id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9519 Load Toolshed cache: 'list' object has no attribute 'split' chimerax-bug-report@… Greg Couch "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-1062.18.1.el7.x86_64-x86_64-with-centos-7.7.1908-Core ChimeraX Version: 0.8 (2018-12-17) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 338, in __init__ self.init_available_from_cache(logger) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 445, in init_available_from_cache abc.load_from_cache() File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 61, in load_from_cache b = _build_bundle(d) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py"", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.8 (2018-12-17) How to cite UCSF ChimeraX Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/fileformats.py"", line 133, in open_file data = module.open(apath) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/__init__.py"", line 24, in open grids = image_stack_grids(paths) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/imagestack_grid.py"", line 21, in image_stack_grids d = imagestack_format.Image_Stack_Data(paths) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/imagestack_format.py"", line 34, in __init__ self.value_type = pillow_numpy_value_type(i.mode) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/imagestack_format.py"", line 148, in pillow_numpy_value_type raise SyntaxError('Image mode %s is not supported (%s)' % (image_mode, mnames)) File """", line None SyntaxError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB) During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/ui/gui.py"", line 553, in _qt_safe session.models.open([p]) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/models.py"", line 587, in open session, filenames, format=format, name=name, **kw) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/io.py"", line 457, in open_multiple_data models, status = open_func(session, paths, mname, **kw) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py"", line 3399, in open_map_format return open_map(session, stream, name=name, format=format, **kw) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py"", line 3037, in open_map grids = data.open_file(map_path, file_type = format) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/fileformats.py"", line 139, in open_file raise FileFormatError(value) chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB) chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/fileformats.py"", line 139, in open_file raise FileFormatError(value) See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/fileformats.py"", line 133, in open_file data = module.open(apath) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/__init__.py"", line 24, in open grids = image_stack_grids(paths) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/imagestack_grid.py"", line 21, in image_stack_grids d = imagestack_format.Image_Stack_Data(paths) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/imagestack_format.py"", line 34, in __init__ self.value_type = pillow_numpy_value_type(i.mode) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/imagestack/imagestack_format.py"", line 148, in pillow_numpy_value_type raise SyntaxError('Image mode %s is not supported (%s)' % (image_mode, mnames)) File """", line None SyntaxError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB) During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/ui/gui.py"", line 553, in _qt_safe session.models.open([p]) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/models.py"", line 587, in open session, filenames, format=format, name=name, **kw) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/io.py"", line 457, in open_multiple_data models, status = open_func(session, paths, mname, **kw) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py"", line 3399, in open_map_format return open_map(session, stream, name=name, format=format, **kw) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py"", line 3037, in open_map grids = data.open_file(map_path, file_type = format) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/fileformats.py"", line 139, in open_file raise FileFormatError(value) chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB) chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/map/data/fileformats.py"", line 139, in open_file raise FileFormatError(value) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 515.76 OpenGL renderer: Quadro P620/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Tool Shed can't reproduce all ChimeraX