[Chimera-users] adding pseudo bonds

Elaine Meng meng at cgl.ucsf.edu
Tue May 12 08:39:11 PDT 2009

Hi JD,
The "user interface" (i.e. no programming) way is to create a text  
file listing the desired pseudobonds and their colors and read it in  
with PseudoBond Reader.  The tool and file format are described here:

I don't know the python way, but perhaps looking in the code for  
PseudoBond Reader will help ( share/PBReader/ within your Chimera  
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On May 12, 2009, at 8:19 AM, Jean Didier Pie Marechal wrote:

> Dear all,
> what is the way to add pseubond between metal and chelating atoms?
> if you could tell me what are the "mouse driven" and "script driven"  
> manner I'll be very pleased....
> all the best,
> JD

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