[Chimera-users] morphing model extrapolation

Gajewski, Stefan Stefan.Gajewski at STJUDE.ORG
Mon Dec 10 18:16:00 PST 2012


I have two .pdb files on hand. Both are in between two biologically relevant conformations. When I create a morph between them, I can see them permuting between the two crystal structures but only half way to the two relevant conformations.

The morphing model should generate a trajectory between the two coordinate sets. Is it possible to let the morphing model generate more coordinate files/frames beyond the target structure?  Let's say 120 frames morph A to B and compute 60-100 more frames beyond B based on the previous trajectories?


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