id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
9755	Drawing volume: object of type 'NoneType' has no len()	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open E:\\\实验室\\\其它\\\14-课题整理\\\1-model\\\23.7.28-UDP-
> Gal\\\cryosparc_P21_J1359_007_volume_map_sharp.mrc

Opened cryosparc_P21_J1359_007_volume_map_sharp.mrc as #1, grid size
384,384,384, pixel 1.1, shown at level 0.148, step 2, values float32  

> volume #1 step 1

> open E:/实验室/其它/14-课题整理/1-model/model更新/J1170(+UDP-gal)/PLO-
> COL_J1170-ABUV.pdb

Chain information for PLO-COL_J1170-ABUV.pdb #2  
---  
Chain | Description  
A B | No description available  
U V | No description available  
  

> ui tool show ""Fit in Map""

> fitmap #2 inMap #1

Fit molecule PLO-COL_J1170-ABUV.pdb (#2) to map
cryosparc_P21_J1359_007_volume_map_sharp.mrc (#1) using 20982 atoms  
average map value = 0.7665, steps = 60  
shifted from previous position = 0.2  
rotated from previous position = 0.156 degrees  
atoms outside contour = 1181, contour level = 0.14786  
  
Position of PLO-COL_J1170-ABUV.pdb (#2) relative to
cryosparc_P21_J1359_007_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99999932 -0.00002366 0.00116401 -0.29423223  
0.00002079 0.99999696 0.00246422 -0.53838341  
-0.00116406 -0.00246419 0.99999629 0.96742075  
Axis -0.90416399 0.42710770 0.00815487  
Axis point 0.00000000 392.10477109 226.58580708  
Rotation angle (degrees) 0.15615376  
Shift along axis 0.04397567  
  

> volume #1 color #1d40b2

> volume #1 color #482db2

> transparency #7 30

> transparency #1 30

> set bgColor white

> color #1 #4c37b2ff models

> transparency #1 30

> volume #1 level 0.4463

> volume #1 level 0.3468

> volume #1 level 0.322

> open E:/实验室/其它/14-课题整理/1-model/model更新/Apo/PLOD-COL_012-coot-0.pdb

Summary of feedback from opening E:/实验室/其它/14-课题整理/1-model/model更新/Apo/PLOD-
COL_012-coot-0.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 87 87 LYS V
593 GLU V 603 1 11  
Start residue of secondary structure not found: HELIX 129 129 LYS W 593 GLU W
603 1 11  
Start residue of secondary structure not found: HELIX 148 148 LYS X 593 GLU X
603 1 11  
  
Chain information for PLOD-COL_012-coot-0.pdb #3  
---  
Chain | Description  
A B C | No description available  
U | No description available  
V | No description available  
W | No description available  
X | No description available  
  

> hide #!2 models

> show #!3 cartoons

> hide #!3 atoms

> volume zone #1 nearAtoms #3 range 1.8 newMap true

Opened cryosparc_P21_J1359_007_volume_map_sharp.mrc zone as #4, grid size
384,384,384, pixel 1.1, shown at step 1, values float32  

> close #4

> ui tool show ""Fit in Map""

> fitmap #3 inMap #1

Fit molecule PLOD-COL_012-coot-0.pdb (#3) to map
cryosparc_P21_J1359_007_volume_map_sharp.mrc (#1) using 35111 atoms  
average map value = 0.537, steps = 88  
shifted from previous position = 1.63  
rotated from previous position = 2.92 degrees  
atoms outside contour = 17364, contour level = 0.32195  
  
Position of PLOD-COL_012-coot-0.pdb (#3) relative to
cryosparc_P21_J1359_007_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99922491 -0.03592968 -0.01608193 11.48059262  
0.03539048 0.99884031 -0.03264282 0.32269946  
0.01723612 0.03204837 0.99933769 -11.78278494  
Axis 0.63491098 -0.32699963 0.69997092  
Axis point 11.79087749 338.07656652 0.00000000  
Rotation angle (degrees) 2.92020286  
Shift along axis -1.06397507  
  

> show #!2 models

> show #!1 models

> volume zone #1 nearAtoms #3 range 1.8 newMap true

Opened cryosparc_P21_J1359_007_volume_map_sharp.mrc zone as #4, grid size
384,384,384, pixel 1.1, shown at step 1, values float32  

> hide #!2 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> show #!2 models

> show #!1 models

> volume subtract #1 #4 modelId #5

Opened volume difference as #5, grid size 384,384,384, pixel 1.1, shown at
step 1, values float32  

> hide #!2 models

> show #!2 models

> hide #!3 models

> volume #1 level 0.3476

> hide #!1 models

> hide #!5 models

> show #!5 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!2 models

> select ::name=""AKG""

20 atoms, 18 bonds, 2 residues, 1 model selected  

> hide #!5 models

> hide #!2 models

> open
> C:/Users/Administrator/Downloads/cryosparc_P21_J1377_008_volume_map_sharp.mrc

Opened cryosparc_P21_J1377_008_volume_map_sharp.mrc as #5, grid size
360,360,360, pixel 1.2, shown at level 0.139, step 2, values float32  

> close #5

[Repeated 1 time(s)]Traceback (most recent call last):  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume_viewer.py"", line
2295, in show_cb  
v.display = show  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
255, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py"", line 729, in
_set_display  
Model.display.fset(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\models.py"", line 324, in
_set_display  
Drawing.set_display(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
380, in set_display  
dp = self.display_positions  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
TypeError: object of type 'NoneType' has no len()  
  
TypeError: object of type 'NoneType' has no len()  
  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume_viewer.py"", line
2295, in show_cb  
v.display = show  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
255, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py"", line 729, in
_set_display  
Model.display.fset(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\models.py"", line 324, in
_set_display  
Drawing.set_display(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
380, in set_display  
dp = self.display_positions  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
TypeError: object of type 'NoneType' has no len()  
  
TypeError: object of type 'NoneType' has no len()  
  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume_viewer.py"", line
2295, in show_cb  
v.display = show  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
255, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py"", line 729, in
_set_display  
Model.display.fset(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\models.py"", line 324, in
_set_display  
Drawing.set_display(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
380, in set_display  
dp = self.display_positions  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
TypeError: object of type 'NoneType' has no len()  
  
TypeError: object of type 'NoneType' has no len()  
  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume_viewer.py"", line
2126, in close_map_cb  
log_equivalent_command(v.session, 'close #%s' % v.id_string)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\logging.py"",
line 29, in log_equivalent_command  
command.run(command_text, log_only=True)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line
2853, in run  
prev_annos = self._process_positional_arguments()  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line
2629, in _process_positional_arguments  
value, text = self._parse_arg(anno, text, session, False)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line
2488, in _parse_arg  
value, replacement, rest = annotation.parse(text, session)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line
1265, in parse  
models = aspec.evaluate(session).models  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\atomspec.py"",
line 1067, in evaluate  
models = session.models.list(**kw)  
AttributeError: 'NoneType' object has no attribute 'models'  
  
AttributeError: 'NoneType' object has no attribute 'models'  
  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\atomspec.py"",
line 1067, in evaluate  
models = session.models.list(**kw)  
  
See log for complete Python traceback.  
  

> select add #2

20982 atoms, 21569 bonds, 10 pseudobonds, 2558 residues, 3 models selected  

> select subtract #2

Nothing selected  

> select add #2

20982 atoms, 21569 bonds, 10 pseudobonds, 2558 residues, 3 models selected  

> show #!2 models

> select subtract #2

Nothing selected  
Traceback (most recent call last):  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume_viewer.py"", line
2295, in show_cb  
v.display = show  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
255, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py"", line 729, in
_set_display  
Model.display.fset(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\core\models.py"", line 324, in
_set_display  
Drawing.set_display(self, display)  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
380, in set_display  
dp = self.display_positions  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
TypeError: object of type 'NoneType' has no len()  
  
TypeError: object of type 'NoneType' has no len()  
  
File ""D:\ChimeraX\bin\lib\site-packages\chimerax\graphics\drawing.py"", line
394, in get_display_positions  
dp = ones((len(self._positions),), bool)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 536.99
OpenGL renderer: NVIDIA GeForce RTX 4060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: Acer
Model: Predator PHN16-71
OS: Microsoft Windows 10 专业版 (Build 19044)
Memory: 16,886,128,640
MaxProcessMemory: 137,438,953,344
CPU: 20 13th Gen Intel(R) Core(TM) i5-13500HX
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0

}}}
"	defect	closed	normal		Core		fixed						all	ChimeraX