﻿id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
9774	Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.dev202302280423 (2023-02-28 04:23:03 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x000000011bd82600 (most recent call first):
  File ""/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 284 in event_loop
  File ""/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init
  File ""/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in 
  File ""/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code
  File ""/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main


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  ""uptime"" : 53000,
  ""procLaunch"" : ""2023-09-13 12:24:35.9879 +0300"",
  ""procRole"" : ""Background"",
  ""version"" : 2,
  ""userID"" : 501,
  ""deployVersion"" : 210,
  ""modelCode"" : ""MacBookPro15,1"",
  ""procStartAbsTime"" : 41979971747280,
  ""coalitionID"" : 794,
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  ""captureTime"" : ""2023-09-13 15:42:04.5555 +0300"",
  ""incident"" : ""6A0A9157-0E95-432A-865D-1128B5C9A6F2"",
  ""bug_type"" : ""309"",
  ""pid"" : 15619,
  ""procExitAbsTime"" : 53828239583394,
  ""cpuType"" : ""X86-64"",
  ""procName"" : ""ChimeraX"",
  ""procPath"" : ""\/private\/var\/folders\/*\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"",
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  ""parentProc"" : ""launchd"",
  ""parentPid"" : 1,
  ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"",
  ""crashReporterKey"" : ""D2307553-8BC8-E7BE-DF5F-47E41435EDDA"",
  ""wakeTime"" : 18649,
  ""bridgeVersion"" : {""build"":""20P4252"",""train"":""7.4""},
  ""sleepWakeUUID"" : ""F0059711-38A1-4095-9C80-343D4CE97D84"",
  ""sip"" : ""enabled"",
  ""vmRegionInfo"" : ""0x18 is not in any region.  Bytes before following region: 140737488183272\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      VM_ALLOCATE              7ffffffd6000-7ffffffd7000 [    4K] r-x\/r-x SM=ALI  "",
  ""isCorpse"" : 1,
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  ""ktriageinfo"" : ""VM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\n"",
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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=1.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.5G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               768K        6 \nActivity Tracing                   256K        1 \nCG backing stores                 4448K       12 \nCG image                           380K       54 \nColorSync                          232K       28 \nCoreAnimation                     1648K      133 \nCoreGraphics                        16K        3 \nCoreServices                       624K        2 \nCoreUI image data                 5104K       59 \nFoundation                          36K        2 \nIOKit                             23.3M        3 \nKernel Alloc Once                    8K        1 \nMALLOC                             1.1G     1189 \nMALLOC guard page                   32K        8 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMach message                        16K        3 \nObjC additional data                15K        1 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        172K       43 \nStack                            172.3M       44 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      147.0M      285 \nVM_ALLOCATE (reserved)            96.0M        2         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            59.9M      782 \n__DATA_CONST                      32.9M      351 \n__DATA_DIRTY                      1663K      219 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       686.6M      229 \n__TEXT                           860.4M      764 \n__UNICODE                          592K        1 \ndyld private memory               1056K        3 \nmapped file                      565.4M       94 \nshared memory                     3104K       29 \n===========                     =======  ======= \nTOTAL                              3.8G     4360 \nTOTAL, minus reserved VM space     3.7G     4360 \n"",
  ""legacyInfo"" : {
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},
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}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.dev202302280423 (2023-02-28)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs"" format session

opened ChimeraX session  

> open /Users/Lucia/Downloads/GFP-GFP_DEF.cxs format session

opened ChimeraX session  

> open ""/Users/Lucia/Desktop/GFP,DEF AF structures.cxs"" format session

No such file/path: /Users/Lucia/Desktop/GFP,DEF AF structures.cxs  

> open ""/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs"" format session

opened ChimeraX session  

> open ""/Users/Lucia/Library/CloudStorage/GoogleDrive-lucia24mo@gmail.com/My
> Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05 17:51/אוניברסיטת תל
> אביב/Lucia - TAU shared files - MG lab/Results/Def project/GFP,DEF AF
> structures.cxs""

opened ChimeraX session  

> open ""/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs"" format session

opened ChimeraX session  

> open ""/Users/Lucia/Library/CloudStorage/GoogleDrive-lucia24mo@gmail.com/My
> Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05 17:51/אוניברסיטת תל
> אביב/Lucia - TAU shared files - MG lab/Results/Def project/GFP,DEF AF
> structures.cxs"" format session

opened ChimeraX session  

> open ""/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def_2d83f/Def_2d83f_unrelaxed_rank_004_alphafold2_ptm_model_1_seed_000.pdb""

Chain information for
Def_2d83f_unrelaxed_rank_004_alphafold2_ptm_model_1_seed_000.pdb #3  
---  
Chain | Description  
A | No description available  
  

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #3 models

> show #3 models

> hide #!4 models

> open ""/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs""

opened ChimeraX session  

> select #3.1/A:1

26 atoms, 25 bonds, 1 residue, 1 model selected  

> select #3.1/A

708 atoms, 719 bonds, 47 residues, 1 model selected  

> open ""/Users/Lucia/Library/CloudStorage/GoogleDrive-lucia24mo@gmail.com/My
> Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05 17:51/אוניברסיטת תל
> אביב/Lucia - TAU shared files - MG lab/Results/Def project/GFP,DEF AF
> structures.cxs"" format session

opened ChimeraX session  

> open /Applications/pdb2lr3.ent

pdb2lr3.ent title:  
Solution structure of the ANTI-fungal defensin DEF4 (MTR_8G070770) from
medicago truncatula (barrel clover) [more info...]  
  
Chain information for pdb2lr3.ent  
---  
Chain | Description | UniProt  
3.1/A 3.2/A 3.3/A 3.4/A 3.5/A 3.6/A 3.7/A 3.8/A 3.9/A 3.10/A 3.11/A 3.12/A
3.13/A 3.14/A 3.15/A 3.16/A 3.17/A 3.18/A 3.19/A 3.20/A | defensin |
G7L736_MEDTR 1-47  
  

> hide #!3 models

> show #!3 models

> hide #!4 models

> show #4.1 target m

> hide #!3 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> hide #4.1 models

> show #!4 models

> show #4.1 models

> hide #!4 models

> hide #3.2 models

> hide #3.4 models

> hide #3.5 models

> hide #3.6 models

> hide #3.8 models

> hide #3.10 models

> hide #3.12 models

> hide #3.14 models

> hide #3.15 models

> hide #3.13 models

> hide #3.11 models

> hide #3.7 models

> hide #3.16 models

> hide #3.17 models

> hide #3.18 models

> hide #3.19 models

> hide #3.20 models

> show #!3 models

> hide #3.9 models

> hide #3.3 models

> show #!4 models

> mmaker #3.2 to #4

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb, chain A
(#4) with pdb2lr3.ent, chain A (#3.2), sequence alignment score = 55.9  
RMSD between 5 pruned atom pairs is 1.110 angstroms; (across all 28 pairs:
22.938)  
  

> hide #!4 models

> mmaker #3.1 to #4

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb, chain A
(#4) with pdb2lr3.ent, chain A (#3.1), sequence alignment score = 58.9  
RMSD between 6 pruned atom pairs is 1.260 angstroms; (across all 28 pairs:
23.443)  
  

> show #!4 models

> select #4/A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #4/A:1-162

1269 atoms, 1301 bonds, 162 residues, 1 model selected  

> hide #!4 models

> show #!4 models

> select #4/A:134

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #4/A:134

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #4/A:285

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select #4/A:66-285

1753 atoms, 1792 bonds, 220 residues, 1 model selected  

> select #4/A:32

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #4/A:32-285

2004 atoms, 2047 bonds, 254 residues, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> color #3 #9437ffff models

> color #3 #d783ffff models

> color #3 #9437ffff models

> select #4/A:28

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #4/A:28-285

2022 atoms, 2065 bonds, 258 residues, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> select #4/A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #4/A:1-13

98 atoms, 103 bonds, 13 residues, 1 model selected  

> select #4/A:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #4/A:5-12

70 atoms, 75 bonds, 8 residues, 1 model selected  

> select #4/A:11-12

10 atoms, 9 bonds, 2 residues, 1 model selected  

> select #4/A:1-12

94 atoms, 99 bonds, 12 residues, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> color #3 #0433ffff models

> ui tool show ""Show Sequence Viewer""

> sequence chain #3.1/A

Alignment identifier is 3.1/A  

> select #3.1/A:32

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #3.1/A:1-32

454 atoms, 458 bonds, 32 residues, 1 model selected  

> select #3.1/A:2-6,31-34,41-46

201 atoms, 200 bonds, 15 residues, 1 model selected  

> select #3.1/A:1

26 atoms, 25 bonds, 1 residue, 1 model selected  

> select #3.1/A:1-31

447 atoms, 451 bonds, 31 residues, 1 model selected  

> hide sel cartoons

> view

> select #3.1/A:32

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #3.1/A:32

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #3.1/A:32

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #3.1/A:32-47

261 atoms, 263 bonds, 16 residues, 1 model selected  

> select clear

> select #4/A:13

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select #4/A:13-34

164 atoms, 166 bonds, 22 residues, 1 model selected  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel slab

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel tube/slab shape box

> nucleotides sel tube/slab shape muffler

> nucleotides sel ladder

> nucleotides sel stubs

> hide sel atoms

> show sel atoms

> hide sel atoms

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> select #4/A:31

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select #4/A:31-34

23 atoms, 22 bonds, 4 residues, 1 model selected  

> hide sel cartoons

> select #4/A:30

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select #4/A:30-31

8 atoms, 7 bonds, 2 residues, 1 model selected  

> select #4/A:29

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select #4/A:29-31

12 atoms, 11 bonds, 3 residues, 1 model selected  

> hide sel cartoons

> select #4/A:16

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select #4/A:16-27

106 atoms, 108 bonds, 12 residues, 1 model selected  

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb_A SES
surface #4.1: minimum, -13.27, mean -1.77, maximum 11.72  
To also show corresponding color key, enter the above coulombic command and
add key true  

> mlp sel

Map values for surface
""DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb_A SES
surface"": minimum -28.03, mean -5.924, maximum 22.59  
To also show corresponding color key, enter the above mlp command and add key
true  

> coulombic sel

Coulombic values for
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb_A SES
surface #4.1: minimum, -13.27, mean -1.77, maximum 11.72  
To also show corresponding color key, enter the above coulombic command and
add key true  

> color sel bychain

> color sel byhetero

> undo

> select clear

> select #3.1/A:31

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #3.1/A:31-47

268 atoms, 270 bonds, 17 residues, 1 model selected  

> color bfactor sel

268 atoms, 17 residues, atom bfactor range 0 to 74.3  

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for pdb2lr3.ent_A SES surface #3.1.1: minimum, -7.41, mean
5.86, maximum 18.37  
To also show corresponding color key, enter the above coulombic command and
add key true  

> undo

> select #3.1/A:31

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #3.1/A:31-47

268 atoms, 270 bonds, 17 residues, 1 model selected  

> hide sel surfaces

> select clear

> select #4/A:16

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select #4/A:16-34

143 atoms, 145 bonds, 19 residues, 1 model selected  

> hide sel surfaces

> show sel surfaces

> select clear

Unsupported scale factor (0.000000) detected on Display0  

QPainter::begin: Paint device returned engine == 0, type: 3  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.6.dev202302280423 (2023-02-28)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.8.101
OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,1
      Processor Name: 6-Core Intel Core i7
      Processor Speed: 2.2 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 9 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1968.100.17.0.0 (iBridge: 20.16.4252.0.0,0)
      OS Loader Version: 540.120.3~22

Software:

    System Software Overview:

      System Version: macOS 12.6.5 (21G531)
      Kernel Version: Darwin 21.6.0
      Time since boot: 2 days 1:13

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0000
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2

    Radeon Pro 555X:

      Chipset Model: Radeon Pro 555X
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x8
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67ef
      Revision ID: 0x00e3
      ROM Revision: 113-C980AL-075
      VBIOS Version: 113-C97501P-005
      EFI Driver Version: 01.A1.075
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2880 x 1800 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL P2419H:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 7QWDX63     
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Adapter Type: DVI or HDMI
          Adapter Firmware Version: ff.c1


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.0.1
    ChimeraX-AddCharge: 1.5.8
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.8
    ChimeraX-AtomicLibrary: 10.0.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.dev202302280423
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3.3
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.11
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.8
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.6.13
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.27.3
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.2
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.6
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.0.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.4
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.2.0
    jupyterlab-widgets: 3.0.5
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    pandas: 1.5.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.0.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.2
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.2
    python-dateutil: 2.8.2
    pytz: 2022.7.1
    pyzmq: 25.0.0
    qtconsole: 5.4.0
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.0.2
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    urllib3: 1.26.14
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.5
    zipp: 3.15.0

}}}
"	defect	closed	normal		Window Toolkit		duplicate		Tom Goddard				all	ChimeraX
