| | 14 | <p><b>October 1, 2009. Version 1.4</b></p> |
| | 15 | <ul type=None> |
| | 16 | <li><p>Made vrml models not use glossy shader, avoids black vrml objects. |
| | 17 | </ul> |
| | 18 | |
| | 19 | <p><b>September 30, 2009. Version 1.4</b></p> |
| | 20 | <ul type=None> |
| | 21 | <li><p>Fixed glossy lighting fog so alpha is not used. Needed so that |
| | 22 | 100% transparent surfaces are invisible. |
| | 23 | <li><p>Added showSlabs option to measure rotation command. |
| | 24 | <li><p>Improved file fetch error on socket errors which are not IOError. |
| | 25 | <li><p>Added relativeXform option to matrixcopy to fix misaligned sessions. |
| | 26 | <li><p>Made session merging align old and new lowest id models. |
| | 27 | </ul> |
| | 28 | |
| | 29 | <p><b>September 29, 2009. Version 1.4</b></p> |
| | 30 | <ul type=None> |
| | 31 | <li><p>Added update keyword to sym command, default false. |
| | 32 | <li><p>Added toggle outline box shortcut "ob". |
| | 33 | </ul> |
| | 34 | |
| | 35 | <p><b>September 28, 2009. Version 1.4</b></p> |
| | 36 | <ul type=None> |
| | 37 | <li><p>Made selection object model order follow vertex order. Allows |
| | 38 | vop add command to get correct model order. |
| | 39 | <li><p>Fixed surface zone session restore bug with molecular surfaces. |
| | 40 | <li><p>Added minRMS option to vop subtract for subtracting fit maps. |
| | 41 | <li><p>Made vop subtract operation use interpolation like vop add. |
| | 42 | </ul> |
| | 43 | |
| | 44 | <p><b>September 25, 2009. Version 1.4</b></p> |
| | 45 | <ul type=None> |
| | 46 | <li><p>Made vop add not extend grid due to round-off if grids are identical. |
| | 47 | <li><p>Added multipliers arg to vop add. |
| | 48 | <li><p>Made open viper:1bbt fetch from viperdb instead of pdb. |
| | 49 | </ul> |
| | 50 | |
| | 51 | <p><b>September 18, 2009. Version 1.4</b></p> |
| | 52 | <ul type=None> |
| | 53 | <li><p>Made ~surf command close molecular surfaces with closed molecules. |
| | 54 | </ul> |
| | 55 | |
| | 56 | <p><b>September 17, 2009. Version 1.4</b></p> |
| | 57 | <ul type=None> |
| | 58 | <li><p>Fixed fit in map, with simulated map didn't move atoms. |
| | 59 | <li><p>Made measure buriedarea report buried areas for both atom sets. |
| | 60 | </ul> |
| | 61 | |
| | 62 | <p><b>September 16, 2009. Version 1.4</b></p> |
| | 63 | <ul type=None> |
| | 64 | <li><p>Made mz shortcut place marker at origin in selected models local coords. |
| | 65 | <li><p>Added center and axis arguments to sym command. |
| | 66 | </ul> |
| | 67 | |
| | 68 | <p><b>September 15, 2009. Version 1.4</b></p> |
| | 69 | <ul type=None> |
| | 70 | <li><p>Added symmetry group argument to sym command. |
| | 71 | </ul> |
| | 72 | |
| | 73 | <p><b>September 14, 2009. Version 1.4</b></p> |
| | 74 | <ul type=None> |
| | 75 | <li><p>Improved color zone out-of-memory error message. |
| | 76 | </ul> |
| | 77 | |
| | 78 | <p><b>September 11, 2009. Version 1.4</b></p> |
| | 79 | <ul type=None> |
| | 80 | <li><p>Added move molecule mouse mode. |
| | 81 | </ul> |
| | 82 | |
| | 83 | <p><b>September 10, 2009. Version 1.4</b></p> |
| | 84 | <ul type=None> |
| | 85 | <li><p>Implemented vop cover operation for periodic map extension. |
| | 86 | </ul> |
| | 87 | |
| | 88 | <p><b>September 9, 2009. Version 1.4</b></p> |
| | 89 | <ul type=None> |
| | 90 | <li><p>Fixed vanishing surface cap on Windows. |
| | 91 | </ul> |
| | 92 | |
| | 93 | <p><b>September 7, 2009. Version 1.4</b></p> |
| | 94 | <ul type=None> |
| | 95 | <li><p>Fixed pseudobondgroup bounding box calculation, wrong coordinate system. |
| | 96 | <li><p>Added playDirection, playRange and addMode options to vop morph command. |
| | 97 | <li><p>Fixed front-center, was using mid-depth even when model intercepted. |
| | 98 | <li><p>Fixed color parsing error in measure inertia. |
| | 99 | </ul> |
| | 100 | |
| | 101 | <p><b>September 4, 2009. Version 1.4</b></p> |
| | 102 | <ul type=None> |
| | 103 | <li><p>Added vop morph command. |
| | 104 | <li><p>Added number of cells option to unit cell dialog. |
| | 105 | <li><p>Made unit cell outline button toggle outline off. |
| | 106 | </ul> |
| | 107 | |
| | 108 | <p><b>September 3, 2009. Version 1.4</b></p> |
| | 109 | <ul type=None> |
| | 110 | <li><p>Added options panel to unit cell dialog. |
| | 111 | </ul> |
| | 112 | |
| | 113 | <p><b>September 2, 2009. Version 1.4</b></p> |
| | 114 | <ul type=None> |
| | 115 | <li><p>Made unit cell dialog handle inverting symmetries. |
| | 116 | </ul> |
| | 117 | |
| | 118 | <p><b>August 31, 2009. Version 1.4</b></p> |
| | 119 | <ul type=None> |
| | 120 | <li><p>Made marker note labels set using actions label menu save in sessions. |
| | 121 | <li><p>Fixed bug where deleting marker did not delete residue. |
| | 122 | <li><p>Fixed split map by color bug, numpy array in sessions. |
| | 123 | </ul> |
| | 124 | |
| | 125 | <p><b>August 25, 2009. Version 1.4</b></p> |
| | 126 | <ul type=None> |
| | 127 | <li><p>Added command "set light_quality glossy|normal". |
| | 128 | </ul> |
| | 129 | |
| | 130 | <p><b>August 24, 2009. Version 1.4</b></p> |
| | 131 | <ul type=None> |
| | 132 | <li><p>Made surface color dialog show offset field only for electrostatics. |
| | 133 | </ul> |
| | 134 | |
| | 135 | <p><b>August 21, 2009. Version 1.4</b></p> |
| | 136 | <ul type=None> |
| | 137 | <li><p>Translated mesh subdivision python to c++ for faster calculation. |
| | 138 | <li><p>Made error dialog not report full traceback, just a few lines. |
| | 139 | <li><p>Fixed shape command color parsing, was generating an error. |
| | 140 | <li><p>Made surface zone and color zone save arrays as strings in session files. |
| | 141 | <li><p>Fixed shape command, was adding to existing surface when none specified. |
| | 142 | </ul> |