id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9500 XMAS: change_pseudobonds_style: could not convert string to float: '0,' chimerax-bug-report@… Richard Scheltema "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x000000010fced600 (most recent call first): File ""/opt/sbgrid/i386-mac/chimerax/1.5/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 283 in event_loop File ""/opt/sbgrid/i386-mac/chimerax/1.5/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 884 in init File ""/opt/sbgrid/i386-mac/chimerax/1.5/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1035 in File ""/opt/sbgrid/i386-mac/chimerax/1.5/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/opt/sbgrid/i386-mac/chimerax/1.5/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-08-02 12:29:52.00 +0200"",""app_version"":""1.5.0"",""slice_uuid"":""5df621ee-554e-36a8-b448-93b2334e5480"",""build_version"":""1.5.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 12.6.2 (21G320)"",""incident_id"":""6C2C1964-9324-4F9C-A630-5D72B1B2E5A5"",""name"":""ChimeraX""} { ""uptime"" : 50000, ""procLaunch"" : ""2023-08-02 10:18:56.3404 +0200"", ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro16,1"", ""procStartAbsTime"" : 42625746645554, ""coalitionID"" : 3258, ""osVersion"" : { ""train"" : ""macOS 12.6.2"", ""build"" : ""21G320"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-08-02 12:29:50.6262 +0200"", ""incident"" : ""6C2C1964-9324-4F9C-A630-5D72B1B2E5A5"", ""bug_type"" : ""309"", ""pid"" : 19725, ""procExitAbsTime"" : 50479962837121, ""cpuType"" : ""X86-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/opt\/sbgrid\/*\/ChimeraX.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.5.0"",""CFBundleVersion"":""1.5.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""C1084B94-4A07-53B5-9A85-2355AD82ABA3"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""19CCC37A-33D6-4584-2DD0-78BED36A390F"", ""wakeTime"" : 9748, ""bridgeVersion"" : {""build"":""20P2059"",""train"":""7.1""}, ""sleepWakeUUID"" : ""D0CDDF4B-B2AF-4062-9C7C-A7D9E7BA3B1E"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. 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""P"", ""arch"" : ""x86_64"", ""base"" : 5822758912, ""size"" : 63373312, ""uuid"" : ""ccf8b470-9ccf-3558-9748-04374e88d1ea"", ""path"" : ""\/opt\/sbgrid\/*\/ChimeraX.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/scipy\/.dylibs\/libopenblas.0.dylib"", ""name"" : ""libopenblas.0.dylib"" } ], ""sharedCache"" : { ""base"" : 140703557423104, ""size"" : 19331678208, ""uuid"" : ""3172f8f5-c412-3210-95e0-1cfd89e01f8a"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=6.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=6.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 3648K 8 \nCG image 196K 36 \nColorSync 236K 28 \nCoreAnimation 120K 19 \nCoreGraphics 16K 3 \nCoreUI image data 3144K 40 \nFoundation 52K 2 \nKernel Alloc Once 8K 1 \nMALLOC 3.8G 464 \nMALLOC guard page 48K 10 \nMALLOC_MEDIUM (reserved) 1.2G 13 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 16K 2 \nObjC additional data 15K 1 \nOpenGL GLSL 384K 4 \nSTACK GUARD 168K 42 \nStack 149.3M 43 \nStack Guard 56.0M 1 \nVM_ALLOCATE 329.4M 256 \nVM_ALLOCATE (reserved) 384.0M 4 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 62.8M 836 \n__DATA_CONST 32.7M 347 \n__DATA_DIRTY 1644K 214 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 696.9M 282 \n__TEXT 930.6M 815 \n__UNICODE 592K 1 \ndyld private memory 1280K 3 \nmapped file 190.3M 55 \nshared memory 2996K 30 \n=========== ======= ======= \nTOTAL 8.1G 3568 \nTOTAL, minus reserved VM space 6.2G 3568 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5f72dc58705eff005a46b3a9"", ""factorPackIds"" : { }, ""deploymentId"" : 240000015 }, { ""rolloutId"" : ""6112e14f37f5d11121dcd519"", ""factorPackIds"" : { ""SIRI_TEXT_TO_SPEECH"" : ""634710168e8be655c1316aaa"" }, ""deploymentId"" : 240000231 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes1/cryosparc_P197_J770_map_sharp.mrc"" Opened cryosparc_P197_J770_map_sharp.mrc as #1, grid size 300,300,300, pixel 0.84, shown at level 0.00718, step 2, values float32 > open ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes2/cryosparc_P197_J776_005_volume_map_sharp.mrc"" Opened cryosparc_P197_J776_005_volume_map_sharp.mrc as #2, grid size 450,450,450, pixel 0.84, shown at level 0.134, step 2, values float32 > open ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes2/cryosparc_P197_J781_006_volume_map_sharp.mrc"" Opened cryosparc_P197_J781_006_volume_map_sharp.mrc as #3, grid size 450,450,450, pixel 0.84, shown at level 0.098, step 2, values float32 > surface dust #1 size 8.4 > surface dust #2 size 8.4 > surface dust #3 size 8.4 > select add #1 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #1,1,0,0,73.35,0,1,0,48.727,0,0,1,21.941 > view matrix models #1,1,0,0,67.432,0,1,0,61.636,0,0,1,65.522 > hide #!3 models > fitmap #1 inMap #2 Fit map cryosparc_P197_J770_map_sharp.mrc in map cryosparc_P197_J776_005_volume_map_sharp.mrc using 33713 points correlation = 0.6277, correlation about mean = 0.1895, overlap = 128.2 steps = 224, shift = 5.36, angle = 0.0797 degrees Position of cryosparc_P197_J770_map_sharp.mrc (#1) relative to cryosparc_P197_J776_005_volume_map_sharp.mrc (#2) coordinates: Matrix rotation and translation 0.99999932 -0.00116308 -0.00001622 63.12179987 0.00116307 0.99999903 -0.00076285 62.85346570 0.00001710 0.00076283 0.99999971 62.73337612 Axis 0.54840367 -0.01197720 0.83612796 Axis point -54918.73081233 13604.09595806 0.00000000 Rotation angle (degrees) 0.07969975 Shift along axis 86.31654756 > open ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes3/cryosparc_P197_J792_007_volume_map_sharp.mrc"" Opened cryosparc_P197_J792_007_volume_map_sharp.mrc as #4, grid size 450,450,450, pixel 0.84, shown at level 0.0932, step 2, values float32 > view matrix models > #1,1,-0.0011631,-1.6217e-05,62.5,0.0011631,1,-0.00076285,53.468,1.7104e-05,0.00076283,1,58.168 > undo > save ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes1/cryosparc_P197_J746_map_sharp.mrc"" models #1 > close #1 > open ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes1/cryosparc_P197_J746_map_sharp.mrc"" Opened cryosparc_P197_J746_map_sharp.mrc as #1, grid size 300,300,300, pixel 0.84, shown at level 0.00718, step 2, values float32 > open ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes1/cryosparc_P197_J770_map_sharp.mrc"" Opened cryosparc_P197_J770_map_sharp.mrc as #5, grid size 300,300,300, pixel 0.84, shown at level 0.00718, step 2, values float32 > close #1 > hide #!2 models > select add #5 2 models selected > view matrix models #5,1,0,0,51.186,0,1,0,56.553,0,0,1,79.865 > view matrix models #5,1,0,0,58.952,0,1,0,66.296,0,0,1,71.87 > fitmap #5 inMap #4 Fit map cryosparc_P197_J770_map_sharp.mrc in map cryosparc_P197_J792_007_volume_map_sharp.mrc using 33713 points correlation = 0.7575, correlation about mean = 0.3654, overlap = 104 steps = 180, shift = 10, angle = 0.425 degrees Position of cryosparc_P197_J770_map_sharp.mrc (#5) relative to cryosparc_P197_J792_007_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.99998711 -0.00096386 0.00498545 62.24168851 0.00099083 0.99998488 -0.00540888 63.66915768 -0.00498016 0.00541375 0.99997294 63.13195481 Axis 0.72922522 0.67147898 0.13170631 Axis point 0.00000000 -9315.71233593 -177.09722883 Rotation angle (degrees) 0.42517502 Shift along axis 96.45558723 > surface dust #5 size 8.4 > show #!3 models > show #!2 models > select subtract #5 Nothing selected > surface dust #2 size 8.4 > surface dust #3 size 8.4 > surface dust #4 size 8.4 > surface dust #5 size 8.4 > select add #5 2 models selected > hide #!4 models > hide #!3 models > hide #!2 models > save ""/Users/laura/Documents/RSC/Cartes cryo/Cartes1/J770.ccp4"" models #5 > open ""/Users/laura/Documents/RSC/Cartes cryo/Cartes1/J770.ccp4"" Opened J770.ccp4 as #1, grid size 300,300,300, pixel 0.84, shown at level 0.00718, step 2, values float32 > hide #!1 models > show #!4 models > hide #!4 models > ui tool show ""Map Coordinates"" > toolshed show > save ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes1/cryosparc_P197_J770_map_sharp.mrc"" models #5 > close #5 > open ""/Users/laura/Documents/RSC/Cartes > cryo/Cartes1/cryosparc_P197_J770_map_sharp.mrc"" Opened cryosparc_P197_J770_map_sharp.mrc as #5, grid size 300,300,300, pixel 0.84, shown at level 0.00718, step 2, values float32 > show #!2 models > open /Users/laura/Documents/RSC/compil_RSC_2(2).pdb Chain information for compil_RSC_2(2).pdb #6 --- Chain | Description A | No description available B | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available K | No description available M | No description available N | No description available > select add #2 2 models selected > select subtract #2 Nothing selected > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > show #!3 models > show #!4 models > hide #!5 models > hide #!6 models > open /Users/laura/Documents/RSC/CombineFocusedMaps_29/composite_map.ccp4 Opened composite_map.ccp4 as #7, grid size 300,300,300, pixel 0.84, shown at level 4.53, step 2, values float32 > hide #!1 models > hide #!2 models > hide #!3 models > hide #!4 models > surface dust #7 size 8.4 > volume #7 step 1 > open /Volumes/ibs-equipe- > petosa/CaRSC_Structure/cryosparc_P197_J610_006_volume_map_sharp.mrc Opened cryosparc_P197_J610_006_volume_map_sharp.mrc as #8, grid size 450,450,450, pixel 0.84, shown at level 0.0871, step 2, values float32 > volume #8 step 1 > surface dust #7 size 8.4 > surface dust #8 size 8.4 > volume #8 level 0.2037 > volume #8 level 0.2391 > surface dust #7 size 8.4 > surface dust #8 size 8.4 > open /Users/laura/Documents/RSC/CombineFocusedMaps_30/composite_map.ccp4 Opened composite_map.ccp4 as #9, grid size 300,300,300, pixel 0.84, shown at level 4.02, step 2, values float32 > volume #9 step 1 > hide #!8 models > select add #7 2 models selected > fitmap #7 inMap #9 Fit map composite_map.ccp4 in map composite_map.ccp4 using 269205 points correlation = 1, correlation about mean = 0.9999, overlap = 1.968e+07 steps = 40, shift = 0.00529, angle = 0.00411 degrees Position of composite_map.ccp4 (#7) relative to composite_map.ccp4 (#9) coordinates: Matrix rotation and translation 1.00000000 -0.00004964 0.00002951 0.00748722 0.00004965 1.00000000 -0.00004258 -0.00301688 -0.00002951 0.00004258 1.00000000 -0.00128371 Axis 0.59343575 0.41122406 0.69190230 Axis point 79.94345503 123.14827405 0.00000000 Rotation angle (degrees) 0.00411108 Shift along axis 0.00231437 > hide #!7 models > select subtract #7 Nothing selected > surface dust #9 size 8.4 > open /Users/laura/Downloads/6v8o.pdb 6v8o.pdb title: RSC core [more info...] Chain information for 6v8o.pdb #10 --- Chain | Description | UniProt 2 | unknown protein | 3 4 | unknown protein | 5 | unknown protein | 6 | unknown protein | 7 | unknown protein | C | chromatin structure-remodeling complex protein HTL1 | HTL1_YEAST D | chromatin structure-remodeling complex protein RSC14 | LDB7_YEAST E | chromatin structure-remodeling complex subunit RSC7 | RSC7_YEAST F | chromatin structure-remodeling complex subunit RSC2 | RSC2_YEAST G | remodel THE structure OF chromatin complex subunit 3 | RSC3_YEAST H | chromatin structure-remodeling complex subunit RSC4 | RSC4_YEAST I J K L | chromatin structure-remodeling complex protein RSC8 | RSC8_YEAST M | remodel THE structure OF chromatin complex subunit 6 | RSC6_YEAST N | chromatin structure-remodeling complex subunit RSC9 | RSC9_YEAST O | remodel THE structure OF chromatin complex subunit 58 | RSC58_YEAST Q | chromatin structure-remodeling complex subunit SFH1 | SFH1_YEAST R | nuclear protein STH1/NPS1 | STH1_YEAST S | remodel THE structure OF chromatin complex subunit 30 | RSC30_YEAST Non-standard residues in 6v8o.pdb #10 --- ZN — zinc ion > close #10 > open /Users/laura/Downloads/emd_21102.map Opened emd_21102.map as #10, grid size 288,288,288, pixel 1.44, shown at level 0.0146, step 2, values float32 > surface dust #9 size 8.4 > surface dust #10 size 14.4 > volume #10 step 1 > volume #10 level 0.03015 > save /Users/laura/Documents/RSC/CombineFocusedMaps_30/composite.mrc models > #9 > open > /Users/laura/Documents/RSC/LocalAnisoSharpen_34/cryosparc_P197_J768_flex_map_sharpened.ccp4 Opened cryosparc_P197_J768_flex_map_sharpened.ccp4 as #11, grid size 300,300,300, pixel 0.84, shown at level 0.00783, step 2, values float32 > hide #!9 models > surface dust #11 size 8.4 > volume #11 step 1 > open /Users/laura/Documents/RSC/CombineFocusedMaps_31/composite_map.ccp4 Opened composite_map.ccp4 as #12, grid size 300,300,300, pixel 0.84, shown at level 4.51, step 2, values float32 > hide #!11 models > volume #12 step 1 > surface dust #12 size 8.4 > volume #12 level 4.845 > open /Users/laura/Documents/RSC/CombineFocusedMaps_31/composite_map.ccp4 Opened composite_map.ccp4 as #13, grid size 300,300,300, pixel 0.84, shown at level 4.51, step 2, values float32 > hide #!12 models > show #!12 models > close #12 > show #!9 models > volume #13 step 1 > volume #13 level 4.02 > surface dust #9 size 8.4 > surface dust #13 size 8.4 > open /Users/laura/Documents/RSC/CombineFocusedMaps_31/composite_map.pdb Summary of feedback from opening /Users/laura/Documents/RSC/CombineFocusedMaps_31/composite_map.pdb --- warning | Ignored bad PDB record found on line 20334 Chain information for composite_map.pdb #12 --- Chain | Description A | No description available B | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available K | No description available M | No description available N | No description available > hide #!12 surfaces > hide #!12 cartoons > show #!12 atoms > style #!12 stick Changed 20180 atom styles > hide #!12 models > hide #!13 models > hide #!9 models > show #!12 models > ui tool show XMAS Peptide pair mapping of Xi evidence file: /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep1_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5.csv Unique peptide pairs: 938 out of 1003 Unique peptide pairs with pseudobonds: 105 Pseudobonds are stored in /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep1_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_12.pb Mapping information is stored in /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep1_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_12.tsv Peptide pair mapping of Xi evidence file: /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep2_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5.csv Unique peptide pairs: 850 out of 910 Unique peptide pairs with pseudobonds: 86 Pseudobonds are stored in /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep2_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_12.pb Mapping information is stored in /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep2_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_12.tsv Peptide pair mapping of Xi evidence file: /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep3_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5.csv Unique peptide pairs: 930 out of 1003 Unique peptide pairs with pseudobonds: 96 Pseudobonds are stored in /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep3_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_12.pb Mapping information is stored in /Users/laura/Documents/RSC/Xlink_Mass_SpecFDR_rpfdr5.0/RSC_Rep3_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_12.tsv > select subtract #16 218 pseudobonds, 2 models selected > select subtract #15 120 pseudobonds, 1 model selected > select subtract #14 Nothing selected > hide #15 models > hide #16 models > hide #14 models > show #15 models > hide #15 models > show #16 models Traceback (most recent call last): File ""/Users/laura/Library/Application Support/ChimeraX/1.5/site- packages/chimerax/xmas/tool.py"", line 1810, in line_edit.textChanged.connect(lambda text: function(text, File ""/Users/laura/Library/Application Support/ChimeraX/1.5/site- packages/chimerax/xmas/tool.py"", line 1917, in change_pseudobonds_style value = convert_function(value) ValueError: could not convert string to float: '0,' ValueError: could not convert string to float: '0,' File ""/Users/laura/Library/Application Support/ChimeraX/1.5/site- packages/chimerax/xmas/tool.py"", line 1917, in change_pseudobonds_style value = convert_function(value) See log for complete Python traceback. ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.8.101 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2,3 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 1916.60.2.0.0 (iBridge: 20.16.2059.0.0,0) OS Loader Version: 540.120.3~22 Software: System Software Overview: System Version: macOS 12.6.2 (21G320) Kernel Version: Darwin 21.6.0 Time since boot: 8 days 20:59 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-019 Option ROM Version: 113-D32206U1-019 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal PHL 258B6QU: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 59.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: UHB1949004141 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-XMAS: 1.1.2 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 et-xmlfile: 1.1.0 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openpyxl: 3.1.0 openvr: 1.23.701 packaging: 21.3 pandas: 1.5.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 QtRangeSlider: 0.1.5 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 seaborn: 0.12.2 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect closed normal Third Party fixed all ChimeraX