id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9966 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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California. All rights reserved. How to cite UCSF ChimeraX > open /Users/d579i177/Downloads/cryosparc_P24_J324_008_volume_map_sharp.mrc Opened cryosparc_P24_J324_008_volume_map_sharp.mrc as #1, grid size 224,224,224, pixel 1.18, shown at level 0.0471, step 1, values float32 > open /Users/d579i177/Downloads/cryosparc_P24_J322_007_volume_map_sharp.mrc Opened cryosparc_P24_J322_007_volume_map_sharp.mrc as #2, grid size 224,224,224, pixel 1.18, shown at level 0.0499, step 1, values float32 > hide #!2 models > volume #1 level 0.04707 > volume #1 level 0.08781 > volume #1 level 0.274 > volume #2 level 0.1635 > hide #!2 models > hide #!1 models > show #!2 models > volume #2 level 0.2284 > volume #2 level 0.2392 > volume #2 level 0.4936 > volume #2 level 0.3312 > volume #2 level 0.2825 > volume #2 level 0.1581 > show #!1 models > select add #1 2 models selected Drag select of 1 cryosparc_P24_J324_008_volume_map_sharp.mrc , 2 cryosparc_P24_J322_007_volume_map_sharp.mrc > ui mousemode right ""translate selected models"" > view matrix models > #1,1,0,0,-2.0944,0,1,0,5.8697,0,0,1,49.406,#2,1,0,0,-2.0944,0,1,0,5.8697,0,0,1,49.406 Drag select of 1 cryosparc_P24_J324_008_volume_map_sharp.mrc , 2 cryosparc_P24_J322_007_volume_map_sharp.mrc > view matrix models > #1,1,0,0,-82.57,0,1,0,-63.608,0,0,1,-11.116,#2,1,0,0,-82.57,0,1,0,-63.608,0,0,1,-11.116 > view matrix models > #1,1,0,0,-83.642,0,1,0,-47.019,0,0,1,5.4132,#2,1,0,0,-83.642,0,1,0,-47.019,0,0,1,5.4132 > select subtract #1 2 models selected > select add #1 4 models selected > select subtract #1 2 models selected > select add #2 2 models selected > view matrix models #2,1,0,0,-101.94,0,1,0,-96.982,0,0,1,-42.164 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.8789,-0.47569,-0.035241,-18.82,-0.35254,-0.69757,0.62379,96.435,-0.32132,-0.53583,-0.7808,291.21 > view matrix models > #2,-0.70906,0.00045064,0.70515,35.608,-0.67611,-0.28443,-0.67969,245.71,0.20026,-0.9587,0.20198,156.85 > view matrix models > #2,-0.92126,0.30591,0.24021,80.704,-0.16155,0.26084,-0.95177,139.66,-0.35381,-0.91563,-0.19088,272.66 > view matrix models > #2,-0.99654,0.062311,0.054994,145.7,-0.030852,0.33705,-0.94098,111.06,-0.07717,-0.93942,-0.33397,257.11 > view matrix models > #2,-0.98942,0.044543,0.13804,136.84,-0.12138,0.26671,-0.9561,134.14,-0.079404,-0.96275,-0.25848,251.15 > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.98942,0.044543,0.13804,149.3,-0.12138,0.26671,-0.9561,158.61,-0.079404,-0.96275,-0.25848,327.39 > view matrix models > #2,-0.98942,0.044543,0.13804,156.38,-0.12138,0.26671,-0.9561,184.68,-0.079404,-0.96275,-0.25848,316.27 > volume #2 level 0.2122 > ui tool show ""Fit in Map"" > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 22758 points correlation = 0.446, correlation about mean = 0.06374, overlap = 1282 steps = 76, shift = 3.13, angle = 4.59 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.99451999 -0.04577498 -0.09399278 285.97617068 0.07976639 0.24894041 -0.96522847 225.80901907 0.06758192 -0.96743647 -0.24392491 277.24378301 Axis -0.01079041 -0.78960893 0.61351553 Axis point 132.21560236 0.00000000 235.63138989 Rotation angle (degrees) 174.12761427 Shift along axis -11.29325402 > volume #2 level 0.2505 > select add #1 4 models selected > select subtract #1 2 models selected > select subtract #2 Nothing selected > color #1 #bf2010ff models > color #2 #ff07e1ff models > select add #1 2 models selected > view matrix models > #1,0.99688,-0.077165,0.016333,-30.956,0.077378,0.99692,-0.012808,-43.016,-0.015295,0.014032,0.99978,59.688 > volume #2 level 0.2237 > volume #2 level 0.2198 > volume #2 level 0.216 > volume #2 level 0.2122 > volume #2 level 0.2084 > volume #2 level 0.2007 > volume #2 level 0.1969 > volume #2 level 0.193 > view matrix models > #1,0.99688,-0.077165,0.016333,1105.7,0.077378,0.99692,-0.012808,89.144,-0.015295,0.014032,0.99978,353.22 > view matrix models > #1,0.99688,-0.077165,0.016333,55.638,0.077378,0.99692,-0.012808,31.362,-0.015295,0.014032,0.99978,-175.8 > view sel > view matrix models > #1,0.99688,-0.077165,0.016333,-19.336,0.077378,0.99692,-0.012808,-55.343,-0.015295,0.014032,0.99978,-223.56 > view matrix models > #1,0.99688,-0.077165,0.016333,-40.655,0.077378,0.99692,-0.012808,-91.137,-0.015295,0.014032,0.99978,-164.94 > select add #2 6 models selected > select add #1 8 models selected > view sel > select subtract #1 4 models selected > view matrix models > #2,-0.98942,0.044543,0.13804,206.95,-0.12138,0.26671,-0.9561,108.68,-0.079404,-0.96275,-0.25848,237.83 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.99737,0.050873,0.051698,-47.469,-0.057674,0.12403,0.9906,-121.29,0.043982,-0.99097,0.12664,177.6 > view matrix models > #2,-0.7816,-0.35741,-0.51124,312.45,0.36803,-0.92595,0.084672,72.364,-0.50364,-0.12197,0.85526,45.911 > view matrix models > #2,-0.71654,-0.69328,-0.077095,294.49,-0.072338,-0.036076,0.99673,-98.983,-0.69379,0.71977,-0.0243,68.793 > view matrix models > #2,-0.84027,-0.45049,0.30168,232.18,-0.17101,0.74824,0.64101,-145.36,-0.51449,0.48703,-0.70576,159.76 > view matrix models > #2,-0.92214,-0.28482,0.26179,226.15,-0.28508,0.95776,0.037838,-83.358,-0.26151,-0.039739,-0.96438,227.49 > view matrix models > #2,-0.93461,-0.33229,-0.12682,282.04,-0.30661,0.93345,-0.18618,-49.635,0.18025,-0.13512,-0.9743,182.53 > view matrix models > #2,-0.92277,-0.34909,-0.16317,287.17,-0.34877,0.93668,-0.031577,-63.539,0.16386,0.02777,-0.98609,164.69 > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.92277,-0.34909,-0.16317,288.76,-0.34877,0.93668,-0.031577,-78.334,0.16386,0.02777,-0.98609,75.188 > view matrix models > #2,-0.92277,-0.34909,-0.16317,267.52,-0.34877,0.93668,-0.031577,-29.185,0.16386,0.02777,-0.98609,72.554 > view matrix models > #2,-0.92277,-0.34909,-0.16317,275.82,-0.34877,0.93668,-0.031577,-30.054,0.16386,0.02777,-0.98609,70.411 > view matrix models > #2,-0.92277,-0.34909,-0.16317,275.34,-0.34877,0.93668,-0.031577,-24.602,0.16386,0.02777,-0.98609,69.081 > ui mousemode right ""rotate selected models"" > view matrix models > #2,-0.99319,-0.10149,-0.057299,238.99,-0.096818,0.99215,-0.079134,-59.555,0.064881,-0.073047,-0.99522,96.664 > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.99319,-0.10149,-0.057299,235.14,-0.096818,0.99215,-0.079134,-57.674,0.064881,-0.073047,-0.99522,97.58 > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 22758 points correlation = 0.4475, correlation about mean = 0.02427, overlap = 1312 steps = 76, shift = 2.45, angle = 5.47 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.99776240 -0.04595803 0.04855986 263.44695841 -0.05386749 0.98279248 -0.17668402 33.39097784 -0.03960422 -0.17890447 -0.98306902 291.10965494 Axis -0.02507679 0.99568671 -0.08932602 Axis point 135.38221464 0.00000000 144.12248683 Rotation angle (degrees) 177.46251442 Shift along axis 0.63688359 > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 22758 points correlation = 0.4475, correlation about mean = 0.02433, overlap = 1312 steps = 44, shift = 0.00508, angle = 0.0152 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.99777877 -0.04571963 0.04844840 263.43790648 -0.05361405 0.98280024 -0.17671794 33.36334930 -0.03953562 -0.17892292 -0.98306842 291.10237831 Axis -0.02495314 0.99568866 -0.08933882 Axis point 135.36855744 0.00000000 144.12392289 Rotation angle (degrees) 177.46770493 Shift along axis 0.63916330 > volume #2 level 0.1739 > volume #2 level 0.1701 > volume #2 level 0.1624 > volume #2 level 0.1547 > volume #2 level 0.1509 > volume #1 level 0.1669 > select subtract #2 Nothing selected > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 37972 points correlation = 0.4338, correlation about mean = 0.06277, overlap = 1599 steps = 60, shift = 0.0517, angle = 0.363 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.99768804 -0.04450617 0.05135925 262.83711654 -0.05317569 0.98183144 -0.18215206 34.19605820 -0.04231924 -0.18446199 -0.98192813 291.99327762 Axis -0.02454581 0.99544497 -0.09212393 Axis point 135.29337573 0.00000000 144.47105836 Rotation angle (degrees) 177.30303281 Shift along axis 0.68917715 > volume #1 level 0.5706 > hide #!2 models > volume #1 level 0.6859 > show #!2 models > volume #2 level 0.5262 > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 3459 points correlation = 0.4467, correlation about mean = 0.01325, overlap = 390.5 steps = 296, shift = 1.37, angle = 10.2 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.99852518 -0.05136672 0.01757620 268.50704149 -0.05151865 0.99863752 -0.00830322 8.03946645 -0.01712574 -0.00919648 -0.99981105 268.93535850 Axis -0.02573205 0.99965929 -0.00437675 Axis point 135.52444672 0.00000000 133.31968782 Rotation angle (degrees) 179.00547382 Shift along axis -0.04957376 > volume #1 level 0.2081 > volume #1 level 0.2658 > volume #2 level 0.2084 > view > hide #!1 models > volume #2 level 0.3309 > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > select add #1 2 models selected > view matrix models > #1,0.99793,-0.049807,0.040675,-48.948,0.046916,0.9965,0.069179,-92.976,-0.043978,-0.067128,0.99677,-150.05 > undo > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.88945,0.30132,0.34364,-121.77,-0.45702,0.59263,0.66326,-58.35,-0.0037961,-0.74699,0.66483,-22.504 > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > view matrix models > #1,0.93807,0.31195,0.15069,-103.1,-0.32024,0.61489,0.72067,-87.238,0.13215,-0.72429,0.67671,-45.088 > show #!2 models > color #1 #06bd04ff models > color #1 #06bd048d models > color #1 #06bd048a models > view matrix models > #1,0.92493,0.32963,-0.18937,-57.019,-0.086061,0.66677,0.74027,-127.72,0.37028,-0.6684,0.64508,-79.593 > view matrix models > #1,0.89129,-0.45048,-0.05172,32.301,0.3849,0.69133,0.61148,-175.43,-0.23971,-0.56491,0.78957,-32.737 > view matrix models > #1,0.93506,-0.3081,-0.1753,24.555,0.32658,0.55645,0.76401,-170.74,-0.13784,-0.77164,0.62094,4.4863 > view matrix models > #1,0.93725,-0.2794,-0.20857,25.016,0.33909,0.5912,0.73178,-172.59,-0.081146,-0.75658,0.64884,-8.8288 > view matrix models > #1,0.92493,-0.27629,-0.2611,33.442,0.37655,0.5716,0.72903,-174.54,-0.052178,-0.77261,0.63273,-8.304 > view matrix models > #1,0.90209,-0.31626,-0.29362,46.237,0.42759,0.56316,0.70712,-177.14,-0.058276,-0.76344,0.64325,-10.166 > view matrix models > #1,0.9253,-0.30291,-0.22819,32.414,0.37923,0.74387,0.55031,-173.27,0.0030521,-0.59574,0.80317,-62.527 > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 23595 points correlation = 0.4448, correlation about mean = 0.08829, overlap = 1323 steps = 196, shift = 3.44, angle = 2.25 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.94916278 0.22625319 0.21885957 196.79392927 0.30930069 0.79955117 0.51483106 -82.36177656 -0.05850726 0.55635189 -0.82888448 173.49125845 Axis 0.14195409 0.94827942 0.28392811 Axis point 111.29686632 0.00000000 91.44217389 Rotation angle (degrees) 171.59047916 Shift along axis -0.90723045 > view matrix models > #1,0.23333,-0.73861,-0.63247,237.67,0.88438,0.43159,-0.17776,-95.621,0.40427,-0.51787,0.75391,-117.09 > view matrix models > #1,0.74455,-0.56932,-0.34859,108.72,0.66716,0.61641,0.41826,-173.4,-0.023256,-0.54398,0.83878,-68.878 > view matrix models > #1,0.75778,-0.63395,-0.15453,88.926,0.64484,0.69138,0.32584,-167.74,-0.099727,-0.34656,0.93271,-97.956 > view matrix models > #1,0.90365,-0.41202,-0.11684,34.984,0.39142,0.90529,-0.16505,-95.359,0.17378,0.10341,0.97934,-200.3 > view matrix models > #1,0.96544,-0.21294,-0.15027,4.9377,0.19212,0.97108,-0.14175,-81.021,0.17611,0.10798,0.97843,-201.09 > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 23595 points correlation = 0.4615, correlation about mean = 0.04445, overlap = 1376 steps = 152, shift = 2.26, angle = 21.3 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.99641842 0.07991659 -0.02763485 257.12845015 0.07788091 0.99462609 0.06821663 -19.57023775 0.03293798 0.06582008 -0.99728773 249.18596588 Axis -0.03951158 -0.99865531 -0.03356202 Axis point 127.05885415 0.00000000 126.87470999 Rotation angle (degrees) 178.26211340 Shift along axis 1.02118443 > view matrix models > #1,0.99306,-0.11724,0.009506,-33.803,0.11682,0.99247,0.03688,-101.58,-0.013758,-0.035513,0.99927,-158.91 > view matrix models > #1,0.98564,-0.14985,0.07782,-37.868,0.11942,0.29282,-0.94868,126.5,0.11937,0.94435,0.30651,-211.7 > view matrix models > #1,0.9882,-0.087465,0.12575,-53.086,0.12439,-0.020857,-0.99201,173.53,0.089389,0.99595,-0.0097311,-171.19 > volume #2 level 0.1356 > volume #1 level 0.1258 > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 48869 points correlation = 0.4265, correlation about mean = 0.1283, overlap = 1735 steps = 104, shift = 5.81, angle = 10.2 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation -0.99512852 0.09113335 -0.03760241 256.39872428 0.04491300 0.07954288 -0.99581914 255.09691425 -0.08776133 -0.99265686 -0.08324846 275.74167758 Axis 0.04631295 0.73460006 -0.67691791 Axis point 123.46197714 0.00000000 252.43086618 Rotation angle (degrees) 178.04352526 Shift along axis 12.61431041 > select add #2 4 models selected > select subtract #1 2 models selected > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points correlation = 0.3957, correlation about mean = 0.1145, overlap = 1553 steps = 124, shift = 3.75, angle = 8.72 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99862812 0.00700006 -0.05189289 269.36586208 0.05135747 -0.06233481 -0.99673305 252.75090117 -0.01021192 -0.99803074 0.06188979 268.97184911 Axis -0.02131502 -0.68462361 0.72858505 Axis point 135.85378622 255.56480254 0.00000000 Rotation angle (degrees) 178.25560165 Shift along axis 17.18809444 > color #1 #06bd04ff models > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points correlation = 0.3958, correlation about mean = 0.1145, overlap = 1553 steps = 48, shift = 0.0236, angle = 0.0252 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99861878 0.00700087 -0.05207215 269.40644059 0.05153221 -0.06273724 -0.99669878 252.76486271 -0.01024462 -0.99800552 0.06228981 268.92270199 Axis -0.02138380 -0.68447594 0.72872177 Axis point 135.87532109 255.50817287 0.00000000 Rotation angle (degrees) 178.24908809 Shift along axis 17.19742911 > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points correlation = 0.3957, correlation about mean = 0.1146, overlap = 1553 steps = 56, shift = 0.0253, angle = 0.0229 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99863242 0.00708716 -0.05179829 269.34256257 0.05125638 -0.06245839 -0.99673052 252.78143599 -0.01029923 -0.99802240 0.06200971 268.97028480 Axis -0.02131126 -0.68457925 0.72862685 Axis point 135.85291484 255.55137188 0.00000000 Rotation angle (degrees) 178.26310424 Shift along axis 17.19001747 > transparency sel 50 > select add #1 4 models selected > select subtract #2 2 models selected > transparency sel 50 > transparency sel 0 > volume sel style surface > volume sel style mesh > volume sel style surface > volume sel style image > volume sel style mesh > volume sel style surface > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points correlation = 0.3958, correlation about mean = 0.1146, overlap = 1553 steps = 44, shift = 0.0247, angle = 0.00825 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99863112 0.00715198 -0.05181434 269.35574988 0.05126706 -0.06258585 -0.99672197 252.78264004 -0.01037138 -0.99801396 0.06213351 268.95784583 Axis -0.02134026 -0.68453292 0.72866953 Axis point 135.86810498 255.52655457 0.00000000 Rotation angle (degrees) 178.26533544 Shift along axis 17.19522523 > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points correlation = 0.3958, correlation about mean = 0.1145, overlap = 1553 steps = 60, shift = 0.00293, angle = 0.0118 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99863369 0.00717416 -0.05176164 269.34479192 0.05121514 -0.06238803 -0.99673704 252.76686986 -0.01038006 -0.99802618 0.06193537 268.98333059 Axis -0.02132713 -0.68460546 0.72860176 Axis point 135.86522397 255.55147574 0.00000000 Rotation angle (degrees) 178.26808931 Shift along axis 17.19179907 > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points correlation = 0.3957, correlation about mean = 0.1146, overlap = 1553 steps = 60, shift = 0.0198, angle = 0.00744 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99863080 0.00709083 -0.05182898 269.34740177 0.05128674 -0.06246187 -0.99672874 252.77574267 -0.01030497 -0.99802216 0.06201268 268.96965265 Axis -0.02132374 -0.68457787 0.72862778 Axis point 135.85602270 255.54955357 0.00000000 Rotation angle (degrees) 178.26205667 Shift along axis 17.19058895 > hide #!2 models > volume #1 change image level -0.009818,0 level 0.04691,0.8 level 1.896,1 > volume #1 level 0.4305 > show #!2 models > volume #2 level 0.4535 > hide #!1 models > volume #2 level 0.3769 > show #!1 models > hide #!2 models > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 9433 points correlation = 0.4524, correlation about mean = 0.09667, overlap = 802.4 steps = 92, shift = 1.34, angle = 8.38 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99913855 -0.00102370 -0.04148612 269.23440571 0.04080270 -0.20656303 -0.97758214 270.19435222 -0.00756875 -0.97843276 0.20642686 249.82134998 Axis -0.01579398 -0.62976907 0.77662183 Axis point 134.70785019 238.72522819 0.00000000 Rotation angle (degrees) 178.45692867 Shift along axis 19.60438563 > show #!2 models > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 9433 points correlation = 0.452, correlation about mean = 0.09628, overlap = 802.1 steps = 44, shift = 0.0198, angle = 0.0183 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.99914536 -0.00074722 -0.04132780 269.16560764 0.04059090 -0.20654201 -0.97759540 270.23268872 -0.00780545 -0.97843744 0.20639582 249.86464373 Axis -0.01581933 -0.62977943 0.77661291 Axis point 134.70622682 238.73695692 -0.00000000 Rotation angle (degrees) 178.47492913 Shift along axis 19.60309970 > view matrix models > #1,0.97806,-0.014685,0.2078,-72.476,0.078459,0.95003,-0.30214,-43.455,-0.19298,0.31182,0.93034,-171.07 > view matrix models > #1,0.97806,-0.014685,0.2078,-79.635,0.078459,0.95003,-0.30214,-43.804,-0.19298,0.31182,0.93034,-169.82 > view matrix models > #1,0.98275,-0.035449,0.18151,-72.152,0.10396,0.91762,-0.38363,-54.135,-0.15296,0.39588,0.90547,-166.79 > view matrix models > #1,0.88938,-0.1204,-0.44102,39.324,0.11983,0.99236,-0.029267,-116.16,0.44118,-0.026818,0.89702,-188.18 > view matrix models > #1,0.88938,-0.1204,-0.44102,46.128,0.11983,0.99236,-0.029267,-99.009,0.44118,-0.026818,0.89702,-201.31 > view matrix models > #1,0.88938,-0.1204,-0.44102,40.543,0.11983,0.99236,-0.029267,-122.81,0.44118,-0.026818,0.89702,-183.63 > view matrix models > #1,0.95898,-0.28334,-0.0083493,-8.1961,0.081378,0.24697,0.9656,-159.62,-0.27153,-0.92667,0.2599,119.52 > view matrix models > #1,0.95898,-0.28334,-0.0083493,-10.786,0.081378,0.24697,0.9656,-167.84,-0.27153,-0.92667,0.2599,139.58 > view matrix models > #1,-0.098897,-0.61528,0.78208,61.264,-0.21827,0.78021,0.5862,-145.21,-0.97086,-0.11273,-0.21146,190.87 > view matrix models > #1,-0.96282,0.066036,0.26193,158.73,0.1578,0.92451,0.34696,-180.2,-0.21925,0.37539,-0.90056,124.32 > view matrix models > #1,-0.89944,0.32091,0.29668,111.74,0.15049,0.86474,-0.47914,-54.676,-0.41032,-0.38631,-0.82608,239.79 > view matrix models > #1,-0.90724,0.26673,-0.32522,207.75,-0.30776,-0.94801,0.081018,166.53,-0.2867,0.17359,0.94216,-100.28 > view matrix models > #1,-0.87022,-0.054131,-0.48968,268.52,0.031365,-0.99802,0.054585,132.08,-0.49166,0.032142,0.87019,-44.332 > view matrix models > #1,-0.65587,-0.26851,-0.70551,299.04,0.55412,-0.80592,-0.20841,74.744,-0.51263,-0.52763,0.67737,59.705 > view matrix models > #1,-0.94955,-0.29226,-0.11373,257.41,0.30464,-0.77351,-0.55576,152.46,0.074456,-0.56237,0.82353,-33.898 > view matrix models > #1,-0.9947,-0.085623,-0.056932,228.03,0.10251,-0.86916,-0.48379,181.66,-0.0080596,-0.48706,0.87333,-39.992 > view matrix models > #1,-0.99339,-0.097902,-0.059936,229.9,0.1147,-0.86733,-0.48435,179.88,-0.0045658,-0.48802,0.87282,-40.254 > view matrix models > #1,-0.99339,-0.097902,-0.059936,237.97,0.1147,-0.86733,-0.48435,191.77,-0.0045658,-0.48802,0.87282,-80.33 > view matrix models > #1,-0.99339,-0.097902,-0.059936,236.28,0.1147,-0.86733,-0.48435,193.21,-0.0045658,-0.48802,0.87282,-84.772 > view matrix models > #1,-0.99339,-0.097902,-0.059936,243.57,0.1147,-0.86733,-0.48435,221.41,-0.0045658,-0.48802,0.87282,-82.544 > view matrix models > #1,-0.99601,-0.023085,-0.086204,237.73,0.080004,-0.65896,-0.74791,235.65,-0.03954,-0.75182,0.65818,-12.722 > view matrix models > #1,-0.99601,-0.023085,-0.086204,235.86,0.080004,-0.65896,-0.74791,229.3,-0.03954,-0.75182,0.65818,-12.41 > view matrix models > #1,-0.99601,-0.023085,-0.086204,233.49,0.080004,-0.65896,-0.74791,231.49,-0.03954,-0.75182,0.65818,-12.421 > view matrix models > #1,-0.99601,-0.023085,-0.086204,232.06,0.080004,-0.65896,-0.74791,230.49,-0.03954,-0.75182,0.65818,-12.615 > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 9433 points correlation = 0.4387, correlation about mean = 0.04356, overlap = 772.9 steps = 96, shift = 2.76, angle = 8.8 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98556646 0.16446443 -0.04012731 -15.57685842 0.11384342 -0.46845260 0.87612318 77.16569696 0.12529335 -0.86804585 -0.48041437 299.75490571 Axis -0.99511732 -0.09437902 -0.02888128 Axis point 0.00000000 128.40193425 127.18293889 Rotation angle (degrees) 118.79323846 Shift along axis -0.43932732 > volume #2 level 0.2352 > volume #1 level 0.2658 > fitmap #2 inMap #1 Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map cryosparc_P24_J324_008_volume_map_sharp.mrc using 22250 points correlation = 0.4204, correlation about mean = 0.06267, overlap = 1206 steps = 48, shift = 0.163, angle = 2.45 degrees Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98696227 0.15853385 -0.02779384 -16.39318310 0.09510283 -0.43509822 0.89534629 72.79472932 0.12984964 -0.88631628 -0.44450255 297.16039920 Axis -0.99548259 -0.08808140 -0.03544132 Axis point 0.00000000 129.46317793 126.26695873 Rotation angle (degrees) 116.50777510 Shift along axis -0.62449058 > fitmap #1 inMap #2 Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map cryosparc_P24_J322_007_volume_map_sharp.mrc using 23595 points correlation = 0.4513, correlation about mean = 0.0574, overlap = 1369 steps = 48, shift = 0.326, angle = 2.51 degrees Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation 0.98691297 0.11356065 0.11448484 -29.90366012 0.15478786 -0.46812075 -0.87000212 300.31757047 -0.04520527 0.87633724 -0.47957225 76.26751792 Axis 0.99557006 0.09103769 0.02350321 Axis point 0.00000000 128.82873756 127.86124094 Rotation angle (degrees) 118.71087730 Shift along axis -0.63843956 > view matrix models > #1,-0.99986,-0.010188,0.013274,217.43,0.0031288,-0.89311,-0.44982,230.84,0.016438,-0.44972,0.89302,-92.603 > view matrix models > #1,-0.99915,0.024753,0.033004,209.97,-0.037391,-0.88136,-0.47096,237.52,0.01743,-0.47179,0.88154,-88.22 Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M2 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac Model Identifier: Mac14,9 Model Number: MPHE3LL/A Chip: Unknown Total Number of Cores: 10 (6 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 10151.1.1 OS Loader Version: 8422.141.2 Software: System Software Overview: System Version: macOS 13.6 (22G120) Kernel Version: Darwin 22.6.0 Time since boot: 5 hours, 21 minutes Graphics/Displays: Apple M2 Pro: Chipset Model: Apple M2 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal HP E243: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes HP E223: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX