id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
981	Command to select atoms of pseudobonds	meng@…	Tom Goddard	"Want a command like ""select atoms pbonds"" that selects the atom endpoints of pseudobonds.

Begin forwarded message:

From: Elaine Meng 
Subject: how to select pbond end atoms in ChimeraX?
Date: January 2, 2018 at 1:53:04 PM PST
To: Eric Pettersen 
Cc: Tom Goddard 

Maybe I’m having a brain glitch, but now that “hbonds” and “pbonds” specify just the pseudobonds themselves, I can’t think of an easy way to specify (or select) their endpoint atoms.   I guess we could add a “select” option to the hbonds command at the time of H-bond detection (analogous to the option already in “contacts”) but we should have a way to do it after the fact too, for example to select all atoms involved in hbonds from an mmCIF file. 

...

Elaine

"	enhancement	assigned	moderate		Structure Analysis				Eric Pettersen				all	ChimeraX