meng at cgl.ucsf.edu
Thu May 31 14:29:23 PDT 2012
Commands use "specifications" which for whole models are the model numbers (also shown in the Model Panel), for example:
fitmap #0 #1
...if the pdb structure is model 0 and the density map is model 1. There are also lots of options you could include after the model numbers, see
I hope this helps,
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
On May 31, 2012, at 2:17 PM, Hernando J Sosa wrote:
> What is the correct syntax to run the fitmap command?. I have a pdb structure named C1 and a density map (spider format) named MV (names as appear in the Model panel). If I try
> in the command line:
> fitmap C1 MV
> I get the error:
> fitmap invalid volume argument "MV"
> What am I doing wrong?
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