In Chimera, you can:
- display individual sequences of structures
- display sequence alignments
- create sequence alignments from structures
Sequences and structures are automatically linked to each other.
- Demonstration (~25 mins):
- preview of some of the tools you will be using
- OK (preferable?) to watch rather than trying to copy my actions;
if you do try things, close session before starting tutorials
- Hands-on tutorials:
- Sequences and Structures tutorial
- intro to Multalign Viewer and sequence-structure crosstalk
- Superpositions and Alignments tutorial
- superimposing structures with MatchMaker and creating a multiple
sequence alignment with Match→Align
All demonstration and tutorial data files are in the
chimera-seqstruct folder on the Desktop.
If you don't have that folder, download it from
www.cgl.ucsf.edu/chimera/data/tutorials/library/class.html
The tutorials and associated data are also included with Chimera and
can be accessed from the Help menu, so you can use them at any time
(independent of this class).
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