Changes between Version 11 and Version 12 of changelog

Timestamp:

Aug 4, 2009, 12:46:12 PM (17 years ago)

Author:

goddard

Comment:

--

changelog

@@ -12 +12 @@
 </p>
 
-<p>
-Ideally this log would record all changes, but we are currently seeing
-how difficult it is to keep it up to date.
-</p>
+<p><b>August 3, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed volume outline box to avoid coloring and capping.
+<li><p>Made volume flip normals for thresholds less than 0 default off.
+<li><p>Added tile command.
+<li><p>Made volume save command handle multifile save with %d index.
+</ul>
+
+<p><b>July 31, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed subsampled grid data caching, caused blank histogram display.
+<li><p>Added vop boxes operation to extract subregions around markers.
+</ul>
+
+<p><b>July 29, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made volume tracer work without graphical user interface.
+<li><p>Added vop median and scale filter operations.
+</ul>
+
+<p><b>July 28, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Replaced vop and volume command use_step/use_subregion arguments with step/subregion.
+<li><p>Fixed imod reader bug, error reading point size records.
+</ul>
+
+<p><b>July 24, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added measure inertia command for molecules and surfaces.
+</ul>
+
+<p><b>July 22, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made scale filter clamp integer values to data type limits.
+<li><p>Changed frame update timers to assure minimum event processing time.  Prevents some lock-outs during continuous rendering on aqua.
+<li><p>Fixed broken mask command.
+<li><p>Made mask command ignore masked parts of surface.
+</ul>
+
+<p><b>July 21, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made molmap accept a # character in the modelId argument.
+</ul>
+
+<p><b>July 20, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed binning filter step size bug.
+</ul>
+
+<p><b>July 17, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Changed vop syntax, operation first arg, rejects invalid keywords.
+<li><p>Fixed meshmol bug, error due to obsolete volume tracer call.
+</ul>
+
+<p><b>July 16, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made session saving eliminate indent on long lists, smaller file size.
+<li><p>Fixed emdb fetch bug where xml and web service used when not needed.
+</ul>
+
+<p><b>July 15, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed bug in vop permute, permutation incorrect.
+</ul>
+
+<p><b>July 14, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added vop add command.
+<li><p>Added useGridStep, useGridSubregion, boundingGrid vop resample options.
+<li><p>Made volumes with unicode filenames open.
+</ul>
+
+<p><b>July 13, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added set/reset and cumulative transform to molecule transform dialog.
+<li><p>Updated to pytables 2.1.1 to allow reading Chimera map format files with unicode file names.
+</ul>
+
+<p><b>July 10, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made fit in map only use displayed subregion when counting points outside contour.
+</ul>
+
+<p><b>June 23, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed non-orthogonal rotation errors in reading profec volume maps.
+<li><p>Fixed gross memory inefficiency writing map file.  Was reading a full copy of map for every plane for formats that could not read submaps.
+<li><p>Made mouse rotation virtual sphere center be the model center of rotation.
+</ul>
+
+<p><b>June 22, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed incorrect default center for scolor command.
+</ul>
+
+<p><b>June 19, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed per-pixel surface color bugs with transparent surfaces.
+<li><p>Implemented scolor command for surface color dialog functionality.
+</ul>
+
+<p><b>June 18, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed surface transparency color hierarchy problems.
+</ul>
+
+<p><b>June 17, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added frames argument to surftransparency command.
+<li><p>Made surftransparency command work on non-msms surfaces.
+</ul>
+
+<p><b>June 12, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Fixed session save error with empty marker set.
+</ul>
+
+<p><b>June 10, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added bin operation to vop command.
+</ul>
+
+<p><b>June 9, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Implemented volume binning filter.
+<li><p>Made per-pixel surface color use colormap end values instead of black.
+<li><p>Fixed per-pixel surface color lighting.
+</ul>
+
+<p><b>June 5, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made pick blobs and volume tracer work with per-model clipped surfaces.
+</ul>
+
+<p><b>June 4, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added volume tracer mouse mode for marker placement on surfaces.
+<li><p>Put each volume tracer marker in its own residue to allow specifying
+numeric ranges in commands.
+</ul>
+
+<p><b>June 3, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added mask command invertMask option.
+<li><p>Added caps argument to shape command for cylinder caps.
+</ul>
+
+<p><b>June 2, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made copy/paste work in aqua for bug report dialog "gathered info" field.
+<li><p>Fixed morph map movie record bug, backslash t in file interpreted as tab.
+</ul>
+
+<p><b>May 29, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Added per pixel coloring to surface color dialog using textures.
+<li><p>Made surface textures support luminance and border colors.
+<li><p>Updated function names for emdb web service search.
+</ul>
+
+<p><b>May 27, 2009.  Version 1.4</b></p>
+<ul type=None>
+<li><p>Made transparent texture coloring of surfaces work.
+<li><p>Added texture coloring to surface color dialog.
+<li><p>Fixed bug where 3d texture not updated when color mode changed.
+<li><p>Fixed bug where volume color mode not updated when switching between 2d and 3d solid style.
+</ul>
+
+
 <p><b>May 20, 2009.  Version 1.4</b></p>