-1.0.1-py3-none-any.whl
37448Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_cagebuilder-1.0.1-py3-none-any.whl
37449Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_cellpack-1.0-py3-none-any.whl
37450Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_centroids-1.4-py3-none-any.whl
37451Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_changechains-1.1-py3-none-any.whl
37452Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_checkwaters-1.5-py3-none-any.whl
37453Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_chemgroup-2.0.2-cp311-cp311-win_amd64.whl
37454Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_clashes-2.3-py3-none-any.whl
37455Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_coloractions-1.0.5-py3-none-any.whl
37456Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_colorglobe-1.0-py3-none-any.whl
37457Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_colorkey-1.5.8-py3-none-any.whl
37458Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_commandline-1.3.0-py3-none-any.whl
37459Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_connectstructure-2.0.1-cp311-cp311-win_amd64.whl
37460Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_contacts-1.0.1-py3-none-any.whl
37461Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_core-1.11.dev202509231826-cp311-cp311-win_amd64.whl
37462Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_coreformats-1.2-py3-none-any.whl
37463Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_coulombic-1.4.5-cp311-cp311-win_amd64.whl
37464Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_crosslinks-1.0-py3-none-any.whl
37465Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_crystal-1.0-py3-none-any.whl
37466Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_crystalcontacts-1.0.1-py3-none-any.whl
37467Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_dataformats-1.2.4-py3-none-any.whl
37468Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_dicom-1.2.7-py3-none-any.whl
37469Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_distmonitor-1.4.2-py3-none-any.whl
37470Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_dockprep-1.1.4-py3-none-any.whl
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37596Processing c:\cygwin64\home\goddard\ucsf\chimerax\build\sync\chimerax_zone-1.0.1-py3-none-any.whl
37597Collecting sfftk-rw~=0.8.1 (from chimerax-emdb-sff==1.0)
37598 Using cached sfftk_rw-0.8.1-py3-none-any.whl.metadata (3.0 kB)
37599Collecting pynmrstar~=3.0 (from chimerax-nmrstar==1.0.2)
37600 Downloading pynmrstar-3.3.6-cp311-cp311-win_amd64.whl.metadata (2.7 kB)
37601Requirement already satisfied: qtconsole>=4.2.1 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from chimerax-shell==1.0.1) (5.7.0)
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37607Requirement already satisfied: certifi>=2017.4.17 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from requests<=3,>=2.21.0->pynmrstar~=3.0->chimerax-nmrstar==1.0.2) (2025.8.3)
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37610Requirement already satisfied: lxml in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from sfftk-rw~=0.8.1->chimerax-emdb-sff==1.0) (6.0.2)
37611Collecting h5py (from sfftk-rw~=0.8.1->chimerax-emdb-sff==1.0)
37612 Using cached h5py-3.14.0-cp311-cp311-win_amd64.whl.metadata (2.7 kB)
37613Collecting RandomWords (from sfftk-rw~=0.8.1->chimerax-emdb-sff==1.0)
37614 Using cached RandomWords-0.4.0-py3-none-any.whl
37615Requirement already satisfied: traitlets!=5.2.1,!=5.2.2 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from qtconsole>=4.2.1->chimerax-shell==1.0.1) (5.14.3)
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37617Requirement already satisfied: jupyter_client>=4.1 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from qtconsole>=4.2.1->chimerax-shell==1.0.1) (8.6.3)
37618Requirement already satisfied: pygments in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from qtconsole>=4.2.1->chimerax-shell==1.0.1) (2.18.0)
37619Requirement already satisfied: ipykernel>=4.1 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from qtconsole>=4.2.1->chimerax-shell==1.0.1) (6.30.1)
37620Requirement already satisfied: ipython_pygments_lexers in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from qtconsole>=4.2.1->chimerax-shell==1.0.1) (1.1.1)
37621Requirement already satisfied: qtpy>=2.4.0 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from qtconsole>=4.2.1->chimerax-shell==1.0.1) (2.4.3)
37622Requirement already satisfied: packaging in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from qtconsole>=4.2.1->chimerax-shell==1.0.1) (25.0)
37623Requirement already satisfied: comm>=0.1.1 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.2.3)
37624Requirement already satisfied: debugpy>=1.6.5 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (1.8.17)
37625Requirement already satisfied: ipython>=7.23.1 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (9.5.0)
37626Requirement already satisfied: matplotlib-inline>=0.1 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.1.7)
37627Requirement already satisfied: nest-asyncio>=1.4 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (1.6.0)
37628Requirement already satisfied: psutil>=5.7 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (7.0.0)
37629Requirement already satisfied: pyzmq>=25 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (27.1.0)
37630Requirement already satisfied: tornado>=6.2 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (6.5.2)
37631Requirement already satisfied: colorama in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.4.6)
37632Requirement already satisfied: decorator in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (5.2.1)
37633Requirement already satisfied: jedi>=0.16 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.19.2)
37634Requirement already satisfied: prompt_toolkit<3.1.0,>=3.0.41 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (3.0.52)
37635Requirement already satisfied: stack_data in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.6.3)
37636Requirement already satisfied: typing_extensions>=4.6 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (4.15.0)
37637Requirement already satisfied: wcwidth in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from prompt_toolkit<3.1.0,>=3.0.41->ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.2.14)
37638Requirement already satisfied: parso<0.9.0,>=0.8.4 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from jedi>=0.16->ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.8.5)
37639Requirement already satisfied: python-dateutil>=2.8.2 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from jupyter_client>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (2.9.0.post0)
37640Requirement already satisfied: platformdirs>=2.5 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from jupyter_core->qtconsole>=4.2.1->chimerax-shell==1.0.1) (4.4.0)
37641Requirement already satisfied: pywin32>=300 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from jupyter_core->qtconsole>=4.2.1->chimerax-shell==1.0.1) (311)
37642Requirement already satisfied: executing>=1.2.0 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from stack_data->ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (2.2.1)
37643Requirement already satisfied: asttokens>=2.1.0 in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from stack_data->ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (3.0.0)
37644Requirement already satisfied: pure-eval in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (from stack_data->ipython>=7.23.1->ipykernel>=4.1->qtconsole>=4.2.1->chimerax-shell==1.0.1) (0.2.3)
37645chimerax-arrays is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37646chimerax-atomiclibrary is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37647chimerax-core is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37648chimerax-geometry is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37649chimerax-graphics is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37650chimerax-pdblibrary is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37651chimerax-atomsearch is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37652chimerax-bundlebuilder is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37653chimerax-toolshedutils is already installed with the same version as the provided wheel. Use --force-reinstall to force an installation of the wheel.
37654Downloading pynmrstar-3.3.6-cp311-cp311-win_amd64.whl (411 kB)
37655Using cached sfftk_rw-0.8.1-py3-none-any.whl (315 kB)
37656Using cached h5py-3.14.0-cp311-cp311-win_amd64.whl (2.9 MB)
37657Installing collected packages: RandomWords, h5py, sfftk-rw, pynmrstar, chimerax-webservices, chimerax-umap, chimerax-toquest, chimerax-test, chimerax-smoothlines, chimerax-similarstructures, chimerax-segment, chimerax-schememgr, chimerax-rotamerlibmgr, chimerax-restserver, chimerax-remotecontrol, chimerax-presetmgr, chimerax-movie, chimerax-mcopy, chimerax-listinfo, chimerax-io, chimerax-boltz, chimerax-amberinfo, chimerax-struts, chimerax-spacenavigator, chimerax-shape, chimerax-rotamerlibsrichardson, chimerax-rotamerlibsdynameomics, chimerax-rotamerlibsdunbrack, chimerax-imod, chimerax-dssp, chimerax-crystal, chimerax-connectstructure, chimerax-webcam, chimerax-vive, chimerax-mousemodes, chimerax-lookingglass, chimerax-mapseries, chimerax-mapfilter, chimerax-mapfit, chimerax-map, chimerax-pdb, chimerax-mmcif, chimerax-itemsinspection, chimerax-distmonitor, chimerax-stdcommands, chimerax-selinspector, chimerax-savecommand, chimerax-opencommand, chimerax-ui, chimerax-surface, chimerax-dataformats, chimerax-chemgroup, chimerax-nucleotides, chimerax-mapdata, chimerax-hbonds, chimerax-clashes, chimerax-swapres, chimerax-bondrot, chimerax-atomic, chimerax-alignmentmatrices, chimerax-alignmentalgorithms, chimerax-addh, chimerax-sdf, chimerax-mol2, chimerax-label, chimerax-buildstructure, chimerax-axesplanes, chimerax-alignments, chimerax-alignmenthdrs, chimerax-addcharge, chimerax-zone, chimerax-tug, chimerax-structmeasure, chimerax-smiles, chimerax-shortcuts, chimerax-mdcrds, chimerax-markers, chimerax-help, chimerax-dockprep, chimerax-contacts, chimerax-colorkey, chimerax-alphafold, chimerax-wavefrontobj, chimerax-vtk, chimerax-vrml, chimerax-volumemenu, chimerax-viperdb, chimerax-viewdock, chimerax-unitcell, chimerax-uniprot, chimerax-topography, chimerax-toolbar, chimerax-taskmanager, chimerax-tapemeasure, chimerax-swapaa, chimerax-storm, chimerax-stl, chimerax-sideview, chimerax-showsequences, chimerax-shell, chimerax-seqview, chimerax-segmentations, chimerax-segger, chimerax-scenes, chimerax-rnalayout, chimerax-residuefit, chimerax-renumberresidues, chimerax-renderbyattr, chimerax-registration, chimerax-readpbonds, chimerax-pubchem, chimerax-profilegrids, chimerax-positions, chimerax-pickblobs, chimerax-pdbmatrices, chimerax-pdbbio, chimerax-orthopick, chimerax-nrrd, chimerax-nmrstar, chimerax-nifti, chimerax-neuron, chimerax-mutationscores, chimerax-morph, chimerax-mole, chimerax-modelseries, chimerax-modelpanel, chimerax-modeller, chimerax-modelarchive, chimerax-mmtf, chimerax-mlp, chimerax-minimize, chimerax-meeting, chimerax-medicaltoolbar, chimerax-matchmaker, chimerax-mask, chimerax-maperaser, chimerax-maestro, chimerax-log, chimerax-kvfinder, chimerax-iupac, chimerax-imageformats, chimerax-ihm, chimerax-hkcage, chimerax-gltf, chimerax-functionkey, chimerax-filehistory, chimerax-esmfold, chimerax-emdb-sff, chimerax-dicom, chimerax-crystalcontacts, chimerax-crosslinks, chimerax-coulombic, chimerax-coreformats, chimerax-commandline, chimerax-colorglobe, chimerax-coloractions, chimerax-checkwaters, chimerax-changechains, chimerax-centroids, chimerax-cellpack, chimerax-cagebuilder, chimerax-buttonpanel, chimerax-bumps, chimerax-bugreporter, chimerax-blastprotein, chimerax-bild, chimerax-basicactions, chimerax-aniso, chimerax-altlocexplorer
37658 WARNING: The script sff.exe is installed in 'C:\cygwin64\home\goddard\ucsf\chimerax\ChimeraX.app\bin\Scripts' which is not on PATH.
37659 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
37660
37661Successfully installed RandomWords-0.4.0 chimerax-addcharge-1.5.20 chimerax-addh-2.2.7 chimerax-alignmentalgorithms-2.0.2 chimerax-alignmenthdrs-3.6.1 chimerax-alignmentmatrices-2.1 chimerax-alignments-3.0.2 chimerax-alphafold-1.0.1 chimerax-altlocexplorer-1.1.2 chimerax-amberinfo-1.0 chimerax-aniso-1.3.2 chimerax-atomic-1.60.17 chimerax-axesplanes-2.4 chimerax-basicactions-1.1.3 chimerax-bild-1.0 chimerax-blastprotein-3.0.0 chimerax-boltz-1.1 chimerax-bondrot-2.0.4 chimerax-bugreporter-1.0.2 chimerax-buildstructure-2.13.1 chimerax-bumps-1.0 chimerax-buttonpanel-1.0.1 chimerax-cagebuilder-1.0.1 chimerax-cellpack-1.0 chimerax-centroids-1.4 chimerax-changechains-1.1 chimerax-checkwaters-1.5 chimerax-chemgroup-2.0.2 chimerax-clashes-2.3 chimerax-coloractions-1.0.5 chimerax-colorglobe-1.0 chimerax-colorkey-1.5.8 chimerax-commandline-1.3.0 chimerax-connectstructure-2.0.1 chimerax-contacts-1.0.1 chimerax-coreformats-1.2 chimerax-coulombic-1.4.5 chimerax-crosslinks-1.0 chimerax-crystal-1.0 chimerax-crystalcontacts-1.0.1 chimerax-dataformats-1.2.4 chimerax-dicom-1.2.7 chimerax-distmonitor-1.4.2 chimerax-dockprep-1.1.4 chimerax-dssp-2.0 chimerax-emdb-sff-1.0 chimerax-esmfold-1.0 chimerax-filehistory-1.0.1 chimerax-functionkey-1.0.1 chimerax-gltf-1.0 chimerax-hbonds-2.5.3 chimerax-help-1.3 chimerax-hkcage-1.3 chimerax-ihm-1.1 chimerax-imageformats-1.2 chimerax-imod-1.0 chimerax-io-1.0.4 chimerax-itemsinspection-1.0.1 chimerax-iupac-1.0 chimerax-kvfinder-1.7.1 chimerax-label-1.2 chimerax-listinfo-1.2.2 chimerax-log-1.2.1 chimerax-lookingglass-1.1 chimerax-maestro-1.9.2 chimerax-map-1.3 chimerax-mapdata-2.0 chimerax-maperaser-1.0.1 chimerax-mapfilter-2.0.1 chimerax-mapfit-2.0 chimerax-mapseries-2.1.1 chimerax-markers-1.0.1 chimerax-mask-1.0.2 chimerax-matchmaker-2.2.2 chimerax-mcopy-1.0 chimerax-mdcrds-2.17.1 chimerax-medicaltoolbar-1.1 chimerax-meeting-1.0.1 chimerax-minimize-1.2 chimerax-mlp-1.1.1 chimerax-mmcif-2.16 chimerax-mmtf-2.2 chimerax-modelarchive-1.0 chimerax-modeller-1.5.22 chimerax-modelpanel-1.6 chimerax-modelseries-1.0.1 chimerax-mol2-2.0.3 chimerax-mole-1.0 chimerax-morph-1.0.2 chimerax-mousemodes-1.2 chimerax-movie-1.0.1 chimerax-mutationscores-1.0 chimerax-neuron-1.0 chimerax-nifti-1.2 chimerax-nmrstar-1.0.2 chimerax-nrrd-1.2 chimerax-nucleotides-2.0.3 chimerax-opencommand-1.15.1 chimerax-orthopick-1.0.1 chimerax-pdb-2.7.11 chimerax-pdbbio-1.0.1 chimerax-pdbmatrices-1.0 chimerax-pickblobs-1.0.1 chimerax-positions-1.0 chimerax-presetmgr-1.1.3 chimerax-profilegrids-1.4 chimerax-pubchem-2.2 chimerax-readpbonds-1.0.1 chimerax-registration-1.1.2 chimerax-remotecontrol-1.0 chimerax-renderbyattr-1.6.5 chimerax-renumberresidues-1.1 chimerax-residuefit-1.0.1 chimerax-restserver-1.3.1 chimerax-rnalayout-1.0 chimerax-rotamerlibmgr-4.0 chimerax-rotamerlibsdunbrack-2.0 chimerax-rotamerlibsdynameomics-2.0 chimerax-rotamerlibsrichardson-2.0 chimerax-savecommand-1.5.2 chimerax-scenes-0.2.2 chimerax-schememgr-1.0 chimerax-sdf-2.0.3 chimerax-segger-1.0 chimerax-segment-1.0.1 chimerax-segmentations-3.5.7 chimerax-selinspector-1.0 chimerax-seqview-2.17.2 chimerax-shape-1.1 chimerax-shell-1.0.1 chimerax-shortcuts-1.2.1 chimerax-showsequences-1.0.3 chimerax-sideview-1.0.1 chimerax-similarstructures-1.0.1 chimerax-smiles-2.1.2 chimerax-smoothlines-1.0 chimerax-spacenavigator-1.0 chimerax-stdcommands-1.19.1 chimerax-stl-1.0.1 chimerax-storm-1.0 chimerax-structmeasure-1.2.1 chimerax-struts-1.0.1 chimerax-surface-1.0.1 chimerax-swapaa-2.0.1 chimerax-swapres-2.5.2 chimerax-tapemeasure-1.0 chimerax-taskmanager-1.0 chimerax-test-1.0 chimerax-toolbar-1.2.3 chimerax-topography-1.0 chimerax-toquest-1.0 chimerax-tug-1.0.1 chimerax-ui-1.48.3 chimerax-umap-1.0 chimerax-uniprot-2.3.1 chimerax-unitcell-1.0.1 chimerax-viewdock-1.4.2 chimerax-viperdb-1.0 chimerax-vive-1.1 chimerax-volumemenu-1.0.1 chimerax-vrml-1.0 chimerax-vtk-1.0 chimerax-wavefrontobj-1.0 chimerax-webcam-1.0.2 chimerax-webservices-1.1.5 chimerax-zone-1.0.1 h5py-3.14.0 pynmrstar-3.3.6 sfftk-rw-0.8.1
37662/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m chimerax.core --exit --nogui --silent --cmd "toolshed reload installed"
37663make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/bundles'
37664make -C apps install
37665make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/apps'
37666make -C ChimeraX install
37667make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
37668cl -nologo -EHa -GR -GF -MD -Ox -W2 -I'C:/cygwin64/home/goddard/ucsf/chimerax/build/include' -I'C:/cygwin64/home/goddard/ucsf/chimerax/build/include/python3.11' -c launcher.c
37669launcher.c
37670sed -e 's/YEAR/2025/' -e 's/CHIMERAX_VERSION/1.11.dev202509231826/' -e 's/CHIMERAX_PRODUCT/1,11,0,0/' -e 's/CHIMERAX_FLAGS/VS_FF_PRERELEASE/' < icon.rc.in > icon.rc || (rm icon.rc ; exit 1)
37671convert ChimeraX-icon512.png -resize 256x256 \
37672 -alpha Background -compress zip \
37673 -define icon:auto-resize=256,128,96,64,48,32,24,16 \
37674 ChimeraX.ico
37675rc -i . -Foicon.obj icon.rc
37676Microsoft (R) Windows (R) Resource Compiler Version 10.0.10011.16384
37677
37678Copyright (C) Microsoft Corporation. All rights reserved.
37679
37680
37681make real-install DESKTOP=1
37682make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
37683cl -nologo -EHa -GR -GF -MD -Ox -W2 -I'C:/cygwin64/home/goddard/ucsf/chimerax/build/include' -I'C:/cygwin64/home/goddard/ucsf/chimerax/build/include/python3.11' -c main_desktop.c
37684main_desktop.c
37685cl -nologo -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 -Ox -W2 -F2097152 -FeChimeraX.exe launcher.obj main_desktop.obj icon.obj -link -LIBPATH:'C:/cygwin64/home/goddard/ucsf/chimerax/build/lib' python311.lib; if [ -e ChimeraX.exe.manifest ]; then mt -nologo -manifest ChimeraX.exe.manifest -outputresource:ChimeraX.exe\;1 ; fi
37686 Creating library ChimeraX.lib and object ChimeraX.exp
37687/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ChimeraX.exe /home/goddard/ucsf/chimerax/build/bin
37688sending incremental file list
37689ChimeraX.exe
37690
37691sent 189,060 bytes received 35 bytes 378,190.00 bytes/sec
37692total size is 188,928 speedup is 1.00
37693if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app" ]; then \
37694 /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ChimeraX.exe /home/goddard/ucsf/chimerax/ChimeraX.app/bin; \
37695fi
37696sending incremental file list
37697ChimeraX.exe
37698
37699sent 189,060 bytes received 35 bytes 378,190.00 bytes/sec
37700total size is 188,928 speedup is 1.00
37701make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
37702make real-install DESKTOP=0
37703make[5]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
37704cl -nologo -EHa -GR -GF -MD -Ox -W2 -I'C:/cygwin64/home/goddard/ucsf/chimerax/build/include' -I'C:/cygwin64/home/goddard/ucsf/chimerax/build/include/python3.11' -c main_console.c
37705main_console.c
37706cl -nologo -EHa -GR -GF -MD -Zc:inline,rvalueCast,strictStrings -wd4251 -Ox -W2 -F2097152 -FeChimeraX-console.exe launcher.obj main_console.obj icon.obj -link -LIBPATH:'C:/cygwin64/home/goddard/ucsf/chimerax/build/lib' python311.lib; if [ -e ChimeraX-console.exe.manifest ]; then mt -nologo -manifest ChimeraX-console.exe.manifest -outputresource:ChimeraX-console.exe\;1 ; fi
37707 Creating library ChimeraX-console.lib and object ChimeraX-console.exp
37708/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ChimeraX-console.exe /home/goddard/ucsf/chimerax/build/bin
37709sending incremental file list
37710ChimeraX-console.exe
37711
37712sent 189,069 bytes received 35 bytes 378,208.00 bytes/sec
37713total size is 188,928 speedup is 1.00
37714if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app" ]; then \
37715 /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ChimeraX-console.exe /home/goddard/ucsf/chimerax/ChimeraX.app/bin; \
37716fi
37717sending incremental file list
37718ChimeraX-console.exe
37719
37720sent 189,069 bytes received 35 bytes 378,208.00 bytes/sec
37721total size is 188,928 speedup is 1.00
37722make[5]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
37723/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ChimeraX-icon.svg ChimeraX-icon512.png ChimeraX.ico /home/goddard/ucsf/chimerax/build/bin/share
37724sending incremental file list
37725ChimeraX-icon.svg
37726ChimeraX-icon512.png
37727ChimeraX.ico
37728
37729sent 252,153 bytes received 73 bytes 504,452.00 bytes/sec
37730total size is 251,877 speedup is 1.00
37731if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app" ]; then \
37732 /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv ChimeraX-icon.svg ChimeraX-icon512.png ChimeraX.ico /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share; \
37733fi
37734sending incremental file list
37735ChimeraX-icon.svg
37736ChimeraX-icon512.png
37737ChimeraX.ico
37738
37739sent 252,153 bytes received 73 bytes 504,452.00 bytes/sec
37740total size is 251,877 speedup is 1.00
37741make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/ChimeraX'
37742make -C structcomp install
37743make[4]: Entering directory '/home/goddard/ucsf/chimerax/src/apps/structcomp'
37744sed -e 's,APP_NAME,ChimeraX,' \
37745 -e 's,OS_BIN,bin,' \
37746 -e 's,MOD_NAME,structcomp,' \
37747 < ../moduleapp/mod_app.sh.in > structcomp.sh
37748chmod +x structcomp.sh
37749SUFFIX=""; \
37750if [ ! -d structcomp ]; then \
37751 SUFFIX=".py"; \
37752fi; \
37753if [ -f structcomp$SUFFIX ]; then \
37754 /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv structcomp$SUFFIX /home/goddard/ucsf/chimerax/build/bin/Lib/site-packages/chimerax; \
37755fi; \
37756/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv structcomp.sh /home/goddard/ucsf/chimerax/build/bin/structcomp; \
37757if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app" ]; then \
37758 if [ -f structcomp$SUFFIX ]; then \
37759 /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv structcomp$SUFFIX /home/goddard/ucsf/chimerax/ChimeraX.app/bin/Lib/site-packages/chimerax; \
37760 fi; \
37761 /home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv structcomp.sh /home/goddard/ucsf/chimerax/ChimeraX.app/bin/structcomp; \
37762fi
37763sending incremental file list
37764structcomp.py
37765
37766sent 15,619 bytes received 35 bytes 31,308.00 bytes/sec
37767total size is 15,521 speedup is 0.99
37768sending incremental file list
37769structcomp.sh
37770
37771sent 1,856 bytes received 35 bytes 3,782.00 bytes/sec
37772total size is 1,758 speedup is 0.93
37773sending incremental file list
37774structcomp.py
37775
37776sent 15,619 bytes received 35 bytes 31,308.00 bytes/sec
37777total size is 15,521 speedup is 0.99
37778sending incremental file list
37779structcomp.sh
37780
37781sent 1,856 bytes received 35 bytes 3,782.00 bytes/sec
37782total size is 1,758 speedup is 0.93
37783make[4]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps/structcomp'
37784make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/apps'
37785make -C examples install
37786make[3]: Entering directory '/home/goddard/ucsf/chimerax/src/examples'
37787make[3]: Nothing to be done for 'install'.
37788make[3]: Leaving directory '/home/goddard/ucsf/chimerax/src/examples'
37789make[2]: Leaving directory '/home/goddard/ucsf/chimerax/src'
37790make -C docs install
37791make[2]: Entering directory '/home/goddard/ucsf/chimerax/docs'
37792/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -c 'from importlib.metadata import entry_points; (ep,*_) = entry_points(name="rst2html5"); main = ep.load(); main()' \
37793 --no-xml-declaration \
37794 --smart-quotes=alt \
37795 --stylesheet-path=license.css \
37796 license.rst \
37797 | sed -e 's/\o342\o200\o234/\&ldquo;/g' \
37798 -e 's/\o342\o200\o235/\&rdquo;/g' \
37799 -e "s/\o342\o200\o231/'/g" \
37800 > license.html || (rm license.html ; exit 1)
37801/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip install html2text
37802Requirement already satisfied: html2text in c:\cygwin64\home\goddard\ucsf\chimerax\chimerax.app\bin\lib\site-packages (2025.4.15)
37803/home/goddard/ucsf/chimerax/ChimeraX.app/bin/Scripts/html2text.exe --body-width=0 license.html > license.txt
37804if [ -d "/home/goddard/ucsf/chimerax/ChimeraX.app" ]; then \
37805 /home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I make_embedded.py openmm ffmpeg; \
37806fi
37807cp -p *-license.txt licenses
37808make -C devel install
37809make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/devel'
37810rm -rf _build/* conf.py index.rst _static/cxlinks.js __pycache__ _static/devdocs.css \
37811 apps chimerax modules
37812sed -e 's/PYTHON_VERSION/3.11/' \
37813 -e 's/CHIMERAX_VERSION/1.11/' \
37814 -e 's/CHX_FULL_VERSION/1.11/' \
37815 < conf.py.in > conf.py
37816sed '/===/d' /home/goddard/ucsf/chimerax/copyright.txt | \
37817 sed $'/COPYRIGHT_NOTICE/{r /dev/stdin\nd\n}' \
37818 index.rst.in > index.rst
37819mkdir -p _static
37820cp ../js/cxlinks.js _static/cxlinks.js
37821cp ../css/devdocs.css _static/devdocs.css
37822# This code path handles a built ChimeraX, for the Plato build
37823# system or on a user's local machine. On readthedocs, the
37824# symlinks are made in Makefile.readthedocs
37825if [ -d /home/goddard/ucsf/chimerax/ChimeraX.app/bin/Lib/site-packages ]; then \
37826 ln -s /home/goddard/ucsf/chimerax/ChimeraX.app/bin/Lib/site-packages/chimerax chimerax ; \
37827 INTERNAL_CHIMERAX=1 /home/goddard/ucsf/chimerax/utils/build/doc_symlinks.sh ; \
37828fi
37829/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I 'C:/cygwin64/home/goddard/ucsf/chimerax/ChimeraX.app/bin/Scripts/sphinx-build.exe' -b html -d _build/doctrees . _build/html
37830[01mRunning Sphinx v8.2.3[39;49;00m
37831[01mloading translations [en]... [39;49;00mdone
37832[01mmaking output directory... [39;49;00mdone
37833Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
37834loading intersphinx inventory 'matplotlib' from https://matplotlib.org/stable/objects.inv ...
37835loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ...
37836loading intersphinx inventory 'python' from https://docs.python.org/3.11/objects.inv ...
37837loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ...
37838loading intersphinx inventory 'sphinx' from https://www.sphinx-doc.org/en/master/objects.inv ...
37839loading intersphinx inventory 'setuptools' from https://setuptools.pypa.io/en/latest/objects.inv ...
37840loading intersphinx inventory 'pillow' from https://pillow.readthedocs.io/en/latest/objects.inv ...
37841[autosummary] generating autosummary for: applications.rst, building.rst, bundles.rst, classes.rst, command_style.rst, conventions.rst, core.rst, cpplibs.rst, data_interface.rst, dependencies.rst, ..., tutorials\tutorial_presets.rst, tutorials\tutorial_read_format.rst, tutorials\tutorial_save_format.rst, tutorials\tutorial_selector.rst, tutorials\tutorial_tool.rst, tutorials\tutorial_tool_html.rst, tutorials\tutorial_tool_qt.rst, user_interface.rst, well_known_triggers.rst, writing_bundles.rst
37842[01mbuilding [mo]: [39;49;00mtargets for 0 po files that are out of date
37843[01mwriting output... [39;49;00m
37844[01mbuilding [html]: [39;49;00mtargets for 35 source files that are out of date
37845[01mupdating environment: [39;49;00m[new config] 35 added, 0 changed, 0 removed
37846[2K[01mreading sources... [39;49;00m[ 3%] [35mapplications[39;49;00m
37847[2K[01mreading sources... [39;49;00m[ 6%] [35mbuilding[39;49;00m
37848[2K[01mreading sources... [39;49;00m[ 9%] [35mbundles[39;49;00m
37849[2K[01mreading sources... [39;49;00m[ 11%] [35mclasses[39;49;00m
37850[2K[01mreading sources... [39;49;00m[ 14%] [35mcommand_style[39;49;00m
37851[2K[01mreading sources... [39;49;00m[ 17%] [35mconventions[39;49;00m
37852[2K[01mreading sources... [39;49;00m[ 20%] [35mcore[39;49;00m
37853[2K[01mreading sources... [39;49;00m[ 23%] [35mcpplibs[39;49;00m
37854[2K[01mreading sources... [39;49;00m[ 26%] [35mdata_interface[39;49;00m
37855[2K[01mreading sources... [39;49;00m[ 29%] [35mdependencies[39;49;00m
37856[2K[01mreading sources... [39;49;00m[ 31%] [35menvironment[39;49;00m
37857[2K[01mreading sources... [39;49;00m[ 34%] [35mgetcode[39;49;00m
37858[2K[01mreading sources... [39;49;00m[ 37%] [35mides_debugging_profiling[39;49;00m
37859[2K[01mreading sources... [39;49;00m[ 40%] [35mindex[39;49;00m
37860[2K[01mreading sources... [39;49;00m[ 43%] [35minfrastructure[39;49;00m
37861[2K[01mreading sources... [39;49;00m[ 46%] [35mmodules[39;49;00m
37862[2K[01mreading sources... [39;49;00m[ 49%] [35mprereqs[39;49;00m
37863[2K[01mreading sources... [39;49;00m[ 51%] [35msupported_api[39;49;00m
37864[2K[01mreading sources... [39;49;00m[ 54%] [35mtesting/main[39;49;00m
37865[2K[01mreading sources... [39;49;00m[ 57%] [35mtutorials/bundle_info[39;49;00m
37866[2K[01mreading sources... [39;49;00m[ 60%] [35mtutorials/introduction[39;49;00m
37867[2K[01mreading sources... [39;49;00m[ 63%] [35mtutorials/pyproject[39;49;00m
37868[2K[01mreading sources... [39;49;00m[ 66%] [35mtutorials/tutorial_command[39;49;00m
37869[2K[01mreading sources... [39;49;00m[ 69%] [35mtutorials/tutorial_fetch[39;49;00m
37870[2K[01mreading sources... [39;49;00m[ 71%] [35mtutorials/tutorial_hello[39;49;00m
37871[2K[01mreading sources... [39;49;00m[ 74%] [35mtutorials/tutorial_presets[39;49;00m
37872[2K[01mreading sources... [39;49;00m[ 77%] [35mtutorials/tutorial_read_format[39;49;00m
37873[2K[01mreading sources... [39;49;00m[ 80%] [35mtutorials/tutorial_save_format[39;49;00m
37874[2K[01mreading sources... [39;49;00m[ 83%] [35mtutorials/tutorial_selector[39;49;00m
37875[2K[01mreading sources... [39;49;00m[ 86%] [35mtutorials/tutorial_tool[39;49;00m
37876[2K[01mreading sources... [39;49;00m[ 89%] [35mtutorials/tutorial_tool_html[39;49;00m
37877[2K[01mreading sources... [39;49;00m[ 91%] [35mtutorials/tutorial_tool_qt[39;49;00m
37878[2K[01mreading sources... [39;49;00m[ 94%] [35muser_interface[39;49;00m
37879[2K[01mreading sources... [39;49;00m[ 97%] [35mwell_known_triggers[39;49;00m
37880[2K[01mreading sources... [39;49;00m[100%] [35mwriting_bundles[39;49;00m
37881
37882[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\applications.rst:29: WARNING: toctree contains reference to nonexisting document 'apps/ChimeraX/ChimeraX' [toc.not_readable][39;49;00m
37883[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\applications.rst:29: WARNING: toctree contains reference to nonexisting document 'apps/moduleapp/moduleapp' [toc.not_readable][39;49;00m
37884[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:43: WARNING: toctree contains reference to nonexisting document 'modules/core/commands/commands' [toc.not_readable][39;49;00m
37885[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:43: WARNING: toctree contains reference to nonexisting document 'modules/core/data_events' [toc.not_readable][39;49;00m
37886[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:43: WARNING: toctree contains reference to nonexisting document 'modules/core/objects' [toc.not_readable][39;49;00m
37887[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:43: WARNING: toctree contains reference to nonexisting document 'modules/core/session' [toc.not_readable][39;49;00m
37888[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:43: WARNING: toctree contains reference to nonexisting document 'modules/core/triggerset' [toc.not_readable][39;49;00m
37889[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:43: WARNING: toctree contains reference to nonexisting document 'modules/core/scripting' [toc.not_readable][39;49;00m
37890[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:61: WARNING: toctree contains reference to nonexisting document 'modules/mmcif/mmcif' [toc.not_readable][39;49;00m
37891[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:61: WARNING: toctree contains reference to nonexisting document 'modules/atomic/pdbio' [toc.not_readable][39;49;00m
37892[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:71: WARNING: toctree contains reference to nonexisting document 'modules/geometry/geometry' [toc.not_readable][39;49;00m
37893[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:71: WARNING: toctree contains reference to nonexisting document 'modules/graphics/graphics' [toc.not_readable][39;49;00m
37894[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\index.rst:42: WARNING: toctree contains reference to nonexisting document 'apps/ChimeraX/ChimeraX' [toc.not_readable][39;49;00m
37895[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\index.rst:58: WARNING: toctree contains reference to nonexisting document 'modules/core/commands/user_commands' [toc.not_readable][39;49;00m
37896[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/tools' [toc.not_readable][39;49;00m
37897[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/toolshed' [toc.not_readable][39;49;00m
37898[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/tasks' [toc.not_readable][39;49;00m
37899[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/logger' [toc.not_readable][39;49;00m
37900[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/history' [toc.not_readable][39;49;00m
37901[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/safesave' [toc.not_readable][39;49;00m
37902[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/serialize' [toc.not_readable][39;49;00m
37903[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/orderedset' [toc.not_readable][39;49;00m
37904[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/utils' [toc.not_readable][39;49;00m
37905[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\infrastructure.rst:24: WARNING: toctree contains reference to nonexisting document 'modules/core/configfile' [toc.not_readable][39;49;00m
37906[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:23: WARNING: toctree contains reference to nonexisting document 'modules/atomic/atomic' [toc.not_readable][39;49;00m
37907[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:23: WARNING: toctree contains reference to nonexisting document 'modules/mmcif/mmcif' [toc.not_readable][39;49;00m
37908[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:23: WARNING: toctree contains reference to nonexisting document 'modules/atomic/pdbio' [toc.not_readable][39;49;00m
37909[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:39: WARNING: toctree contains reference to nonexisting document 'modules/core/commands/commands' [toc.not_readable][39;49;00m
37910[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:39: WARNING: toctree contains reference to nonexisting document 'modules/core/tools' [toc.not_readable][39;49;00m
37911[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:39: WARNING: toctree contains reference to nonexisting document 'modules/core/toolshed' [toc.not_readable][39;49;00m
37912[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:50: WARNING: toctree contains reference to nonexisting document 'modules/core/models' [toc.not_readable][39;49;00m
37913[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:50: WARNING: toctree contains reference to nonexisting document 'modules/core/objects' [toc.not_readable][39;49;00m
37914[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:50: WARNING: toctree contains reference to nonexisting document 'modules/core/session' [toc.not_readable][39;49;00m
37915[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:61: WARNING: toctree contains reference to nonexisting document 'modules/core/fetch' [toc.not_readable][39;49;00m
37916[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:61: WARNING: toctree contains reference to nonexisting document 'modules/core/history' [toc.not_readable][39;49;00m
37917[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:61: WARNING: toctree contains reference to nonexisting document 'modules/core/safesave' [toc.not_readable][39;49;00m
37918[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:61: WARNING: toctree contains reference to nonexisting document 'modules/core/serialize' [toc.not_readable][39;49;00m
37919[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:61: WARNING: toctree contains reference to nonexisting document 'modules/core/settings' [toc.not_readable][39;49;00m
37920[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:76: WARNING: toctree contains reference to nonexisting document 'modules/core/data_events' [toc.not_readable][39;49;00m
37921[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:76: WARNING: toctree contains reference to nonexisting document 'modules/core/logger' [toc.not_readable][39;49;00m
37922[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:76: WARNING: toctree contains reference to nonexisting document 'modules/core/tasks' [toc.not_readable][39;49;00m
37923[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:76: WARNING: toctree contains reference to nonexisting document 'modules/core/triggerset' [toc.not_readable][39;49;00m
37924[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:89: WARNING: toctree contains reference to nonexisting document 'modules/core/orderedset' [toc.not_readable][39;49;00m
37925[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:89: WARNING: toctree contains reference to nonexisting document 'modules/core/utils' [toc.not_readable][39;49;00m
37926[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:99: WARNING: toctree contains reference to nonexisting document 'modules/io/io' [toc.not_readable][39;49;00m
37927[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:107: WARNING: toctree contains reference to nonexisting document 'modules/geometry/geometry' [toc.not_readable][39;49;00m
37928[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:116: WARNING: toctree contains reference to nonexisting document 'modules/graphics/graphics' [toc.not_readable][39;49;00m
37929[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:124: WARNING: toctree contains reference to nonexisting document 'modules/open_command/open' [toc.not_readable][39;49;00m
37930[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:124: WARNING: toctree contains reference to nonexisting document 'modules/save_command/save' [toc.not_readable][39;49;00m
37931[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:135: WARNING: toctree contains reference to nonexisting document 'modules/surface/surface' [toc.not_readable][39;49;00m
37932[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:144: WARNING: toctree contains reference to nonexisting document 'modules/ui/gui' [toc.not_readable][39;49;00m
37933[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:144: WARNING: toctree contains reference to nonexisting document 'modules/scheme_mgr/scheme_mgr' [toc.not_readable][39;49;00m
37934[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:144: WARNING: toctree contains reference to nonexisting document 'modules/toolbar/toolbar' [toc.not_readable][39;49;00m
37935[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:156: WARNING: toctree contains reference to nonexisting document 'modules/map/map' [toc.not_readable][39;49;00m
37936[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:156: WARNING: toctree contains reference to nonexisting document 'modules/map_fit/fitmap' [toc.not_readable][39;49;00m
37937[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\modules.rst:156: WARNING: toctree contains reference to nonexisting document 'modules/segment/segment' [toc.not_readable][39;49;00m
37938[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\user_interface.rst:28: WARNING: toctree contains reference to nonexisting document 'modules/core/commands/commands' [toc.not_readable][39;49;00m
37939[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\user_interface.rst:28: WARNING: toctree contains reference to nonexisting document 'modules/ui/gui' [toc.not_readable][39;49;00m
37940[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\user_interface.rst:28: WARNING: toctree contains reference to nonexisting document 'modules/core/settings' [toc.not_readable][39;49;00m
37941[01mlooking for now-outdated files... [39;49;00mnone found
37942[01mpickling environment... [39;49;00mdone
37943[01mchecking consistency... [39;49;00mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\conventions.rst: document is referenced in multiple toctrees: ['core', 'index'], selecting: index <- conventions
37944done
37945[01mpreparing documents... [39;49;00mdone
37946[01mcopying assets... [39;49;00m
37947[01mcopying static files... [39;49;00m
37948Writing evaluated template result to C:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\_build\html\_static\basic.css
37949Writing evaluated template result to C:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\_build\html\_static\documentation_options.js
37950Writing evaluated template result to C:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\_build\html\_static\language_data.js
37951Writing evaluated template result to C:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\_build\html\_static\classic.css
37952Writing evaluated template result to C:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\_build\html\_static\sidebar.js
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37976[2K[01mwriting output... [39;49;00m[ 57%] [32mtutorials/bundle_info[39;49;00m
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37991[2K[01mwriting output... [39;49;00m[100%] [32mwriting_bundles[39;49;00m
37992
37993[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\core.rst:20: WARNING: unknown document: 'modules/core/tools' [ref.doc][39;49;00m
37994[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:21: WARNING: unknown document: 'modules/atomic/atomic' [ref.doc][39;49;00m
37995[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\data_interface.rst:32: WARNING: unknown document: 'modules/core/triggerset' [ref.doc][39;49;00m
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37997[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\index.rst:78: WARNING: unknown document: 'license' [ref.doc][39;49;00m
37998[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\tutorials\bundle_info.rst:881: WARNING: undefined label: 'type annotations' [ref.ref][39;49;00m
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38000[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\tutorials\bundle_info.rst:1065: WARNING: undefined label: 'type annotations' [ref.ref][39;49;00m
38001[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\tutorials\tutorial_fetch.rst:151: WARNING: undefined label: 'type annotations' [ref.ref][39;49;00m
38002[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\tutorials\tutorial_read_format.rst:150: WARNING: undefined label: 'type annotations' [ref.ref][39;49;00m
38003[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\tutorials\tutorial_save_format.rst:167: WARNING: undefined label: 'type annotations' [ref.ref][39;49;00m
38004[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\tutorials\tutorial_tool_qt.rst:346: WARNING: undefined label: 'option_widgets' [ref.ref][39;49;00m
38005[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\tutorials\tutorial_tool_qt.rst:354: WARNING: undefined label: 'python_data_tables' [ref.ref][39;49;00m
38006[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\well_known_triggers.rst:20: WARNING: unknown document: 'modules/core/triggerset' [ref.doc][39;49;00m
38007[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\well_known_triggers.rst:62: WARNING: unknown document: 'modules/atomic/atomic' [ref.doc][39;49;00m
38008[91mC:\cygwin64\home\goddard\ucsf\chimerax\docs\devel\well_known_triggers.rst:233: WARNING: unknown document: 'modules/core/settings' [ref.doc][39;49;00m
38009[01mgenerating indices... [39;49;00mgenindex done
38010[01mwriting additional pages... [39;49;00msearch done
38011[01mdumping search index in English (code: en)... [39;49;00mdone
38012[01mdumping object inventory... [39;49;00mdone
38013[01mbuild succeeded, 75 warnings.[39;49;00m
38014
38015The HTML pages are in _build\html.
38016
38017Build finished. The HTML pages are in _build/html.
38018if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/devel" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/devel; fi
38019/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv _build/html/ /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/devel
38020sending incremental file list
38021.buildinfo
38022applications.html
38023building.html
38024bundles.html
38025classes.html
38026command_style.html
38027conventions.html
38028core.html
38029cpplibs.html
38030data_interface.html
38031dependencies.html
38032environment.html
38033genindex.html
38034getcode.html
38035ides_debugging_profiling.html
38036index.html
38037infrastructure.html
38038modules.html
38039objects.inv
38040prereqs.html
38041search.html
38042searchindex.js
38043supported_api.html
38044user_interface.html
38045well_known_triggers.html
38046writing_bundles.html
38047_sources/
38048_sources/applications.rst.txt
38049_sources/building.rst.txt
38050_sources/bundles.rst.txt
38051_sources/classes.rst.txt
38052_sources/command_style.rst.txt
38053_sources/conventions.rst.txt
38054_sources/core.rst.txt
38055_sources/cpplibs.rst.txt
38056_sources/data_interface.rst.txt
38057_sources/dependencies.rst.txt
38058_sources/environment.rst.txt
38059_sources/getcode.rst.txt
38060_sources/ides_debugging_profiling.rst.txt
38061_sources/index.rst.txt
38062_sources/infrastructure.rst.txt
38063_sources/modules.rst.txt
38064_sources/prereqs.rst.txt
38065_sources/supported_api.rst.txt
38066_sources/user_interface.rst.txt
38067_sources/well_known_triggers.rst.txt
38068_sources/writing_bundles.rst.txt
38069_sources/testing/
38070_sources/testing/main.rst.txt
38071_sources/tutorials/
38072_sources/tutorials/bundle_info.rst.txt
38073_sources/tutorials/introduction.rst.txt
38074_sources/tutorials/pyproject.rst.txt
38075_sources/tutorials/tutorial_command.rst.txt
38076_sources/tutorials/tutorial_fetch.rst.txt
38077_sources/tutorials/tutorial_hello.rst.txt
38078_sources/tutorials/tutorial_presets.rst.txt
38079_sources/tutorials/tutorial_read_format.rst.txt
38080_sources/tutorials/tutorial_save_format.rst.txt
38081_sources/tutorials/tutorial_selector.rst.txt
38082_sources/tutorials/tutorial_tool.rst.txt
38083_sources/tutorials/tutorial_tool_html.rst.txt
38084_sources/tutorials/tutorial_tool_qt.rst.txt
38085_static/
38086_static/ChimeraX-icon.svg
38087_static/basic.css
38088_static/classic.css
38089_static/cxlinks.js
38090_static/devdocs.css
38091_static/doctools.js
38092_static/documentation_options.js
38093_static/file.png
38094_static/language_data.js
38095_static/minus.png
38096_static/plus.png
38097_static/pygments.css
38098_static/searchtools.js
38099_static/sidebar.js
38100_static/sphinx_highlight.js
38101testing/
38102testing/main.html
38103tutorials/
38104tutorials/bundle_info.html
38105tutorials/introduction.html
38106tutorials/pyproject.html
38107tutorials/tutorial_command.html
38108tutorials/tutorial_fetch.html
38109tutorials/tutorial_hello.html
38110tutorials/tutorial_presets.html
38111tutorials/tutorial_read_format.html
38112tutorials/tutorial_save_format.html
38113tutorials/tutorial_selector.html
38114tutorials/tutorial_tool.html
38115tutorials/tutorial_tool_html.html
38116tutorials/tutorial_tool_qt.html
38117
38118sent 1,448,384 bytes received 1,770 bytes 966,769.33 bytes/sec
38119total size is 1,441,507 speedup is 0.99
38120make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/devel'
38121make -C pdbimages install
38122make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/pdbimages'
38123if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/pdbimages" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/pdbimages; fi
38124/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv index.html tiled.jpg /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/pdbimages
38125sending incremental file list
38126index.html
38127tiled.jpg
38128
38129sent 113,166 bytes received 54 bytes 226,440.00 bytes/sec
38130total size is 112,984 speedup is 1.00
38131make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/pdbimages'
38132make -C quickstart install
38133make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/quickstart'
38134if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/quickstart" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/quickstart; fi
38135/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv index.html images /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/quickstart
38136sending incremental file list
38137index.html
38138images/
38139images/1a0m.png
38140images/1grl.png
38141images/assembly.png
38142images/assembly3.png
38143images/chimerax.png
38144images/color.png
38145images/colorchain.png
38146images/contacts.png
38147images/eds_1a0m.png
38148images/emdb1080.png
38149images/emdb1273.png
38150images/enclose.png
38151images/fitmap.png
38152images/flat.png
38153images/grayscale.png
38154images/handfit.png
38155images/level.png
38156images/lightfull.png
38157images/litmap.png
38158images/molmap.png
38159images/mouselevel.png
38160images/open.png
38161images/pentamer.png
38162images/ribbon.png
38163images/ribbons.png
38164images/select.png
38165images/shift.png
38166images/spin.mp4
38167images/spin.ogv
38168images/stick.png
38169images/surface.png
38170images/undisplay.png
38171images/uparrow.png
38172images/view.png
38173images/view3.png
38174images/view3nice.png
38175images/vopsub.png
38176images/vopsub2.png
38177images/water.png
38178images/zone.png
38179
38180sent 5,982,318 bytes received 807 bytes 11,966,250.00 bytes/sec
38181total size is 5,978,306 speedup is 1.00
38182make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/quickstart'
38183make -C user install
38184make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/user'
38185make -C tools install
38186make[4]: Entering directory '/home/goddard/ucsf/chimerax/docs/user/tools'
38187if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/mouse-icons" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/mouse-icons; fi
38188/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv /home/goddard/ucsf/chimerax/src/bundles/mouse_modes/src/icons/*.png /home/goddard/ucsf/chimerax/src/bundles/bond_rot/src/bondrot.png /home/goddard/ucsf/chimerax/src/bundles/struct_measure/src/distance.png /home/goddard/ucsf/chimerax/src/bundles/label/src/label.png /home/goddard/ucsf/chimerax/src/bundles/color_key/src/icons/ckiconvertical.png /home/goddard/ucsf/chimerax/src/bundles/label/src/movelabel.png /home/goddard/ucsf/chimerax/src/bundles/map/src/icons/*.png /home/goddard/ucsf/chimerax/src/bundles/map_series/src/vseries.png /home/goddard/ucsf/chimerax/src/bundles/markers/src/icons/*.png /home/goddard/ucsf/chimerax/src/bundles/orthopick/src/icons/*.png /home/goddard/ucsf/chimerax/src/bundles/segmentations/src/icons/*small.svg /home/goddard/ucsf/chimerax/src/bundles/std_commands/src/coordset.png /home/goddard/ucsf/chimerax/src/bundles/swapaa/src/swapaa.png /home/goddard/ucsf/chimerax/src/bundles/tug/src/minimize.png /home/goddard/ucsf/chimerax/src/bundles/tug/src/tug.png /home/goddard/ucsf/chimerax/src/bundles/zone/src/zone.png /home/goddard/ucsf/chimerax/src/bundles/pick_blobs/src/pickblobs.png /home/goddard/ucsf/chimerax/src/bundles/map_eraser/src/eraser.png /home/goddard/ucsf/chimerax/src/bundles/tape_measure/src/tape.png /home/goddard/ucsf/chimerax/src/bundles/viewdockx/src/nextdocking.png /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/mouse-icons
38189sending incremental file list
38190ball.png
38191bondrot.png
38192center.png
38193ckiconvertical.png
38194clip.png
38195clip_wht.png
38196cliprot.png
38197cliprot_wht.png
38198contour.png
38199coordset.png
38200crop.png
38201delete.png
38202distance.png
38203eraser.png
38204label.png
38205link.png
38206marker.png
38207marker2.png
38208maximum.png
38209minimize.png
38210mouse_small.svg
38211move.png
38212move_atoms.png
38213move_h2o.png
38214move_picked_model.png
38215movelabel.png
38216moveplanes.png
38217nextdocking.png
38218orthopick.png
38219pickblobs.png
38220pivot.png
38221plane.png
38222point.png
38223resize.png
38224right_controller_small.svg
38225rotate.png
38226rotate_atoms.png
38227rotate_h2o.png
38228rotatesel.png
38229rotateslab.png
38230select.png
38231surface.png
38232swapaa.png
38233tape.png
38234translate.png
38235tug.png
38236vseries.png
38237windowing.png
38238zone.png
38239zoom.png
38240
38241sent 533,382 bytes received 966 bytes 1,068,696.00 bytes/sec
38242total size is 530,063 speedup is 0.99
38243if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/shortcut-icons" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/shortcut-icons; fi
38244/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv /home/goddard/ucsf/chimerax/src/bundles/shortcuts/src/icons/*.png /home/goddard/ucsf/chimerax/src/bundles/shortcuts/src/icons/*.svg /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/shortcut-icons
38245sending incremental file list
38246airways.png
38247atomhide-dark.png
38248atomhide.png
38249atomshow.png
38250ball.png
38251bfactor.png
38252blackbg.png
38253brain.png
38254camera.png
38255chest.png
38256colorbychain.png
38257colorbyelement.png
38258colorrandom.png
38259colorzone.png
38260cubeoutline.png
38261diffmap.png
38262dust.png
38263ear.png
38264esp.png
38265fitmap.png
38266flat.png
38267fulllight.png
38268fullvolume.png
38269graybg.png
38270hbonds.png
38271hbondsflat.png
38272hbondsflathide.png
38273hbondshide.png
38274hidemap.png
38275hydrophobicity.png
38276icecube.png
38277initialcurve.png
38278interfaces.png
38279lock.png
38280mapimage.png
38281mapsurf.png
38282mesh.png
38283orient-dark.png
38284orient.png
38285orthoplanes.png
38286outlinebox.png
38287perpslice.png
38288plane.png
38289polymer.png
38290rainbow.png
38291raycasting.svg
38292ribbon.png
38293ribhide-dark.png
38294ribhide.png
38295ribshow.png
38296sequence.png
38297shadow.png
38298showmap.png
38299silhouette-dark.png
38300silhouette.png
38301simplelight.png
38302slab.png
38303smooth.png
38304softlight.png
38305sphere.png
38306step1.png
38307step2.png
38308step4.png
38309stick.png
38310surf.png
38311surfhide-dark.png
38312surfhide.png
38313surfshow.png
38314video.png
38315viewall-dark.png
38316viewall.png
38317viewsel-dark.png
38318viewsel.png
38319volzone.png
38320vr.png
38321whitebg.png
38322xr.png
38323xyzslice.png
38324
38325sent 654,940 bytes received 1,498 bytes 1,312,876.00 bytes/sec
38326total size is 649,729 speedup is 0.99
38327if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/toolbar-icons" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/toolbar-icons; fi
38328/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv /home/goddard/ucsf/chimerax/src/bundles/toolbar/src/icons/*.png /home/goddard/ucsf/chimerax/src/bundles/medical_toolbar/src/icons/opendicom.png /home/goddard/ucsf/chimerax/src/bundles/sel_inspector/src/icons/magnifying-glass.png /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/toolbar-icons
38329sending incremental file list
38330close-box.png
38331content-save.png
38332exit.png
38333file-image.png
38334magnifying-glass.png
38335open-in-app.png
38336opendicom.png
38337recentfiles-dark.png
38338recentfiles.png
38339redo-variant.png
38340sideview.png
38341undo-variant.png
38342
38343sent 37,061 bytes received 244 bytes 74,610.00 bytes/sec
38344total size is 36,195 speedup is 0.97
38345if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/nuc-icons" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/nuc-icons; fi
38346/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv /home/goddard/ucsf/chimerax/src/bundles/nucleotides/src/icons/*.png /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/nuc-icons
38347sending incremental file list
38348nuc-atoms.png
38349nuc-box.png
38350nuc-color.png
38351nuc-elli.png
38352nuc-fill.png
38353nuc-ladder.png
38354nuc-muff.png
38355nuc-slab.png
38356nuc-stubs.png
38357nuc-tube.png
38358
38359sent 68,328 bytes received 206 bytes 137,068.00 bytes/sec
38360total size is 67,657 speedup is 0.99
38361if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/basic-icons" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/basic-icons; fi
38362/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv /home/goddard/ucsf/chimerax/src/bundles/basic_actions/src/lib/*.svg /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/basic-icons
38363sending incremental file list
38364colorpicker.svg
38365hide.svg
38366show.svg
38367
38368sent 202,336 bytes received 73 bytes 404,818.00 bytes/sec
38369total size is 202,087 speedup is 1.00
38370if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/ui-icons" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/ui-icons; fi
38371/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv /home/goddard/ucsf/chimerax/src/bundles/ui/src/icons/*.png /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools/ui-icons
38372sending incremental file list
38373Default_PubMed.png
38374contract1.png
38375contract2.png
38376contract3.png
38377dark_multi.png
38378expand1.png
38379expand2.png
38380expand3.png
38381gear.png
38382half.png
38383half64.png
38384hidden.png
38385light_multi.png
38386lightning_day.png
38387lightning_night.png
38388minus.png
38389multi.old.png
38390multi.png
38391multi16.png
38392pause.png
38393pause128.png
38394play.png
38395play256.png
38396record.png
38397record128.png
38398red_circle.png
38399red_square.png
38400select.png
38401shown.png
38402snail.png
38403stop.png
38404stop128.png
38405x.png
38406
38407sent 50,644 bytes received 643 bytes 102,574.00 bytes/sec
38408total size is 48,502 speedup is 0.95
38409if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools; fi
38410/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv addcharges.html addhydrogens.html alphafold.html altlocexplorer.html angles.html axesplanes.html basicactions.html blastprotein.html boltz.html buildstructure.html cagebuilder.html changechains.html checkwaters.html clashes.html cli.html coloractions.html colorkey.html colorzone.html crystalcontacts.html densitymaps.html dicombrowser.html dicommetadata.html distances.html dockprep.html downloaddicom.html esmfold.html filehistory.html findcavities.html fitmap.html fitsegments.html foldseek.html graphics.html hbonds.html helpviewer.html hidedust.html iconbars.html inspector.html log.html mapcoords.html maperaser.html mapfilter.html mapstats.html markerplacement.html markers.html matchmaker.html measureblobs.html measurevolume.html medicalimage.html meeting.html modeller.html modelloops.html modelpanel.html moldisplay.html mousemodes.html nucdisplay.html orthopick.html profilegrid.html registration.html render.html renumber.html rotamers.html scalebar.html segment.html segmentations.html sendtoquest.html sequenceviewer.html sideview.html surfacecolor.html surfacezone.html taskmanager.html thermalellipsoids.html toolbar.html unitcell.html viewdock.html volumeviewer.html 1bzm-others-screenshot.png 3eebB-dx-screenshot.png 7lcj.png altloc-explorer.png checkwaters.png clusters-1gvz-af.png create_segmentation.png dicombrowser.png move_cursor.png objectlist.png orthopick.png profilegrid.png regionbrowser.png resize_cursor.png rotamer-list.png segmentation.png segmentations.png sequences.png sideview.png tcia1.png tcia2.png tcia3.png tcia4.png torsions.png uniprot-features.png worms.png /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tools
38411sending incremental file list
384121bzm-others-screenshot.png
384133eebB-dx-screenshot.png
384147lcj.png
38415addcharges.html
38416addhydrogens.html
38417alphafold.html
38418altloc-explorer.png
38419altlocexplorer.html
38420angles.html
38421axesplanes.html
38422basicactions.html
38423blastprotein.html
38424boltz.html
38425buildstructure.html
38426cagebuilder.html
38427changechains.html
38428checkwaters.html
38429checkwaters.png
38430clashes.html
38431cli.html
38432clusters-1gvz-af.png
38433coloractions.html
38434colorkey.html
38435colorzone.html
38436create_segmentation.png
38437crystalcontacts.html
38438densitymaps.html
38439dicombrowser.html
38440dicombrowser.png
38441dicommetadata.html
38442distances.html
38443dockprep.html
38444downloaddicom.html
38445esmfold.html
38446filehistory.html
38447findcavities.html
38448fitmap.html
38449fitsegments.html
38450foldseek.html
38451graphics.html
38452hbonds.html
38453helpviewer.html
38454hidedust.html
38455iconbars.html
38456inspector.html
38457log.html
38458mapcoords.html
38459maperaser.html
38460mapfilter.html
38461mapstats.html
38462markerplacement.html
38463markers.html
38464matchmaker.html
38465measureblobs.html
38466measurevolume.html
38467medicalimage.html
38468meeting.html
38469modeller.html
38470modelloops.html
38471modelpanel.html
38472moldisplay.html
38473mousemodes.html
38474move_cursor.png
38475nucdisplay.html
38476objectlist.png
38477orthopick.html
38478orthopick.png
38479profilegrid.html
38480profilegrid.png
38481regionbrowser.png
38482registration.html
38483render.html
38484renumber.html
38485resize_cursor.png
38486rotamer-list.png
38487rotamers.html
38488scalebar.html
38489segment.html
38490segmentation.png
38491segmentations.html
38492segmentations.png
38493sendtoquest.html
38494sequences.png
38495sequenceviewer.html
38496sideview.html
38497sideview.png
38498surfacecolor.html
38499surfacezone.html
38500taskmanager.html
38501tcia1.png
38502tcia2.png
38503tcia3.png
38504tcia4.png
38505thermalellipsoids.html
38506toolbar.html
38507torsions.png
38508uniprot-features.png
38509unitcell.html
38510viewdock.html
38511volumeviewer.html
38512worms.png
38513
38514sent 4,391,456 bytes received 1,935 bytes 8,786,782.00 bytes/sec
38515total size is 4,383,667 speedup is 1.00
38516make[4]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user/tools'
38517make -C dicom install
38518make[4]: Entering directory '/home/goddard/ucsf/chimerax/docs/user/dicom'
38519if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/dicom" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/dicom; fi
38520/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv dicom.html screenshot1.png screenshot2.png screenshot3.png /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/dicom
38521sending incremental file list
38522dicom.html
38523screenshot1.png
38524screenshot2.png
38525screenshot3.png
38526
38527sent 824,949 bytes received 92 bytes 1,650,082.00 bytes/sec
38528total size is 824,481 speedup is 1.00
38529make[4]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user/dicom'
38530make -C tutorials install
38531make[4]: Entering directory '/home/goddard/ucsf/chimerax/docs/user/tutorials'
38532if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tutorials" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tutorials; fi
38533/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv binding-sites.html bind1.png bind2.png bind3.png bind4.png bind5.png bind6.png dicom-vr2.png dicom-vr3.png dicom-vr6.png mlpclip.png /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user/tutorials
38534sending incremental file list
38535bind1.png
38536bind2.png
38537bind3.png
38538bind4.png
38539bind5.png
38540bind6.png
38541binding-sites.html
38542dicom-vr2.png
38543dicom-vr3.png
38544dicom-vr6.png
38545mlpclip.png
38546
38547sent 1,600,629 bytes received 225 bytes 3,201,708.00 bytes/sec
38548total size is 1,599,554 speedup is 1.00
38549make[4]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user/tutorials'
38550if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user; fi
38551/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv advantages.html atomtypes.html attributes.html autostyle.html dicom-quickref.html fetch.html findseq.html general.html hierarchy.html hydrophobicity.html images.html index.html markers.html measurements.html menu.html modelinfo.html movies.html options.html preferences.html pseudobonds.html radii.html selectcontacts.html selection.html startup.html trajectories.html vr.html vrphone.html window.html userdocs.css commands formats ambient.png blimp.png contacts.png crispr.png density-icons.png flypore.png graphics-icons.png hb3window.png home-icons.png icon-clover.png marker-icons.png medical-icons.png molecule-icons.png mouse-icons.png nuc-icons.png triangled.png triangler.png undock.png x.png ChimeraX-docs-icon.svg ChimeraX-home-icon.svg ChimeraX-icon.svg vive.jpg flypore.cxc kyte-doolittle_hydrophobicity.cxc /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/user
38552sending incremental file list
38553ChimeraX-docs-icon.svg
38554ChimeraX-home-icon.svg
38555ChimeraX-icon.svg
38556advantages.html
38557ambient.png
38558atomtypes.html
38559attributes.html
38560autostyle.html
38561blimp.png
38562contacts.png
38563crispr.png
38564density-icons.png
38565dicom-quickref.html
38566fetch.html
38567findseq.html
38568flypore.cxc
38569flypore.png
38570general.html
38571graphics-icons.png
38572hb3window.png
38573hierarchy.html
38574home-icons.png
38575hydrophobicity.html
38576icon-clover.png
38577images.html
38578index.html
38579kyte-doolittle_hydrophobicity.cxc
38580marker-icons.png
38581markers.html
38582measurements.html
38583medical-icons.png
38584menu.html
38585modelinfo.html
38586molecule-icons.png
38587mouse-icons.png
38588movies.html
38589nuc-icons.png
38590options.html
38591preferences.html
38592pseudobonds.html
38593radii.html
38594selectcontacts.html
38595selection.html
38596startup.html
38597trajectories.html
38598triangled.png
38599triangler.png
38600undock.png
38601userdocs.css
38602vive.jpg
38603vr.html
38604vrphone.html
38605window.html
38606x.png
38607commands/
38608commands/2dlabels.html
38609commands/addcharge.html
38610commands/addh.html
38611commands/alias.html
38612commands/align.html
38613commands/alphafold.html
38614commands/altlocs.html
38615commands/amino-coloring.cxc
38616commands/angle.html
38617commands/aniso.html
38618commands/atomspec-diffsum.html
38619commands/atomspec.html
38620commands/blastprotein.html
38621commands/boltz.html
38622commands/bond.html
38623commands/box.png
38624commands/build.html
38625commands/bumps.html
38626commands/bumps.png
38627commands/buttonpanel.html
38628commands/buttonpanel.png
38629commands/camera.html
38630commands/cartoon.html
38631commands/cd.html
38632commands/changechains.html
38633commands/chirality.html
38634commands/clashes.html
38635commands/clip.html
38636commands/close.html
38637commands/cofr.html
38638commands/color.html
38639commands/colornames.html
38640commands/colortables.html
38641commands/combine.html
38642commands/contacts.png
38643commands/coordset.html
38644commands/coulombic.html
38645commands/crossfade.html
38646commands/crosslinks.html
38647commands/crystalcontacts.html
38648commands/cylinders.png
38649commands/defattr.html
38650commands/define.html
38651commands/delete.html
38652commands/devel.html
38653commands/device.html
38654commands/distance.html
38655commands/dockprep.html
38656commands/dssp.html
38657commands/ecm-coloring.cxc
38658commands/ellipsoid.png
38659commands/esmfold.html
38660commands/exit.html
38661commands/fill.png
38662commands/fitmap.html
38663commands/fly.html
38664commands/foldseek.html
38665commands/getcrd.html
38666commands/graphics.html
38667commands/hbonds.html
38668commands/help.html
38669commands/histogram.png
38670commands/hkcage.html
38671commands/info.html
38672commands/interfaces.html
38673commands/key.html
38674commands/kvfinder.html
38675commands/label.html
38676commands/ladder.png
38677commands/licorice.png
38678commands/lighting.html
38679commands/log.html
38680commands/mapcolors.png
38681commands/marker.html
38682commands/matchmaker.html
38683commands/material.html
38684commands/mcopy.html
38685commands/measure.html
38686commands/meeting.html
38687commands/minimize.html
38688commands/mlp.html
38689commands/modelcif.html
38690commands/modeller.html
38691commands/molmap.html
38692commands/morph.html
38693commands/move.html
38694commands/movie.html
38695commands/mseries.html
38696commands/muffler.png
38697commands/mutationlabel.png
38698commands/mutationscores.html
38699commands/name.html
38700commands/nucleotides.html
38701commands/nucrib.png
38702commands/open.html
38703commands/palette.html
38704commands/palettes.html
38705commands/pbond.html
38706commands/perframe.html
38707commands/pointspec.html
38708commands/prc.png
38709commands/preset.html
38710commands/pwd.html
38711commands/registration.html
38712commands/remotecontrol.html
38713commands/rename.html
38714commands/renumber.html
38715commands/resfit.html
38716commands/resplot.png
38717commands/rmsd.html
38718commands/rna.html
38719commands/rock.html
38720commands/roll.html
38721commands/runscript.html
38722commands/save.html
38723commands/scalebar.html
38724commands/scatterplot.png
38725commands/segger.html
38726commands/segmentation.html
38727commands/segmentations.html
38728commands/select.html
38729commands/seqspec.html
38730commands/sequence.html
38731commands/set.html
38732commands/setattr.html
38733commands/shape.html
38734commands/shapely-coloring.cxc
38735commands/show.html
38736commands/similarstructures.html
38737commands/size.html
38738commands/slab.png
38739commands/smoothlines.html
38740commands/snapshot.html
38741commands/split.html
38742commands/stop.html
38743commands/struts.html
38744commands/stubs.png
38745commands/style.html
38746commands/style1.png
38747commands/surface-diagram.png
38748commands/surface.html
38749commands/swapaa.html
38750commands/swapna.html
38751commands/sym.html
38752commands/symbols.html
38753commands/taskman.html
38754commands/tile.html
38755commands/toolshed.html
38756commands/topography.html
38757commands/torsion.html
38758commands/transparency.html
38759commands/tug.html
38760commands/turn.html
38761commands/ui.html
38762commands/undo.html
38763commands/unitcell.html
38764commands/usage.html
38765commands/usageconventions.html
38766commands/version.html
38767commands/view.html
38768commands/volume.html
38769commands/vseries.html
38770commands/wait.html
38771commands/windowsize.html
38772commands/wobble.html
38773commands/zone.html
38774commands/zoom.html
38775formats/
38776formats/XYZ-axes.bild
38777formats/bild.html
38778formats/clustgroups.html
38779formats/defattr.html
38780formats/dock4.mol2
38781formats/example.bild
38782formats/getarea-121p.txt
38783formats/hhHydrophobicity.defattr
38784formats/imod.html
38785formats/kdHydrophobicity.defattr
38786formats/mfHydrophobicity.defattr
38787formats/midasrad.defattr
38788formats/mutationcsv.html
38789formats/pdbintro.html
38790formats/percentExposed.defattr
38791formats/positions.html
38792formats/scf.html
38793formats/sff.html
38794formats/sms.html
38795formats/storm.html
38796formats/ttHydrophobicity.defattr
38797formats/vtk.html
38798formats/wwHydrophobicity.defattr
38799
38800sent 5,794,946 bytes received 4,672 bytes 11,599,236.00 bytes/sec
38801total size is 5,777,564 speedup is 1.00
38802make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/user'
38803make -C js install
38804make[3]: Entering directory '/home/goddard/ucsf/chimerax/docs/js'
38805if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/js" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/js; fi
38806/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv cxlinks.js /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs/js
38807sending incremental file list
38808cxlinks.js
38809
38810sent 888 bytes received 35 bytes 1,846.00 bytes/sec
38811total size is 793 speedup is 0.86
38812make[3]: Leaving directory '/home/goddard/ucsf/chimerax/docs/js'
38813if [ ! -d "/home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs" ]; then mkdir -p /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs; fi
38814/home/goddard/ucsf/chimerax/prereqs/win32/rsync.convert -rlptWv contact.html credits.html embedded.html index.html license.html licensing.html morerefs.html presentations.html troubleshoot.html webservices.html license.html embedded.html licenses videos /home/goddard/ucsf/chimerax/ChimeraX.app/bin/share/docs
38815sending incremental file list
38816contact.html
38817credits.html
38818embedded.html
38819index.html
38820license.html
38821licensing.html
38822morerefs.html
38823presentations.html
38824troubleshoot.html
38825webservices.html
38826licenses/
38827licenses/Cython-COPYING.txt
38828licenses/Jinja2-LICENSE.txt
38829licenses/MarkupSafe-LICENSE.txt
38830licenses/PyQt6-Qt6-LICENSE.txt
38831licenses/PyQt6-WebEngine-Qt6-LICENSE.txt
38832licenses/PyQt6_sip-LICENSE.txt
38833licenses/Pygments-LICENSE.txt
38834licenses/QtPy-LICENSE.txt
38835licenses/RandomWords-LICENSE.txt
38836licenses/alabaster-LICENSE.rst
38837licenses/appdirs-LICENSE.txt
38838licenses/asttokens-LICENSE.txt
38839licenses/babel-LICENSE.txt
38840licenses/basictypes-license.txt
38841licenses/beautifulsoup4-LICENSE.txt
38842licenses/blockdiag-LICENSE.txt
38843licenses/blosc2-LICENSE.txt
38844licenses/certifi-LICENSE.txt
38845licenses/cftime-LICENSE.txt
38846licenses/charset-normalizer-LICENSE.txt
38847licenses/colorama-LICENSE.txt
38848licenses/comm-LICENSE.txt
38849licenses/comtypes-LICENSE.txt
38850licenses/contourpy-LICENSE.txt
38851licenses/coverage-LICENSE.txt
38852licenses/cpp-peglib-license.txt
38853licenses/cycler-LICENSE.txt
38854licenses/debugpy-LICENSE.txt
38855licenses/decorator-LICENSE.txt
38856licenses/docutils-COPYING.txt
38857licenses/executing-LICENSE.txt
38858licenses/ffmpeg-LICENSE.html
38859licenses/filelock-LICENSE.txt
38860licenses/fonttools-LICENSE.txt
38861licenses/funcparserlib-LICENSE.txt
38862licenses/glfw-LICENSE.txt
38863licenses/grako-LICENSE.txt
38864licenses/idna-LICENSE.md
38865licenses/ihm-LICENSE.txt
38866licenses/imagecodecs-LICENSE.txt
38867licenses/imagesize-LICENSE.rst
38868licenses/iniconfig-LICENSE.txt
38869licenses/ipykernel-LICENSE.txt
38870licenses/ipython-LICENSE.txt
38871licenses/ipython_pygments_lexers-LICENSE.txt
38872licenses/ipywidgets-LICENSE.txt
38873licenses/jedi-LICENSE.txt
38874licenses/jupyter_client-LICENSE.txt
38875licenses/jupyterlab_widgets-LICENSE.txt
38876licenses/kiwisolver-LICENSE.txt
38877licenses/line_profiler-LICENSE.txt
38878licenses/lxml-LICENSE.txt
38879licenses/lz4-LICENSE.txt
38880licenses/matplotlib-LICENSE.txt
38881licenses/matplotlib-inline-LICENSE.txt
38882licenses/msgpack-COPYING.txt
38883licenses/ndindex-LICENSE.txt
38884licenses/nest-asyncio-LICENSE.txt
38885licenses/netCDF4-LICENSE.txt
38886licenses/networkx-LICENSE.txt
38887licenses/nibabel-COPYING.txt
38888licenses/nptyping-LICENSE.txt
38889licenses/numpy-LICENSE.txt
38890licenses/openvr-LICENSE.txt
38891licenses/packaging-LICENSE.txt
38892licenses/parso-LICENSE.txt
38893licenses/pep517-LICENSE.txt
38894licenses/pkginfo-LICENSE.txt
38895licenses/platformdirs-LICENSE.txt
38896licenses/pluggy-LICENSE.txt
38897licenses/prompt_toolkit-LICENSE.txt
38898licenses/psutil-LICENSE.txt
38899licenses/pure_eval-LICENSE.txt
38900licenses/py-cpuinfo-LICENSE.txt
38901licenses/pycollada-COPYING.txt
38902licenses/pydicom-LICENSE.txt
38903licenses/pynmrstar-LICENSE.txt
38904licenses/pynrrd-LICENSE.txt
38905licenses/pyopenxr-LICENSE.txt
38906licenses/pyproject_hooks-LICENSE.txt
38907licenses/pytest-LICENSE.txt
38908licenses/pytest-cov-LICENSE.txt
38909licenses/python-dateutil-LICENSE.txt
38910licenses/pytz-LICENSE.txt
38911licenses/pyzmq-LICENSE.md
38912licenses/qtconsole-LICENSE.txt
38913licenses/requests-LICENSE.txt
38914licenses/scipy-LICENSE.txt
38915licenses/sfftk-rw-LICENSE.txt
38916licenses/six-LICENSE.txt
38917licenses/snowballstemmer-COPYING.txt
38918licenses/sortedcontainers-LICENSE.txt
38919licenses/soupsieve-LICENSE.md
38920licenses/sphinx-autodoc-typehints-LICENSE.txt
38921licenses/sphinxcontrib-blockdiag-LICENSE.txt
38922licenses/sphinxcontrib-jsmath-LICENSE.txt
38923licenses/stack-data-LICENSE.txt
38924licenses/superqt-LICENSE.txt
38925licenses/tables-LICENSE.txt
38926licenses/tcia_utils-LICENSE.txt
38927licenses/tifffile-LICENSE.txt
38928licenses/tinyarray-LICENSE.rst
38929licenses/tornado-LICENSE.txt
38930licenses/traitlets-LICENSE.txt
38931licenses/tzdata-LICENSE.txt
38932licenses/wcwidth-LICENSE.txt
38933licenses/webcolors-LICENSE.txt
38934licenses/wheel-LICENSE.txt
38935licenses/wheel-filename-LICENSE.txt
38936licenses/widgetsnbextension-LICENSE.txt
38937videos/
38938videos/index.html
38939videos/images/
38940videos/images/af_contacts.jpg
38941videos/images/af_multimer.jpg
38942videos/images/alphafold_assembly.jpg
38943videos/images/alphafold_fetch.jpg
38944videos/images/alphafold_fit.jpg
38945videos/images/alphafold_pae.jpg
38946videos/images/alphafold_pae_sbgrid.jpg
38947videos/images/alphafold_predict.jpg
38948videos/images/alphafold_run.jpg
38949videos/images/alphafold_sbgrid.jpg
38950videos/images/ar.jpg
38951videos/images/blender.jpg
38952videos/images/boltz.jpg
38953videos/images/boltz_affinity.jpg
38954videos/images/boltz_ligands.jpg
38955videos/images/ca_rmsd.jpg
38956videos/images/chimerax_colabfold.jpg
38957videos/images/colabfold_a100.jpg
38958videos/images/colorem.jpg
38959videos/images/corona.jpg
38960videos/images/crm1.jpg
38961videos/images/dicomvr.jpg
38962videos/images/ferritin.jpg
38963videos/images/fitting.jpg
38964videos/images/isolde1.jpg
38965videos/images/isolde2.jpg
38966videos/images/localres.jpg
38967videos/images/moviemaking.jpg
38968videos/images/multiwfn.jpg
38969videos/images/nanobody.jpg
38970videos/images/opioids.jpg
38971videos/images/pharmchem.jpg
38972videos/images/rmsd_color.jpg
38973videos/images/tug.jpg
38974videos/images/zone.jpg
38975
38976sent 1,526,513 bytes received 3,004 bytes 1,019,678.00 bytes/sec
38977total size is 1,567,991 speedup is 1.03
38978make[2]: Leaving directory '/home/goddard/ucsf/chimerax/docs'
38979/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I utils/clean_app.py
38980/home/goddard/ucsf/chimerax/ChimeraX.app/bin/python.exe -I -m pip check
38981No broken requirements found.
38982Finished install at Tue Sep 23 12:16:16 PDT 2025
38983make[1]: Leaving directory '/home/goddard/ucsf/chimerax'