2004 BMI 203 Week 3 Assignment
C++ version of Smith-Waterman Python Module
Smith-Waterman algorithms implemented using pure Python
are usually too slow when used in iterative methods
required by many optimization methods.
Below are links to the source of a Smith-Waterman Python
module written in C++. Binaries for some common platforms
are available as well. If you are using an unlisted platform,
please contact me
and we can build it for your machine.
- Usage example
- sw_test.py -
Sample Python code for using sw module
- Binary Python modules, listed with Python version and compilation platform.
Use the "Save Link to Disk..." browser option (usual on the right
mouse button menu) to download.
The saved file name must match the name listed below.
- sw.dll - Python2.3, Windows XP
- sw.so - Python2.3, RedHat 8 Linux
- sw.so - Python 2.3, Mac OSX 10.3
- sw.so - Python 2.3, Tru64 Unix 5.1B
- sw.so - Python 2.2, RedHat 8 Linux
- sw.so - Python 2.2, Mac OSX 10.2
- Source code