[Chimera-users] cavities

Elaine Meng meng at cgl.ucsf.edu
Fri Jun 15 10:05:10 PDT 2007

Hi Pablo,
You could try Surfnet (under Tools... Surface/Binding Analysis).

Outside of Chimera, I personally like the CASTp method; this page links  
to a server and a publications list:

Unfortunately, visualization of the CASTp results is more convenient  
with Pymol (because there is a plugin), but the information can also be  
used for further visualization in Chimera.
I hope this helps,
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jun 14, 2007, at 11:45 AM, Pablo Emiliano Tomatis wrote:

> hello
> It is possible to find cavities of a protein using chimera?
> Any hepl???
> thanks in advance
> -- 
> Lic. Pablo E. Tomatis
> Instituto de Biología Molecular y Celular de Rosario (IBR)
> Área Biofísica - Departamento de Química Biológica
> Fac. Cs. Bioq. y Farm. - U.N.Rosario
> Suipacha 531 - S2002LRK- Rosario- Argentina
> Phone:+54-341-4350661/4350596 (ext.110) Fax:+54-341-4390465
> _______________________________________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users

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