[Chimera-users] coloring protein structure according to Order parameters
meng at cgl.ucsf.edu
Thu Jan 3 10:34:04 PST 2008
It sounds like you want to use "Render by Attribute" to show values
with color. Some attributes are created automatically by Chimera
(for example, atom B-factor or residue hydrophobicity), but you can
also create your own attributes and use this same tool for coloring.
It shows the values in a histogram, and you can adjust the coloring
by moving vertical bars on the histogram and changing their colors.
You can also show values with ball radii and "worm" fatness.
"Render by Attribute" man page:
"rangecolor" command (also does coloring by attribute value):
"Define Attribute" man page (how to create your own attributes):
Basically it reads in a simple text file with your assignments; the
format is described and example files are included.
The "Attributes" tutorial includes examples of using Render by
Attribute and other related tools:
I hope this helps,
Elaine C. Meng, Ph.D. meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
On Jan 3, 2008, at 1:43 AM, rama krishna wrote:
> Dear Friends,
> I need to Paint a protein structure according to generalized
> parameter values.
> Is there any way to do that in UCSF-Chimera.
> Kindly suggest me.
> Dr Ashish Arora Lab,
> Molecular and Structural Biology lab,
> Central Drug Reseach Institute,
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
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