id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9796 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.5.2-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001f30f2080 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-09-18 10:33:20.00 +0200"",""app_version"":""1.6.1"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.5.2 (22G91)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""E16F71C7-D830-4611-BDD9-4417324F1630""} { ""uptime"" : 59000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,6"", ""coalitionID"" : 1003, ""osVersion"" : { ""train"" : ""macOS 13.5.2"", ""build"" : ""22G91"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-09-18 10:33:06.6607 +0200"", ""incident"" : ""E16F71C7-D830-4611-BDD9-4417324F1630"", ""pid"" : 2225, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-09-13 14:10:09.3610 +0200"", ""procStartAbsTime"" : 3538659447, ""procExitAbsTime"" : 1423397071997, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""33AC9F69-462B-5BF4-85B9-A09E5C1125CE"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""8CD86EF6-8702-0484-11FC-43DCE9C516F0"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 10, ""sleepWakeUUID"" : ""EA826A5F-4250-458A-BAB6-4788B494AC50"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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""rolloutId"" : ""62699e1ec1ff2978b47f6c3b"", ""factorPackIds"" : { ""SIRI_FIND_MY_CONFIGURATION_FILES"" : ""631f72d1de559130376df1fb"" }, ""deploymentId"" : 240000023 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 } ], ""experiments"" : [ { ""treatmentId"" : ""6dd670af-0633-45e4-ae5f-122ae4df02be"", ""experimentId"" : ""64406ba83deb637ac8a04419"", ""deploymentId"" : 900000017 }, { ""treatmentId"" : ""a092db1b-c401-44fa-9c54-518b7d69ca61"", ""experimentId"" : ""64a844035c85000c0f42398a"", ""deploymentId"" : 400000019 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > help help:quickstart > open > /Users/lulu/Documents/PostDoc/ParD,E/Structure/predicted/AF-A0A0N9MZH1-F1-model_v4_YpstParE.pdb Summary of feedback from opening /Users/lulu/Documents/PostDoc/ParD,E/Structure/predicted/AF-A0A0N9MZH1-F1-model_v4_YpstParE.pdb --- warning | Ignored bad PDB record found on line 37 DBREF XXXX A 1 99 UNP A0A0N9MZH1 A0A0N9MZH1_YERPU 1 99 AF-A0A0N9MZH1-F1-model_v4_YpstParE.pdb title: Alphafold monomer V2.0 prediction for toxin (A0A0N9MZH1) [more info...] Chain information for AF-A0A0N9MZH1-F1-model_v4_YpstParE.pdb #1 --- Chain | Description A | TOXIN > show atoms > hide atoms > show cartoons > hide cartoons > show cartoons > style stick Changed 824 atom styles > style stick Changed 824 atom styles > style sphere Changed 824 atom styles > color byhetero > color bychain > color bypolymer > rainbow > coulombic Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for AF-A0A0N9MZH1-F1-model_v4_YpstParE.pdb_A SES surface #1.1: minimum, -14.72, mean -2.50, maximum 9.53 To also show corresponding color key, enter the above coulombic command and add key true > coulombic Coulombic values for AF-A0A0N9MZH1-F1-model_v4_YpstParE.pdb_A SES surface #1.1: minimum, -14.72, mean -2.50, maximum 9.53 To also show corresponding color key, enter the above coulombic command and add key true > style sphere Changed 824 atom styles > style stick Changed 824 atom styles > color byhetero > color bychain > color bypolymer > rainbow > coulombic Coulombic values for AF-A0A0N9MZH1-F1-model_v4_YpstParE.pdb_A SES surface #1.1: minimum, -14.72, mean -2.50, maximum 9.53 To also show corresponding color key, enter the above coulombic command and add key true > hide surfaces > show surfaces > hide surfaces > style stick Changed 824 atom styles > show atoms > hide atoms > show atoms > style ball Changed 824 atom styles > hide surfaces > hide cartoons > ~hbonds > set bgColor white > view > ui tool show ""Side View"" > show cartoons > hide atoms > show cartoons > show atoms > hide cartoons > ui mousemode right select Drag select of 1 atoms > select clear > ui mousemode right rotate > ui mousemode right translate > ui mousemode right zoom > select /A 824 atoms, 843 bonds, 99 residues, 1 model selected > select subtract #1 1 model selected > select add #1 824 atoms, 843 bonds, 99 residues, 1 model selected > select subtract #1 1 model selected > select add #1 824 atoms, 843 bonds, 99 residues, 1 model selected > select subtract #1 1 model selected > hide #!1 models > show #!1 models > ui tool show ""Side View"" > view orient > hide atoms > show cartoons > open /Users/lulu/Downloads/ChimeraX/AlphaFold/prediction_1/best_model.pdb Chain information for best_model.pdb #2 --- Chain | Description A | No description available B | No description available > hide #!1 models > view > rainbow #2 > color #2 bypolymer > sym #1 best_model 1 copies t Expected a keyword > sym #1 assemble 1 copies t Expected a keyword > view orient > help sym > sym #1 assmebly 1 Expected a keyword > sym #1 assmebly best_model Expected a keyword > sym #1 assmebly 2 Expected a keyword > sym #1 assmebly 2 copies true Expected a keyword > sym #2 assmebly 1 Expected a keyword > sym #2 best_model.pdb mmCIF Assemblies --- > open 3kxe Summary of feedback from opening 3kxe fetched from pdb --- note | Fetching compressed mmCIF 3kxe from http://files.rcsb.org/download/3kxe.cif 3kxe title: A conserved mode of protein recognition and binding in a ParD-ParE toxin- antitoxin complex [more info...] Chain information for 3kxe #3 --- Chain | Description | UniProt A B | Toxin protein parE-1 | B8H242_CAUCN 1-96 C D | Antitoxin protein parD-1 | B8H243_CAUCN 1-88 > select add #3 2731 atoms, 2731 bonds, 383 residues, 1 model selected > select subtract #3 Nothing selected > select add #3 2731 atoms, 2731 bonds, 383 residues, 1 model selected > select subtract #3 Nothing selected > zoom 1 > turn 180 Expected an axis vector or a keyword > zoom 1 > turn x 180 > zoom 1 > turn x 180 > zoom 1 > turn x 180 > zoom 1 > turn x 180 > zoom 1 > turn x 180 > zoom 1 > turn x 180 > zoom 1 > turn x 180 > zoom 1 > turn x 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn y 180 > zoom 1 > turn z 180 > zoom 1 > turn z 180 > zoom 1 > turn z 180 > zoom 1 > turn z 180 > zoom 1 > turn z 180 > zoom 1 > turn z 180 > surface 1 Expected an atoms specifier or a keyword > surface 3kxe Expected an atoms specifier or a keyword > hide /a > hide #3 models > show Ca > cartoon style modeHelix tube > cartoon style modeHelix helix Invalid ""modeHelix"" argument: Should be one of 'default', 'tube', or 'wrap' > cartoon style modeHelix default > cartoon style modeHelix wrap > cartoon style modeHelix tube > close > open 5vms Summary of feedback from opening 5vms fetched from pdb --- notes | Fetching compressed mmCIF 5vms from http://files.rcsb.org/download/5vms.cif Fetching CCD CA from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/CA/CA.cif 5vms title: CryoEM structure of Xenopus KCNQ1 channel [more info...] Chain information for 5vms #1 --- Chain | Description | UniProt A | Potassium voltage-gated channel subfamily KQT member 1 | KCNQ1_XENLA 67-610 B | Calmodulin | CALM_HUMAN 1-149 Non-standard residues in 5vms #1 --- CA — calcium ion 5vms mmCIF Assemblies --- 1| complete point assembly 2| point asymmetric unit 3| point asymmetric unit, std point frame > sym #1 assmebly 1 copies t Expected a keyword > sym #1 assmebly 1 Expected a keyword > sym #1 assmebly 1.1 Expected a keyword > sym #1 assmebly 5vms Expected a keyword > close #1 > open 5vms format mmcif fromDatabase pdb 5vms title: CryoEM structure of Xenopus KCNQ1 channel [more info...] Chain information for 5vms #1 --- Chain | Description | UniProt A | Potassium voltage-gated channel subfamily KQT member 1 | KCNQ1_XENLA 67-610 B | Calmodulin | CALM_HUMAN 1-149 Non-standard residues in 5vms #1 --- CA — calcium ion 5vms mmCIF Assemblies --- 1| complete point assembly 2| point asymmetric unit 3| point asymmetric unit, std point frame > sym #1 assembly 1 Made 4 copies for 5vms assembly 1 > sym #1 assembly 1 copies true Made 4 copies for 5vms assembly 1 > zoom 1.1 > turn x 180 > surface /a > hide /a cartoons > hide /b > show Ca > hide pbonds > cartoon style modeHelix tube > lighting gentle > set silhouettes true > set silhouetteDepthJump 0.02 > size ions atomRadius 1.6 Changed 27 atom radii > color modify ions hue +45 > rainbow palette pubu-5 > help palette > rainbow polymers palette pubu-5 > save ""/Users/lulu/Downloads/ChimeraX/practice/5vms practice.cxs"" > save /Users/lulu/Downloads/ChimeraX/practice/5vms.png width 1152 height 903 > supersample 3 > zoom 5vms Expected a number > 0 or a keyword > zoom #1 Expected a number > 0 or a keyword > zoom 1 > zoom 2 > zoom 3 > zoom 1 > save ""/Users/lulu/Downloads/ChimeraX/practice/5vms practice.cxs"" Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M2 Max OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,6 Model Number: MNWE3KS/A Chip: Apple M2 Max Total Number of Cores: 12 (8 performance and 4 efficiency) Memory: 32 GB System Firmware Version: 8422.141.2 OS Loader Version: 8422.141.2 Software: System Software Overview: System Version: macOS 13.5.2 (22G91) Kernel Version: Darwin 22.6.0 Time since boot: 4 days, 20 hours, 40 minutes Graphics/Displays: Apple M2 Max: Chipset Model: Apple M2 Max Type: GPU Bus: Built-In Total Number of Cores: 38 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal SyncMaster: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX