id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9422 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00007ff847fa08c0 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-07-21 15:53:22.00 +1000"",""app_version"":""1.6.1"",""slice_uuid"":""5df621ee-554e-36a8-b448-93b2334e5480"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.1 (22C65)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""0F44A0ED-5DCD-4100-BAB6-6C00A12BEB97""} { ""uptime"" : 120000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro16,1"", ""coalitionID"" : 12118, ""osVersion"" : { ""train"" : ""macOS 13.1"", ""build"" : ""22C65"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-07-21 15:53:03.1352 +1000"", ""incident"" : ""0F44A0ED-5DCD-4100-BAB6-6C00A12BEB97"", ""pid"" : 38229, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-07-20 22:07:10.4903 +1000"", ""procStartAbsTime"" : 118429225768779, ""procExitAbsTime"" : 128440691017121, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""F472A0A1-7E45-5970-8B71-F7D1B749B31F"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""E54DF0AE-6283-A5D6-C284-4F3DA370B02A"", ""throttleTimeout"" : 2147483647, ""wakeTime"" : 15, ""bridgeVersion"" : {""build"":""20P3045"",""train"":""7.2""}, ""sleepWakeUUID"" : ""EEE6AF2B-5889-4EC3-A53C-2B1265AAE852"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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: ""x86_64"", ""base"" : 4658839552, ""size"" : 64028672, ""uuid"" : ""24c9d5c5-4854-3af4-9550-cb0204044dfa"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" } ], ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=14.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=14.0G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 11.0M 13 \nCG image 448K 38 \nColorSync 248K 29 \nCoreAnimation 356K 31 \nCoreGraphics 16K 3 \nCoreUI image data 4508K 33 \nFoundation 36K 2 \nIOKit 23.3M 3 \nKernel Alloc Once 8K 1 \nMALLOC 13.3G 1099 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 16K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 116K 29 \nStack 150.2M 30 \nStack Guard 56.0M 1 \nVM_ALLOCATE 203.1M 247 \nVM_ALLOCATE (reserved) 128.0M 1 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 47.7M 766 \n__DATA_CONST 53.7M 397 \n__DATA_DIRTY 1833K 230 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 212.9M 150 \n__OBJC_RO 65.4M 1 \n__OBJC_RW 1988K 2 \n__TEXT 934.6M 769 \ndyld private memory 288K 3 \nmapped file 238.4M 74 \nshared memory 3524K 34 \n=========== ======= ======= \nTOTAL 15.6G 4010 \nTOTAL, minus reserved VM space 15.2G 4010 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6246d6a916a70b047e454124"", ""factorPackIds"" : { }, ""deploymentId"" : 240000010 }, { ""rolloutId"" : ""60356660bbe37970735c5624"", ""factorPackIds"" : { }, ""deploymentId"" : 240000027 } ], ""experiments"" : [ { ""treatmentId"" : ""c28e4ee6-1b08-4f90-8e05-2809e78310a3"", ""experimentId"" : ""6317d2003d24842ff850182a"", ""deploymentId"" : 400000013 }, { ""treatmentId"" : ""8ca8349c-e2bc-482c-9ca7-3907b48a5341"", ""experimentId"" : ""648b5a581b04c12d4127bbb6"", ""deploymentId"" : 400000001 } ] }, ""reportNotes"" : [ ""dyld_process_snapshot_create_for_process failed with 5"" ] } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 6E7F Summary of feedback from opening 6E7F fetched from pdb --- notes | Fetching compressed mmCIF 6e7f from http://files.rcsb.org/download/6e7f.cif Fetching CCD SO4 from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/SO4/SO4.cif 6e7f title: Crystal Structure of Human Inositol Polyphosphate Multikinase (IPMK) Catalytic Core Domain [more info...] Chain information for 6e7f #1 --- Chain | Description | UniProt A B | Inositol polyphosphate multikinase | IPMK_HUMAN 70-363 374-416 Non-standard residues in 6e7f #1 --- SO4 — sulfate ion 6e7f mmCIF Assemblies --- 1| author_defined_assembly 2| author_defined_assembly > set bgColor white > rainbow > select /B 1963 atoms, 1972 bonds, 2 pseudobonds, 276 residues, 2 models selected > hide sel surfaces > hide sel cartoons > hide sel atoms Alignment identifier is 1/B > close session > open /Users/hanadihoblos/Downloads/AF-Q8NFU5-F1-model_v4.pdb AF-Q8NFU5-F1-model_v4.pdb title: Alphafold monomer V2.0 prediction for inositol polyphosphate multikinase (Q8NFU5) [more info...] Chain information for AF-Q8NFU5-F1-model_v4.pdb #1 --- Chain | Description | UniProt A | inositol polyphosphate multikinase | IPMK_HUMAN 1-416 > set bgColor white > rainbow Alignment identifier is 1/A > select /A:1-3 20 atoms, 19 bonds, 3 residues, 1 model selected > select /A:1-157 1226 atoms, 1266 bonds, 157 residues, 1 model selected > select /A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:1-58 427 atoms, 441 bonds, 58 residues, 1 model selected > hide sel cartoons > select /A:415-416 17 atoms, 16 bonds, 2 residues, 1 model selected > select /A:301-416 932 atoms, 950 bonds, 116 residues, 1 model selected > select /A:416 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:351-416 532 atoms, 543 bonds, 66 residues, 1 model selected > select /A:416 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:375-416 339 atoms, 345 bonds, 42 residues, 1 model selected > hide sel cartoons > show sel cartoons > select /A:151-152 18 atoms, 18 bonds, 2 residues, 1 model selected > select /A:151-259 901 atoms, 923 bonds, 109 residues, 1 model selected > select /A:387 5 atoms, 4 bonds, 1 residue, 1 model selected > select /A:385-387 24 atoms, 24 bonds, 3 residues, 1 model selected > hbonds sel reveal true 3 hydrogen bonds found > open 6E7F 6e7f title: Crystal Structure of Human Inositol Polyphosphate Multikinase (IPMK) Catalytic Core Domain [more info...] Chain information for 6e7f #2 --- Chain | Description | UniProt A B | Inositol polyphosphate multikinase | IPMK_HUMAN 70-363 374-416 Non-standard residues in 6e7f #2 --- SO4 — sulfate ion 6e7f mmCIF Assemblies --- 1| author_defined_assembly 2| author_defined_assembly > ui tool show Matchmaker > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker AF-Q8NFU5-F1-model_v4.pdb, chain A (#1) with 6e7f, chain B (#2), sequence alignment score = 1183.7 RMSD between 199 pruned atom pairs is 0.641 angstroms; (across all 234 pairs: 2.191) > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker AF-Q8NFU5-F1-model_v4.pdb, chain A (#1) with 6e7f, chain B (#2), sequence alignment score = 1183.7 RMSD between 199 pruned atom pairs is 0.641 angstroms; (across all 234 pairs: 2.191) > select #2/A#2/B 3923 atoms, 3951 bonds, 4 pseudobonds, 544 residues, 2 models selected > color (#!2 & sel) medium blue > color (#!2 & sel) cornflower blue > select clear > select #1/A 3328 atoms, 3412 bonds, 3 pseudobonds, 416 residues, 2 models selected > color (#!1 & sel) light gray Destroying pre-existing alignment with identifier 1/A Alignment identifier is 1/A > select clear > select Mg Nothing selected > select clear > color bynucleotide > select 7251 atoms, 7363 bonds, 7 pseudobonds, 960 residues, 4 models selected > color sel bynucleotide > coulombic sel The following heavy (non-hydrogen) atoms are missing, which may result in inaccurate electrostatics: 6e7f #2/B GLU 172 OE2 6e7f #2/B GLU 172 CG 6e7f #2/B GLU 172 CB 6e7f #2/B GLU 172 CD 6e7f #2/B GLU 172 OE1 6e7f #2/A GLU 172 OE2 6e7f #2/A GLU 172 CG 6e7f #2/A GLU 172 CB 6e7f #2/A GLU 172 CD 6e7f #2/A GLU 172 OE1 Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for AF-Q8NFU5-F1-model_v4.pdb_A SES surface #1.2: minimum, -18.43, mean -0.54, maximum 14.41 Coulombic values for 6e7f_A SES surface #2.2: minimum, -20.32, mean -0.85, maximum 14.03 Coulombic values for 6e7f_B SES surface #2.3: minimum, -18.16, mean -0.91, maximum 14.38 To also show corresponding color key, enter the above coulombic command and add key true > hide sel surfaces > select ::name=""SO4"" 15 atoms, 12 bonds, 3 residues, 1 model selected > color bfactor sel 15 atoms, 3 residues, atom bfactor range 65.4 to 170 > coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Assigning partial charges to residue SO4 (net charge -2) with am1-bcc method Running ANTECHAMBER command: /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i /var/folders/xm/c_0yvjd567bc4mzn7n3bl9340000gn/T/tmpi3iptbof/ante.in.mol2 -fi mol2 -o /var/folders/xm/c_0yvjd567bc4mzn7n3bl9340000gn/T/tmpi3iptbof/ante.out.mol2 -fo mol2 -c bcc -nc -2 -j 5 -s 2 -dr n (SO4) `` (SO4) `Welcome to antechamber 20.0: molecular input file processor.` (SO4) `` (SO4) `Info: Finished reading file (/var/folders/xm/c_0yvjd567bc4mzn7n3bl9340000gn/T/tmpi3iptbof/ante.in.mol2); atoms read (5), bonds read (4).` (SO4) `Info: Determining atomic numbers from atomic symbols which are case sensitive.` (SO4) `Running: /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac` (SO4) `` (SO4) `` (SO4) `Running: /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff` (SO4) `Info: Total number of electrons: 50; net charge: -2` (SO4) `` (SO4) `Running: /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/sqm -O -i sqm.in -o sqm.out` (SO4) `` (SO4) `Running: /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/am1bcc -i ANTECHAMBER_AM1BCC_PRE.AC -o ANTECHAMBER_AM1BCC.AC -f ac -p /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/dat/antechamber/BCCPARM.DAT -s 2 -j 1` (SO4) `` (SO4) `Running: /Applications/ChimeraX-1.6.1.app/Contents/bin/amber20/bin/atomtype -f ac -p bcc -o ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC` (SO4) `` Charges for residue SO4 determined Coulombic values for 6e7f_A SES surface #2.4: minimum, -15.22, mean -13.95, maximum -11.20 Coulombic values for 6e7f_B SES surface #2.5: minimum, -17.01, mean -15.10, maximum -11.83 To also show corresponding color key, enter the above coulombic command and add key true > coulombic sel Coulombic values for 6e7f_A SES surface #2.4: minimum, -15.22, mean -13.95, maximum -11.20 Coulombic values for 6e7f_B SES surface #2.5: minimum, -17.01, mean -15.10, maximum -11.83 To also show corresponding color key, enter the above coulombic command and add key true > style sel sphere Changed 15 atom styles > mlp sel mlp: no amino acids specified > mlp sel mlp: no amino acids specified > color sel byhetero > select clear > select methyl 476 atoms, 284 residues, 2 models selected > select clear > select Mg Nothing selected > select S 34 atoms, 34 residues, 2 models selected > select clear > select ::name=""MET"" 160 atoms, 140 bonds, 20 residues, 2 models selected > select #1/A:130 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:130 8 atoms, 7 bonds, 1 residue, 1 model selected > hbonds sel reveal true 4 hydrogen bonds found > hbonds sel reveal true 4 hydrogen bonds found > select #1/A:387 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1/A:385-387 24 atoms, 24 bonds, 3 residues, 1 model selected > select #1/A:387 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1/A:387 5 atoms, 4 bonds, 1 residue, 1 model selected Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.9.51 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0) OS Loader Version: 564.40.4~55 Software: System Software Overview: System Version: macOS 13.1 (22C65) Kernel Version: Darwin 22.2.0 Time since boot: 5 days, 1 hour, 14 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-020 Option ROM Version: 113-D32206U1-020 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Display Asleep: Yes Connection Type: Internal LG HDR 4K: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Display Asleep: Yes Connection Type: DVI or HDMI Adapter Firmware Version: 2.55 Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX