[Chimera-users] Labeling Residues
meng at cgl.ucsf.edu
Wed Dec 1 11:00:47 PST 2004
Eric already mentioned the most important point:
that this is only the format used within the Custom Residue
Label dialog (opened with Actions... Label... residue... custom
in the Chimera menu).
The string starting with "wt" mentioned in your mail is just
an example from the man page. If you didn't want "wt" in your
label, of course, it shouldn't appear in that string.
The Custom Residue Label dialog doesn't actually require
anyone to type in those slightly ugly strings by hand, however.
If you really wanted the label to be
for example, you would just select that serine residue, open
the dialog from the menu, and then click the buttons
(in that order) and then Apply.
Hope this clarifies -
Elaine C. Meng, Ph.D. meng at cgl.ucsf.edu
Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
On Dec 1, 2004, at 7:43 AM, Stephen P. Molnar, Ph.D. wrote:
> I have to admit to being completly flumoxed [sic] by this one!
> How do I label an individual residue: According to help the format is:
> wt %(1-letter code)s%(number)s
> Now I have an enzyme, 1QTI.pdb in which I wish to label the SER200
> label. I have tried every combination of the example on the help page
> that I can think of without success.
> What is the exact format for creating that label?
> Thanks in advance.
> Stephen P. Molnar, Ph.D. Life is a fuzzy set
> Foundation for Chemistry Stochastic and multivariant
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> Chimera-users at cgl.ucsf.edu
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