Changes between Version 20 and Version 21 of changelog


Ignore:
Timestamp:
Jun 29, 2010, 6:13:26 PM (16 years ago)
Author:
goddard
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • changelog

    v20 v21  
    1111change (TG = Tom Goddard, AL = Andrew Ling).
    1212
     13
     14<p><b>June 29, 2010</b></p>
     15<ul type=None>
     16<li><p>Fixed two bugs in fit to segments, neg corr, molmap replace
     17</ul>
     18
     19<p><b>June 25, 2010</b></p>
     20<ul type=None>
     21<li><p>Improved imod seg file reader error message for non-IMOD files
     22<li><p>Made render-by-attribute dialog handle segmentation regions
     23</ul>
     24
     25<p><b>June 23, 2010</b></p>
     26<ul type=None>
     27<li><p>Fixed solid volume memory leak, Solid.matrix held reference
     28<li><p>Made flatten filter use 64-bit float, needed for large maps
     29<li><p>Added measure spine command to compute bacteria paths and lengths
     30</ul>
     31
     32<p><b>June 22, 2010</b></p>
     33<ul type=None>
     34<li><p>Made masking to regions handle full res maps with binned masks
     35</ul>
     36
     37<p><b>June 21, 2010</b></p>
     38<ul type=None>
     39<li><p>Fixed dbpuppet ac_key_error messages, Laura Morris
     40<li><p>Implemented natural cubic spline, smoother than Overhauser spline
     41<li><p>Added vop unbend operation, straighten bacteria
     42<li><p>Wrote code to trace spine of bacteria automatically
     43</ul>
     44
     45<p><b>June 17, 2010</b></p>
     46<ul type=None>
     47<li><p>Wrote code to unbend volume along path for straightening bacteria
     48</ul>
     49
     50<p><b>June 1, 2010</b></p>
     51<ul type=None>
     52<li><p>Made segment mouse click on background show only ungrouped regions
     53</ul>
     54
     55<p><b>June 14, 2010</b></p>
     56<ul type=None>
     57<li><p>Fixed cocoa open dialog nsscroller mouse click crashes
     58<li><p>Added segger to chimera distribution
     59</ul>
     60
     61<p><b>June 10, 2010</b></p>
     62<ul type=None>
     63<li><p>Added "3d" shortcut to toggle between sequential stereo and mono
     64</ul>
     65
     66<p><b>June 2, 2010</b></p>
     67<ul type=None>
     68<li><p>Fixed region delete bug in segment map
     69<li><p>Added flatten operation to volume filter dialog and vop command
     70<li><p>Improved mouse segmentation grouping to avoid start of drag abrupt group size change
     71</ul>
     72
     73<p><b>June 1, 2010</b></p>
     74<ul type=None>
     75<li><p>Added gui for enabling segment grouping mouse mode
     76<li><p>Added ability to read old segger 1.4 regions files
     77</ul>
     78
     79<p><b>May 28, 2010</b></p>
     80<ul type=None>
     81<li><p>Fixed mac universal build, tcltk docs not installed for debug version
     82<li><p>Added menu entries to show grouped and ungrouped segmentation surfaces
     83<li><p>Improved measure and color blobs to report sizes, boundary lengths
     84</ul>
     85
     86<p><b>May 27, 2010</b></p>
     87<ul type=None>
     88<li><p>Allowed mouse mode grouping of single regions for blocking growth
     89<li><p>Made segment command to group regions using a second segmentation
     90<li><p>Fixed surface model front center, not ignoring hidden surface pieces
     91</ul>
     92
     93<p><b>May 26, 2010</b></p>
     94<ul type=None>
     95<li><p>Made segmentation mouse mode detect clicked mask region, not density
     96<li><p>Made seg mouse mode show contacting regions after changing a region
     97<li><p>Added boundary region selection to find unclipped bacteria
     98</ul>
     99
     100<p><b>May 21, 2010</b></p>
     101<ul type=None>
     102<li><p>Made mac ppc install debugging tcltk to avoid start-up crash
     103</ul>
     104
     105<p><b>May 19, 2010</b></p>
     106<ul type=None>
     107<li><p>Made linux spacenavigator not print "connect error" to shell
     108<li><p>Made connectivity mouse mode make region groups that can be saved
     109</ul>
     110
     111<p><b>May 13, 2010</b></p>
     112<ul type=None>
     113<li><p>Fixed tix combobox menu behind dialog on cocoa
     114<li><p>Fixed error deleting coord sys model during move command
     115</ul>
     116
     117<p><b>May 12, 2010</b></p>
     118<ul type=None>
     119<li><p>Made debug graphics dialog not appear for new chimera version
     120<li><p>Separated segger into separate segmentation and fitting dialogs
     121</ul>
     122
     123<p><b>May 11, 2010</b></p>
     124<ul type=None>
     125<li><p>Fixed cocoa inactive menus not gray, tk_setPalette cocoa tk bug
     126</ul>
     127
     128<p><b>May 10, 2010</b></p>
     129<ul type=None>
     130<li><p>Made all chimera builds use tk 8.6
     131<li><p>Eliminated mac carbon builds
     132</ul>
     133
     134<p><b>May 5, 2010</b></p>
     135<ul type=None>
     136<li><p>Made segger group and ungroup buttons change smoothing levels if nothing selected
     137<li><p>Allowed small region removal after segmenting
     138</ul>
     139
     140<p><b>May 4, 2010</b></p>
     141<ul type=None>
     142<li><p>Added density map surface coloring by segmentation region
     143</ul>
     144
     145<p><b>May 3, 2010</b></p>
     146<ul type=None>
     147<li><p>Worked around ctrl double click atom in graphics not showing menu, Eric
     148</ul>
     149
     150<p><b>April 29, 2010</b></p>
     151<ul type=None>
     152<li><p>Fixed segger minimum region size option
     153<li><p>Made changing segger "max regions to display" have immediate effect
     154</ul>
     155
     156<p><b>April 28, 2010</b></p>
     157<ul type=None>
     158<li><p>Optimized segger segmentation speed, about 5x speed-up
     159<li><p>Changed segger hdf5 file format for faster read and write, smaller file
     160</ul>
     161
     162<p><b>April 27, 2010</b></p>
     163<ul type=None>
     164<li><p>Made watershed segmentation use 26 neighbors for local maxima instead of 6
     165<li><p>Added surface granularity parameter to segger
     166</ul>
     167
     168<p><b>April 23, 2010</b></p>
     169<ul type=None>
     170<li><p>Preserved colors when using skeletons to edit a segmentation
     171</ul>
     172
     173<p><b>April 21, 2010</b></p>
     174<ul type=None>
     175<li><p>Made segger read and write segmentation hdf5 file format
     176<li><p>Fixed eman hdf reader, pixel size
     177</ul>
     178
     179<p><b>April 19, 2010</b></p>
     180<ul type=None>
     181<li><p>Eliminated intel and ppc processor-specific mac daily builds from download page
     182</ul>
     183
     184<p><b>April 16, 2010</b></p>
     185<ul type=None>
     186<li><p>Sped up segger grouping by adding track to maximum routine to _segment module
     187<li><p>Avoided creating segger region surfaces unless needed.
     188</ul>
     189
     190<p><b>April 15, 2010</b></p>
     191<ul type=None>
     192<li><p>Fixed linux space nav support, libspnav.so was not distributed
     193</ul>
     194
     195<p><b>April 14, 2010</b></p>
     196<ul type=None>
     197<li><p>Made segger use new C++ module _segment for watershed calculation eliminating need for temporary file
     198</ul>
     199
     200<p><b>April 13, 2010</b></p>
     201<ul type=None>
     202<li><p>Made transform coordinates dialog work with non-molecules
     203<li><p>Added skeleton routines and menu to segger
     204</ul>
     205
     206<p><b>April 6, 2010</b></p>
     207<ul type=None>
     208<li><p>Fixed bug in volume filter casting int16 -> uint16 bug where all values became 65535
     209<li><p>Fixed wrong normals when contouring unsigned data
     210<li><p>Made segger filtering small regions use connected size
     211</ul>
     212
     213<p><b>March 29, 2010</b></p>
     214<ul type=None>
     215<li><p>Fixed fetch directory preference not saving, was requiring Enter key press
     216</ul>
     217
     218<p><b>March 25, 2010</b></p>
     219<ul type=None>
     220<li><p>Fixed bug where center-of-view rotation not updating
     221</ul>
    13222
    14223<p><b>March 17, 2010. Version 1.5</b></p>