Hernando J Sosa
hernando.sosa at einstein.yu.edu
Thu May 31 15:25:35 PDT 2012
Thanks Elaine. That certainly help.
Now I have another question I see that the global search can be restricted in shift or rotation but can it also be restricted to a certain radius from the current position ?
From: Elaine Meng [mailto:meng at cgl.ucsf.edu]
Sent: Thursday, May 31, 2012 5:29 PM
To: Hernando J Sosa
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] fitmap
Commands use "specifications" which for whole models are the model numbers (also shown in the Model Panel), for example:
fitmap #0 #1
...if the pdb structure is model 0 and the density map is model 1. There are also lots of options you could include after the model numbers, see
I hope this helps,
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On May 31, 2012, at 2:17 PM, Hernando J Sosa wrote:
> What is the correct syntax to run the fitmap command?. I have a pdb
> structure named C1 and a density map (spider format) named MV (names as appear in the Model panel). If I try in the command line:
> fitmap C1 MV
> I get the error:
> fitmap invalid volume argument "MV"
> What am I doing wrong?
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