Changes between Version 16 and Version 17 of changelog


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Timestamp:
Mar 23, 2010, 6:11:54 PM (16 years ago)
Author:
goddard
Comment:

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  • changelog

    v16 v17  
    1010date and Chimera version when the change was checked in, and who made the
    1111change (TG = Tom Goddard, AL = Andrew Ling).
     12
     13
     14<p><b>March 17, 2010. Version 1.5</b></p>
     15<ul type=None>
     16<li><p>Fixed front-center to not move center during rotation.
     17<li><p>Made opening pdb on command-line look for compressed local files.
     18<li><p>Made opening python scripts not clear globals when finished.
     19<li><p>Made turn keyword center accept "view", "models", "front".
     20<li><p>Disabled silhouette outline drawing for volumetric rendering.
     21</ul>
     22
     23<p><b>March 16, 2010. Version 1.5</b></p>
     24<ul type=None>
     25<li><p>Worked around cocoa bug unicode arrow keys in entry fields.
     26<li><p>Fixed saxs profile calc to work with more than one molecule.
     27</ul>
     28
     29<p><b>March 15, 2010. Version 1.5</b></p>
     30<ul type=None>
     31<li><p>Made saxs gui give better error if local execution fails.
     32</ul>
     33
     34<p><b>March 9, 2010. Version 1.5</b></p>
     35<ul type=None>
     36<li><p>Put max number of regions to display in segger dialog.
     37<li><p>Fixed segger bug, grouped regions remain displayed.
     38</ul>
     39
     40<p><b>March 8, 2010. Version 1.5</b></p>
     41<ul type=None>
     42<li><p>Fixed arrow key menu shortcuts / cursor motion bug, cocoa.
     43</ul>
     44
     45<p><b>March 5, 2010. Version 1.5</b></p>
     46<ul type=None>
     47<li><p>Made segger not accumulate smoothing when done twice.
     48</ul>
     49
     50<p><b>March 3, 2010. Version 1.5</b></p>
     51<ul type=None>
     52<li><p>Remade segger dialog, added progress/cancel, menu reset, options pane...
     53<li><p>Made segger save of region and map files show a file chooser dialog.
     54</ul>
     55
     56<p><b>March 2, 2010. Version 1.5</b></p>
     57<ul type=None>
     58<li><p>Fixed missing cocoa menu check-marks, tk patch.
     59<li><p>Made pdb personal directories try hierarchical layout.
     60</ul>
     61
     62<p><b>March 1, 2010. Version 1.5</b></p>
     63<ul type=None>
     64<li><p>Added tk cocoa patch to fix option-e crash.
     65</ul>
     66
     67<p><b>February 23, 2010. Version 1.5</b></p>
     68<ul type=None>
     69<li><p>Made default movie recording use variable bit rate, q = 8.
     70<li><p>Debugged and fixed new ffmpeg bit rate in bits/sec instead of Kbits/sec.
     71</ul>
     72
     73<p><b>February 21, 2010. Version 1.5</b></p>
     74<ul type=None>
     75<li><p>Worked around cocoa user interface lock-out on cocoa.
     76</ul>
     77
     78<p><b>February 19, 2010. Version 1.5</b></p>
     79<ul type=None>
     80<li><p>Made close command accept multiple models.
     81<li><p>Fixed reset command to work with now unhashable xform objects.
     82</ul>
     83
     84<p><b>February 18, 2010. Version 1.5</b></p>
     85<ul type=None>
     86<li><p>Made write command allow "#" preceding model number.
     87</ul>
     88
     89<p><b>February 17, 2010. Version 1.5</b></p>
     90<ul type=None>
     91<li><p>Made segger calculate sim map automatically for groups of regions.
     92<li><p>Made measure inertia report center of ellipsoid.
     93</ul>
     94
     95<p><b>February 8, 2010. Version 1.5</b></p>
     96<ul type=None>
     97<li><p>Changed segger to show pastel region colors.
     98<li><p>Fixed segger axes alignment and normal direction.
     99</ul>
     100
     101<p><b>February 5, 2010. Version 1.5</b></p>
     102<ul type=None>
     103<li><p>Included 32-bit / 64-bit info in benchmark submissions.
     104<li><p>Made chimera About dialog report 32-bit or 64-bit.
     105</ul>
     106
     107<p><b>February 4, 2010. Version 1.5</b></p>
     108<ul type=None>
     109<li><p>Added ppc mac cocoa and cocoa universal daily build targets.
     110</ul>
     111
     112<p><b>February 3, 2010. Version 1.5</b></p>
     113<ul type=None>
     114<li><p>Fixed tk cocoa open/save double click by having no default button.
     115<li><p>Made 17 small user interface improvments to segger.
     116</ul>
     117
     118<p><b>February 1, 2010. Version 1.5</b></p>
     119<ul type=None>
     120<li><p>Added error checking in movie record command option values.
     121</ul>
     122
     123<p><b>January 29, 2010. Version 1.5</b></p>
     124<ul type=None>
     125<li><p>Started 64-bit mac daily builds using Tk Cocoa and NSOPENGL.
     126</ul>
     127
     128<p><b>January 22, 2010. Version 1.5</b></p>
     129<ul type=None>
     130<li><p>Made gaussian cube file reader handle skewed data axes.
     131</ul>
     132
     133<p><b>January 20, 2010. Version 1.5</b></p>
     134<ul type=None>
     135<li><p>Fixed movie recorder dialog bug, director not initialized.
     136</ul>
     137
     138<p><b>January 19, 2010. Version 1.5</b></p>
     139<ul type=None>
     140<li><p>Debugged cocoa actions/color menu not showing, images freed while in use.
     141<li><p>Fixed cocoa application menu and wrong dock icon.
     142</ul>
     143
     144<p><b>January 15, 2010. Version 1.5</b></p>
     145<ul type=None>
     146<li><p>Debugged cocoa model panel wrapped text, patched tix.
     147</ul>
     148
     149<p><b>January 13, 2010. Version 1.5</b></p>
     150<ul type=None>
     151<li><p>Added color images to cocoa chimera color menu.
     152<li><p>Fixed model panel scroll down-only, reported aqua tk bug, 2931538.
     153<li><p>Allowed raytrace and supersample movie record options to change.
     154</ul>
     155
     156<p><b>January 12, 2010. Version 1.5</b></p>
     157<ul type=None>
     158<li><p>SAX dialog fixes, raise dialog, remember empty executable pref.
     159</ul>
     160
     161<p><b>January 11, 2010. Version 1.5</b></p>
     162<ul type=None>
     163<li><p>Started making cocoa daily builds with Tk 8.6.
     164</ul>
     165
     166<p><b>January 6, 2010. Version 1.5</b></p>
     167<ul type=None>
     168<li><p>Added progress/cancel to gaussian filter using new task manager.
     169</ul>
     170
     171<p><b>January 5, 2010. Version 1.4.1</b></p>
     172<ul type=None>
     173<li><p>Made side view cap clipped surfaces button only show dialog.
     174<li><p>Made model panel focus button enable near/far clipping.
     175</ul>
     176
     177<p><b>December 21, 2009. Version 1.5</b></p>
     178<ul type=None>
     179<li><p>Optimized gaussian filter to use efficient fft sizes.
     180<li><p>Made gaussian filter not-cyclic wrap, 2x speed penalty.
     181<li><p>Made gaussian filter more memory efficient, compute one plane at a time.
     182</ul>
     183
     184<p><b>December 15, 2009. Version 1.4.1</b></p>
     185<ul type=None>
     186<li><p>Fixed movie recorder dialog size parsing error.
     187</ul>
     188
     189<p><b>December 9, 2009. Version 1.5</b></p>
     190<ul type=None>
     191<li><p>Fixed keyboard shortcuts dialog to list all shortcuts.
     192<li><p>Added filter entry to keyboard shortcut dialog.
     193</ul>
     194
     195<p><b>December 8, 2009. Version 1.5</b></p>
     196<ul type=None>
     197<li><p>Made volume session not precede relative paths with './' or '.\'.
     198</ul>
     199
     200<p><b>December 4, 2009. Version 1.5</b></p>
     201<ul type=None>
     202<li><p>Made shape command default coordinate system use surface model.
     203</ul>
     204
     205<p><b>December 3, 2009. Version 1.5</b></p>
     206<ul type=None>
     207<li><p>Added rotation, qrotation, name arguments to shape command.
     208<li><p>Added ellipsoid to shape command.
     209</ul>
     210
     211<p><b>November 25, 2009. Version 1.5</b></p>
     212<ul type=None>
     213<li><p>Removed phantom force feedback tool from distribution.
     214</ul>
     215
     216<p><b>November 24, 2009. Version 1.5</b></p>
     217<ul type=None>
     218<li><p>Made top view mode of side view dialog always show focal plane.
     219<li><p>Fixed focal plane behind eye black-out bug.
     220<li><p>Added movement mouse mode to structure editing menu.
     221</ul>
     222
     223<p><b>November 23, 2009. Version 1.4</b></p>
     224<ul type=None>
     225<li><p>Made dialog auto-placement not override session restore placement.
     226<li><p>Made session restore not place dialogs off-screen.
     227</ul>
     228
     229<p><b>November 20, 2009. Version 1.4</b></p>
     230<ul type=None>
     231<li><p>Fixed aqua menu response by delaying menu post by 1 msec.
     232</ul>
     233
     234<p><b>November 17, 2009. Version 1.4</b></p>
     235<ul type=None>
     236<li><p>Fixed front-center rotation updating too often.
     237<li><p>Fixed morph map on volume subregion.
     238</ul>
     239
     240<p><b>November 8, 2009. Version 1.4</b></p>
     241<ul type=None>
     242<li><p>Added use new plot window option to saxs dialog, default false.
     243<li><p>Added mw molecular weight shortcut.
     244</ul>
     245
     246<p><b>November 6, 2009. Version 1.4</b></p>
     247<ul type=None>
     248<li><p>Fixed uninitialized memory errors, no init of surfnet grid.
     249</ul>
     250
     251<p><b>November 3, 2009. Version 1.4</b></p>
     252<ul type=None>
     253<li><p>Added Linux space navigator support.
     254</ul>
     255
     256<p><b>November 2, 2009. Version 1.4</b></p>
     257<ul type=None>
     258<li><p>Fixed morph map error when volume closed during playback
     259</ul>
     260
     261<p><b>October 30, 2009. Version 1.5</b></p>
     262<ul type=None>
     263<li><p>Added fit in map correlation about zero option, the default.
     264<li><p>Made meshmol command produce model with new id number.
     265</ul>
     266
     267<p><b>October 28, 2009. Version 1.5</b></p>
     268<ul type=None>
     269<li><p>Added msms warning message for wrong number of atom areas.
     270<li><p>Optimized memory use in resampling maps.
     271</ul>
     272
     273<p><b>October 16, 2009. Version 1.4</b></p>
     274<ul type=None>
     275<li><p>Made fit map gray out optimize and whole molecule options when not avail.
     276</ul>
     277
     278<p><b>October 15, 2009. Version 1.4</b></p>
     279<ul type=None>
     280<li><p>Removed SAXS module.
     281<li><p>Removed volume processing standalone programs from distribution.
     282</ul>
    12283
    13284</p>