id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9787 ArtiaX session save: Unknown class name 'ArtiaX' matthias.vorlaender@… Utz Ermel "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Hi, when ArtiaX is running it is impossible to save a session. A fix would be very much appreciated since preparing tomographic sessions is a lot of wotk! Thanks for deceloping thsi incredible tool. Best wishes from Swtizerland, Matthias Log: > set selectionWidth 4 UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 138, in invoke return self._func(self._name, data) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site-packages/chimerax/isolde/tool.py"", line 42, in _launch_main_gui tw = self.tool_window = IsoldeMainWin(self) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site-packages/chimerax/isolde/ui/main_win.py"", line 54, in __init__ self.general_tab = GeneralTab(self.session, self.isolde, self, tabw) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site-packages/chimerax/isolde/ui/ui_base.py"", line 226, in __init__ self.populate() File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site- packages/chimerax/isolde/ui/general_tab/__init__.py"", line 26, in populate self.addWidget(ComputationalPlatformPanel(session, isolde, parent, gui)) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site- packages/chimerax/isolde/ui/general_tab/platform.py"", line 14, in __init__ cpd = self.content = ComputationalPlatformDialog(session, isolde, gui, self) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site- packages/chimerax/isolde/ui/general_tab/platform.py"", line 26, in __init__ self._populate_platform_combo_box() File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site- packages/chimerax/isolde/ui/general_tab/platform.py"", line 36, in _populate_platform_combo_box platform_names = list(sorted(platform_names, key=lambda p:sim_params.platforms.index(p))) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site- packages/chimerax/isolde/ui/general_tab/platform.py"", line 36, in platform_names = list(sorted(platform_names, key=lambda p:sim_params.platforms.index(p))) ValueError: tuple.index(x): x not in tuple Error processing trigger ""new frame"": ValueError: tuple.index(x): x not in tuple File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site- packages/chimerax/isolde/ui/general_tab/platform.py"", line 36, in platform_names = list(sorted(platform_names, key=lambda p:sim_params.platforms.index(p))) See log for complete Python traceback. > open /Users/matthias.vorlaender/Downloads/FileZila/649.rec format imodmap Summary of feedback from opening /Users/matthias.vorlaender/Downloads/FileZila/649.rec --- note | /Users/matthias.vorlaender/Downloads/FileZila/649.rec: invalid cell angles 0,0,0 must be between 0 and 180. Opened 649.rec as #1, grid size 1024,1024,512, pixel 1, shown at step 1, values float32 > vop gauss #1 sd 3 Opened 649.rec gaussian as #2, grid size 1024,1024,512, pixel 1, shown at step 1, values float32 > artiax start Using preset: ArtiaX / Artiax Default Preset expands to these ChimeraX commands: set bgColor black lighting depthCue false camera ortho > artiax add tomo #2 Opened 649.rec gaussian as #3.1.1, grid size 1024,1024,512, pixel 1, shown at level 52.8, step 1, values float32 > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > artiax tomo #3.1.1 pixelSize 7.6 > artiax view xy > artiax tomo #3.1.1 pixelSize 7.6 > artiax view xy > artiax tomo #3.1.1 pixelSize 7.6 > artiax view xy > artiax tomo #3.1.1 contrastCenter 2.1908 > artiax tomo #3.1.1 contrastWidth 85.9912 > view > view orient > artiax tomo #3.1.1 slice 264 > opem 7apk Unknown command: opem 7apk > artiax tomo #3.1.1 slice 273 > artiax tomo #3.1.1 slice 296 > artiax tomo #3.1.1 slice 256 > open /Users/matthias.vorlaender/Downloads/emd_16753_additional_1.map Opened emd_16753_additional_1.map as #2, grid size 180,180,180, pixel 3, shown at level 0.00594, step 1, values float32 > view [Repeated 1 time(s)] > hide #!3 models > color #2 #57ba77ff models > show #!3 models > ui mousemode right ""mark surface"" > marker #4 position 2854,1719,1942 color yellow radius 1 > marker change #4 radius 100 > hide #!3 models > select add #2 1 atom, 1 residue, 3 models selected > marker #4 position 313.5,151.8,275.6 color yellow radius 100 > marker #4 position 324.1,131.9,373 color yellow radius 100 > marker #4 position 380.2,94.46,446.9 color yellow radius 100 > close #4 > show #!3 models > marker #4 position 2854,1692,1942 color yellow radius 100 > ui mousemode right ""translate selected models"" > select add #2 1 atom, 1 residue, 3 models selected > view matrix models > #2,1,0,0,57.967,0,1,0,43.607,0,0,1,0,#4,1,0,0,57.967,0,1,0,43.607,0,0,1,0 > select subtract #4 2 models selected > view matrix models #2,1,0,0,2540.8,0,1,0,1461.8,0,0,1,0 > view matrix models #2,1,0,0,2614.7,0,1,0,1469.5,0,0,1,0 > view matrix models #2,1,0,0,2801,0,1,0,1389.1,0,0,1,1626.1 > view matrix models #2,1,0,0,2594.3,0,1,0,1476.3,0,0,1,1694.9 > view matrix models > #2,0.017747,0.12525,-0.99197,3167.8,0.05727,0.99037,0.12607,1420,0.9982,-0.059048,0.010403,1782.9 > view matrix models > #2,-0.18127,0.16256,-0.96991,3203.8,0.13953,0.98052,0.13826,1396.2,0.97349,-0.11027,-0.20042,1876.1 > view matrix models > #2,-0.43289,0.2024,-0.87843,3229.4,0.16974,0.97534,0.14108,1388.5,0.88532,-0.088035,-0.45657,1982.3 > view matrix models > #2,-0.43289,0.2024,-0.87843,3245.9,0.16974,0.97534,0.14108,1359,0.88532,-0.088035,-0.45657,1983.3 > view matrix models > #2,-0.18893,0.84408,-0.50183,2876.9,0.33333,0.53581,0.77576,1214.5,0.92369,-0.020709,-0.38259,1929.3 > view matrix models > #2,-0.049309,0.73917,-0.67171,2926.1,-0.29114,0.63268,0.7176,1376.9,0.95541,0.23094,0.184,1657.3 > view matrix models > #2,-0.049309,0.73917,-0.67171,2820.5,-0.29114,0.63268,0.7176,1277.3,0.95541,0.23094,0.184,1639.5 > view matrix models > #2,-0.049309,0.73917,-0.67171,2864.5,-0.29114,0.63268,0.7176,1287.6,0.95541,0.23094,0.184,1632.9 > volume #2 level 0.00481 > view matrix models > #2,-0.049309,0.73917,-0.67171,2895.9,-0.29114,0.63268,0.7176,1282.4,0.95541,0.23094,0.184,1628.8 > view matrix models > #2,-0.07848,0.7193,-0.69026,2917.3,-0.16522,0.67343,0.72055,1229.1,0.98313,0.1706,0.065995,1677 > view matrix models > #2,-0.097844,0.71087,-0.69649,2928.1,-0.12146,0.68608,0.71731,1212.5,0.98776,0.15478,0.019215,1695.9 > view matrix models > #2,-0.18285,0.68695,-0.70332,2964.8,-0.055792,0.70698,0.70503,1189.6,0.98156,0.16815,-0.090943,1732.4 > view matrix models > #2,-0.11797,0.70439,-0.69994,2937.6,-0.097127,0.69329,0.71408,1203.7,0.98826,0.15222,-0.013373,1707.7 > view matrix models > #2,-0.13483,0.78683,-0.60226,2886.9,-0.063054,0.59977,0.79769,1189.2,0.98886,0.14552,-0.031252,1715.6 > view matrix models > #2,-0.15564,0.77957,-0.60667,2897.2,-0.022809,0.61115,0.79119,1175.2,0.98755,0.13698,-0.077338,1734.3 > view matrix models > #2,-0.15564,0.77957,-0.60667,2900.2,-0.022809,0.61115,0.79119,1197.5,0.98755,0.13698,-0.077338,1732.7 > view matrix models > #2,-0.15564,0.77957,-0.60667,2901,-0.022809,0.61115,0.79119,1205.7,0.98755,0.13698,-0.077338,1714.7 > view matrix models > #2,-0.17147,0.77703,-0.60565,2906.6,-0.022168,0.61156,0.79089,1205.5,0.98494,0.14904,-0.08764,1715.8 > view matrix models > #2,-0.3464,0.6665,-0.66014,3012.6,-0.043053,0.69167,0.72093,1214.8,0.9371,0.27815,-0.2109,1745.5 > view matrix models > #2,-0.26629,0.86077,-0.43378,2855.1,0.034685,0.45829,0.88812,1195.3,0.96327,0.22146,-0.1519,1732 > view matrix models > #2,-0.26629,0.86077,-0.43378,2837,0.034685,0.45829,0.88812,1208,0.96327,0.22146,-0.1519,1734.7 > view matrix models > #2,-0.24531,0.86198,-0.44364,2833.2,0.0031603,0.45833,0.88878,1218.1,0.96944,0.21663,-0.11516,1721.3 > volume #2 level 0.004055 > view matrix models > #2,-0.24531,0.86198,-0.44364,2840.2,0.0031603,0.45833,0.88878,1201.3,0.96944,0.21663,-0.11516,1716.9 > view matrix models > #2,-0.24531,0.86198,-0.44364,2849.2,0.0031603,0.45833,0.88878,1197.8,0.96944,0.21663,-0.11516,1716.3 > view matrix models > #2,-0.32172,0.84002,-0.43687,2873.8,0.03461,0.47153,0.88117,1187.8,0.9462,0.26837,-0.18077,1726.2 > vop gauss #2 sd 3 Opened emd_16753_additional_1.map gaussian as #5, grid size 180,180,180, pixel 3, shown at step 1, values float32 > volume #5 level 0.001529 > view matrix models > #2,-0.32172,0.84002,-0.43687,2873.8,0.03461,0.47153,0.88117,1187.8,0.9462,0.26837,-0.18077,1726.2 > volume #5 level 0.005939 > view matrix models > #2,-0.32172,0.84002,-0.43687,2873.8,0.03461,0.47153,0.88117,1187.8,0.9462,0.26837,-0.18077,1726.2 > view matrix models > #2,-0.32172,0.84002,-0.43687,2834.7,0.03461,0.47153,0.88117,1159.9,0.9462,0.26837,-0.18077,1727.3 > volume #5 level 0.004804 > vop gauss #2 sd 5 Opened emd_16753_additional_1.map gaussian as #6, grid size 180,180,180, pixel 3, shown at step 1, values float32 > volume #6 level 0.003951 > view matrix models > #2,-0.32172,0.84002,-0.43687,2834.7,0.03461,0.47153,0.88117,1159.9,0.9462,0.26837,-0.18077,1727.3 > select add #6 4 models selected > view matrix models > #2,0.21806,0.79374,-0.56782,2743.3,-0.24335,0.60767,0.75599,1238.2,0.94511,-0.026672,0.32566,1645.6,#6,0.21806,0.79374,-0.56782,2743.3,-0.24335,0.60767,0.75599,1238.2,0.94511,-0.026672,0.32566,1645.6 > view matrix models > #2,0.281,0.78967,-0.5454,2720.3,-0.32997,0.61315,0.71775,1272.3,0.9012,-0.021725,0.43286,1621.9,#6,0.281,0.78967,-0.5454,2720.3,-0.32997,0.61315,0.71775,1272.3,0.9012,-0.021725,0.43286,1621.9 > view matrix models > #2,0.281,0.78967,-0.5454,2735.1,-0.32997,0.61315,0.71775,1271.4,0.9012,-0.021725,0.43286,1617.3,#6,0.281,0.78967,-0.5454,2735.1,-0.32997,0.61315,0.71775,1271.4,0.9012,-0.021725,0.43286,1617.3 > artiax tomo #3.1.1 slice 253 > view > view orient > view > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > view matrix models > #2,0.34342,0.80043,-0.4913,2698.1,-0.50326,0.59851,0.62332,1352.3,0.79297,0.033189,0.60836,1575.6,#6,0.34342,0.80043,-0.4913,2698.1,-0.50326,0.59851,0.62332,1352.3,0.79297,0.033189,0.60836,1575.6 > hide #!6 models > show #!6 models > hide #!6 models > view matrix models > #2,0.34342,0.80043,-0.4913,2698.1,-0.50326,0.59851,0.62332,1352.3,0.79297,0.033189,0.60836,1575.6,#6,0.34342,0.80043,-0.4913,2698.1,-0.50326,0.59851,0.62332,1352.3,0.79297,0.033189,0.60836,1575.6 > show #!6 models > view matrix models > #2,0.47659,0.8283,-0.29458,2591.8,-0.56237,0.5448,0.62204,1383.1,0.67572,-0.1308,0.72546,1614.2,#6,0.47659,0.8283,-0.29458,2591.8,-0.56237,0.5448,0.62204,1383.1,0.67572,-0.1308,0.72546,1614.2 > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > vop vopy #6 > volume vopy #6 Expected a density maps specifier or a keyword > vop copy #6 Opened emd_16753_additional_1.map gaussian copy as #7, grid size 180,180,180, pixel 3, shown at step 1, values float32 > select add #7 6 models selected > view matrix models > #2,0.35831,0.61876,-0.69911,2809.4,-0.33729,0.78405,0.52106,1290,0.87054,0.049105,0.48963,1588.3,#6,0.35831,0.61876,-0.69911,2809.4,-0.33729,0.78405,0.52106,1290,0.87054,0.049105,0.48963,1588.3,#7,0.35831,0.61876,-0.69911,2809.4,-0.33729,0.78405,0.52106,1290,0.87054,0.049105,0.48963,1588.3 > view matrix models > #2,0.35831,0.61876,-0.69911,2939.8,-0.33729,0.78405,0.52106,1662.3,0.87054,0.049105,0.48963,1592.5,#6,0.35831,0.61876,-0.69911,2939.8,-0.33729,0.78405,0.52106,1662.3,0.87054,0.049105,0.48963,1592.5,#7,0.35831,0.61876,-0.69911,2939.8,-0.33729,0.78405,0.52106,1662.3,0.87054,0.049105,0.48963,1592.5 > view matrix models > #2,-0.85705,0.48818,-0.16476,3132.5,-0.21492,-0.62937,-0.7468,2415.8,-0.46826,-0.60464,0.64432,2081.1,#6,-0.85705,0.48818,-0.16476,3132.5,-0.21492,-0.62937,-0.7468,2415.8,-0.46826,-0.60464,0.64432,2081.1,#7,-0.85705,0.48818,-0.16476,3132.5,-0.21492,-0.62937,-0.7468,2415.8,-0.46826,-0.60464,0.64432,2081.1 > view matrix models > #2,-0.95017,0.30994,0.033283,3142.6,-0.23148,-0.63004,-0.74126,2418.6,-0.20877,-0.71203,0.67039,2031.7,#6,-0.95017,0.30994,0.033283,3142.6,-0.23148,-0.63004,-0.74126,2418.6,-0.20877,-0.71203,0.67039,2031.7,#7,-0.95017,0.30994,0.033283,3142.6,-0.23148,-0.63004,-0.74126,2418.6,-0.20877,-0.71203,0.67039,2031.7 > view sel > view matrix models > #2,-0.99647,-0.083898,-0.0039098,3273.3,0.016367,-0.14832,-0.9888,2300.7,0.082378,-0.98537,0.14917,2193.3,#6,-0.99647,-0.083898,-0.0039098,3273.3,0.016367,-0.14832,-0.9888,2300.7,0.082378,-0.98537,0.14917,2193.3,#7,-0.99647,-0.083898,-0.0039098,3273.3,0.016367,-0.14832,-0.9888,2300.7,0.082378,-0.98537,0.14917,2193.3 > view matrix models > #2,-0.9931,-0.11638,0.014607,3274.2,0.014806,-0.24792,-0.96867,2317.8,0.11635,-0.96177,0.24793,2146.2,#6,-0.9931,-0.11638,0.014607,3274.2,0.014806,-0.24792,-0.96867,2317.8,0.11635,-0.96177,0.24793,2146.2,#7,-0.9931,-0.11638,0.014607,3274.2,0.014806,-0.24792,-0.96867,2317.8,0.11635,-0.96177,0.24793,2146.2 > view matrix models > #2,-0.9931,-0.11638,0.014607,3277.9,0.014806,-0.24792,-0.96867,2243.4,0.11635,-0.96177,0.24793,2142.8,#6,-0.9931,-0.11638,0.014607,3277.9,0.014806,-0.24792,-0.96867,2243.4,0.11635,-0.96177,0.24793,2142.8,#7,-0.9931,-0.11638,0.014607,3277.9,0.014806,-0.24792,-0.96867,2243.4,0.11635,-0.96177,0.24793,2142.8 > view matrix models > #2,-0.99655,-0.081629,0.014769,3269.4,0.017967,-0.38621,-0.92224,2265,0.080985,-0.91879,0.38634,2096.5,#6,-0.99655,-0.081629,0.014769,3269.4,0.017967,-0.38621,-0.92224,2265,0.080985,-0.91879,0.38634,2096.5,#7,-0.99655,-0.081629,0.014769,3269.4,0.017967,-0.38621,-0.92224,2265,0.080985,-0.91879,0.38634,2096.5 > view > view matrix models > #2,-0.99737,-0.066754,0.028175,3261.4,-0.013845,-0.20612,-0.97843,2243,0.071121,-0.97625,0.20465,2172.7,#6,-0.99737,-0.066754,0.028175,3261.4,-0.013845,-0.20612,-0.97843,2243,0.071121,-0.97625,0.20465,2172.7,#7,-0.99737,-0.066754,0.028175,3261.4,-0.013845,-0.20612,-0.97843,2243,0.071121,-0.97625,0.20465,2172.7 > show #!6 models > hide #!6 models > show #!5 models > hide #!3 models > volume #7 level 0.005813 > volume #5 level 0.006856 > show #!3 models > view > artiax tomo #3.1.1 slice 255 > fitmap sel inMap #3 Multiple maps for sel > fitmap sel inMap #3.1 Multiple maps for sel > fitmap sel inMap #3.1.1 Multiple maps for sel > select subtract #6 4 models selected > select subtract #2 2 models selected > fitmap sel inMap #3.1.1 Fit map emd_16753_additional_1.map gaussian copy in map 649.rec gaussian using 44829 points correlation = 0.9019, correlation about mean = -0.04033, overlap = 1.266e+04 steps = 360, shift = 182, angle = 131 degrees Position of emd_16753_additional_1.map gaussian copy (#7) relative to 649.rec gaussian (#3.1.1) coordinates: Matrix rotation and translation -0.37364421 0.06068129 0.92558510 2795.35554522 0.61134176 -0.73435387 0.29493328 2086.65899855 0.69760394 0.67604894 0.23729006 1630.42566074 Axis 0.53873575 0.32226858 0.77840013 Axis point 718.92829668 815.94310760 0.00000000 Rotation angle (degrees) 159.28541324 Shift along axis 3447.54613061 > undo > view matrix models > #2,-0.99737,-0.066754,0.028175,3220.8,-0.013845,-0.20612,-0.97843,2252.1,0.071121,-0.97625,0.20465,2145.2,#7,-0.37364,0.060681,0.92559,2754.8,0.61134,-0.73435,0.29493,2095.8,0.6976,0.67605,0.23729,1602.9 > view matrix models > #2,0.64001,-0.044397,0.76708,2628.7,0.21421,0.96906,-0.12264,1921,-0.7379,0.24281,0.62972,2176.8,#7,-0.057828,0.67991,-0.73102,2898.7,-0.61212,-0.6026,-0.51204,2583.6,-0.78865,0.41786,0.45103,2022.8 > view matrix models > #2,0.43096,0.18427,0.88336,2650.1,0.76486,-0.59403,-0.24923,2002,0.47881,0.78305,-0.39694,1785.7,#7,-0.37735,0.66298,-0.64658,2969.3,0.89722,0.088823,-0.43256,1970.4,-0.22934,-0.74335,-0.62836,2443.5 > view matrix models > #2,0.46776,0.15079,0.8709,2644.6,0.72503,-0.629,-0.28051,2023,0.50549,0.76264,-0.40355,1780.9,#7,-0.33013,0.66936,-0.66556,2959.4,0.92266,0.079983,-0.37722,1952.7,-0.19926,-0.73862,-0.644,2437.9 > view matrix models > #2,0.69899,-0.26175,0.66551,2652.7,0.19385,-0.82642,-0.52863,2245.9,0.68836,0.49852,-0.52692,1774.3,#7,0.18389,0.704,-0.68598,2816.2,0.97286,-0.030626,0.22936,1823.9,0.14046,-0.70954,-0.69052,2349.4 > view matrix models > #2,0.69923,-0.031955,0.71419,2612.2,0.25755,-0.92066,-0.29335,2220.7,0.6669,0.38905,-0.63552,1807.6,#7,-0.01841,0.62798,-0.77801,2913.3,0.9633,0.21956,0.15442,1776.8,0.26779,-0.74662,-0.60897,2305.6 > view matrix models > #2,0.69923,-0.031955,0.71419,2658.5,0.25755,-0.92066,-0.29335,1974.3,0.6669,0.38905,-0.63552,1851.9,#7,-0.01841,0.62798,-0.77801,2959.7,0.9633,0.21956,0.15442,1530.5,0.26779,-0.74662,-0.60897,2349.8 > view matrix models > #2,0.9509,0.28756,-0.11447,2596.3,0.27746,-0.95589,-0.096427,1957,-0.13715,0.05993,-0.98874,2192.2,#7,0.22193,-0.24787,-0.94303,3170.8,0.90734,0.40664,0.10665,1506.5,0.35704,-0.87932,0.31515,2140.4 > view matrix models > #2,0.9509,0.28756,-0.11447,2707.9,0.27746,-0.95589,-0.096427,2022.2,-0.13715,0.05993,-0.98874,2103.3,#7,0.22193,-0.24787,-0.94303,3282.4,0.90734,0.40664,0.10665,1571.7,0.35704,-0.87932,0.31515,2051.6 > view matrix models > #2,0.9509,0.28756,-0.11447,2714.3,0.27746,-0.95589,-0.096427,2017.6,-0.13715,0.05993,-0.98874,2082.9,#7,0.22193,-0.24787,-0.94303,3288.8,0.90734,0.40664,0.10665,1567.1,0.35704,-0.87932,0.31515,2031.2 > view matrix models > #2,0.93323,0.34167,-0.1111,2711.1,0.33501,-0.93927,-0.074467,1994.6,-0.12979,0.032276,-0.99102,2085.1,#7,0.17073,-0.27267,-0.94684,3310.2,0.90793,0.41684,0.043666,1579.2,0.38278,-0.86712,0.31873,2020.1 > view matrix models > #2,0.9183,0.34859,0.18765,2689.9,0.37675,-0.9151,-0.14369,1983.1,0.12163,0.20265,-0.97167,1975.6,#7,0.019937,-0.019689,-0.99961,3295.3,0.93855,0.34492,0.011925,1598,0.34455,-0.93842,0.025356,2119.9 > view matrix models > #2,0.97834,0.16493,0.12509,2704.9,0.1861,-0.9654,-0.18266,2055.7,0.09064,0.20198,-0.97519,1986,#7,0.21758,0.020624,-0.97583,3225.3,0.91716,0.33769,0.21163,1557.9,0.33389,-0.94103,0.054559,2116.5 > view matrix models > #2,0.99445,0.05902,0.087068,2719.6,0.075393,-0.97715,-0.19874,2094.5,0.073349,0.2042,-0.97618,1991.3,#7,0.32479,0.042236,-0.94484,3183.1,0.88802,0.33016,0.32002,1541.9,0.32547,-0.94298,0.069727,2115.6 > view matrix models > #2,0.99445,0.05902,0.087068,2703.1,0.075393,-0.97715,-0.19874,2010.8,0.073349,0.2042,-0.97618,1979.3,#7,0.32479,0.042236,-0.94484,3166.6,0.88802,0.33016,0.32002,1458.2,0.32547,-0.94298,0.069727,2103.6 > view matrix models > #2,0.95157,-0.0042237,0.3074,2708.4,0.085826,-0.9565,-0.27882,2010.9,0.2952,0.2917,-0.90982,1888.5,#7,0.25385,0.26393,-0.93054,3122.4,0.9135,0.25079,0.32034,1472.7,0.31792,-0.93137,-0.17743,2161.7 > view matrix models > #2,0.95157,-0.0042237,0.3074,2731.1,0.085826,-0.9565,-0.27882,2008.1,0.2952,0.2917,-0.90982,1875.2,#7,0.25385,0.26393,-0.93054,3145.1,0.9135,0.25079,0.32034,1469.9,0.31792,-0.93137,-0.17743,2148.3 > show #!6 models > hide #!6 models > select add #6 6 models selected > select subtract #6 4 models selected > select add #5 6 models selected > view matrix models > #2,0.95279,-0.0013815,0.30362,2730.2,0.083578,-0.96016,-0.26665,2009,0.29189,0.27944,-0.91472,1879.9,#5,-0.31739,0.84052,-0.43908,2873.5,0.021968,0.46941,0.88271,1190.9,0.94804,0.27052,-0.16745,1719.8,#7,0.2539,0.25922,-0.93185,3146.3,0.90977,0.26312,0.32108,1468,0.32842,-0.92928,-0.16902,2144.2 > select subtract #7 4 models selected > select subtract #2 2 models selected > view matrix models > #5,-0.41859,0.80185,-0.4264,2907.8,0.0016291,0.47017,0.88257,1196.2,0.90817,0.36875,-0.19812,1712.6 > view matrix models > #5,-0.41384,0.73015,-0.54371,2958.3,-0.040047,0.58207,0.81215,1196.7,0.90947,0.35787,-0.21164,1718.9 > view matrix models > #5,-0.41384,0.73015,-0.54371,2978.5,-0.040047,0.58207,0.81215,1187.6,0.90947,0.35787,-0.21164,1695.5 > view matrix models > #5,-0.21257,0.82565,-0.5226,2892.5,0.16952,0.55787,0.81243,1137.5,0.96233,0.084101,-0.25855,1768.1 > view matrix models > #5,-0.22131,0.68571,-0.69341,2980,0.13881,0.72596,0.67359,1138.9,0.96527,0.052818,-0.25584,1775 > select subtract #5 Nothing selected > select add #7 2 models selected > view matrix models > #7,-0.35097,-0.01438,-0.93628,3384.6,0.89305,0.29551,-0.33931,1621.8,0.28156,-0.95523,-0.090874,2145.2 > view matrix models > #7,-0.35097,-0.01438,-0.93628,3229.9,0.89305,0.29551,-0.33931,1813.5,0.28156,-0.95523,-0.090874,2109.9 > view matrix models > #7,0.12607,0.58157,-0.80367,2908.5,-0.6879,-0.53247,-0.49323,2500.8,-0.71477,0.61503,0.33293,1853.6 > view matrix models > #7,-0.15349,0.62224,-0.76763,2964.4,0.048166,-0.7712,-0.63476,2400.4,-0.98698,-0.1344,0.0884,2187.9 > view matrix models > #7,-0.21536,-0.59485,-0.77445,3311.3,0.39246,0.67347,-0.62643,1915.3,0.8942,-0.43885,0.088412,1762.2 > view matrix models > #7,0.20002,0.60536,-0.77041,2874.1,-0.25014,-0.72869,-0.63752,2470.1,-0.94732,0.32023,0.005669,2074.2 > view matrix models > #7,0.20002,0.60536,-0.77041,2982.6,-0.25014,-0.72869,-0.63752,2408,-0.94732,0.32023,0.005669,2090.4 > view matrix models > #7,0.19534,0.60563,-0.7714,2984,-0.26228,-0.72564,-0.63612,2410.1,-0.94501,0.32658,0.0171,2085.3 > view matrix models > #7,0.2131,0.69599,-0.68571,2934.3,-0.24628,-0.6409,-0.72705,2404.7,-0.94548,0.32381,0.03483,2081.9 > view matrix models > #7,0.3411,-0.80068,-0.4925,3257.6,0.20162,0.57404,-0.79361,1971.6,0.91815,0.17141,0.35724,1542.8 > view matrix models > #7,0.35038,-0.62142,-0.70077,3256.5,0.085709,0.76633,-0.6367,1913.5,0.93268,0.16302,0.32176,1549.6 > view matrix models > #7,-0.023767,-0.67327,-0.73901,3380.7,0.13015,0.73084,-0.67002,1919,0.99121,-0.1121,0.070255,1668.3 > view matrix models > #7,-0.03283,-0.67454,-0.73751,3382.1,0.10598,0.7314,-0.67366,1882.9,0.99383,-0.10028,0.047474,1674.9 > artiax tomo #3.1.1 contrastCenter -5.62658 > artiax tomo #3.1.1 slice 262 > view matrix models > #7,-0.17095,-0.24744,-0.9537,3355.8,0.017707,0.96702,-0.25407,1742.7,0.98512,-0.06032,-0.16093,1716.3 > view matrix models > #7,0.13464,0.50332,-0.85354,3046.6,0.52382,-0.76734,-0.36986,2102,-0.84112,-0.3973,-0.36697,2349.7 > view matrix models > #7,0.2607,0.34949,-0.89994,3065.2,0.1026,-0.93692,-0.33413,2253,-0.95995,-0.0052266,-0.28012,2255.1 > view matrix models > #7,0.19029,0.35244,-0.91628,3087.3,0.09819,-0.93549,-0.33944,2255.1,-0.97681,-0.025378,-0.21262,2249 > view matrix models > #7,0.20871,0.35269,-0.91217,2934,0.10328,-0.93544,-0.33806,2040.8,-0.97251,-0.023657,-0.23166,2204.3 > view matrix models > #7,0.83752,0.16494,0.52092,2472,0.172,-0.98447,0.035175,1946.2,0.51863,0.060138,-0.85288,1927.7 > view matrix models > #7,-0.28531,0.35463,0.89041,2635.5,-0.35568,-0.90186,0.24522,2016.1,0.89,-0.24673,0.38345,1614.4 > view matrix models > #7,-0.28531,0.35463,0.89041,2507.7,-0.35568,-0.90186,0.24522,1967.3,0.89,-0.24673,0.38345,1583 > view matrix models > #7,-0.26799,0.30127,0.91511,2511.5,-0.02022,-0.9514,0.3073,1875.3,0.96321,0.063849,0.26106,1508.7 > view matrix models > #7,-0.26799,0.30127,0.91511,2492.8,-0.02022,-0.9514,0.3073,1887.4,0.96321,0.063849,0.26106,1505.5 > view matrix models > #7,-0.26799,0.30127,0.91511,2437,-0.02022,-0.9514,0.3073,1869.1,0.96321,0.063849,0.26106,1492 > view matrix models > #7,-0.26799,0.30127,0.91511,2491.9,-0.02022,-0.9514,0.3073,1891.6,0.96321,0.063849,0.26106,1505.6 > view matrix models > #7,-0.26799,0.30127,0.91511,2494.8,-0.02022,-0.9514,0.3073,1890.1,0.96321,0.063849,0.26106,1587.8 > view matrix models > #7,-0.27838,0.2558,0.92578,2507.4,0.095822,-0.95168,0.29177,1862.6,0.95568,0.16993,0.24042,1566.1 > view matrix models > #7,-0.27838,0.2558,0.92578,2505.7,0.095822,-0.95168,0.29177,1862.3,0.95568,0.16993,0.24042,1573 > view matrix models > #7,-0.27838,0.2558,0.92578,2507.1,0.095822,-0.95168,0.29177,1862.2,0.95568,0.16993,0.24042,1583.8 > view matrix models > #7,-0.27838,0.2558,0.92578,2475.6,0.095822,-0.95168,0.29177,1857.9,0.95568,0.16993,0.24042,1583.6 > hide #4 models > view > surface dust #7 size 30 [Repeated 1 time(s)] > artiax tomo #3.1.1 contrastCenter 2.1908 > artiax tomo #3.1.1 contrastWidth 83.3854 > view orient > select clear > hide #!5 models > hide #!7 models > artiax tomo #3.1.1 slice 266 > artiax tomo #3.1.1 slice 255 > artiax view xy > artiax view xz > artiax view yz > artiax view xy > artiax tomo #3.1.1 sliceDirection 0.0,0.0,5.0 > artiax tomo #3.1.1 slice 260 > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > artiax tomo #3.1.1 sliceDirection 0,1,0 > artiax view xz > mousemode rightMode ""move planes"" > artiax tomo #3.1.1 sliceDirection 1,0,0 > artiax view yz > mousemode rightMode ""move planes"" > artiax tomo #3.1.1 sliceDirection 0,1,0 > artiax view xz > mousemode rightMode ""move planes"" > artiax tomo #3.1.1 slice 277 > show #!5 models > show #!6 models > show #!7 models > artiax tomo #3.1.1 slice 240 > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > hide #!6 models > hide #!7 models > hide #!5 models > artiax tomo #3.1.1 contrastWidth 153.74184 > artiax tomo #3.1.1 contrastWidth 156.34763 > artiax tomo #3.1.1 contrastCenter 4.79659 > volume #3.1.1 style surface > volume #3.1.1 level 62.44 > volume #3.1.1 level 60.02 > volume #3.1.1 level 56.39 > volume #3.1.1 level 46.72 > invert Unknown command: invert > vop invert #3 > volume invert #3 Expected a density maps specifier or a keyword > vop invert #3.1 > volume invert #3.1 Expected a density maps specifier or a keyword > vop gauss #3 sd 5 invert true Opened 649.rec gaussian as #8, grid size 1024,1024,512, pixel 7.6, shown at step 1, values float32 > volume #8 level -85.51 > volume #8 step 4 > volume #8 level -18.88 > volume #8 level -6.067 > volume #8 level -2.223 > volume #8 level 0.3395 > surface dust #8 size 76 > volume #8 level -0.9418 > surface dust #8 size 200 > surface dust #8 size 400 > view > volume #8 level 8.027 > volume #8 level 9.309 > volume #8 level 10 > volume #8 level 12 > volume #8 level 8 > volume #8 level 6 > volume #8 level -6.813 > volume #8 level -2.969 > volume #8 level 0.8748 > volume #8 level 6 > volume #8 level 9.844 > volume #8 level 4.719 > volume #8 step 1 > volume #8 level 11.16 > lighting simple [Repeated 1 time(s)] > volume #8 level 1 > lighting simple > view orient > surface dust #8 size 76 > surface dust #8 size 400 > surface dust #8 size 800 > vop copy #8 Opened 649.rec gaussian copy as #9, grid size 1024,1024,512, pixel 7.6, shown at step 1, values float32 > surface dust #9 size 1000 > surface dust #9 size 2000 > surface dust #9 size 1500 > surface dust #9 size 1000 > ui mousemode right ""move planes"" > volume #9 region 0,0,0,1023,1023,511 > hide #!3 models > ui mousemode right clip > ui tool show ""Side View"" > view orient > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > volume #9 region 0,0,0,1023,1023,511 [Repeated 3 time(s)] > hide #!9 models > show #!8 models > hide #!8 models > show #!9 models > volume #9 region 0,0,0,1023,1023,511 [Repeated 1 time(s)] > ~clip > ui mousemode right ""mark surface"" > marker #4 position 2874,1716,2219 color yellow radius 100 > show #4 models > vop zone #9 near #4 newMap true minimalBounds true Opened 649.rec gaussian copy zone as #10, grid size 8,5,39, pixel 7.6, shown at step 1, values float32 > vop zone #9 near #4 range 1000 newMap true minimalBounds true Opened 649.rec gaussian copy zone as #11, grid size 270,267,302, pixel 7.6, shown at step 1, values float32 > close #10 > volume #11 level -4.759 > volume #11 level -0.2519 > surface dust #11 size 1000 > volume #11 level 2.001 > volume #11 level 0.2489 > volume #11 level -0.001499 > volume #11 step 4 > volume #11 level -0.001499 > volume #11 step 1 > surface dust #11 size 100 > surface dust #11 size 200 > volume #11 level 1.501 > volume #11 level 0.4993 > volume #11 level 4.255 > volume #11 level -0.7526 > vop gauss #11 sd 3 Opened 649.rec gaussian copy zone gaussian as #10, grid size 270,267,302, pixel 7.6, shown at step 1, values float32 > volume #10 level 0.75 > volume #10 level -2.235 > vop gauss #10 sd 3 Opened 649.rec gaussian copy zone gaussian as #12, grid size 270,267,302, pixel 7.6, shown at step 1, values float32 > close #12 > surface dust #10 size 200 > surface dust #10 size 500 > open 7apk 7apk title: Structure of the human THO - UAP56 complex [more info...] Chain information for 7apk #12 --- Chain | Description | UniProt A I a i | THO complex subunit 1 | THOC1_HUMAN 2-657 B J b j | THO complex subunit 2 | THOC2_HUMAN 1-1203 C K c k | THO complex subunit 3 | THOC3_HUMAN 1-351 E M e m | THO complex subunit 5 homolog | THOC5_HUMAN 1-683 F N f n | THO complex subunit 6 homolog | THOC6_HUMAN 1-341 G O g o | THO complex subunit 7 homolog | THOC7_HUMAN 1-204 H P h p | Spliceosome RNA helicase DDX39B | DX39B_HUMAN 1-428 X x | THOC2 anchor (putative) | > hide #4 models > hide #!10 models > show #!10 models > view > select add #12 72698 atoms, 73887 bonds, 204 pseudobonds, 9968 residues, 3 models selected > ui mousemode right ""translate selected models"" > view matrix models > #4,1,0,0,2135,0,1,0,2303.8,0,0,1,227.18,#12,1,0,0,2077,0,1,0,2260.2,0,0,1,227.18 > view matrix models > #4,1,0,0,3081.5,0,1,0,1977,0,0,1,1441.8,#12,1,0,0,3023.6,0,1,0,1933.4,0,0,1,1441.8 > view matrix models > #4,0.10199,0.93367,-0.3433,3155.4,0.10045,0.33367,0.93732,1839.7,0.9897,-0.13009,-0.059756,1566.9,#12,0.10199,0.93367,-0.3433,3108.8,0.10045,0.33367,0.93732,1819.3,0.9897,-0.13009,-0.059756,1515.2 > view matrix models > #4,0.10199,0.93367,-0.3433,3039.5,0.10045,0.33367,0.93732,1565.3,0.9897,-0.13009,-0.059756,1938.5,#12,0.10199,0.93367,-0.3433,2992.9,0.10045,0.33367,0.93732,1545,0.9897,-0.13009,-0.059756,1886.9 > view matrix models > #4,-0.018507,0.96012,-0.27897,3041,0.06326,0.27958,0.95804,1581.1,0.99783,8.2866e-05,-0.065911,1906.1,#12,-0.018507,0.96012,-0.27897,3000.2,0.06326,0.27958,0.95804,1565.2,0.99783,8.2866e-05,-0.065911,1848.3 > view matrix models > #4,-0.39843,0.89387,-0.20556,3121.7,0.020904,0.23291,0.97227,1598,0.91696,0.38309,-0.11148,1842.7,#12,-0.39843,0.89387,-0.20556,3105.9,0.020904,0.23291,0.97227,1586.7,0.91696,0.38309,-0.11148,1772.8 > view matrix models > #4,0.18563,0.74244,-0.64368,3158.1,0.14258,0.62778,0.76522,1534,0.97222,-0.23382,0.010681,1947.3,#12,0.18563,0.74244,-0.64368,3115,0.14258,0.62778,0.76522,1498.4,0.97222,-0.23382,0.010681,1901.1 > view matrix models > #4,-0.28575,0.94381,-0.16604,3071.9,-0.21222,0.10664,0.97139,1682.7,0.93451,0.31281,0.16983,1772,#12,-0.28575,0.94381,-0.16604,3047.3,-0.21222,0.10664,0.97139,1690.3,0.93451,0.31281,0.16983,1704.2 > view matrix models > #4,-0.28575,0.94381,-0.16604,3067.4,-0.21222,0.10664,0.97139,1649.1,0.93451,0.31281,0.16983,1792.9,#12,-0.28575,0.94381,-0.16604,3042.8,-0.21222,0.10664,0.97139,1656.7,0.93451,0.31281,0.16983,1725.1 > view matrix models > #4,-0.28575,0.94381,-0.16604,2890.5,-0.21222,0.10664,0.97139,1596.5,0.93451,0.31281,0.16983,1735.3,#12,-0.28575,0.94381,-0.16604,2865.9,-0.21222,0.10664,0.97139,1604.2,0.93451,0.31281,0.16983,1667.5 > view matrix models > #4,0.15172,0.87105,-0.46718,2899.5,0.34064,0.39762,0.85198,1434.3,0.92787,-0.2884,-0.23638,2008.3,#12,0.15172,0.87105,-0.46718,2852.8,0.34064,0.39762,0.85198,1397.2,0.92787,-0.2884,-0.23638,1967.1 > view matrix models > #4,0.21136,0.82021,-0.53159,2918,-0.0099358,0.54565,0.83795,1481.2,0.97736,-0.17182,0.12348,1860.3,#12,0.21136,0.82021,-0.53159,2869.9,-0.0099358,0.54565,0.83795,1457.9,0.97736,-0.17182,0.12348,1811.1 > view matrix models > #4,0.20869,0.82248,-0.52913,2893.5,-0.0093947,0.5427,0.83987,1483,0.97794,-0.1703,0.12099,1863.9,#12,0.20869,0.82248,-0.52913,2845.6,-0.0093947,0.5427,0.83987,1459.8,0.97794,-0.1703,0.12099,1814.6 > view matrix models > #4,0.34188,0.38419,-0.85762,3070.9,0.34072,0.79984,0.49413,1442.9,0.8758,-0.46114,0.14255,1953.1,#12,0.34188,0.38419,-0.85762,3034.3,0.34072,0.79984,0.49413,1388.3,0.8758,-0.46114,0.14255,1922.4 > view matrix models > #4,-0.29904,0.93538,-0.18878,2878.7,-0.10993,0.16274,0.98052,1558.4,0.94789,0.31397,0.054163,1770,#12,-0.29904,0.93538,-0.18878,2855.3,-0.10993,0.16274,0.98052,1557.6,0.94789,0.31397,0.054163,1701.4 > view matrix models > #4,-0.29904,0.93538,-0.18878,2892,-0.10993,0.16274,0.98052,1613.2,0.94789,0.31397,0.054163,1741.1,#12,-0.29904,0.93538,-0.18878,2868.6,-0.10993,0.16274,0.98052,1612.5,0.94789,0.31397,0.054163,1672.4 > view matrix models > #4,-0.29172,0.9243,-0.2461,2910.3,-0.26212,0.17019,0.94991,1655,0.91989,0.34162,0.19263,1699.1,#12,-0.29172,0.9243,-0.2461,2886.9,-0.26212,0.17019,0.94991,1662.8,0.91989,0.34162,0.19263,1630.9 > view matrix models > #4,-0.34598,0.87418,-0.34074,2963.4,-0.16458,0.30099,0.93932,1603.5,0.92369,0.38106,0.039736,1734.2,#12,-0.34598,0.87418,-0.34074,2945.4,-0.16458,0.30099,0.93932,1599.9,0.92369,0.38106,0.039736,1664 > view matrix models > #4,-0.33776,0.87698,-0.34179,2960.5,-0.16468,0.30246,0.93883,1600.6,0.92671,0.37339,0.04226,1736.2,#12,-0.33776,0.87698,-0.34179,2941.8,-0.16468,0.30246,0.93883,1597,0.92671,0.37339,0.04226,1666.2 > view matrix models > #4,-0.33776,0.87698,-0.34179,2957.5,-0.16468,0.30246,0.93883,1596.4,0.92671,0.37339,0.04226,1743.1,#12,-0.33776,0.87698,-0.34179,2938.9,-0.16468,0.30246,0.93883,1592.7,0.92671,0.37339,0.04226,1673.1 > view matrix models > #4,-0.2288,0.84947,-0.47544,2979.7,-0.15212,0.4512,0.87936,1574.3,0.96151,0.27353,0.025985,1765,#12,-0.2288,0.84947,-0.47544,2955.9,-0.15212,0.4512,0.87936,1563.4,0.96151,0.27353,0.025985,1697.3 > view matrix models > #4,-0.21789,0.8569,-0.46717,2973.3,-0.15397,0.4425,0.88345,1573.7,0.96375,0.26443,0.035523,1762.7,#12,-0.21789,0.8569,-0.46717,2948.6,-0.15397,0.4425,0.88345,1563.3,0.96375,0.26443,0.035523,1695.3 > view matrix models > #4,-0.21789,0.8569,-0.46717,2970.4,-0.15397,0.4425,0.88345,1570,0.96375,0.26443,0.035523,1769.5,#12,-0.21789,0.8569,-0.46717,2945.7,-0.15397,0.4425,0.88345,1559.6,0.96375,0.26443,0.035523,1702.2 > view matrix models > #4,-0.2975,0.94515,-0.13486,2867,-0.36045,0.019613,0.93257,1707.5,0.88407,0.32605,0.33485,1682.7,#12,-0.2975,0.94515,-0.13486,2843,-0.36045,0.019613,0.93257,1727.6,0.88407,0.32605,0.33485,1617.2 > view matrix models > #4,-0.31237,0.94765,-0.06629,2849.2,-0.18238,0.0086592,0.98319,1654.7,0.93229,0.3192,0.17013,1722.7,#12,-0.31237,0.94765,-0.06629,2826,-0.18238,0.0086592,0.98319,1664.9,0.93229,0.3192,0.17013,1654.8 > view matrix models > #4,0.43824,0.89704,-0.057184,2688.8,-0.040163,-0.044013,-0.99822,2228.7,-0.89796,0.43976,0.016739,2153.9,#12,0.43824,0.89704,-0.057184,2624.3,-0.040163,-0.044013,-0.99822,2232.9,-0.89796,0.43976,0.016739,2186.8 > view matrix models > #4,0.34986,0.93334,0.080445,2658.6,-0.045424,0.10267,-0.99368,2192,-0.9357,0.34399,0.078317,2167.9,#12,0.34986,0.93334,0.080445,2597.6,-0.045424,0.10267,-0.99368,2190.1,-0.9357,0.34399,0.078317,2207.2 > view matrix models > #4,0.3514,0.92532,0.14245,2641.7,0.11959,0.10655,-0.98709,2151.6,-0.92856,0.3639,-0.07322,2206.7,#12,0.3514,0.92532,0.14245,2581,0.11959,0.10655,-0.98709,2140,-0.92856,0.3639,-0.07322,2244.7 > view matrix models > #4,0.3514,0.92532,0.14245,2638.7,0.11959,0.10655,-0.98709,2162.3,-0.92856,0.3639,-0.07322,2214.7,#12,0.3514,0.92532,0.14245,2578,0.11959,0.10655,-0.98709,2150.7,-0.92856,0.3639,-0.07322,2252.7 > view matrix models > #4,0.25229,0.96712,0.032102,2683.8,0.17149,-0.012035,-0.98511,2179.5,-0.95234,0.25404,-0.16888,2276.1,#12,0.25229,0.96712,0.032102,2627,0.17149,-0.012035,-0.98511,2170.1,-0.95234,0.25404,-0.16888,2320.3 > view matrix models > #4,0.25229,0.96712,0.032102,2689.9,0.17149,-0.012035,-0.98511,2154,-0.95234,0.25404,-0.16888,2259.5,#12,0.25229,0.96712,0.032102,2633.1,0.17149,-0.012035,-0.98511,2144.6,-0.95234,0.25404,-0.16888,2303.6 > view matrix models > #4,0.25229,0.96712,0.032102,2693.9,0.17149,-0.012035,-0.98511,2154.4,-0.95234,0.25404,-0.16888,2249.6,#12,0.25229,0.96712,0.032102,2637.1,0.17149,-0.012035,-0.98511,2144.9,-0.95234,0.25404,-0.16888,2293.8 > view matrix models > #4,0.24201,0.9663,0.087746,2679.8,0.31524,0.0072211,-0.94898,2106.1,-0.91763,0.25733,-0.30287,2281,#12,0.24201,0.9663,0.087746,2623.7,0.31524,0.0072211,-0.94898,2087.5,-0.91763,0.25733,-0.30287,2323 > view matrix models > #4,0.2392,0.96603,0.097864,2677.5,0.34123,0.010726,-0.93992,2096.6,-0.90904,0.25823,-0.32707,2286.1,#12,0.2392,0.96603,0.097864,2621.5,0.34123,0.010726,-0.93992,2076.4,-0.90904,0.25823,-0.32707,2327.5 > view matrix models > #4,0.2392,0.96603,0.097864,2667.1,0.34123,0.010726,-0.93992,2094.8,-0.90904,0.25823,-0.32707,2311.4,#12,0.2392,0.96603,0.097864,2611.1,0.34123,0.010726,-0.93992,2074.6,-0.90904,0.25823,-0.32707,2352.9 > transparency #10 50 > view matrix models > #4,0.2392,0.96603,0.097864,2681.1,0.34123,0.010726,-0.93992,2089.3,-0.90904,0.25823,-0.32707,2303.3,#12,0.2392,0.96603,0.097864,2625.1,0.34123,0.010726,-0.93992,2069.1,-0.90904,0.25823,-0.32707,2344.7 > view matrix models > #4,0.31499,0.94758,0.053676,2681.7,0.31558,-0.051231,-0.94751,2112.8,-0.89509,0.3154,-0.31517,2282.3,#12,0.31499,0.94758,0.053676,2622.2,0.31558,-0.051231,-0.94751,2096.8,-0.89509,0.3154,-0.31517,2320.4 > view matrix models > #4,0.31499,0.94758,0.053676,2681.9,0.31558,-0.051231,-0.94751,2113,-0.89509,0.3154,-0.31517,2281.5,#12,0.31499,0.94758,0.053676,2622.3,0.31558,-0.051231,-0.94751,2097,-0.89509,0.3154,-0.31517,2319.6 > select clear > hide #!12 models > hide #!10 models > show #!8 models > hide #!8 models > show #!3 models > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > show #!12 models > molmap #12 40 Opened 7apk map 40 as #13, grid size 43,32,43, pixel 13.3, shown at level 0.0172, step 1, values float32 > volume #13 color #29923b > close #13 > molmap #12 25 Opened 7apk map 25 as #13, grid size 58,40,57, pixel 8.33, shown at level 0.0264, step 1, values float32 > volume #13 color #57ba77 > volume #13 color #29923b > hide #!12 models > vieworient Unknown command: vieworient > view orient > volume #13 level 0.07709 > show #!12 models > color #12 forestgreen > artiax tomo #3.1.1 slice 264 > combine #12 > show #!11 models > hide #!11 models > show #!11 models > hide #!11 models > hide #!3 models > show #!11 models > ui mousemode right ""map eraser"" > select add #15 1 model selected > volume erase #11 center 2847.3,1746.3,1795.4 radius 527.46 outside true > close #15 > select add #12 72697 atoms, 73887 bonds, 204 pseudobonds, 9967 residues, 2 models selected > hide #!14 models > hide #15 models > show #!14 models > ui mousemode right ""translate selected models"" > view matrix models > #12,-0.027059,0.95786,0.28595,2647.2,-0.08678,0.28273,-0.95527,2116.1,-0.99586,-0.050664,0.075472,2338.6 > hide #!12 models > show #!12 models > hide #!14 models > view matrix models > #12,-0.027059,0.95786,0.28595,2648.2,-0.08678,0.28273,-0.95527,2134.2,-0.99586,-0.050664,0.075472,2324.4 > view matrix models > #12,-0.034619,0.95096,0.30737,2646,0.09774,0.3093,-0.94593,2071.1,-0.99461,-0.0027056,-0.10365,2363.6 > view matrix models > #12,-0.034722,0.95089,0.30758,2645.8,0.099699,0.30953,-0.94565,2070.1,-0.99441,-0.0021691,-0.10555,2365.6 > view matrix models > #12,-0.034722,0.95089,0.30758,2637.5,0.099699,0.30953,-0.94565,2252.9,-0.99441,-0.0021691,-0.10555,2373.3 > view matrix models > #12,0.14496,0.9795,-0.13985,2711.9,0.10461,-0.15572,-0.98225,2398.6,-0.98389,0.12775,-0.12504,2338.1 > view matrix models > #12,0.14053,0.98136,-0.1311,2710,0.18224,-0.15579,-0.97083,2373.1,-0.97316,0.11254,-0.20074,2362.2 > view matrix models > #12,0.14053,0.98136,-0.1311,2720,0.18224,-0.15579,-0.97083,2168.3,-0.97316,0.11254,-0.20074,2347.4 > view matrix models > #12,0.33406,0.94229,-0.022174,2643.7,0.21249,-0.098212,-0.97221,2143.2,-0.91829,0.32007,-0.23304,2280.6 > view matrix models > #12,0.33437,0.94207,-0.026589,2644.6,0.2115,-0.1025,-0.97199,2161.8,-0.91841,0.31938,-0.23352,2278.8 > view matrix models > #12,0.32968,0.9439,-0.019087,2643.1,0.27856,-0.11657,-0.95332,2141.2,-0.90206,0.30898,-0.30137,2297.5 > view matrix models > #12,0.32968,0.9439,-0.019087,2639.2,0.27856,-0.11657,-0.95332,2157.7,-0.90206,0.30898,-0.30137,2324.7 > fitmap #12 inMap #11 Fit molecule 7apk (#12) to map 649.rec gaussian copy zone (#11) using 72697 atoms average map value = 41.66, steps = 316 shifted from previous position = 144 rotated from previous position = 71.1 degrees atoms outside contour = 963, contour level = -0.75262 Position of 7apk (#12) relative to 649.rec gaussian copy zone (#11) coordinates: Matrix rotation and translation -0.33207503 0.94216063 0.04538187 2924.62958585 0.92220319 0.33439588 -0.19421806 1689.21295072 -0.19816012 -0.02264366 -0.97990807 2380.32687905 Axis 0.57463860 0.81567314 -0.06684163 Axis point 985.73900521 0.00000000 1201.46472742 Rotation angle (degrees) 171.41427706 Shift along axis 2899.34576146 > view matrix models > #12,0.073074,0.95332,-0.29297,2907.2,-0.22435,-0.27052,-0.93621,2415.1,-0.97176,0.13414,0.19411,2203.4 > view matrix models > #12,0.14028,0.97176,-0.18976,2851.8,-0.060943,-0.18282,-0.98126,2356.3,-0.98824,0.14921,0.033576,2251.7 > view matrix models > #12,0.14028,0.97176,-0.18976,2788.5,-0.060943,-0.18282,-0.98126,2239.8,-0.98824,0.14921,0.033576,2284.3 > view matrix models > #12,-0.097209,0.96176,-0.25606,2878.9,-0.11822,-0.26662,-0.95652,2273.2,-0.98822,-0.06271,0.13962,2314.6 > view matrix models > #12,-0.21528,0.95084,-0.2226,2905.7,0.37582,-0.12972,-0.91757,2080.7,-0.90134,-0.2812,-0.32942,2494.3 > view matrix models > #12,-0.22376,0.92459,0.30833,2756.9,0.264,0.36202,-0.894,1961.6,-0.93821,-0.11865,-0.3251,2455.9 > view matrix models > #12,-0.22376,0.92459,0.30833,2753.9,0.264,0.36202,-0.894,1972.5,-0.93821,-0.11865,-0.3251,2461.8 > view matrix models > #12,0.22296,0.82855,0.51361,2593.3,0.030379,0.52071,-0.85319,1980.4,-0.97435,0.20583,0.090928,2252.5 > view matrix models > #12,0.15429,0.96684,0.20351,2665.2,0.32972,0.14378,-0.93307,2029.4,-0.93139,0.21107,-0.2966,2354.8 > view matrix models > #12,0.23805,0.95422,0.1811,2651.8,0.32696,0.096846,-0.94006,2046,-0.91457,0.28299,-0.28894,2326.6 > view matrix models > #12,0.21366,0.97435,0.070599,2685.9,0.19725,0.027752,-0.97996,2115.1,-0.95679,0.2233,-0.18626,2325.4 > view matrix models > #12,0.21366,0.97435,0.070599,2676.1,0.19725,0.027752,-0.97996,2107.7,-0.95679,0.2233,-0.18626,2332.4 > view matrix models > #12,0.21366,0.97435,0.070599,2650.1,0.19725,0.027752,-0.97996,2139.6,-0.95679,0.2233,-0.18626,2325.9 > view matrix models > #12,0.2102,0.97468,0.076272,2649.3,0.2296,0.026619,-0.97292,2128.7,-0.95032,0.22202,-0.21819,2334 > view matrix models > #12,0.2102,0.97468,0.076272,2640.8,0.2296,0.026619,-0.97292,2126.5,-0.95032,0.22202,-0.21819,2326 > view matrix models > #12,0.12641,0.98345,0.12981,2646.1,0.26682,0.092333,-0.95931,2092.5,-0.95542,0.1559,-0.25073,2356.6 > transparency #11 50 > view matrix models > #12,0.12641,0.98345,0.12981,2645.3,0.26682,0.092333,-0.95931,2091.6,-0.95542,0.1559,-0.25073,2357 > view matrix models > #12,0.18458,0.9816,-0.048975,2682.8,0.26666,-0.097981,-0.9588,2147.2,-0.94595,0.16392,-0.27984,2360.7 > view matrix models > #12,0.18458,0.9816,-0.048975,2671.5,0.26666,-0.097981,-0.9588,2131.8,-0.94595,0.16392,-0.27984,2362.8 > view matrix models > #12,0.16954,0.9816,-0.087823,2687.4,0.019618,-0.092456,-0.99552,2211.5,-0.98533,0.16705,-0.034932,2299.7 > view matrix models > #12,0.16954,0.9816,-0.087823,2690.5,0.019618,-0.092456,-0.99552,2206.9,-0.98533,0.16705,-0.034932,2275.8 > hide #!12 models > show #!12 models > view matrix models > #12,0.18118,0.98157,-0.060779,2679.1,0.19505,-0.096439,-0.97604,2152.3,-0.96391,0.16498,-0.20893,2322.4 > view matrix models > #12,0.18118,0.98157,-0.060779,2676.6,0.19505,-0.096439,-0.97604,2160.9,-0.96391,0.16498,-0.20893,2344.1 > view matrix models > #12,0.18818,0.98056,-0.055667,2673.4,0.14959,-0.084635,-0.98512,2173.1,-0.97067,0.17705,-0.16261,2328.6 > view matrix models > #12,0.065764,0.9956,-0.066761,2707.2,0.12963,-0.074863,-0.98873,2177,-0.98938,0.056369,-0.13398,2360.7 > view matrix models > #12,0.065764,0.9956,-0.066761,2709.5,0.12963,-0.074863,-0.98873,2166.2,-0.98938,0.056369,-0.13398,2367.1 > show #!13 models > hide #!12 models > show #!12 models > hide #!12 models > show #!12 models > close #13 > hide #!12 models > show #!12 models > show #!14 models > select subtract #12 Nothing selected > hide #!14 models > select add #14 72697 atoms, 73887 bonds, 204 pseudobonds, 9967 residues, 2 models selected > select subtract #14 Nothing selected > show #!14 models > select add #14 72697 atoms, 73887 bonds, 204 pseudobonds, 9967 residues, 2 models selected > view matrix models > #14,0.31499,0.94758,0.053676,2456.7,0.31558,-0.051231,-0.94751,1631,-0.89509,0.3154,-0.31517,2400.9 > view matrix models > #14,0.74152,0.40537,0.53463,2350,0.2364,-0.9036,0.35724,1512.6,0.6279,-0.13851,-0.76587,2234.9 > view matrix models > #14,0.5841,0.44392,0.67953,2340.2,0.66156,-0.74543,-0.081689,1476.6,0.47028,0.49726,-0.72909,2082.6 > view orient > view matrix models > #14,0.5841,0.44392,0.67953,2407.3,0.66156,-0.74543,-0.081689,1547.9,0.47028,0.49726,-0.72909,2072.3 > show #!3 models > view orient > hide #!11 models > view matrix models > #14,0.38605,-0.92247,-0.0044948,3068.6,-0.898,-0.37469,-0.23067,1928.3,0.2111,0.093085,-0.97302,2337.5 > view matrix models > #14,0.19026,-0.97676,0.098733,3109.4,-0.96574,-0.20429,-0.16006,1876.5,0.17651,-0.064897,-0.98216,2396.3 > view matrix models > #14,0.19026,-0.97676,0.098733,2911.5,-0.96574,-0.20429,-0.16006,2098.4,0.17651,-0.064897,-0.98216,2396.3 > view matrix models > #14,0.17511,-0.97717,0.12032,2909.5,-0.94773,-0.2004,-0.24829,2118.5,0.26674,-0.070551,-0.96118,2366 > view matrix models > #14,0.17511,-0.97717,0.12032,2910.8,-0.94773,-0.2004,-0.24829,2028.8,0.26674,-0.070551,-0.96118,2268 > view matrix models > #14,0.17511,-0.97717,0.12032,2896.1,-0.94773,-0.2004,-0.24829,2101.3,0.26674,-0.070551,-0.96118,2270.5 > view matrix models > #14,0.12958,-0.98121,0.14298,2903.4,-0.98853,-0.13911,-0.058718,2038.2,0.077505,-0.13374,-0.98798,2350.9 > view matrix models > #14,0.32112,-0.93586,0.14508,2835,-0.94645,-0.32251,0.014475,2058,0.033244,-0.14196,-0.98931,2366.4 > view matrix models > #14,0.32144,-0.93966,0.11713,2844.4,-0.94663,-0.32197,0.014946,2057.8,0.023669,-0.11569,-0.993,2362.5 > view matrix models > #14,0.32665,-0.94513,-0.005506,2881.2,-0.94512,-0.32658,-0.0099665,2066.1,0.0076214,0.0084593,-0.99994,2332.8 > view matrix models > #14,0.53483,-0.84321,0.054381,2774.1,-0.8297,-0.53626,-0.15502,2138.1,0.15987,0.037788,-0.98641,2276.8 > view matrix models > #14,0.53483,-0.84321,0.054381,2759.3,-0.8297,-0.53626,-0.15502,2137.2,0.15987,0.037788,-0.98641,2238.6 > view matrix models > #14,0.53483,-0.84321,0.054381,2755.2,-0.8297,-0.53626,-0.15502,2136.1,0.15987,0.037788,-0.98641,2229.3 > view matrix models > #14,0.53567,-0.84388,0.030446,2762.3,-0.83949,-0.53609,-0.088741,2119,0.091208,0.021977,-0.99559,2256.2 > view matrix models > #14,0.3657,-0.93069,0.0086401,2842.7,-0.92573,-0.36467,-0.1002,2096.8,0.096408,0.028645,-0.99493,2252.6 > view matrix models > #14,0.3657,-0.93069,0.0086401,2841.7,-0.92573,-0.36467,-0.1002,2100.7,0.096408,0.028645,-0.99493,2252.7 > view matrix models > #14,0.3657,-0.93069,0.0086401,2837.5,-0.92573,-0.36467,-0.1002,2110.8,0.096408,0.028645,-0.99493,2253 > select clear > surface #12,14 > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > artiax tomo #3.1.1 slice 294 > artiax tomo #3.1.1 slice 285 > artiax tomo #3.1.1 slice 236 > show #!11 models > hide #!3 models > vop gauss #11 Opened 649.rec gaussian copy zone gaussian as #13, grid size 270,267,302, pixel 7.6, shown at step 1, values float32 > volume #13 level -9.448 > volume #13 level -6.756 > surface dust #13 size 76 > surface dust #13 size 200 > surface dust #13 size 1000 > surface dust #13 size 100 > surface dust #13 size 120 > vop copy #14 > combine #14 > select add #16 72697 atoms, 73887 bonds, 204 pseudobonds, 9967 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models > #16,0.3657,-0.93069,0.0086401,3182.8,-0.92573,-0.36467,-0.1002,1756.8,0.096408,0.028645,-0.99493,2243.5 > view matrix models > #16,0.022882,-0.23183,-0.97249,3369.5,-0.72004,-0.67864,0.14484,1716.8,-0.69355,0.69692,-0.18246,2029.7 > view matrix models > #16,-0.011178,-0.21458,-0.97664,3375.4,-0.92349,-0.37234,0.092377,1700.7,-0.38347,0.90295,-0.194,1884.4 > view matrix models > #16,-0.33688,0.11824,-0.9341,3358,-0.5235,-0.84813,0.081439,1729.4,-0.7826,0.51643,0.34761,1949.2 > view matrix models > #16,-0.09884,0.42036,-0.90196,3192.1,-0.61527,-0.7382,-0.27661,1830.5,-0.7821,0.5276,0.3316,1950.6 > view matrix models > #16,0.028952,0.54984,-0.83477,3097.7,-0.62512,-0.6417,-0.44435,1855.3,-0.77999,0.53469,0.32514,1949.8 > view matrix models > #16,0.094913,0.52004,-0.84885,3091.8,-0.31017,-0.79481,-0.52161,1833.5,-0.94593,0.31279,0.085862,2133.7 > view matrix models > #16,0.096692,0.51856,-0.84956,3045.4,-0.34995,-0.78135,-0.51675,2018.8,-0.93176,0.34727,0.10592,2121 > view matrix models > #16,0.19847,0.51476,-0.83405,3012.9,-0.28297,-0.78464,-0.5516,2011.1,-0.93837,0.34549,-0.01007,2158.1 > view matrix models > #16,0.24537,0.51308,-0.82252,2996.5,-0.25021,-0.78619,-0.56506,2006.3,-0.93658,0.34445,-0.064533,2174.2 > view matrix models > #16,0.24537,0.51308,-0.82252,2974.7,-0.25021,-0.78619,-0.56506,2017.9,-0.93658,0.34445,-0.064533,2241.9 > view matrix models > #16,0.24537,0.51308,-0.82252,2963,-0.25021,-0.78619,-0.56506,2008.6,-0.93658,0.34445,-0.064533,2238.5 > view matrix models > #16,0.24537,0.51308,-0.82252,2953.9,-0.25021,-0.78619,-0.56506,2000.4,-0.93658,0.34445,-0.064533,2233.6 > view matrix models > #16,0.25685,0.4569,-0.85163,2975.8,-0.21166,-0.8332,-0.51086,1987,-0.94299,0.31147,-0.1173,2260.9 > view matrix models > #16,0.23928,0.45867,-0.85578,2981.5,-0.18743,-0.84299,-0.50422,1981,-0.95269,0.28105,-0.11574,2272.1 > view matrix models > #16,0.16371,0.53615,-0.8281,2972.1,-0.16347,-0.81308,-0.55874,1981.7,-0.97287,0.22683,-0.045466,2272.7 > view matrix models > #16,0.23508,0.58617,-0.77534,2921.3,-0.095817,-0.77983,-0.61862,1970.6,-0.96724,0.21971,-0.12715,2297.6 > view matrix models > #16,0.23508,0.58617,-0.77534,2940.1,-0.095817,-0.77983,-0.61862,1990.1,-0.96724,0.21971,-0.12715,2300.4 > view matrix models > #16,0.19008,0.66543,-0.72185,2913.7,-0.14074,-0.70919,-0.69083,2003.9,-0.97163,0.23291,-0.041153,2272.1 > view matrix models > #16,0.2243,0.68545,-0.69271,2889.3,-0.10781,-0.689,-0.71669,1996.3,-0.96854,0.23543,-0.08064,2282.3 > view matrix models > #16,0.29555,0.55834,-0.77518,2931,-0.029868,-0.80563,-0.59166,1970.8,-0.95486,0.19802,-0.22143,2331.5 > view matrix models > #16,0.24308,0.5585,-0.79309,2951.2,0.25135,-0.82595,-0.50461,1870.6,-0.93687,-0.076685,-0.34116,2442.6 > view matrix models > #16,0.24308,0.5585,-0.79309,3152,0.25135,-0.82595,-0.50461,1610.1,-0.93687,-0.076685,-0.34116,2263.2 > view matrix models > #16,0.19877,0.60775,-0.76885,3143,0.42516,-0.76031,-0.49108,1537.3,-0.88302,-0.22927,-0.40952,2313 > view matrix models > #16,0.19877,0.60775,-0.76885,2950.2,0.42516,-0.76031,-0.49108,1783.9,-0.88302,-0.22927,-0.40952,2462.5 > view matrix models > #16,0.32091,0.58301,-0.74641,2915.9,0.22808,-0.81247,-0.53654,1868.9,-0.91924,0.0019386,-0.3937,2400.4 > view matrix models > #16,0.52554,0.34018,-0.7798,2938.7,0.037779,-0.92501,-0.37807,1908.6,-0.84993,0.16923,-0.49898,2363.2 > view matrix models > #16,0.29615,0.55543,-0.77704,2940.2,0.25221,-0.83014,-0.49726,1855.4,-0.92124,-0.048715,-0.38593,2413.5 > view matrix models > #16,0.40763,0.66336,-0.62752,2832.1,0.3103,-0.74694,-0.58804,1841.7,-0.85881,0.044983,-0.51032,2405.5 > view matrix models > #16,0.33667,0.69456,-0.63579,2845.6,0.48599,-0.7065,-0.51446,1757.8,-0.80651,-0.13579,-0.57541,2463 > view matrix models > #16,0.33667,0.69456,-0.63579,2843.3,0.48599,-0.7065,-0.51446,1781.3,-0.80651,-0.13579,-0.57541,2492.3 > view matrix models > #16,0.39626,0.60935,-0.68679,2866.5,0.88677,-0.44786,0.11428,1403.2,-0.23795,-0.6543,-0.71782,2524.8 > view matrix models > #16,0.18009,0.971,0.15726,2569.6,0.71111,-0.23898,0.66122,1228.4,0.67962,-0.0072448,-0.73353,2078.6 > view matrix models > #16,0.024665,0.93968,0.34116,2568,0.68973,-0.26302,0.6746,1237.5,0.72364,0.21867,-0.65462,1976.3 > view matrix models > #16,0.16776,0.96463,0.20334,2561.1,0.63899,-0.26346,0.72269,1237.7,0.7507,0.0086924,-0.66059,2031.9 > view matrix models > #16,0.49579,0.79969,-0.33866,2678.2,0.79685,-0.26387,0.5435,1246.5,0.34527,-0.53933,-0.76806,2340 > view matrix models > #16,0.45039,0.8614,-0.23481,2642,0.83443,-0.31255,0.45392,1276.9,0.31762,-0.40037,-0.85955,2334.6 > view matrix models > #16,0.37387,0.92745,0.0075067,2571.9,0.89976,-0.36465,0.23972,1337.6,0.22507,-0.082872,-0.97081,2301.3 > view matrix models > #16,0.33848,0.92607,0.16679,2534.7,0.9241,-0.36057,0.12661,1363.4,0.17738,0.11128,-0.97783,2260.1 > view matrix models > #16,0.33229,0.91696,0.22085,2523,0.9196,-0.367,0.14017,1362.5,0.20959,0.15652,-0.96518,2233.9 > view matrix models > #16,0.38624,0.76643,0.51323,2464.2,0.86759,-0.4908,0.080006,1431.5,0.31321,0.41437,-0.85451,2095.7 > view matrix models > #16,0.38624,0.76643,0.51323,2428,0.86759,-0.4908,0.080006,1418.8,0.31321,0.41437,-0.85451,2133.4 > view matrix models > #16,0.41887,0.79302,0.44234,2432.2,0.85208,-0.51164,0.11039,1420.2,0.31386,0.33067,-0.89003,2168.4 > view matrix models > #16,0.43446,0.81881,0.37521,2440.3,0.84963,-0.51085,0.13101,1414.5,0.29895,0.26187,-0.91763,2201 > view matrix models > #16,0.44651,0.83463,0.32253,2448,0.84961,-0.50855,0.1398,1411.2,0.2807,0.2116,-0.93618,2226.5 > view matrix models > #16,0.48362,0.84828,0.21573,2465.4,0.83035,-0.5226,0.19344,1404.8,0.27683,0.085577,-0.9571,2270.8 > view matrix models > #16,0.45613,0.82553,0.33234,2445,0.8311,-0.52867,0.17255,1412.6,0.31814,0.19751,-0.92724,2217.3 > view matrix models > #16,0.50085,0.86537,0.017079,2514.9,0.84745,-0.4943,0.19365,1391.6,0.17602,-0.082516,-0.98092,2355.8 > view matrix models > #16,0.35137,0.93623,0.0033405,2540.9,0.90317,-0.3399,0.2622,1310,0.24662,-0.089112,-0.96501,2332.9 > view matrix models > #16,0.36116,0.93145,-0.04432,2553.8,0.90108,-0.33636,0.2737,1306.1,0.24003,-0.13879,-0.96079,2348 > view matrix models > #16,0.29018,0.95686,0.014603,2548.9,0.58347,-0.189,0.78984,1198.9,0.75852,-0.22068,-0.61314,2120.2 > view matrix models > #16,0.24434,0.96935,0.025614,2555,0.41814,-0.12916,0.89916,1195.8,0.87491,-0.20899,-0.43688,2030.9 > view matrix models > #16,0.18382,0.98236,0.034282,2565.8,0.25741,-0.081768,0.96284,1208.6,0.94866,-0.16816,-0.2679,1947.4 > view matrix models > #16,-0.047717,0.99863,0.021543,2630.9,-0.024388,-0.022726,0.99944,1260.6,0.99856,0.047165,0.025439,1782.3 > view matrix models > #16,0.070636,0.99666,0.040952,2591.9,-0.14437,-0.030408,0.98906,1300.2,0.987,-0.075775,0.14174,1786.8 > view matrix models > #16,-0.019552,0.99905,0.038861,2617.5,0.093115,-0.03688,0.99497,1232.7,0.99546,0.023072,-0.092306,1825.5 > view matrix models > #16,-0.022579,0.98735,0.15696,2586.5,0.090492,-0.15433,0.98387,1271.1,0.99564,0.036418,-0.085862,1819.6 > view matrix models > #16,0.091711,0.98322,0.15771,2554.9,0.22156,-0.17455,0.9594,1247,0.97083,-0.053046,-0.23385,1897.1 > view matrix models > #16,-0.076436,0.97575,0.20511,2590.8,0.34797,-0.16667,0.92257,1219.7,0.93438,0.14189,-0.32679,1878.3 > view matrix models > #16,-0.48207,0.84602,0.22771,2737.6,0.13041,-0.18772,0.97353,1272.6,0.86637,0.49901,-0.01983,1701.2 > view matrix models > #16,-0.48207,0.84602,0.22771,2745.6,0.13041,-0.18772,0.97353,1266.2,0.86637,0.49901,-0.01983,1702.3 > view matrix models > #16,-0.34383,0.89401,0.28726,2674.3,0.092557,-0.27216,0.95779,1306.5,0.93446,0.3559,0.010829,1715.6 > view matrix models > #16,-0.1712,0.85845,0.48349,2576.8,-0.028786,-0.49488,0.86848,1433,0.98482,0.13477,0.10944,1736.5 > view matrix models > #16,-0.1712,0.85845,0.48349,2567.3,-0.028786,-0.49488,0.86848,1437.4,0.98482,0.13477,0.10944,1749.1 > view matrix models > #16,-0.1712,0.85845,0.48349,2548.3,-0.028786,-0.49488,0.86848,1414.3,0.98482,0.13477,0.10944,1769.7 > view matrix models > #16,-0.1712,0.85845,0.48349,2553.8,-0.028786,-0.49488,0.86848,1410.7,0.98482,0.13477,0.10944,1771.9 > view matrix models > #16,-0.1712,0.85845,0.48349,2559.1,-0.028786,-0.49488,0.86848,1410.1,0.98482,0.13477,0.10944,1774.6 > view matrix models > #16,-0.1712,0.85845,0.48349,2565.9,-0.028786,-0.49488,0.86848,1417.7,0.98482,0.13477,0.10944,1772.2 > view matrix models > #16,-0.12478,0.89265,0.43313,2557.7,-0.041258,-0.44083,0.89664,1397,0.99133,0.09401,0.091835,1787.6 > view matrix models > #16,-0.11907,0.90041,0.41844,2558.2,-0.039121,-0.42537,0.90417,1389.6,0.99212,0.091287,0.085872,1789.9 > view matrix models > #16,-0.11907,0.90041,0.41844,2571.7,-0.039121,-0.42537,0.90417,1406.9,0.99212,0.091287,0.085872,1788.4 > view matrix models > #16,-0.11907,0.90041,0.41844,2579.3,-0.039121,-0.42537,0.90417,1398.7,0.99212,0.091287,0.085872,1787.3 > show #!3 models > hide #!13 models > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > hide #!16 models > artiax tomo #3.1.1 slice 243 > artiax tomo #3.1.1 slice 251 > show #!16 models > volume #3.1.1 tiltedSlabOffset 1904 tiltedSlabPlaneCount 1 [Repeated 3 time(s)] > ui mousemode right ""translate selected models"" > view matrix models > #16,0.55814,0.7743,0.29821,2459.3,0.67744,-0.63277,0.37507,1413.7,0.47912,-0.0073191,-0.87772,2250.8 > view matrix models > #16,0.69211,0.72175,-0.0078418,2528.1,0.64748,-0.61603,0.44864,1395.3,0.31897,-0.31559,-0.89368,2391.4 > view matrix models > #16,0.71254,0.69916,-0.058848,2544.2,0.59807,-0.56137,0.57199,1356.4,0.36688,-0.44276,-0.81814,2392.4 > view matrix models > #16,0.78474,0.59189,-0.18401,2592.5,0.51715,-0.46158,0.72076,1305.7,0.34167,-0.66077,-0.66832,2418.6 > view matrix models > #16,0.83773,0.4686,-0.28039,2642.3,0.46193,-0.33425,0.82152,1254,0.29124,-0.81774,-0.49647,2427.5 > view matrix models > #16,0.76656,0.60903,0.20363,2476.6,0.62703,-0.77831,-0.032574,1592.7,0.13865,0.15265,-0.97851,2331.1 > view matrix models > #16,0.77162,0.6123,0.1723,2483.6,0.615,-0.78732,0.043732,1575.9,0.16243,0.07222,-0.98407,2349.5 > view matrix models > #16,0.84513,0.50457,0.17653,2492.9,0.50928,-0.86034,0.020924,1634.2,0.16243,0.07222,-0.98407,2349.5 > view matrix models > #16,0.84513,0.50457,0.17653,2467.4,0.50928,-0.86034,0.020924,1629.7,0.16243,0.07222,-0.98407,2349.5 > view matrix models > #16,0.85568,0.50577,0.10958,2484.1,0.4932,-0.86113,0.12332,1603.9,0.15673,-0.051478,-0.9863,2388.1 > view matrix models > #16,0.85566,0.50536,0.11165,2483.6,0.47487,-0.8524,0.21889,1577.9,0.20579,-0.13427,-0.96934,2393.2 > view matrix models > #16,0.85566,0.50536,0.11165,2493.4,0.47487,-0.8524,0.21889,1526.2,0.20579,-0.13427,-0.96934,2340 > view matrix models > #16,0.85566,0.50536,0.11165,2499.1,0.47487,-0.8524,0.21889,1517.5,0.20579,-0.13427,-0.96934,2329.4 > view matrix models > #16,0.85566,0.50536,0.11165,2510.4,0.47487,-0.8524,0.21889,1545.4,0.20579,-0.13427,-0.96934,2331.2 > artiax tomo #3.1.1 slice 243 > artiax tomo #3.1.1 slice 232 > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > select clear > select add #16 72697 atoms, 73887 bonds, 204 pseudobonds, 9967 residues, 2 models selected > volume #3.1.1 tiltedSlabOffset 1949 tiltedSlabPlaneCount 1 [Repeated 1 time(s)] > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > volume #3.1.1 tiltedSlabOffset 1949 tiltedSlabPlaneCount 1 > select clear > save /Users/matthias.vorlaender/Desktop/AweSomeTomo.cxs includeMaps true Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 262, in discovery self.processed[key] = self.process(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 299, in process return copy_state(data, convert=convert) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 219, in copy_state return _copy(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 217, in _copy return convert(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 298, in convert return add_obj(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 270, in _add_obj uid = _UniqueName.from_obj(self.session, obj) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 142, in from_obj if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/info.py"", line 476, in get_class return f(class_name) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site-packages/chimerax/artiax/__init__.py"", line 37, in get_class raise ValueError(""Unknown class name '%s'"" % class_name) ValueError: Unknown class name 'ArtiaX' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 899, in save session.save(output, version=version, include_maps=include_maps) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 625, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) ValueError: error processing: 'models' -> : Unknown class name 'ArtiaX' ValueError: error processing: 'models' -> : Unknown class name 'ArtiaX' File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 262, in discovery self.processed[key] = self.process(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 299, in process return copy_state(data, convert=convert) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 219, in copy_state return _copy(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 217, in _copy return convert(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 298, in convert return add_obj(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 270, in _add_obj uid = _UniqueName.from_obj(self.session, obj) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 142, in from_obj if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/info.py"", line 476, in get_class return f(class_name) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site-packages/chimerax/artiax/__init__.py"", line 37, in get_class raise ValueError(""Unknown class name '%s'"" % class_name) ValueError: Unknown class name 'ArtiaX' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/dialog.py"", line 116, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/dialog.py"", line 127, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/dialog.py"", line 51, in display run(session, cmd) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/cmd.py"", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/cmd.py"", line 90, in provider_save saver_info.save(session, path, **provider_kw) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core_formats/__init__.py"", line 84, in save return cxs_save(session, path, **kw) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 899, in save session.save(output, version=version, include_maps=include_maps) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 625, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) ValueError: error processing: 'models' -> : Unknown class name 'ArtiaX' ValueError: error processing: 'models' -> : Unknown class name 'ArtiaX' File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > hide #!12 models > hide #!14 models > hide #!16 models > show #!11 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > volume #11 step 4 > volume #11 level -0.3043 > volume #11 step 1 > volume #11 step 16 > volume #11 step 8 > volume #11 step 4 > volume #11 step 2 > volume #11 step 1 > lighting soft > transparency 0 > color #11 forestgreen > movie record > turn y 2 180 > wait 180 > movie encode /Users/matthias.vorlaender/Desktop/movie1.mp4 Movie saved to /Users/matthias.vorlaender/Desktop/movie1.mp4 > artiax tomo #3.1.1 slice 264 > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > artiax tomo #3.1.1 sliceDirection 0,0,1 > artiax view xy > mousemode rightMode ""move planes"" > hide #!11 models > artiax tomo #3.1.1 slice 205 > open help:user/artiax_index.html Opened help:user/artiax_index.html > artiax tomo #3.1.1 slice 304 [Repeated 1 time(s)] > view name end > artiax tomo #3.1.1 slice 205 > view name start > view start > view end 25 > artiax tomo #3.1.1 slice 205 > view name start > artiax tomo #3.1.1 slice 304 > view name end > view start > view end 25 > view start > artiax tomo #3.1.1 slice 205 > artiax tomo #3.1.1 slice 305 > view name end > view list Named views: end, start > view end > view start [Repeated 1 time(s)] > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 frames 100 Error executing per-frame command 'artiax tomo #3.1.1 slice 206.01': Invalid ""slice"" argument: Expected an integer > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 > artiax tomo #3.1.1 slice 256 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,256 > show #!11 models > show #!12 models > hide #!11 models > lighting simple > windowsize window size 1163 1249 > hide #!11,12,14,15 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 frames 100 > wait 100 Error executing per-frame command 'artiax tomo #3.1.1 slice 206.01': Invalid ""slice"" argument: Expected an integer > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 frames 100 > wait 100 Error executing per-frame command 'artiax tomo #3.1.1 slice 303.99': Invalid ""slice"" argument: Expected an integer > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,256 > wait 100 > show #!11 models > wait 20 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 256,305 > wait 50 > hide #!11 models > show #!12,14,15 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 frames 100 > wait 100 Error executing per-frame command 'artiax tomo #3.1.1 slice 303.99': Invalid ""slice"" argument: Expected an integer > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 frames 100 Error executing per-frame command 'artiax tomo #3.1.1 slice 206.01': Invalid ""slice"" argument: Expected an integer > close #15 > hide #!11,12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 frames 100 Error executing per-frame command 'artiax tomo #3.1.1 slice 206.01': Invalid ""slice"" argument: Expected an integer > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,256 > show #!11 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 256,305 > hide #!11 models > show #!12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > hide #!11,12,14,16 models > show #!11 models > hide #!11 models > hide #!11,12,14,16 models [Repeated 1 time(s)] > movie record supersample 4 size 1163,1249 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 > wait 100 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,256 > wait 100 > show #!11 models > wait 20 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 256,305 > wait 50 > hide #!11 models > show #!12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > movie encode /Users/matthias.vorlaender/Library/CloudStorage/OneDrive- > VBC/Basel/Movies/Chlamy_649.mrc quality highest Unrecognized movie file suffix Chlamy_649.mrc, use *.mp4, *.wmv, *.mov, *.avi, *.png, *.webm, *.ogv > movie encode /Users/matthias.vorlaender/Library/CloudStorage/OneDrive- > VBC/Basel/Movies/Chlamy_649.mp4 quality highest Movie saved to /Users/matthias.vorlaender/.../Movies/Chlamy_649.mp4 > y highest Unknown command: y highest > hide #!11,12,14,16 models > movie record supersample 4 size 1163,1249 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 > wait 100 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > wait 100 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,256 > wait 100 > show #!11 models > wait 20 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 256,305 > wait 50 > hide #!11 models > show #!12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > movie encode /Users/matthias.vorlaender/Library/CloudStorage/OneDrive- > VBC/Basel/Movies/Chlamy_649.mp4 quality highest Movie saved to /Users/matthias.vorlaender/.../Movies/Chlamy_649.mp4 > hide #!11,12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 > wait 100 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > wait 100 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,256 > wait 100 > show #!11 models > wait 20 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 256,305 > wait 50 > hide #!11 models > show #!12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > wait 100 > hide #!11,12,14,16 models > movie record supersample 4 size 1163,1249 > hide #!11,12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,305 > wait 100 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > wait 100 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 205,256 > wait 100 > show #!11 models > wait 20 > perframe ""artiax tomo #3.1.1 slice $1"" ranges 256,305 > wait 50 > hide #!11 models > show #!12,14,16 models > perframe ""artiax tomo #3.1.1 slice $1"" ranges 305,205 > wait 100 > movie encode /Users/matthias.vorlaender/Library/CloudStorage/OneDrive- > VBC/Basel/Movies/Chlamy_649.mp4 quality highest Movie saved to /Users/matthias.vorlaender/.../Movies/Chlamy_649.mp4 > save /Users/matthias.vorlaender/Desktop/test.cxs Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 262, in discovery self.processed[key] = self.process(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 299, in process return copy_state(data, convert=convert) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 219, in copy_state return _copy(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 217, in _copy return convert(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 298, in convert return add_obj(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 270, in _add_obj uid = _UniqueName.from_obj(self.session, obj) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 142, in from_obj if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/info.py"", line 476, in get_class return f(class_name) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site-packages/chimerax/artiax/__init__.py"", line 37, in get_class raise ValueError(""Unknown class name '%s'"" % class_name) ValueError: Unknown class name 'ArtiaX' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 899, in save session.save(output, version=version, include_maps=include_maps) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 625, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) ValueError: error processing: 'named views' -> -> : Unknown class name 'ArtiaX' ValueError: error processing: 'named views' -> -> : Unknown class name 'ArtiaX' File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 262, in discovery self.processed[key] = self.process(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 299, in process return copy_state(data, convert=convert) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 219, in copy_state return _copy(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 204, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/state.py"", line 217, in _copy return convert(data) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 298, in convert return add_obj(obj, parents) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 270, in _add_obj uid = _UniqueName.from_obj(self.session, obj) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 142, in from_obj if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/info.py"", line 476, in get_class return f(class_name) File ""/Users/matthias.vorlaender/Library/Application Support/ChimeraX/1.6/site-packages/chimerax/artiax/__init__.py"", line 37, in get_class raise ValueError(""Unknown class name '%s'"" % class_name) ValueError: Unknown class name 'ArtiaX' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/dialog.py"", line 116, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/dialog.py"", line 127, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/dialog.py"", line 51, in display run(session, cmd) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/cmd.py"", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/save_command/cmd.py"", line 90, in provider_save saver_info.save(session, path, **provider_kw) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core_formats/__init__.py"", line 84, in save return cxs_save(session, path, **kw) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 899, in save session.save(output, version=version, include_maps=include_maps) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 625, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) ValueError: error processing: 'named views' -> -> : Unknown class name 'ArtiaX' ValueError: error processing: 'named views' -> -> : Unknown class name 'ArtiaX' File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/session.py"", line 266, in discovery raise ValueError(""error processing: %s: %s"" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > close #3 > artiaX close Unknown command: artiaX close > artiaX close Unknown command: artiaX close > save /Users/matthias.vorlaender/Desktop/test.cxs OpenGL version: 4.1 INTEL-20.6.4 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine OpenGL vendor: Intel Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,2 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 512 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 1968.140.7.0.0 (iBridge: 20.16.6072.0.0,0) OS Loader Version: 577.140.2~15 Software: System Software Overview: System Version: macOS 13.5.2 (22G91) Kernel Version: Darwin 22.6.0 Time since boot: 3 days, 2 hours, 11 minutes Graphics/Displays: Intel Iris Plus Graphics: Chipset Model: Intel Iris Plus Graphics Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x8a53 Revision ID: 0x0007 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal LEN T24h-20: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: V3079LXV Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Connection Type: DVI or HDMI Adapter Firmware Version: 5.06 Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-ArtiaX: 0.3 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.20.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.dev0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 geomdl: 5.3.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 pandas: 2.1.0 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 starfile: 0.4.12 superqt: 0.5.4 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect assigned normal Sessions Eric Pettersen all ChimeraX