[Chimera-users] sequence viewer

Elaine Meng meng at cgl.ucsf.edu
Mon Jul 13 16:54:43 PDT 2009

Just to chime in on Eric's announcement -- he didn't mention that the  
sequence window preferences have also been expanded and reorganized,  
so that you can save separate "Appearance" preferences for single  
sequences and multiple alignments.  I thought that was important  
because if you *do* want to adjust the spacing or wrapping or font,  
etc. of the single sequence view, this can be saved as a preference  
and it won't affect the appearance of your sequence alignments.

We just adjusted the default spacing of single sequences, so you might  
want to wait one more day to get the daily build to see what we chose  
for defaults.  Otherwise, the many improvements mentioned by Eric are  
in there already.

Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jul 13, 2009, at 4:43 PM, Eric Pettersen wrote:

> Hi all,
> 	I have made my intended improvements to the single-sequence viewer  
> now and the new version is in the daily build (which you can get by  
> going to www.cgl.ucsf.edu/chimera and following the "Daily Builds"  
> link).  I encourage people who use the sequence viewer a lot to  
> fetch the new version and let me know what you like and what you  
> don't.
> --Eric
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu

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