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Citations (partial list)

The path of pre-ribosomes through the nuclear pore complex revealed by electron tomography. Delavoie F, Soldan V et al. Nat Commun. 2019 Jan 30;10(1):497.

FGF21 trafficking in intact human cells revealed by cryo-electron tomography with gold nanoparticles. Azubel M, Carter SD et al. eLife. 2019 Jan 28;8. pii: e43146.

Structural basis for species-selective targeting of Hsp90 in a pathogenic fungus. Whitesell L, Robbins N et al. Nat Commun. 2019 Jan 24;10(1):402.

GABAA receptor signalling mechanisms revealed by structural pharmacology. Masiulis S, Desai R et al. Nature. 2019 Jan 24;565(7740):454-459.

Chemical cross-linking enables drafting ClpXP proximity maps and taking snapshots of in situ interaction networks. Fux A, Korotkov VS et al. Cell Chem Biol. 2019 Jan 17;26(1):48-59.e7.

Domain insertion permissibility-guided engineering of allostery in ion channels. Coyote-Maestas W, He Y et al. Nat Commun. 2019 Jan 17;10(1):290.

Structure of the SLy1 SAM homodimer reveals a new interface for SAM domain self-association. Kukuk L, Dingley AJ et al. Sci Rep. 2019 Jan 10;9(1):54.

Structure of the posttranslational Sec protein-translocation channel complex from yeast. Itskanov S, Park E. Science. 2019 Jan 4;363(6422):84-87.

Structures of TRPV2 in distinct conformations provide insight into role of the pore turret. Dosey TL, Wang Z et al. Nat Struct Mol Biol. 2019 Jan;26(1):40-49.

Polarized displacement by transcription activator-like effectors for regulatory circuits. Lebar T, Verbič A et al. Nat Chem Biol. 2019 Jan;15(1):80-87.

Structure of human TFIID and mechanism of TBP loading onto promoter DNA. Patel AB, Louder RK et al. Science. 2018 Dec 21;362(6421). pii: eaau8872.

Structure of native lens connexin 46/50 intercellular channels by cryo-EM. Myers JB, Haddad BG et al. Nature. 2018 Dec 20;564(7736):372-377.

Does ionic screening lower activation barriers for conformational transitions in proteins? Antosiewicz JM, Długosz M. J Phys Chem B. 2018 Dec 20;122(50):11817-11826.

CryoEM reveals how the complement membrane attack complex ruptures lipid bilayers. Menny A, Serna M et al. Nat Commun. 2018 Dec 14;9(1):5316.

Structure and architecture of immature and mature murine leukemia virus capsids. Qu K, Glass B et al. Proc Natl Acad Sci USA. 2018 Dec 11;115(50):E11751-E11760.

SETD3 protein is the actin-specific histidine N-methyltransferase. Kwiatkowski S, Seliga AK et al. eLife. 2018 Dec 11;7. pii: e37921.

The evolution of ependymin-related proteins. McDougall C, Hammond MJ et al. BMC Evol Biol. 2018 Dec 4;18(1):182.

An electron transfer path connects subunits of a mycobacterial respiratory supercomplex. Gong H, Li J et al. Science. 2018 Nov 30;362(6418). pii: eaat8923.

Binding of histamine to the H1 receptor – a molecular dynamics study. Söldner CA, Horn AHC, Sticht H. J Mol Model. 2018 Nov 29;24(12):346.

Folding pathway of an Ig domain is conserved on and off the ribosome. Tian P, Steward A et al. Proc Natl Acad Sci USA. 2018 Nov 27;115(48):E11284-E11293.

Tracing whale myoglobin evolution by resurrecting ancient proteins. Isogai Y, Imamura H et al. Sci Rep. 2018 Nov 15;8(1):16883.

Conformational transitions of the serotonin 5-HT3 receptor. Polovinkin L, Hassaine G et al. Nature. 2018 Nov 8;563(7730):275-279.

Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core. Borst AJ, Weidle CE et al. eLife. 2018 Nov 7;7. pii: e37688.

Molecular structure of promoter-bound yeast TFIID. Kolesnikova O, Ben-Shem A et al. Nat Commun. 2018 Nov 7;9(1):4666.

Flaviviruses have imperfect icosahedral symmetry. Therkelsen MD, Klose T et al. Proc Natl Acad Sci USA. 2018 Nov 6;115(45):11608-11612.

Structural basis of the nucleosome transition during RNA polymerase II passage. Kujirai T, Ehara H et al. Science. 2018 Nov 2;362(6414):595-598.

Cross-linked peptide identification: A computational forest of algorithms. Yılmaz Ş, Shiferaw GA et al. Mass Spectrom Rev. 2018 Nov;37(6):738-749.

Conformational flexibility of pore loop-1 gives insights into substrate translocation by the AAA+ protease FtsH. Uthoff M, Baumann U. J Struct Biol. 2018 Nov;204(2):199-206.

Hierarchical organization endows the kinase domain with regulatory plasticity. Creixell P, Pandey JP et al. Cell Syst. 2018 Oct 24;7(4):371-383.e4.

The structure and dynamics of C. elegans tubulin reveals the mechanistic basis of microtubule growth. Chaaban S, Jariwala S et al. Dev Cell. 2018 Oct 22;47(2):191-204.e8.

Structural basis for the modulation of voltage-gated sodium channels by animal toxins. Shen H, Li Z et al. Science. 2018 Oct 19;362(6412). pii: eaau2596.

Structure and dynamics of the yeast SWR1-nucleosome complex. Willhoft O, Ghoneim M et al. Science. 2018 Oct 12;362(6411). pii: eaat7716.

A viral protein restricts Drosophila RNAi immunity by regulating Argonaute activity and stability. Nayak A, Kim DY et al. Cell Host Microbe. 2018 Oct 10;24(4):542-557.e9.

High-resolution structures of HIV-1 Gag cleavage mutants determine structural switch for virus maturation. Mattei S, Tan A et al. Proc Natl Acad Sci USA. 2018 Oct 2;115(40):E9401-E9410.

Structural basis for activation of voltage sensor domains in an ion channel TPC1. Kintzer AF, Green EM et al. Proc Natl Acad Sci USA. 2018 Sep 25;115(39):E9095-E9104.

Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin. Hu J, Worrall LJ et al. Nat Commun. 2018 Sep 21;9(1):3840.

Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Mishra S, Ahmed T et al. Sci Rep. 2018 Sep 11;8(1):13587.

Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. Tan YZ, Aiyer S et al. Nat Commun. 2018 Sep 7;9(1):3628.

Malaria parasite translocon structure and mechanism of effector export. Ho CM, Beck JR et al. Nature. 2018 Sep 6;561(7721):70-75.

Structural basis of pan-Ebolavirus neutralization by an antibody targeting the glycoprotein fusion loop. Murin CD, Bruhn JF et al. Cell Rep. 2018 Sep 4;24(10):2723-2732.e4.

Crystal structure of the Frizzled 4 receptor in a ligand-free state. Yang S, Wu Y et al. Nature. 2018 Aug 30;560(7720):666-670.

Electron-microscopy-based epitope mapping defines specificities of polyclonal antibodies elicited during HIV-1 BG505 envelope trimer immunization. Bianchi M, Turner HL et al. Immunity. 2018 Aug 21;49(2):288-300.e8.

Structure-based design of a monosaccharide ligand targeting galectin-8. Bohari MH, Yu X et al. ChemMedChem. 2018 Aug 20;13(16):1664-1672.

Single-particle cryo-EM structure of a voltage-activated potassium channel in lipid nanodiscs. Matthies D, Bae C et al. eLife. 2018 Aug 15;7. pii: e37558.

Structure and analysis of R1 and R2 pyocin receptor-binding fibers. Buth SA, Shneider MM et al. Viruses. 2018 Aug 14;10(8). pii: E427.

Cryo-EM of the dynamin polymer assembled on lipid membrane. Kong L, Sochacki KA et al. Nature. 2018 Aug 9;560(7717):258-262.

Structural basis of cell wall anchoring by SLH domains in Paenibacillus alvei. Blackler RJ, López-Guzmán A et al. Nat Commun. 2018 Aug 7;9(1):3120.

Insights into centriole geometry revealed by cryotomography of doublet and triplet centrioles. Greenan GA, Keszthelyi B et al. eLife. 2018 Aug 6;7. pii: e36851.

Structure of mouse protocadherin 15 of the stereocilia tip link in complex with LHFPL5. Ge J, Elferich J et al. eLife. 2018 Aug 2;7. pii: e38770.

Cryo-EM structure of the αvβ8 integrin reveals a mechanism for stabilizing integrin extension. Cormier A, Campbell MG et al. Nat Struct Mol Biol. 2018 Aug;25(8):698-704.

A new HIV-1 Rev structure optimizes interaction with target RNA (RRE) for nuclear export. Watts NR, Eren E et al. J Struct Biol. 2018 Aug;203(2):102-108.

Expanded coverage of the 26S proteasome conformational landscape reveals mechanisms of peptidase gating. Eisele MR, Reed RG et al. Cell Rep. 2018 Jul 31;24(5):1301-1315.e5.

Cryo-EM structures of fungal and metazoan mitochondrial calcium uniporters. Baradaran R, Wang C et al. Nature. 2018 Jul 26;559(7715):580-584.

HIV-1 Nefs are cargo-sensitive AP-1 trimerization switches in tetherin downregulation. Morris KL, Buffalo CZ et al. Cell. 2018 Jul 26;174(3):659-671.e14.

Prespliceosome structure provides insights into spliceosome assembly and regulation. Plaschka C, Lin PC et al. Nature. 2018 Jul 19;559(7714):419-422.

Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser. Nogly P, Weinert T et al. Science. 2018 Jul 13;361(6398). pii: eaat0094.

Structural analysis of influenza vaccine virus-like particles reveals a multicomponent organization. McCraw DM, Gallagher JR et al. Sci Rep. 2018 Jul 9;8(1):10342.

Repurposing drugs to target the malaria parasite unfolding protein response. Chen Y, Murillo-Solano C et al. Sci Rep. 2018 Jul 9;8(1):10333.

Glycan recognition in globally dominant human rotaviruses. Hu L, Sankaran B et al. Nat Commun. 2018 Jul 6;9(1):2631.

Structure of a human synaptic GABAA receptor. Zhu S, Noviello CM et al. Nature. 2018 Jul 5;559(7712):67-72.

Modeling protein complexes using restraints from crosslinking mass spectrometry. Bullock JMA, Sen N et al. Structure. 2018 Jul 3;26(7):1015-1024.e2.

Inhibitors of the HIV-1 capsid, a target of opportunity. Carnes SK, Sheehan JH, Aiken C. Curr Opin HIV AIDS. 2018 Jul;13(4):359-365.

Structure of the adenosine-bound human adenosine A1 receptor-Gi complex. Draper-Joyce CJ, Khoshouei M et al. Nature. 2018 Jun 28;558(7711):559-563.

Self-assembly of highly symmetrical, ultrasmall inorganic cages directed by surfactant micelles. Ma K, Gong Y et al. Nature. 2018 Jun 28;558(7711):577-580.

Structural basis of mitochondrial receptor binding and constriction by DRP1. Kalia R, Wang RY et al. Nature. 2018 Jun 21;558(7710):401-405.

Structural basis for regulation of human acetyl-CoA carboxylase. Hunkeler M, Hagmann A et al. Nature. 2018 Jun 21;558(7710):470-474.

Co-evolution of HIV envelope and apex-targeting neutralizing antibody lineage provides benchmarks for vaccine design. Rantalainen K, Berndsen ZT et al. Cell Rep. 2018 Jun 12;23(11):3249-3261.

In vivo production of RNA nanostructures via programmed folding of single-stranded RNAs. Li M, Zheng M et al. Nat Commun. 2018 Jun 6;9(1):2196.

Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization. Nakae S, Shionyu M et al. Proteins. 2018 Jun;86(6):644-653.

Routine single particle CryoEM sample and grid characterization by tomography. Noble AJ, Dandey VP et al. eLife. 2018 May 29;7. pii: e34257

Structure of telomerase with telomeric DNA. Jiang J, Wang Y et al. Cell. 2018 May 17;173(5):1179-1190.e13.

PyChimera: use UCSF Chimera modules in any Python 2.7 project. Rodríguez-Guerra Pedregal J, Maréchal JD. Bioinformatics. 2018 May 15;34(10):1784-1785.

Structural basis for the recognition of complex-type N-glycans by Endoglycosidase S. Trastoy B, Klontz E et al. Nat Commun. 2018 May 14;9(1):1874.

Structure and mechanism of the two-component α-helical pore-forming toxin YaxAB. Bräuning B, Bertosin E et al. Nat Commun. 2018 May 4;9(1):1806.

Activation mechanism of a human SK-calmodulin channel complex elucidated by cryo-EM structures. Lee CH, MacKinnon R. Science. 2018 May 4;360(6388):508-513.

Architecture of an HIV-1 reverse transcriptase initiation complex. Larsen KP, Mathiharan YK et al. Nature. 2018 May;557(7703):118-122.

Computational 3D genome modeling using Chrom3D. Paulsen J, Liyakat Ali TM, Collas P. Nat Protoc. 2018 May;13(5):1137-1152.

From structure to function - a family portrait of plant subtilases. Schaller A, Stintzi A et al. New Phytol. 2018 May;218(3):901-915.

Structural basis for energy transduction by respiratory alternative complex III. Sousa JS, Calisto F et al. Nat Commun. 2018 Apr 30;9(1):1728.

Asymmetric distribution and spatial switching of dynein activity generates ciliary motility. Lin J, Nicastro D. Science. 2018 Apr 27;360(6387). pii: eaar1968.

Structure of a prehandover mammalian ribosomal SRP·SRP receptor targeting complex. Kobayashi K, Jomaa A et al. Science. 2018 Apr 20;360(6386):323-327.

Cryo-EM structure of the Blastochloris viridis LH1-RC complex at 2.9 Å. Qian P, Siebert CA et al. Nature. 2018 Apr 12;556(7700):203-208.

Structure of the herpes simplex virus 1 capsid with associated tegument protein complexes. Dai X, Zhou ZH. Science. 2018 Apr 6;360(6384). pii: eaao7298.

Structural rearrangements of the histone octamer translocate DNA. Bilokapic S, Strauss M, Halic M. Nat Commun. 2018 Apr 6;9(1):1330.

Structure of the insulin receptor-insulin complex by single-particle cryo-EM analysis. Scapin G, Dandey VP et al. Nature. 2018 Apr 5;556(7699):122-125.

Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule. Tsai JC, Miller-Vedam LE et al. Science. 2018 Mar 30;359(6383).

Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B. Zyryanova AF, Weis F et al. Science. 2018 Mar 30;359(6383):1533-1536.

EF-Tu and EF-G are activated by allosteric effects. Mondal D, Warshel A. Proc Natl Acad Sci USA. 2018 Mar 27;115(13):3386-3391.

Ligand binding site structure influences the evolution of protein complex function and topology. Abrusán G, Marsh JA. Cell Rep. 2018 Mar 20;22(12):3265-3276.

Lipids shape the electron acceptor-binding site of the peripheral membrane protein dihydroorotate dehydrogenase. Costeira-Paulo J, Gault J et al. Cell Chem Biol. 2018 Mar 15;25(3):309-317.e4.

The 3.5-Å cryoEM structure of nanodisc-reconstituted yeast vacuolar ATPase Vo proton channel. Roh SH, Stam NJ et al. Mol Cell. 2018 Mar 15;69(6):993-1004.e3.

Cryo-electron tomography reveals that dynactin recruits a team of dyneins for processive motility. Grotjahn DA, Chowdhury S et al. Nat Struct Mol Biol. 2018 Mar;25(3):203-207.

The cryo-electron microscopy structure of huntingtin. Guo Q, Bin Huang et al. Nature. 2018 Mar 1;555(7694):117-120.

Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data. Orbán-Németh Z, Beveridge R et al. Nat Protoc. 2018 Mar;13(3):478-494.

A recurrent kinase domain mutation in PRKCA defines chordoid glioma of the third ventricle. Goode B, Mondal G et al. Nat Commun. 2018 Feb 23;9(1):810.

Electron cryo-microscopy structure of Ebola virus nucleoprotein reveals a mechanism for nucleocapsid-like assembly. Su Z, Wu C et al. Cell. 2018 Feb 22;172(5):966-978.e12.

A structural model of a p450-ferredoxin complex from orientation-selective double electron-electron resonance spectroscopy. Bowen AM, Johnson EOD et al. J Am Chem Soc. 2018 Feb 21;140(7):2514-2527.

3.3-Å resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound. Brignole EJ, Tsai KL et al. eLife. 2018 Feb 20;7. pii: e31502.

A global view of structure-function relationships in the tautomerase superfamily. Davidson R, Baas BJ et al. J Biol Chem. 2018 Feb 16;293(7):2342-2357.

Cryo-EM reconstruction of Type VI secretion system baseplate and sheath distal end. Nazarov S, Schneider JP et al. EMBO J. 2018 Feb 15;37(4). pii: e97103.


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