[Chimera-users] Shape complementarity
meng at cgl.ucsf.edu
Wed Aug 7 10:23:17 PDT 2013
Chimera does include many ways to evaluate protein-protein interfaces, but nothing like the "shape complementarity" calculation done by that Sc program, sorry.
As you may already know, the things you could do in Chimera include:
- calculating H-bonds and contacts
- showing molecular surfaces of the contact regions and calculating the surface area
- showing "interface surface" with Intersurf tool
- coloring surfaces by hydrophobicity, electrostatic potential, and even concavity/convexity
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
On Aug 7, 2013, at 8:47 AM, Hernando J Sosa wrote:
> Dear Chimera,
> Is there a way to evaluate protein-protein interfaces (e.g. using a program like CCP4 Sc) within chimera?.
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