| | 12 | </p> |
| | 13 | |
| | 14 | <p> |
| | 15 | 216. |
| | 16 | <b>Allow mmaker command to work on domains</b><br> |
| | 17 | Tom Goddard<br> |
| | 18 | October 5, 2009<br> |
| | 19 | Want to be able to control which domains are aligned between two homologous |
| | 20 | proteins for measuring relative domain rotations. Could work by simply |
| | 21 | concatenating specified residues to form the sequence for each set of residues. |
| | 22 | A very common case would have the domain specified as a contiguous set of residues |
| | 23 | e.g. #0:25-182 matched to #1:30-190. Another case common case would have the domain |
| | 24 | in two contiguous residue ranges, say #0:25-121,237-294 matched to #1:30-115,318-370. |
| | 25 | </p> |
| | 26 | |
| | 27 | <p> |
| | 28 | 215. |
| | 29 | <b>Make turn command able to move parts of molecules</b><br> |
| | 30 | Tom Goddard<br> |
| | 31 | October 5, 2009<br> |
| | 32 | Allow turn command to move parts of molecules, for instance moving one domain |
| | 33 | relative to another in a hinge motion for fitting. |