[Chimera-users] Delphi calculation for electrostatic surface potential

Elaine Meng meng at cgl.ucsf.edu
Mon Jun 18 08:59:44 PDT 2007

Hi Shensuke,
Chimera does not calculate electrostatic potential.  The  
DelPhiController tool works with the delphi program, but you have to  
get the delphi program separately from the Honig group.  Here is more  
information, including how to use that tool after you get DelPhi:

Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jun 17, 2007, at 10:50 PM, Shunsuke Meshitsuka wrote:

> Dear Doctors,
> I want to calculate surface potential by Delphi type calculation.
> I have tried from Menu bar,
> tool ---  DelPhi
> ,but  have not obtained the results.
> Please let me know the way to use them for the calculation of surface
> potentials from a PDB fie  in linux version of chimera-1.2417.
> Shunsuke Meshitsuka D.Sci., D.Med.
> Tottori University Graduate School of Medical Science
> Institute of  Regenerative Medicine and Biofunction,
> Division of Integrative Bioscience
> 86 Nishimachi Yonago Tottori 683-8503 Japan
> tel +81-859-38-6422 fax +81-859-38-6423
> Email: mesh at grape.med.tottori-u.ac.jp
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