id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9951 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 huixia.wang@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.4-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001e03f9e00 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-10-10 10:32:22.00 -0700"",""app_version"":""1.6.1"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.4 (22F66)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""203ACB89-3E5F-4ECC-99BE-F400E20017C1""} { ""uptime"" : 1600000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,7"", ""coalitionID"" : 53837, ""osVersion"" : { ""train"" : ""macOS 13.4"", ""build"" : ""22F66"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-10-10 10:32:19.0696 -0700"", ""incident"" : ""203ACB89-3E5F-4ECC-99BE-F400E20017C1"", ""pid"" : 38141, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-10-09 23:17:21.7374 -0700"", ""procStartAbsTime"" : 38668721468325, ""procExitAbsTime"" : 38873527388715, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""15C3BBB9-70AB-596D-A743-E3EB4BFA1169"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""D59CF081-A74E-8BEF-D765-9ACE6629ED32"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 3914, ""sleepWakeUUID"" : ""8B2D0F1E-11CE-45A4-A034-C38989CD9FD4"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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""treatmentId"" : ""6dd670af-0633-45e4-ae5f-122ae4df02be"", ""experimentId"" : ""64406ba83deb637ac8a04419"", ""deploymentId"" : 900000017 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/huixiawang/Downloads/cryosparc_P15_J178_010_volume_map.mrc > format mrc Opened cryosparc_P15_J178_010_volume_map.mrc as #1, grid size 360,360,360, pixel 0.835, shown at level 0.00949, step 2, values float32 > volume #1 step 1 > volume #1 level 0.0607 > volume #1 level 0.08433 > open /Users/huixiawang/Desktop/Gaq-5d09.pdb Chain information for Gaq-5d09.pdb #2 --- Chain | Description A | No description available > ui mousemode right select Drag select of 126 atoms, 314 residues, 104 bonds > ui mousemode right ""translate selected models"" > view matrix models #2,1,0,0,6.3538,0,1,0,98.994,0,0,1,69.85 > set bgColor white > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.70048,0.71294,-0.032461,16.882,-0.71168,0.6944,-0.10639,89.605,-0.053308,0.097625,0.99379,71.221 > view matrix models > #2,0.85453,0.26242,0.44824,-4.3931,-0.21576,0.96435,-0.15325,100.9,-0.47248,0.034243,0.88068,69.314 > view matrix models > #2,0.17481,0.96178,0.21076,8.3549,-0.3691,0.26246,-0.89156,109.82,-0.9128,0.078062,0.40087,80.447 > view matrix models > #2,0.69203,0.61518,0.37769,2.3585,-0.427,0.77071,-0.47294,105.23,-0.58203,0.16601,0.79604,73.141 > view matrix models > #2,-0.034097,0.97284,0.22894,5.8472,-0.23756,0.21462,-0.94737,112.05,-0.97078,-0.086689,0.22379,82.432 > view matrix models > #2,0.50881,0.85991,0.040784,15.244,-0.60379,0.39023,-0.6951,103.58,-0.61364,0.32905,0.71776,78.123 > view matrix models > #2,-0.94257,0.24245,0.22976,-16.381,-0.20688,0.11628,-0.97143,111.37,-0.26224,-0.96317,-0.059443,82.988 > view matrix models > #2,-0.6873,0.2039,-0.69717,14.278,0.72582,0.23049,-0.64812,112.92,0.028542,-0.95147,-0.30641,93.826 > view matrix models > #2,-0.47116,0.62578,-0.62162,21.601,0.75898,-0.071432,-0.64719,107.9,-0.4494,-0.77672,-0.4413,96.197 > view matrix models > #2,0.048536,0.90301,-0.42687,25.784,0.57309,-0.37521,-0.72855,103.16,-0.81805,-0.20928,-0.53572,105.37 > view matrix models > #2,0.44592,0.87914,-0.16811,21.414,0.45107,-0.38294,-0.80616,104.17,-0.7731,0.28365,-0.56732,115.51 > view matrix models > #2,0.36554,0.71299,-0.59835,30.989,-0.12901,-0.59782,-0.79118,93.975,-0.92181,0.3664,-0.12655,101.79 > view matrix models > #2,0.6399,0.20246,-0.74131,29.214,-0.69152,-0.26902,-0.6704,90.277,-0.33515,0.94162,-0.032137,115.03 > view matrix models > #2,0.98418,0.16647,-0.060702,11.013,0.061064,-0.64023,-0.76576,94.385,-0.16634,0.74993,-0.64026,132.22 > view matrix models > #2,0.80528,-0.026102,-0.59232,22.254,-0.59286,-0.046212,-0.80398,99.362,-0.0063867,0.99859,-0.052688,120.04 > view matrix models > #2,0.91537,0.25991,0.3075,0.54738,0.3956,-0.7226,-0.56687,90.193,0.074863,0.64054,-0.76426,136.6 > view matrix models > #2,0.92692,-0.17754,-0.3306,12.716,-0.25068,-0.94854,-0.19346,68.012,-0.27925,0.2622,-0.92373,131.24 > view matrix models > #2,0.99989,0.014357,0.0021135,6.5407,0.013608,-0.87699,-0.48031,80.872,-0.0050425,0.48029,-0.8771,136.45 > view matrix models > #2,0.93909,-0.26455,-0.21937,7.8566,-0.34184,-0.78485,-0.51687,79.992,-0.035439,0.56038,-0.82748,136.02 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.93909,-0.26455,-0.21937,27.789,-0.34184,-0.78485,-0.51687,134.73,-0.035439,0.56038,-0.82748,183.8 > view matrix models > #2,0.93909,-0.26455,-0.21937,12.446,-0.34184,-0.78485,-0.51687,76.699,-0.035439,0.56038,-0.82748,181.52 > view matrix models > #2,0.93909,-0.26455,-0.21937,0.17654,-0.34184,-0.78485,-0.51687,42.628,-0.035439,0.56038,-0.82748,186.03 > view matrix models > #2,0.93909,-0.26455,-0.21937,0.71569,-0.34184,-0.78485,-0.51687,240.79,-0.035439,0.56038,-0.82748,224.76 > view matrix models > #2,0.93909,-0.26455,-0.21937,-0.033283,-0.34184,-0.78485,-0.51687,147.71,-0.035439,0.56038,-0.82748,223.16 > view matrix models > #2,0.93909,-0.26455,-0.21937,71.058,-0.34184,-0.78485,-0.51687,225.92,-0.035439,0.56038,-0.82748,232.75 > view matrix models > #2,0.93909,-0.26455,-0.21937,165.17,-0.34184,-0.78485,-0.51687,154.88,-0.035439,0.56038,-0.82748,222.09 > view matrix models > #2,0.93909,-0.26455,-0.21937,138.58,-0.34184,-0.78485,-0.51687,84.071,-0.035439,0.56038,-0.82748,215.07 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.81556,0.35561,0.4565,127.33,0.55778,-0.69314,-0.45656,93.035,0.15406,0.62698,-0.76365,216.21 > view matrix models > #2,0.77458,0.38278,0.50349,125.93,0.60666,-0.67476,-0.42031,92.737,0.17885,0.63101,-0.75487,216.26 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.77458,0.38278,0.50349,134.3,0.60666,-0.67476,-0.42031,34.381,0.17885,0.63101,-0.75487,229.05 > view matrix models > #2,0.77458,0.38278,0.50349,132.85,0.60666,-0.67476,-0.42031,29.938,0.17885,0.63101,-0.75487,231.61 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.81114,0.37881,0.44558,134.95,0.58473,-0.54019,-0.60521,37.82,0.01144,0.75146,-0.65968,229.07 > view matrix models > #2,0.93418,0.029184,0.35562,132.82,0.29746,-0.61413,-0.731,37.47,0.19706,0.78867,-0.58238,229.24 > view matrix models > #2,0.91493,0.019554,0.40314,130.98,0.28425,-0.74033,-0.60919,31.332,0.28655,0.67196,-0.6829,231.21 > view matrix models > #2,0.9015,0.058647,0.42878,130.74,0.33041,-0.73315,-0.59441,31.473,0.2795,0.67753,-0.68031,231.15 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.9015,0.058647,0.42878,166.2,0.33041,-0.73315,-0.59441,149.79,0.2795,0.67753,-0.68031,225.29 > view matrix models > #2,0.9015,0.058647,0.42878,146.94,0.33041,-0.73315,-0.59441,144.01,0.2795,0.67753,-0.68031,217.63 > view matrix models > #2,0.9015,0.058647,0.42878,147.18,0.33041,-0.73315,-0.59441,155.12,0.2795,0.67753,-0.68031,215.37 > view matrix models > #2,0.9015,0.058647,0.42878,146.81,0.33041,-0.73315,-0.59441,154.7,0.2795,0.67753,-0.68031,216.84 > ui tool show ""Fit in Map"" > fitmap #2 inMap #1 Fit molecule Gaq-5d09.pdb (#2) to map cryosparc_P15_J178_010_volume_map.mrc (#1) using 2692 atoms average map value = 0.1823, steps = 96 shifted from previous position = 2.11 rotated from previous position = 3.07 degrees atoms outside contour = 1193, contour level = 0.084328 Position of Gaq-5d09.pdb (#2) relative to cryosparc_P15_J178_010_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.91169097 0.07120380 0.40465986 148.08761774 0.31090405 -0.76343928 -0.56612643 154.86725848 0.26862288 0.64194274 -0.71815825 218.34068813 Axis 0.97494916 0.10978605 0.19344551 Axis point 0.00000000 37.24081015 118.06731108 Rotation angle (degrees) 141.71635769 Shift along axis 203.61718823 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.93071,0.27187,0.24466,156.78,0.36352,-0.76141,-0.53675,154.53,0.040363,0.5885,-0.80749,217.83 > fitmap #2 inMap #1 Fit molecule Gaq-5d09.pdb (#2) to map cryosparc_P15_J178_010_volume_map.mrc (#1) using 2692 atoms average map value = 0.458, steps = 128 shifted from previous position = 5.7 rotated from previous position = 23.1 degrees atoms outside contour = 156, contour level = 0.084328 Position of Gaq-5d09.pdb (#2) relative to cryosparc_P15_J178_010_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.76840904 0.61614316 0.17295998 159.72628965 0.59002371 -0.57742279 -0.56431813 161.17503046 -0.24782972 0.53567764 -0.80723596 218.06355615 Axis 0.93376469 0.35720007 -0.02217229 Axis point 0.00000000 11.21866547 126.46348859 Rotation angle (degrees) 143.91312669 Shift along axis 201.88353417 > color #1 #bfbf95ff models > color #1 #bfb551ff models > color #1 #bfba1eff models > color #1 #bfbb40ff models > color #1 #bfba1aff models > color #1 #bfba1bff models > color #1 #c9c380ff models > color #1 #c9c384ff models > color #1 #c9c582ff models > volume #1 level 0.1127 > view > volume #1 level 0.1289 > color #1 #c9c5828f models > color #1 #c9c58282 models > ui mousemode right select > select clear > volume #1 level 0.1411 > volume #1 level 0.1452 > color #1 #c9c58259 models > select clear > show atoms > hide atoms > show atoms > ui mousemode right select > select #1 2 models selected > view > view sel > select clear Drag select of 1 cryosparc_P15_J178_010_volume_map.mrc > ui mousemode right select > select clear > ui mousemode right zoom > hide atoms > save /Users/huixiawang/Desktop/J178-Gaq-F10-Apo.jpg width 864 height 723 > supersample 3 Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16R0005ULL/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 8422.121.1 OS Loader Version: 8422.121.1 Software: System Software Overview: System Version: macOS 13.4 (22F66) Kernel Version: Darwin 22.5.0 Time since boot: 43 days, 22 hours, 3 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: LG Ultra HD: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Main Display: Yes Mirror: On Mirror Status: Master Mirror Online: Yes Rotation: Supported Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Mirror: On Mirror Status: Hardware Mirror Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.21.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX