Changes between Version 22 and Version 23 of changelog

Timestamp:

Nov 22, 2010, 2:52:35 PM (15 years ago)

Author:

goddard

Comment:

--

changelog

@@ -10 +10 @@
 date and Chimera version when the change was checked in, and who made the
 change (TG = Tom Goddard, AL = Andrew Ling).
+
+<p><b>November 18, 2010</b></p>
+<ul type=None>
+<li><p>Fixed center of rotation command when only bond selected.
+</ul>
+
+<p><b>November 17, 2010</b></p>
+<ul type=None>
+<li><p>Added memory error check in benchmark scene drawing.
+</ul>
+
+<p><b>November 16, 2010</b></p>
+<ul type=None>
+<li><p>Added mean and standard deviation density calc for segmentation regions.
+<li><p>Allowed fractional step in volume planes.
+</ul>
+
+<p><b>November 15, 2010</b></p>
+<ul type=None>
+<li><p>Fixed context help crash on mac, removed menu entry.
+<li><p>Added warning for invalid cell angles in mrc file.
+</ul>
+
+<p><b>November 12, 2010</b></p>
+<ul type=None>
+<li><p>Added volume flattening divide method, applied to termite gut.
+</ul>
+
+<p><b>November 10, 2010</b></p>
+<ul type=None>
+<li><p>Improved attribute table and orthoslice viewing.
+</ul>
+
+<p><b>November 9, 2010</b></p>
+<ul type=None>
+<li><p>Worked around netcdf volume reading bug, ScientificPython.
+</ul>
+
+<p><b>November 5, 2010</b></p>
+<ul type=None>
+<li><p>Added segment sliceview command to make montage images.
+<li><p>Added resize capability to segmentation image viewer.
+<li><p>Fixed pick blobs error when everything is clipped.
+<li><p>Fixed tiling order in orthoslice script, termite gut montages.
+<li><p>Added fill order option to vop tile command.
+</ul>
+
+<p><b>November 3, 2010</b></p>
+<ul type=None>
+<li><p>Made measure contactarea ignore outline boxes.
+</ul>
+
+<p><b>November 2, 2010</b></p>
+<ul type=None>
+<li><p>Improved measure contact area patch smoothness.
+<li><p>Added new color patterns for color by direction.
+<li><p>Added vop tile operation to make section image montages.
+</ul>
+
+<p><b>November 1, 2010</b></p>
+<ul type=None>
+<li><p>Fixed error reporting to include callback info.
+<li><p>Added segment directioncolor command.
+</ul>
+
+<p><b>October 29, 2010</b></p>
+<ul type=None>
+<li><p>Added measure distance command.
+</ul>
+
+<p><b>October 28, 2010</b></p>
+<ul type=None>
+<li><p>Fixed segmentation attribute table error for closed segmentation.
+</ul>
+
+<p><b>October 27, 2010</b></p>
+<ul type=None>
+<li><p>Implemented zone command.
+</ul>
+
+<p><b>October 26, 2010</b></p>
+<ul type=None>
+<li><p>Made segmentation attribute table remove unused columns.
+</ul>
+
+<p><b>October 22, 2010</b></p>
+<ul type=None>
+<li><p>Fixed morph map hang.
+</ul>
+
+<p><b>October 19, 2010</b></p>
+<ul type=None>
+<li><p>Debugged and fixed ScientificPython netcdf bindings code, 64-bit Windows.
+</ul>
+
+<p><b>October 11, 2010</b></p>
+<ul type=None>
+<li><p>Made mouse segmentation avoid showing all watershed regions.
+</ul>
+
+<p><b>October 6, 2010</b></p>
+<ul type=None>
+<li><p>Added measure command contact area operation.
+<li><p>Made contact area account for partial triangles.
+</ul>
+
+<p><b>October 5, 2010</b></p>
+<ul type=None>
+<li><p>Improved error message when fetch from emdb fails.
+<li><p>Fixed tube and ribbon shape ignoring specfied color with follow bonds.
+</ul>
+
+<p><b>October 4, 2010</b></p>
+<ul type=None>
+<li><p>Fixed shape tube followbonds option, ribbon band coloring.
+<li><p>Fixed multiscale colors, made 64-bit same as 32-bit.
+</ul>
+
+<p><b>October 1, 2010</b></p>
+<ul type=None>
+<li><p>Added images to region attribute table and segmentation files.
+<li><p>Added error handling when map size wrong when masking to region.
+</ul>
+
+<p><b>September 30, 2010</b></p>
+<ul type=None>
+<li><p>Added exporting region attributes as comma separated values.
+<li><p>Implemented read and write of segmentation region attributes in hdf5.
+<li><p>Simplified region attribute filter syntax, no more function calls.
+</ul>
+
+<p><b>September 29, 2010</b></p>
+<ul type=None>
+<li><p>Made measure spine region attributes appear in region list.
+<li><p>Fixed sym command bug, two models for coord sys arg.
+<li><p>Added filtering to region attribute list.
+</ul>
+
+<p><b>September 28, 2010</b></p>
+<ul type=None>
+<li><p>Made segmentation attribute browser using sortable table.
+</ul>
+
+<p><b>September 27, 2010</b></p>
+<ul type=None>
+<li><p>Checked in ribbon slice and curvature code.
+</ul>
+
+<p><b>September 24, 2010</b></p>
+<ul type=None>
+<li><p>Updated segger in chimera, segment unbin and show all fixes.
+</ul>
+
+<p><b>September 23, 2010</b></p>
+<ul type=None>
+<li><p>Fixed headless chimera movie recording.
+</ul>
+
+<p><b>September 22, 2010</b></p>
+<ul type=None>
+<li><p>Added curvature measurement to measure spine calculation.
+<li><p>Implemented shape ribbon command to show bacteria center slices.
+</ul>
+
+<p><b>September 21, 2010</b></p>
+<ul type=None>
+<li><p>Added rectangle to shape command.
+<li><p>Added connection failed error message, fit pdbs from emdb web service.
+<li><p>Fixed byte order of machst in mrc files written by chimera.
+<li><p>Made mac use immediate mode surf rendering for small surface pieces.
+</ul>
+
+<p><b>September 17, 2010</b></p>
+<ul type=None>
+<li><p>Fixed segment unbin so it shows region surfaces.
+</ul>
+
+<p><b>September 15, 2010</b></p>
+<ul type=None>
+<li><p>Fixed natural spline with single point, caused fly error.
+<li><p>Fixed bug where mask ijk to xyz transform wrong when map closed.
+<li><p>Fixed fit to segments closed mol, list reg number, transpar bugs.
+</ul>
+
+<p><b>September 14, 2010</b></p>
+<ul type=None>
+<li><p>Fixed fit to segments save fits menu entry.
+</ul>
+
+<p><b>September 13, 2010</b></p>
+<ul type=None>
+<li><p>Better error message when unable to write marker file.
+<li><p>Fixed emdb fetch error causing hang.
+<li><p>Fixed volume dialog session save with 2-d image stack.
+<li><p>Fixed multiscale bug deleting chains.
+<li><p>Fixed volume tracer bug opening marker set.
+</ul>
 
 <p><b>August 27, 2010</b></p>