id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
9546	Error with saving mol2 file	Elizabeth.Gazaway@…	Eric Pettersen	"{{{
Hello,

When running save format mol2 command, I got the error message:

Traceback (most recent call last):
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/cmd_line/tool.py"", line 319, in execute
    cmd.run(cmd_text)
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2897, in run
    result = ci.function(session, **kw_args)
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/save_command/cmd.py"", line 75, in cmd_save
    Command(session, registry=registry).run(provider_cmd_text, log=log)
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2897, in run
    result = ci.function(session, **kw_args)
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/save_command/cmd.py"", line 90, in provider_save
    saver_info.save(session, path, **provider_kw)
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mol2/__init__.py"", line 27, in save
    write_mol2(session, path, status=session.logger.status, **kw)
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mol2/io.py"", line 269, in write_mol2
    atoms.sort(key=sort_key_func)
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mol2/io.py"", line 237, in <lambda>
    sort_key_func = lambda a: (a.structure.id,) + serial_sort(a)
NameError: name 'serial_sort' is not defined

NameError: name 'serial_sort' is not defined




}}}
"	defect	closed	normal		Input/Output		fixed						all	ChimeraX