Resources
We'll keep updating this list of useful web resources:
Alignment: BLAST
Alignment: BLAT
Alignment: Bowtie
Alignment: Mummer
General: Stanford intro comp bio course
MSA: ClustalW2
MSA: Muscle
MSA: T-COFEE
Networks: Cytoscape
Protein classification: Pfam
Protein classification: Structure Function Linkage Database
Structure: PyMol