id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9955 Movie creation: No space left on device chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-13.0-arm64-arm-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/cryosparc_P2_J450_006_volume_map_sharp.mrc Opened cryosparc_P2_J450_006_volume_map_sharp.mrc as #1, grid size 640,640,640, pixel 0.832, shown at level 0.0374, step 4, values float32 > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA-membrane.mrc Opened typeA-membrane.mrc as #2, grid size 640,640,640, pixel 0.832, shown at level 0.0236, step 4, values float32 > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc Opened typeA.mrc as #3, grid size 600,600,600, pixel 1.04, shown at level 0.0239, step 4, values float32 > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_mem.pdb > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb Summary of feedback from opening /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 ASN A 2 ALA A 21 1 20 Start residue of secondary structure not found: HELIX 2 2 SER A 31 THR A 34 1 4 Start residue of secondary structure not found: HELIX 3 3 PHE A 56 LEU A 72 1 17 Start residue of secondary structure not found: HELIX 4 4 LEU A 75 ALA A 78 1 4 Start residue of secondary structure not found: HELIX 5 5 LEU A 84 THR A 107 1 24 888 messages similar to the above omitted Chain information for A_prot.pdb #5 --- Chain | Description 1A | No description available 1B | No description available 1C | No description available 1D | No description available 1E | No description available 1F | No description available 1G | No description available 1H | No description available 1I | No description available 1J | No description available 1K | No description available 1L | No description available 1M | No description available 1N | No description available 1O | No description available 1P | No description available 1Q | No description available 1R | No description available 1S | No description available 1T | No description available 1U | No description available 1V | No description available 1W | No description available 1X | No description available 1Y | No description available 1Z | No description available 1a | No description available 1b | No description available 1c | No description available 1d | No description available 1e | No description available 1f | No description available 1g | No description available 1h | No description available 1i | No description available 1j | No description available 1k | No description available 1l | No description available 1m | No description available 1n | No description available 1o | No description available 1p | No description available 1q | No description available 1r | No description available 1s | No description available 3A | No description available 3B | No description available 3C 3P | No description available 3D | No description available 3E 3R | No description available 3F 3S | No description available 3G 3T | No description available 3H 3U | No description available 3I 3V | No description available 3J 3W | No description available 3N | No description available 3O | No description available 3Q | No description available 3X | No description available 3Y | No description available 4A | No description available 4B | No description available 4C | No description available 4D | No description available 4E | No description available 4F | No description available 4G | No description available 4H | No description available 4I | No description available 4J | No description available 4K | No description available 4L | No description available 4M | No description available 4N | No description available > select clear > hide #!2 models > hide #!3 models > hide #4 models > hide #!5 atoms > show #!5 cartoons > select add #5 118101 atoms, 120933 bonds, 146 pseudobonds, 14314 residues, 3 models selected Mismatch between Cocoa '\x0' and Carbon 'v' for virtual key 9 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon 'V' for virtual key 9 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon 'v' for virtual key 9 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon 'v' for virtual key 9 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\u221a' for virtual key 9 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u25ca' for virtual key 9 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u221a' for virtual key 9 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u25ca' for virtual key 9 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > molmap sel 3 Opened A_prot.pdb map 3 as #6, grid size 235,300,230, pixel 1, shown at level 0.115, step 1, values float32 > hide #!5 models > select subtract #5 Nothing selected > select add #1 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #1,1,0,0,-285.8,0,1,0,167.7,0,0,1,91.914 > view matrix models > #1,-0.21978,0.8697,-0.44194,-52.4,0.78404,0.42704,0.45047,-32.052,0.5805,-0.2475,-0.77573,574.47 > view matrix models > #1,-0.3924,0.69282,-0.60499,92.755,0.81636,0.56537,0.11795,29.375,0.42376,-0.44761,-0.78745,672.99 > view matrix models > #1,-0.29699,0.74005,-0.60342,-21.997,0.84017,0.50282,0.20317,79.283,0.45377,-0.44664,-0.77111,651.57 > view matrix models > #1,-0.38916,0.54382,-0.74352,99.638,-0.10608,0.77532,0.6226,122.55,0.91504,0.32116,-0.24403,155.78 > view matrix models > #1,-0.40213,0.12194,-0.90743,268.01,-0.176,0.96231,0.20731,224.68,0.89851,0.24307,-0.36551,219.96 > view matrix models > #1,-0.40213,0.12194,-0.90743,-1.6019,-0.176,0.96231,0.20731,53.193,0.89851,0.24307,-0.36551,71.389 > view matrix models > #1,-0.47934,0.50939,-0.71467,-146.21,0.1566,0.85089,0.50146,-99.684,0.86355,0.12845,-0.48764,150.38 > view matrix models > #1,-0.2428,0.068262,-0.96767,-10.146,-0.14342,0.98403,0.1054,71.521,0.95942,0.16438,-0.22913,32.403 > view matrix models > #1,-0.2428,0.068262,-0.96767,-6.4109,-0.14342,0.98403,0.1054,22.42,0.95942,0.16438,-0.22913,56.303 > fitmap #1 inMap #6 Fit map cryosparc_P2_J450_006_volume_map_sharp.mrc in map A_prot.pdb map 3 using 40872 points correlation = 0.7747, correlation about mean = 0.5184, overlap = 1676 steps = 336, shift = 13.6, angle = 17.2 degrees Position of cryosparc_P2_J450_006_volume_map_sharp.mrc (#1) relative to A_prot.pdb map 3 (#6) coordinates: Matrix rotation and translation 0.00450696 0.00279938 -0.99998592 -53.13910322 -0.00379807 0.99998891 0.00278227 7.88010026 0.99998263 0.00378548 0.00451754 13.39301806 Axis 0.00050161 -0.99999443 -0.00329876 Axis point -33.28119590 0.00000000 -20.00419765 Rotation angle (degrees) 89.74178369 Shift along axis -7.95089176 > hide #!1 models > show #!1 models > hide #!1 models > hide #!6 models > show #!1 models > volume #1 level 0.1022 > volume #1 step 1 > show #!6 models > fitmap #1 inMap #6 Fit map cryosparc_P2_J450_006_volume_map_sharp.mrc in map A_prot.pdb map 3 using 674343 points correlation = 0.8663, correlation about mean = 0.2717, overlap = 7.511e+04 steps = 40, shift = 0.0289, angle = 0.0642 degrees Position of cryosparc_P2_J450_006_volume_map_sharp.mrc (#1) relative to A_prot.pdb map 3 (#6) coordinates: Matrix rotation and translation 0.00472422 0.00220154 -0.99998642 -53.07834777 -0.00471769 0.99998649 0.00217926 8.28271548 0.99997771 0.00470733 0.00473455 13.10643762 Axis 0.00126405 -0.99999322 -0.00345966 Axis point -33.10363340 0.00000000 -20.12076479 Rotation angle (degrees) 89.72941207 Shift along axis -8.39509673 > volume #1 level 0.06291 > hide #!1 models > show #!1 models > hide #!6 models > show #!3 models > select add #3 4 models selected > select subtract #1 2 models selected > view matrix models #3,1,0,0,-366.53,0,1,0,-60.756,0,0,1,-242.79 > view matrix models #3,1,0,0,-592.45,0,1,0,62.39,0,0,1,-309.22 > view matrix models #3,1,0,0,-704.52,0,1,0,156.85,0,0,1,-338.36 > view matrix models > #3,-0.43256,0.20446,-0.87811,-31.455,0.088414,0.97887,0.18437,72.379,0.89726,0.0021139,-0.4415,-103.21 > view matrix models > #3,-0.46075,-0.004597,-0.88752,35.447,0.18246,0.97814,-0.09979,143.46,0.86857,-0.20792,-0.44984,-36.274 > view matrix models > #3,-0.46075,-0.004597,-0.88752,133.7,0.18246,0.97814,-0.09979,142.94,0.86857,-0.20792,-0.44984,56.349 > volume #3 level 0.107 > volume #3 step 1 > view matrix models > #3,-0.32699,0.19844,-0.92396,53.42,0.049995,0.97997,0.19278,80.412,0.9437,0.016843,-0.33036,-66.244 > view matrix models > #3,-0.20475,0.10359,-0.97332,59.425,-0.077119,0.98959,0.12154,139.95,0.97577,0.099947,-0.19463,-144.46 > view matrix models > #3,-0.16931,-0.049928,-0.9843,93.19,0.086083,0.99415,-0.065235,155.18,0.9818,-0.095776,-0.16402,-105.29 > view matrix models > #3,-0.16931,-0.049928,-0.9843,10.531,0.086083,0.99415,-0.065235,53.008,0.9818,-0.095776,-0.16402,76.683 > view matrix models > #3,-0.16931,-0.049928,-0.9843,45.282,0.086083,0.99415,-0.065235,23.008,0.9818,-0.095776,-0.16402,78.581 > fitmap #3 inMap #1 Fit map typeA.mrc in map cryosparc_P2_J450_006_volume_map_sharp.mrc using 813709 points correlation = 0.8967, correlation about mean = 0.6544, overlap = 2.271e+04 steps = 264, shift = 26.8, angle = 11.4 degrees Position of typeA.mrc (#3) relative to cryosparc_P2_J450_006_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99998265 -0.00193714 -0.00556251 -12.87610935 0.00191408 0.99998957 -0.00414832 -7.09276587 0.00557048 0.00413760 0.99997593 -53.69566857 Axis 0.57531160 -0.77299021 0.26739988 Axis point 8854.82384174 0.00000000 -658.28496698 Rotation angle (degrees) 0.41260474 Shift along axis -16.28335170 > set bgColor white > select clear > hide #!1 models > volume #3 color darkgrey > lighting soft > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > view > show #!1 models > view > close #2 > view > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!6 models > show #!5 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > hide #!5 models > show #!6 models > volumn subtract #1 #6 Unknown command: volumn subtract #1 #6 > volume subtract #1 #6 Opened volume difference as #2, grid size 640,640,640, pixel 0.832, shown at step 1, values float32 > volume #2 level 0.015 > volume #2 level 0.03 > show #!3 models > hide #!3 models > transparency #2.1 50 > show #4 models > hide #4 models > transparency #2.1 0 > ui mousemode right ""map eraser"" > volume #2 color #929292 > volume erase #2 center -527.5,213.44,240.69 radius 193.38 > volume erase #2 center -167.31,317.4,269.13 radius 109.32 > volume erase #2 center -201.45,378.92,360.36 radius 80.335 > volume erase #2 center -196.24,298.8,331.78 radius 80.335 > volume erase #2 center -186.88,186.92,243.43 radius 80.335 > volume erase #2 center -190.71,239.22,308 radius 80.335 > volume erase #2 center -202.79,339.9,264.46 radius 80.335 > volume erase #2 center -429.62,298.16,300.14 radius 80.335 > volume erase #2 center -402.27,302.78,218.13 radius 80.335 > volume erase #2 center -398.32,265.95,331.49 radius 80.335 > volume erase #2 center -393.78,215.47,300.74 radius 80.335 > volume erase #2 center -418.47,338.94,359.17 radius 80.335 > volume erase #2 center -443.01,301.32,298.55 radius 113.88 > volume erase #2 center -437.61,191.5,238.11 radius 113.88 > hide #!2 models > show #!2 models > transparency #2.1 50 > show #4 models > select add #4 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > style sel stick Changed 77740 atom styles > size stickRadius 2 Changed 197182 bond radii > show #!5 models > show sel atoms > select clear > select add #5 118101 atoms, 120933 bonds, 146 pseudobonds, 14314 residues, 3 models selected > show sel atoms > select clear > hide #!5 models > surface dust #2 size 8.32 > hide #4 models > show #4 models > ui mousemode right ""map eraser"" > hide #4 models > show #4 models > hide #4 models > show #4 models > hide #!2 models > show #!2 models > hide #4 models > show #!6 models > volume resample #2 onGrid #6 Opened volume difference resampled as #7, grid size 235,300,230, pixel 1, shown at step 1, values float32 > volume #7 level 0.03 > close #7 > show #!2 models > show #!1 models > hide #!1 models > show #!3 models > hide #!2 models > volume resample #3 onGrid #6 Opened typeA.mrc resampled as #7, grid size 235,300,230, pixel 1, shown at step 1, values float32 > volume #7 level 0.06275 > volume #7 level 0.1291 > volume #7 level 0.1414 > surface dust #7 size 10 > show #!5 models > transparency #7.1 50 > hide #!5 models > show #!5 models > color zone #7 near #5 distance 6 > hide #!5 models > show #!2 models > close #3 > hide #!2 models > save /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc models #7 > show #!2 models > hide #!2 models > save /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA-membrane.mrc > models #2 > show #!2 models > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA-membrane.mrc Opened typeA-membrane.mrc as #3, grid size 640,640,640, pixel 0.832, shown at level 0.0264, step 4, values float32 > color #3 #941100ff models > close #3 > hide #!2 models > show #!2 models > volume resample #2 onGrid #7 Opened typeA-membrane.mrc resampled as #3, grid size 235,300,230, pixel 1, shown at step 1, values float32 > close #3 > show #!2 models > show #4 models > hide #4 models > show #4 models > hide #!2 models > hide #4 models > hide #!7 models > show #4 models > hide #4 models > show #!2 models > close #6 > close #1 > close #7 > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc Opened typeA.mrc as #1, grid size 235,300,230, pixel 1, shown at level 0.319, step 1, values float32 > show #4 models > show #!5 models > save > /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA_membrane_and_pdb.cxs > includeMaps true > close #4#5 > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb Summary of feedback from opening /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 ASN A 2 ALA A 21 1 20 Start residue of secondary structure not found: HELIX 2 2 SER A 31 THR A 34 1 4 Start residue of secondary structure not found: HELIX 3 3 PHE A 56 LEU A 72 1 17 Start residue of secondary structure not found: HELIX 4 4 LEU A 75 ALA A 78 1 4 Start residue of secondary structure not found: HELIX 5 5 LEU A 84 THR A 107 1 24 888 messages similar to the above omitted Chain information for A_prot.pdb #3 --- Chain | Description 1A | No description available 1B | No description available 1C | No description available 1D | No description available 1E | No description available 1F | No description available 1G | No description available 1H | No description available 1I | No description available 1J | No description available 1K | No description available 1L | No description available 1M | No description available 1N | No description available 1O | No description available 1P | No description available 1Q | No description available 1R | No description available 1S | No description available 1T | No description available 1U | No description available 1V | No description available 1W | No description available 1X | No description available 1Y | No description available 1Z | No description available 1a | No description available 1b | No description available 1c | No description available 1d | No description available 1e | No description available 1f | No description available 1g | No description available 1h | No description available 1i | No description available 1j | No description available 1k | No description available 1l | No description available 1m | No description available 1n | No description available 1o | No description available 1p | No description available 1q | No description available 1r | No description available 1s | No description available 3A | No description available 3B | No description available 3C 3P | No description available 3D | No description available 3E 3R | No description available 3F 3S | No description available 3G 3T | No description available 3H 3U | No description available 3I 3V | No description available 3J 3W | No description available 3N | No description available 3O | No description available 3Q | No description available 3X | No description available 3Y | No description available 4A | No description available 4B | No description available 4C | No description available 4D | No description available 4E | No description available 4F | No description available 4G | No description available 4H | No description available 4I | No description available 4J | No description available 4K | No description available 4L | No description available 4M | No description available 4N | No description available > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_mem.pdb > save > /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA_membrane_and_pdb.cxs > includeMaps true > hide #!2 models > hide #!3 models > hide #4 models > show #4 models > hide #!1 models > select ::name=""PC1"" 765 atoms, 748 bonds, 17 residues, 1 model selected > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > size stickRadius 1 Changed 197182 bond radii > select P 1599 atoms, 1579 residues, 2 models selected > style sel & #4 sphere Changed 1495 atom styles > style sel & #4 sphere Changed 1495 atom styles Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > color sel dark cyan > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > color sel antique white > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > size stickRadius 1 Changed 197182 bond radii > color sel antique white > select P 1599 atoms, 1579 residues, 2 models selected > style sel & #4 sphere Changed 1495 atom styles > color sel dark cyan > size ballScale 1 Changed 2 ball scales > size ballScale 2 Changed 2 ball scales > style sel & #4 sphere Changed 1495 atom styles > size spherescale 2 Expected a keyword > size sphereradius 2 Expected a keyword > size ballScale 20 Changed 2 ball scales > style sel & #4 sphere Changed 1495 atom styles > select clear > select P 1599 atoms, 1579 residues, 2 models selected > size sel ballScale 3 Changed 2 ball scales > style sel & #4 ball Changed 1495 atom styles > size sel ballScale 2 Changed 2 ball scales > select clear > transparency stick 30 Missing or invalid ""percent"" argument: Expected a number > transparency 30 stick Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color #4 antiquewhite > select add #4 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > color #4 #faebd7fd > lighting soft > lighting simple > lighting full > lighting simple > color sel peach puff > select P 1599 atoms, 1579 residues, 2 models selected > color (#4 & sel) forest green > color sel chocolate > style sel & #4 ball Changed 1495 atom styles > size ballScale 1.5 Changed 2 ball scales > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > size stickRadius 1 Changed 197182 bond radii > color sel peach puff > select P 1599 atoms, 1579 residues, 2 models selected > color sel chocolate > style sel ball Changed 1599 atom styles > size ballScale 1.5 Changed 2 ball scales > select clear > show #!1 models > show #!3 models > hide #!3 models > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc Opened typeA.mrc as #5, grid size 235,300,230, pixel 1, shown at level 0.319, step 1, values float32 > hide #!5 models > hide #4 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!1 models > show #4 models > hide #4 models > show #4 models > hide #4 models > hide #!3 atoms > show #!3 cartoons > cartoon style #3 modeHelix tube sides 20 > lighting soft > show #4 models > hide #4 models > hide #!3 models > show #!3 models > show #!1 models > color zone #1 near #3 distance 6 > hide #!3 models > volume #1 level 0.015 > volume #1 level 0.02 > volume #1 level 0.03 > volume #1 level 0.04 > volume #1 level 0.3 > volume #1 level 0.15 > volume #5 color #797979 > volume #5 color darkgrey > volume #5 level 0.15 > color #5 #c6f7ff99 models > color #5 darkgrey models > transparency #5.1 0 > hide #!5 models > show #!2 models > color #2 #c6f7ff99 models > show #4 models > lighting simple > show #!1 models > lighting soft > color #4 peachpuff > color #4 #ffdab900 > color #4 peachpuff > hide #!2 models > show #!2 models > hide #!2 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > hide #!1 models > show #!1 models > hide #!1 models > hide #4 models > show #4 models > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > size stickRadius 1 Changed 197182 bond radii > color sel peach puff > select P 1599 atoms, 1579 residues, 2 models selected > color sel chocolate > style sel ball Changed 1599 atom styles > size ballScale 1.5 Changed 2 ball scales > select clear > select add #4 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > color sel byhetero > select clear [Repeated 1 time(s)] > color #4 #919191ff > color #4 silver > select P 1599 atoms, 1579 residues, 2 models selected > color (#4 & sel) orange > select clear > show #!2 models > hide #!2 models > select add #4 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > color sel forest green > select P 1599 atoms, 1579 residues, 2 models selected > color (#4 & sel) orange > show #!2 models > select clear > volume #2 level 0.02 > hide #!2 models > show #!3 models > hide #!3 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > hide #4 models > show #!1 models > show #!2 models > hide #!1 models > show #!1 models > show #!5 models > hide #!2 models > hide #!1 models > show #4 models > open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb Summary of feedback from opening /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 ASN A 2 ALA A 21 1 20 Start residue of secondary structure not found: HELIX 2 2 SER A 31 THR A 34 1 4 Start residue of secondary structure not found: HELIX 3 3 PHE A 56 LEU A 72 1 17 Start residue of secondary structure not found: HELIX 4 4 LEU A 75 ALA A 78 1 4 Start residue of secondary structure not found: HELIX 5 5 LEU A 84 THR A 107 1 24 888 messages similar to the above omitted Chain information for A_prot.pdb #6 --- Chain | Description 1A | No description available 1B | No description available 1C | No description available 1D | No description available 1E | No description available 1F | No description available 1G | No description available 1H | No description available 1I | No description available 1J | No description available 1K | No description available 1L | No description available 1M | No description available 1N | No description available 1O | No description available 1P | No description available 1Q | No description available 1R | No description available 1S | No description available 1T | No description available 1U | No description available 1V | No description available 1W | No description available 1X | No description available 1Y | No description available 1Z | No description available 1a | No description available 1b | No description available 1c | No description available 1d | No description available 1e | No description available 1f | No description available 1g | No description available 1h | No description available 1i | No description available 1j | No description available 1k | No description available 1l | No description available 1m | No description available 1n | No description available 1o | No description available 1p | No description available 1q | No description available 1r | No description available 1s | No description available 3A | No description available 3B | No description available 3C 3P | No description available 3D | No description available 3E 3R | No description available 3F 3S | No description available 3G 3T | No description available 3H 3U | No description available 3I 3V | No description available 3J 3W | No description available 3N | No description available 3O | No description available 3Q | No description available 3X | No description available 3Y | No description available 4A | No description available 4B | No description available 4C | No description available 4D | No description available 4E | No description available 4F | No description available 4G | No description available 4H | No description available 4I | No description available 4J | No description available 4K | No description available 4L | No description available 4M | No description available 4N | No description available > select #6/1*#ED553B Expected an objects specifier or a keyword > select #6/1* #ED553B Expected a keyword > hide #4 models > color #6/1* #ED553B > color #6/3* #F6D55C Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > color #6/4* #20639B > color zone #5 near #6 distance 6 > hide #!6 models > show #4 models > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > size stickRadius 1 Changed 318115 bond radii > color sel peach puff > select P 1703 atoms, 1663 residues, 3 models selected > color sel chocolate > select clear > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > size stickRadius 1 Changed 318115 bond radii > color sel cyan > select P 1703 atoms, 1663 residues, 3 models selected > color sel chocolate > style sel ball Changed 1703 atom styles > size ballScale 1.5 Changed 3 ball scales > select clear > select ::name=""POP"" 77740 atoms, 76249 bonds, 1495 residues, 1 model selected > size stickRadius 1 Changed 318115 bond radii > color sel light blue > select P 1703 atoms, 1663 residues, 3 models selected > color sel chocolate > style sel ball Changed 1703 atom styles > size ballScale 1.5 Changed 3 ball scales > select clear > hide #4 models > hide #!5 models > show #!1 models > show #!2 models > show #4 models > show #!5 models > hide #!1 models > hide #!2 models > hide #4 models > hide #!5 models > show #!1 models > show #!2 models > view name p1 > view p1 > turn y -1 360 > wait > turn x 1 75 > wait > hide #!1 models > hide #!2 models > show #!5 models > show #4 models > view p1 > turn y -1 360 > wait > turn x 1 75 > wait > hide #!1 models > hide #!2 models > wait wait requires a frame count argument unless motion is in progress > show #!5 models > show #4 models > view p1 > turn x -1 75 > wait > turn y -1 360 > wait > turn X 1 360 > wait > show #!1 models > show #!2 models > hide #!1 models > hide #!2 models > hide #!5 models > select P 1703 atoms, 1663 residues, 3 models selected > color (#4 & sel) cyan > select clear > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > transparncy #4 50 Unknown command: transparncy #4 50 > transparncy 10 #4 Unknown command: transparncy 10 #4 > transpaency 10 #4 Unknown command: transpaency 10 #4 > transparency 10 #4 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > transparency #4 70 > transparency #4 100 > select P 1703 atoms, 1663 residues, 3 models selected > color (#4 & sel) cornflower blue > select clear > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!5 models > show #!6 models > hide #!5 models > hide #!6 models > show #!5 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait > turn x -1 75 > wait > hide #!1 models > hide #!2 models > wait wait requires a frame count argument unless motion is in progress > show #!5 models > show #!4 models > view p1 > turn y -1 360 > wait 10 > turn X 1 90 > wait 50 > hide #4 models > hide #!5 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait > turn x -1 75 > wait > hide #!1 models > hide #!2 models > wait wait requires a frame count argument unless motion is in progress > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 10 > turn x -1 75 > wait 10 > hide #!1 models > hide #!2 models > wait > show #!5 models > show #!4 models > view p1 > hide #4 models > hide #!5 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 50 > hide #!1 models > hide #!2 models > wait > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 50 > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 50 > hide #!1 models > hide #!2 models > wait > show #!5 models > show #!4 models > view p1 > hide #4 models > hide #!5 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 50 > hide #!1 models > hide #!2 models > wait > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > view p1 > hide #!5 models > hide #4 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > view p1 > turn y -1 360 > wait 10 > turn X 1 270 > wait 200 > turn X 1 90 > wait 10 > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > view p1 > wait 50 > turn y -1 360 > wait 10 > turn X 1 270 > wait 200 > turn X 1 90 > wait 10 > hide #4 models > view p1 > show #4 models > turn y -1 360 > wait 10 > turn X 1 270 > wait 200 > turn X 1 90 > wait 10 > view p1 > wait 50 > turn y -1 360 > wait 10 > hide #4 models > hide #!5 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > view p1 > wait 50 > turn y -1 360 > wait > turn X 1 270 > wait > turn X 1 90 > wait > hide #4 models > graphics silhouettes true > show #!2 models > hide #!5 models > show #!5 models > graphics silhouettes false > hide #!2 models > show #4 models > graphics silhouettes true > hide #4 models > hide #!5 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > view p1 > wait 50 > turn y -1 360 > wait > turn X 1 270 > wait > turn X 1 90 > wait > graphics silhouettes false > hide #4 models > hide #!5 models > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 75 > wait 50 > turn x -1 75 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > view p1 > wait 50 > turn y -1 360 > wait > turn X 1 270 > wait > turn X 1 90 > wait > hide #4 models > hide #!5 models > graphics silhouettes false [Repeated 1 time(s)] > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 180 > wait 50 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > view p1 > wait 50 > turn y -1 360 > wait > turn X 1 270 > wait 300 > turn X 1 90 > wait > hide #4 models > hide #!5 models Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > graphics silhouettes false > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 90 > wait 50 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > wait 50 > turn y -1 360 > wait > turn X 1 270 > wait 300 > turn X 1 90 > wait > hide #4 models > show #4 models > hide #!5 models > hide #4 models > graphics silhouettes false > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 90 > wait 50 > wait 200 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > wait 50 > turn x -1 90 > wait > turn y -1 360 > wait > turn X 1 270 > wait 300 > turn X 1 90 > wait > hide #4 models > hide #!5 models > graphics silhouettes false > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 90 > wait 50 > wait 100 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > wait 50 > turn x -1 90 > wait > turn y -1 360 > wait > turn X 1 270 > wait 300 > turn X 1 90 > wait > select clear > hide #4 models > hide #!5 models > save > /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/1010_typeA_membrane_curvature.cxs > includeMaps true > record movie Unknown command: record movie > graphics silhouettes false > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 90 > wait 50 > wait 100 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > wait 50 > turn x -1 90 > wait > turn y -1 360 > wait > turn X 1 270 > wait 300 > turn X 1 90 > wait > movie encode quality higher No frames have been recorded > hide #4 models > hide #!5 models > movie record > graphics silhouettes false > view p1 > show #!1 models > show #!2 models > turn y -1 360 > wait > turn x 1 90 > wait 50 > wait 100 > wait wait requires a frame count argument unless motion is in progress > hide #!1 models > hide #!2 models > show #!5 models > show #!4 models > graphics silhouettes true > wait 50 > turn x -1 90 > wait > turn y -1 360 > wait Traceback (most recent call last): File ""/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/movie.py"", line 172, in capture_image i.save(save_path, self.img_fmt) File ""/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/Image.py"", line 2320, in save save_handler(self, fp, filename) File ""/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/PpmImagePlugin.py"", line 324, in _save ImageFile._save(im, fp, [(""raw"", (0, 0) + im.size, 0, (rawmode, 0, 1))]) File ""/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/ImageFile.py"", line 524, in _save s = encoder.encode_to_file(fh, bufsize) OSError: [Errno 28] No space left on device Error processing trigger ""frame drawn"": OSError: [Errno 28] No space left on device File ""/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/ImageFile.py"", line 524, in _save s = encoder.encode_to_file(fh, bufsize) See log for complete Python traceback. > turn X 1 270 > wait 300 > turn X 1 90 > wait > movie encode quality higher /Users/hello/Desktop/ChimeraX-1.5.app/Contents/bin/ffmpeg -r 25 -i /var/folders/lk/tgpf2q0d3xq2vbcgn6z5tmvm0000gn/T/chimovie_BUad-%05d.ppm -vf crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt yuv420p -crf 17 /Users/hello/Desktop/movie.mp4 stdout: stderr: ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers built with Apple clang version 11.0.0 (clang-1100.0.33.16) configuration: --prefix=/private/var/tmp/chimerax_build/v1.1/chimerax/build --enable-gpl --enable-version3 --disable-network --disable-doc --disable- devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable- libtheora --enable-libvpx --enable-libx264 --yasmexe=/private/var/tmp/chimerax_build/v1.1/chimerax/build/bin/yasm --optflags=-O --extra- cflags=-I/private/var/tmp/chimerax_build/v1.1/chimerax/build/include --extra- ldflags='-O3 -Wall -Wextra -L/private/var/tmp/chimerax_build/v1.1/chimerax/build/lib' --extra-libs=-ldl libavutil 55. 34.101 / 55. 34.101 libavcodec 57. 64.101 / 57. 64.101 libavformat 57. 56.101 / 57. 56.101 libavdevice 57. 1.100 / 57. 1.100 libavfilter 6. 65.100 / 6. 65.100 libswscale 4. 2.100 / 4. 2.100 libswresample 2. 3.100 / 2. 3.100 libpostproc 54. 1.100 / 54. 1.100 Input #0, image2, from '/var/folders/lk/tgpf2q0d3xq2vbcgn6z5tmvm0000gn/T/chimovie_BUad-%05d.ppm': Duration: 00:00:32.80, start: 0.000000, bitrate: N/A Stream #0:0: Video: ppm, rgb24, 2304x1602, 25 tbr, 25 tbn, 25 tbc [libx264 @ 0x7fc1e300c200] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2 [libx264 @ 0x7fc1e300c200] profile High, level 5.0 [libx264 @ 0x7fc1e300c200] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=18 lookahead_threads=3 sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0 constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1 weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40 intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=17.0 qcomp=0.60 qpmin=0 qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00 Output #0, mp4, to '/Users/hello/Desktop/movie.mp4': Metadata: encoder : Lavf57.56.101 Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p, 2304x1602, q=-1--1, 25 fps, 12800 tbn, 25 tbc Metadata: encoder : Lavc57.64.101 libx264 Side data: cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1 Stream mapping: Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264)) Press [q] to stop, [?] for help frame= 18 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x frame= 35 fps= 34 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x frame= 47 fps= 24 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x av_interleaved_write_frame(): No space left on device frame= 64 fps= 26 q=22.0 size= 373kB time=-00:00:00.03 bitrate=N/A speed=N/A Error writing trailer of /Users/hello/Desktop/movie.mp4: No space left on deviceframe= 64 fps= 15 q=22.0 Lsize= 373kB time=-00:00:00.03 bitrate=N/A speed=N/A video:455kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: unknown [libx264 @ 0x7fc1e300c200] frame I:1 Avg QP: 7.95 size:249829 [libx264 @ 0x7fc1e300c200] frame P:16 Avg QP:15.74 size:196043 [libx264 @ 0x7fc1e300c200] frame B:47 Avg QP:18.47 size:132649 [libx264 @ 0x7fc1e300c200] consecutive B-frames: 1.6% 0.0% 4.7% 93.8% [libx264 @ 0x7fc1e300c200] mb I I16..4: 73.3% 3.1% 23.5% [libx264 @ 0x7fc1e300c200] mb P I16..4: 0.5% 1.5% 10.7% P16..4: 4.4% 5.1% 5.7% 0.0% 0.0% skip:72.0% [libx264 @ 0x7fc1e300c200] mb B I16..4: 0.0% 0.4% 5.2% B16..8: 6.0% 6.4% 5.8% direct: 2.4% skip:73.7% L0:35.1% L1:34.2% BI:30.7% [libx264 @ 0x7fc1e300c200] 8x8 transform intra:7.8% inter:9.0% [libx264 @ 0x7fc1e300c200] coded y,uvDC,uvAC intra: 82.5% 81.5% 71.4% inter: 12.0% 10.7% 7.0% [libx264 @ 0x7fc1e300c200] i16 v,h,dc,p: 95% 2% 3% 1% [libx264 @ 0x7fc1e300c200] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 9% 11% 24% 7% 10% 8% 11% 8% 12% [libx264 @ 0x7fc1e300c200] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 11% 13% 14% 9% 11% 10% 12% 8% 12% [libx264 @ 0x7fc1e300c200] i8c dc,h,v,p: 65% 14% 14% 7% [libx264 @ 0x7fc1e300c200] Weighted P-Frames: Y:25.0% UV:6.2% [libx264 @ 0x7fc1e300c200] ref P L0: 57.7% 14.5% 14.5% 10.6% 2.6% [libx264 @ 0x7fc1e300c200] ref B L0: 92.5% 5.9% 1.5% [libx264 @ 0x7fc1e300c200] ref B L1: 97.6% 2.4% [libx264 @ 0x7fc1e300c200] kb/s:30065.75 Conversion failed! An error occurred during encoding. See Reply Log for details. Error during MPEG encoding: \----------------------------- Exit value: 1 Error message: stdout: stderr: ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers built with Apple clang version 11.0.0 (clang-1100.0.33.16) configuration: --prefix=/private/var/tmp/chimerax_build/v1.1/chimerax/build --enable-gpl --enable-version3 --disable-network --disable-doc --disable- devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable- libtheora --enable-libvpx --enable-libx264 --yasmexe=/private/var/tmp/chimerax_build/v1.1/chimerax/build/bin/yasm --optflags=-O --extra- cflags=-I/private/var/tmp/chimerax_build/v1.1/chimerax/build/include --extra- ldflags='-O3 -Wall -Wextra -L/private/var/tmp/chimerax_build/v1.1/chimerax/build/lib' --extra-libs=-ldl libavutil 55. 34.101 / 55. 34.101 libavcodec 57. 64.101 / 57. 64.101 libavformat 57. 56.101 / 57. 56.101 libavdevice 57. 1.100 / 57. 1.100 libavfilter 6. 65.100 / 6. 65.100 libswscale 4. 2.100 / 4. 2.100 libswresample 2. 3.100 / 2. 3.100 libpostproc 54. 1.100 / 54. 1.100 Input #0, image2, from '/var/folders/lk/tgpf2q0d3xq2vbcgn6z5tmvm0000gn/T/chimovie_BUad-%05d.ppm': Duration: 00:00:32.80, start: 0.000000, bitrate: N/A Stream #0:0: Video: ppm, rgb24, 2304x1602, 25 tbr, 25 tbn, 25 tbc [libx264 @ 0x7fc1e300c200] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2 [libx264 @ 0x7fc1e300c200] profile High, level 5.0 [libx264 @ 0x7fc1e300c200] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=18 lookahead_threads=3 sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0 constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1 weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40 intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=17.0 qcomp=0.60 qpmin=0 qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00 Output #0, mp4, to '/Users/hello/Desktop/movie.mp4': Metadata: encoder : Lavf57.56.101 Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p, 2304x1602, q=-1--1, 25 fps, 12800 tbn, 25 tbc Metadata: encoder : Lavc57.64.101 libx264 Side data: cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1 Stream mapping: Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264)) Press [q] to stop, [?] for help frame= 18 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x frame= 35 fps= 34 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x frame= 47 fps= 24 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x av_interleaved_write_frame(): No space left on device frame= 64 fps= 26 q=22.0 size= 373kB time=-00:00:00.03 bitrate=N/A speed=N/A Error writing trailer of /Users/hello/Desktop/movie.mp4: No space left on deviceframe= 64 fps= 15 q=22.0 Lsize= 373kB time=-00:00:00.03 bitrate=N/A speed=N/A video:455kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: unknown [libx264 @ 0x7fc1e300c200] frame I:1 Avg QP: 7.95 size:249829 [libx264 @ 0x7fc1e300c200] frame P:16 Avg QP:15.74 size:196043 [libx264 @ 0x7fc1e300c200] frame B:47 Avg QP:18.47 size:132649 [libx264 @ 0x7fc1e300c200] consecutive B-frames: 1.6% 0.0% 4.7% 93.8% [libx264 @ 0x7fc1e300c200] mb I I16..4: 73.3% 3.1% 23.5% [libx264 @ 0x7fc1e300c200] mb P I16..4: 0.5% 1.5% 10.7% P16..4: 4.4% 5.1% 5.7% 0.0% 0.0% skip:72.0% [libx264 @ 0x7fc1e300c200] mb B I16..4: 0.0% 0.4% 5.2% B16..8: 6.0% 6.4% 5.8% direct: 2.4% skip:73.7% L0:35.1% L1:34.2% BI:30.7% [libx264 @ 0x7fc1e300c200] 8x8 transform intra:7.8% inter:9.0% [libx264 @ 0x7fc1e300c200] coded y,uvDC,uvAC intra: 82.5% 81.5% 71.4% inter: 12.0% 10.7% 7.0% [libx264 @ 0x7fc1e300c200] i16 v,h,dc,p: 95% 2% 3% 1% [libx264 @ 0x7fc1e300c200] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 9% 11% 24% 7% 10% 8% 11% 8% 12% [libx264 @ 0x7fc1e300c200] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 11% 13% 14% 9% 11% 10% 12% 8% 12% [libx264 @ 0x7fc1e300c200] i8c dc,h,v,p: 65% 14% 14% 7% [libx264 @ 0x7fc1e300c200] Weighted P-Frames: Y:25.0% UV:6.2% [libx264 @ 0x7fc1e300c200] ref P L0: 57.7% 14.5% 14.5% 10.6% 2.6% [libx264 @ 0x7fc1e300c200] ref B L0: 92.5% 5.9% 1.5% [libx264 @ 0x7fc1e300c200] ref B L1: 97.6% 2.4% [libx264 @ 0x7fc1e300c200] kb/s:30065.75 Conversion failed! \----------------------------- OpenGL version: 4.1 Metal - 83 OpenGL renderer: Apple M2 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,10 Model Number: MNWD3LL/A Chip: Apple M2 Pro Total Number of Cores: 12 (8 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 8419.41.10 OS Loader Version: 8419.41.10 Software: System Software Overview: System Version: macOS 13.0 (22A8380) Kernel Version: Darwin 22.1.0 Time since boot: 9 days, 9 hours, 50 minutes Graphics/Displays: Apple M2 Pro: Chipset Model: Apple M2 Pro Type: GPU Bus: Built-In Total Number of Cores: 19 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect closed normal Input/Output nonchimerax all ChimeraX