[Chimera-users] Dock prep with multiple structures - endless loop?

Oliver Clarke olibclarke at gmail.com
Fri Nov 20 04:54:26 PST 2015


Hi,

Would it be possible to add a progress bar (with ETA) for Dock prep at some point? I ran it overnight to fill partial sidechains on six structures (each ~6000aas), and it still isn’t finished, but I can’t tell whether it is just taking a really long time or whether something has gone wrong. The status bar is still updating with “Matching donors”, “finding acceptors” and “building search tree” messages, but it seems to be giving these messages multiple times for each structure - is that normal?

Cheers,
Oliver.


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