id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9625 Graphics crash, macOS 12.6.7, AMD Radeon R9 M390 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x000000010df02600 (most recent call first): File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 1178 in draw_background File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 1978 in blend3d File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 1285 in _fill_texture_blend File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 1240 in _fill_textures File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 1147 in __init__ File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 610 in _texture_3d_planes File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 600 in _update_3d_texture_planes File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 548 in _update_planes File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 783 in draw File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 1364 in draw File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py"", line 773 in draw File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1555 in _draw_multiple File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1549 in File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 1252 in draw_transparent File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1547 in draw_transparent File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 254 in _draw_scene File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 177 in draw File ""/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 73 in draw_new_frame File 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""rollouts"" : [ { ""rolloutId"" : ""61301e3a61217b3110231469"", ""factorPackIds"" : { ""SIRI_FIND_MY_CONFIGURATION_FILES"" : ""6348493aa52bb16adc4e4d06"" }, ""deploymentId"" : 240000023 }, { ""rolloutId"" : ""6297d96be2c9387df974efa4"", ""factorPackIds"" : { }, ""deploymentId"" : 240000014 } ], ""experiments"" : [ { ""treatmentId"" : ""6dd670af-0633-45e4-ae5f-122ae4df02be"", ""experimentId"" : ""64406ba83deb637ac8a04419"", ""deploymentId"" : 900000017 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Volumes/msdata/elandino/subtomo/dicty_ribos_sorbitol/warp/nuc_relion/nucleusome_b2_TS_065_TM_angles_subtomos_3.1.star Summary of feedback from opening /Volumes/msdata/elandino/subtomo/dicty_ribos_sorbitol/warp/nuc_relion/nucleusome_b2_TS_065_TM_angles_subtomos_3.1.star --- notes | Using preset: ArtiaX / Artiax Default Preset expands to these ChimeraX commands: set bgColor black lighting depthCue false camera ortho 15 ['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0'] Opened Particle list nucleusome_b2_TS_065_TM_angles_subtomos_3.1.star with 18719 particles. > ui mousemode right ""delete picked particle"" Opened 065_13,06Apx.mrc as #1.1.1, grid size 676,960,334, pixel 13.1,13.1,13.1, shown at level 0.127, step 1, values float32 > artiax tomo #1.1.1 sliceDirection 0,0,1 > artiax view xy > artiax tomo #1.1.1 pixelSize 13.055999214127219 > artiax view xy > artiax tomo #1.1.1 pixelSize 13.055999214127219 > artiax view xy > artiax tomo #1.1.1 pixelSize 13.055999214127219 > artiax view xy set axis size 65.25 65.25 ['.arrow', '0', '0', '0', '65.25', '0', '0', '4.35', '17.4'] > artiax particles #1.2.1 originScaleFactor 4.35 > artiax view xy set axis size 65.28 65.28 ['.arrow', '0', '0', '0', '65.28', '0', '0', '4.352', '17.408'] > artiax particles #1.2.1 originScaleFactor 4.352 > artiax view xy > artiax particles #1.2.1 transScaleFactor 4.352 > artiax view xy > artiax hide axes > view orient > artiax tomo #1.1.1 slice 195 > artiax tomo #1.1.1 slice 205 > artiax tomo #1.1.1 slice 204 > artiax tomo #1.1.1 slice 203 > artiax tomo #1.1.1 slice 193 > artiax tomo #1.1.1 slice 194 > artiax tomo #1.1.1 slice 195 > artiax tomo #1.1.1 slice 194 > artiax tomo #1.1.1 slice 195 > artiax tomo #1.1.1 slice 196 > artiax tomo #1.1.1 slice 197 > artiax tomo #1.1.1 slice 198 > artiax tomo #1.1.1 slice 197 > artiax tomo #1.1.1 slice 196 > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > hide #!1.2.1 models > show #!1.2.1 models > view orient > ui mousemode right zoom > artiax tomo #1.1.1 slice 189 > artiax tomo #1.1.1 slice 209 > open > /Volumes/msdata/elandino/subtomo/dicty_ribos_sorbitol/warp/mrc/reconstruction/deconv/065_13,06Apx.mrc Opened 065_13,06Apx.mrc as #2, grid size 676,960,334, pixel 13.1,13.1,13.1, shown at level 0.0761, step 4, values float32 > artiax add tomo #2 Opened 065_13,06Apx.mrc as #1.1.2, grid size 676,960,334, pixel 13.1,13.1,13.1, shown at level 0.0761, step 1, values float32 > artiax tomo #1.1.2 sliceDirection 0,0,1 > artiax view xy > hide #!1.1.1 models > hide #!1.2.1 models > show #!1.2.1 models > artiax tomo #1.1.2 slice 190 > view orient > artiax tomo #1.1.2 slice 186 > artiax tomo #1.1.2 slice 294 > artiax tomo #1.1.2 slice 175 > hide #!1.1.2 models > hide #!1.2.1 models > open > /Volumes/msdata/elandino/subtomo/TRiC_closed/tomsa/Relion4.0_ManClean/input/CLEANED_allmotl_b1_open_closed_TRiC_1_righthanded_relion4.star > format star Summary of feedback from opening /Volumes/msdata/elandino/subtomo/TRiC_closed/tomsa/Relion4.0_ManClean/input/CLEANED_allmotl_b1_open_closed_TRiC_1_righthanded_relion4.star --- notes | 15 ['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0'] Opened Particle list CLEANED_allmotl_b1_open_closed_TRiC_1_righthanded_relion4.star with 383 particles. Opened 505_dose-filt_rec.mrc as #1.1.3, grid size 1016,1440,500, pixel 4, shown at level 86, step 1, values int8 > artiax tomo #1.1.3 sliceDirection 0,0,1 > artiax view xy > artiax tomo #1.1.3 pixelSize 8.704 > artiax view xy > artiax tomo #1.1.3 pixelSize 8.704 > artiax view xy > artiax tomo #1.1.3 pixelSize 8.704 > artiax view xy set axis size 32.64 32.64 ['.arrow', '0', '0', '0', '32.64', '0', '0', '2.176', '8.704'] > artiax particles #1.2.2 originScaleFactor 2.176 > artiax view xy > artiax particles #1.2.2 transScaleFactor 1.0 > artiax view xy Please enter a valid number for the pixelsize. > artiax particles #1.2.2 transScaleFactor 2.176 > artiax view xy > artiax particles #1.2.2 radius 56.44247 > artiax hide axes > artiax tomo #1.1.3 slice 256 > artiax tomo #1.1.3 slice 255 > artiax tomo #1.1.3 slice 254 > artiax tomo #1.1.3 slice 253 > hide #!1.2.2 models > show #!1.2.2 models > hide #!1.2.2 models > show #!1.2.2 models > volume flip #1.1.3 Opened 505_dose-filt_rec.mrc z flip as #2, grid size 1016,1440,500, pixel 8.7, shown at step 1, values int8 > volume flip #1.1.3 Opened 505_dose-filt_rec.mrc z flip as #3, grid size 1016,1440,500, pixel 8.7, shown at step 1, values int8 > volume flip #1.1.3 Opened 505_dose-filt_rec.mrc z flip as #4, grid size 1016,1440,500, pixel 8.7, shown at step 1, values int8 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.8.101 OpenGL renderer: AMD Radeon R9 M390 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac17,1 Processor Name: Quad-Core Intel Core i5 Processor Speed: 3,2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Memory: 16 GB System Firmware Version: 512.0.0.0.0 OS Loader Version: 540.120.3~22 SMC Version (system): 2.33f12 Software: System Software Overview: System Version: macOS 12.6.7 (21G651) Kernel Version: Darwin 21.6.0 Time since boot: 1 day 4:26 Graphics/Displays: AMD Radeon R9 M390: Chipset Model: AMD Radeon R9 M390 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 2 GB Vendor: AMD (0x1002) Device ID: 0x6819 Revision ID: 0x0000 ROM Revision: 113-C408WA-799 VBIOS Version: 113-C408W1-009 EFI Driver Version: 01.00.799 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-ArtiaX: 0.3 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 geomdl: 5.3.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 pandas: 2.0.1 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 starfile: 0.4.12 superqt: 0.4.1 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX