note_color_cb ( self,  rgba )

ImportXML ( self )

new_marker_set_cb ( self )

make_markers_panel ( self,  frame )

get_file_path (
        self,
        mslist,
        ask_path,
        )

show_slice_line_cb ( self )

form_link_cb (
        self,
        trigger,
        user_data,
        selection,
        )

Link consecutively selected_markers.

find_marker_set_by_name ( self,  name )

marker_radius_cb ( self,  event )

delete_marker_notes_cb ( self )

chosen_note_markers ( self )

ask_for_save_path (
        self,
        title,
        default_path,
        )

add_marker (
        self,
        pointer_x,
        pointer_y,
        place_markers_on_data,
        place_markers_on_space,
        )

move_marker_cb ( self,  event )

open_marker_set_cb ( self )

display_slice_line ( self,  slice )

Make a VRML line containing a single line connecting 2 points.

marker_radius (
        self,
        data_region=None,
        marker_set=None,
        )

link_color_cb ( self,  rgba )

marker_set_selection_cb ( self,  event )

mouse_drag_cb (
        self,
        viewer,
        event,
        )

marker_note_cb ( self,  event )

link_radius ( self,  data_region=None )

grab_marker (
        self,
        pointer_x,
        pointer_y,
        )

grab_marker_3d ( self,  xyz )

drop_and_link_marker (
        self,
        xyz,
        rgba,
        marker_radius,
        link_radius,
        marker_set,
        )

Xyz position must be in marker set coordinates.

mouse_down_cb (
        self,
        viewer,
        event,
        )

save_all_marker_sets_cb ( self )

mouse_up_cb (
        self,
        viewer,
        event,
        )

transfer_markers_cb ( self )

Transfer selected markers to current marker set.

selected_marker_sets ( self )

If no list box line is selected, include the active marker set.

open_marker_set ( self,  path )

show_slice_maximum ( self,  t_max )

Put vertical line on graph to indicate first maximum.

selected_markers ( self )

unselect_all_markers ( self )

mark_point (
        self,
        xyz,
        marker_set,
        )

Xyz position must be in Chimera world coordinates.

show_markers ( self,  show )

save_selected_marker_sets_cb ( self )

remove_marker_sets ( self,  marker_sets )

set_active_marker_set ( self,  marker_set )

update_slice_graphs ( self,  slice )

mark_first_maximum (
        self,
        slice,
        marker_set,
        )

mark_data (
        self,
        xyz,
        marker_set,
        )

Place marker if data value is above detection threshold.

Xyz position must be in Chimera world coordinates.

make_slice_panel ( self,  frame )

rename_marker_set_cb ( self,  event )

make_mouse_mode_panel ( self,  frame )

consecutive_selection_cb ( self )

This code relies on markers being implemented as atoms.

marker_and_link_radius (
        self,
        marker_set,
        data_region=None,
        )

allow_toplevel_resize_cb ( self )

After user resizes dialog by hand it will not resize automatically when panels are added or deleted. This allows the automatic resize to happen.

show_marker_notes ( self,  show )

update_marker_set_listbox ( self )

mark_clip_planes_midpoint (
        self,
        pointer_x,
        pointer_y,
        marker_set,
        )

show_note_cb (
        self,
        trigger,
        user_data,
        selection,
        )

Update marker note entry field when marker is selected.

make_marker_sets_panel ( self,  frame )

save_marker_set_cb ( self )

mark_slice_midpoint (
        self,
        slice,
        marker_set,
        )

data_slice (
        self,
        pointer_x,
        pointer_y,
        )

mouse_mode_icon ( self )

erase_slice_line ( self )

message ( self,  string )

new_marker_set ( self,  name )

selected_links ( self )

show_color_and_radius_cb (
        self,
        trigger,
        user_data,
        selection,
        )

Update colorwell color when a single model piece is selected.

bind_placement_button ( self,  bind )

save_session_cb (
        self,
        trigger,
        x,
        file,
        )

show_links ( self,  show )

save_marker_set_as_cb ( self )

volume_segment (
        self,
        data_region,
        pointer_x,
        pointer_y,
        )

make_curve_panel ( self,  frame )

reset_thresholds_cb ( self )

close_marker_set_cb ( self )

unmap ( self,  event )

open_file_dialog_cb (
        self,
        apply,
        dialog,
        )

save_marker_sets (
        self,
        mslist,
        path=None,
        ask_path=True,
        )

Save marker sets in one file.

ungrab_marker ( self )

Close ( self )

placement_button_spec ( self )

link_radius_cb ( self,  event )

delete_links_cb ( self )

add_marker_3d ( self,  xyz )

Used with 3D input devices.

The user interface option to turn on and off marker placement and motion apply are intended only to restrict mouse input. So they are not checked here.

marker_color_cb ( self,  rgba )

select_marker ( self,  marker )

Select new marker and deselect other markers.

visible_data_above_threshold (
        self,
        data_region,
        xyz,
        )

data_region ( self )

close_session_cb (
        self,
        trigger,
        a1,
        a2,
        )

unshow_curve_cb ( self )

all_current_markers ( self )

move_marker_3d ( self,  xyz )

Used with 3D input devices.

fillInUI ( self,  parent )

delete_markers_cb ( self )

add_marker_set ( self,  marker_set )

map ( self,  event )

marker_set_menu_cb ( self )

move_marker (
        self,
        pointer_x,
        pointer_y,
        shift,
        )

show_curve_cb ( self,  event=None )

create_link (
        self,
        m1,
        m2,
        rgba,
        radius,
        )

select_marker_3d ( self,  xyz )

bind_placement_button_cb ( self )