[Chimera-users] Interaction interface between two residues and measure buriedArea
devicerandom at gmail.com
Wed Mar 11 15:48:21 PDT 2015
Thanks for your reply.
On 11/03/15 23:18, Tom Goddard wrote:
> I think buried solvent accessible area (SAS) is most often used when
> buried areas are reported.
OK, thanks. Any justification in the literature for that, just to be on
the safe side?
> Negative values of buried SAS are
> impossible, that would be a bug, probably a failure of the surface
> and if you see a case of that could you send me a
> Chimera session that demostrates it?
I will do it tomorrow.
> Unfortunately with erratic
> surface calculation (which does not always report when it goes awry)
> you cannot be certain the numbers are correct.
Understood. If so, is there any sanity check I can do to see if a
calculation has more or less chances of being meaningful?
Massimo Sandal, Ph.D.
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