id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 924 Clipper plugin not pulling dependency from PyPI Tristan Croll Conrad Huang "Linux builds of the core of Clipper-Python are now on PyPI (at https://pypi.org/project/clipper-python/#files) and some time back I rewrote the ChimeraX Clipper plugin to rely on that. This *was* working fine, but when I downloaded the latest ChimeraX build and ran `make app-install` in the Clipper directory, I got the below: {{{Executing: devel install . running build running build_py running test Searching for Clipper-Python>=0.1 Reading https://pypi.python.org/simple/Clipper-Python/ No local packages or working download links found for Clipper-Python>=0.1 Traceback (most recent call last): File ""/home/tic20/apps/chimerax/lib/python3.6/distutils/core.py"", line 148, in setup dist.run_commands() File ""/home/tic20/apps/chimerax/lib/python3.6/distutils/dist.py"", line 955, in run_commands self.run_command(cmd) File ""/home/tic20/apps/chimerax/lib/python3.6/distutils/dist.py"", line 974, in run_command cmd_obj.run() File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/setuptools/command/test.py"", line 214, in run installed_dists = self.install_dists(self.distribution) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/setuptools/command/test.py"", line 205, in install_dists ir_d = dist.fetch_build_eggs(dist.install_requires) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/setuptools/dist.py"", line 453, in fetch_build_eggs replace_conflicting=True, File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/pkg_resources/__init__.py"", line 866, in resolve replace_conflicting=replace_conflicting File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/pkg_resources/__init__.py"", line 1146, in best_match return self.obtain(req, installer) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/pkg_resources/__init__.py"", line 1158, in obtain return installer(requirement) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/setuptools/dist.py"", line 520, in fetch_build_egg return cmd.easy_install(req) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/setuptools/command/easy_install.py"", line 666, in easy_install raise DistutilsError(msg) distutils.errors.DistutilsError: Could not find suitable distribution for Requirement.parse('Clipper-Python>=0.1') During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 347, in _run_setup setuptools.setup(**kw) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/setuptools/__init__.py"", line 129, in setup return distutils.core.setup(**attrs) File ""/home/tic20/apps/chimerax/lib/python3.6/distutils/core.py"", line 163, in setup raise SystemExit(""error: "" + str(msg)) SystemExit: error: Could not find suitable distribution for Requirement.parse('Clipper-Python>=0.1') Traceback (most recent call last): File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/chimerax/core/commands/devel.py"", line 151, in _run unbound_method(bb, *args, **kw) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 15, in hack return _func(*args, **kw) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 63, in make_install self.make_wheel(test=test, debug=debug) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 15, in hack return _func(*args, **kw) File ""/home/tic20/apps/chimerax/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 57, in make_wheel raise RuntimeError(""Building wheel failed"") RuntimeError: Building wheel failed Executing: exit Exiting ... }}} Yet when I manually install Clipper-Python via `ChimeraX -m pip install ... ` it works fine, and then the ChimeraX Clipper plugin installs without complaint. {{{ [tic20@dhcp-10-248-204-98 clipper]$ ChimeraX -m pip install clipper-python Collecting clipper-python Using cached Clipper_Python-0.1.0-cp36-cp36m-manylinux1_x86_64.whl Requirement already satisfied: numpy>=1.13.1 in /home/tic20/apps/chimerax/lib/python3.6/site-packages (from clipper-python) Installing collected packages: clipper-python Successfully installed clipper-python-0.1.0 Lock 140690030043768 acquired on /home/tic20/.cache/ChimeraX/0.1/toolshed/bundle_info.cache.lock Lock 140690030043768 released on /home/tic20/.cache/ChimeraX/0.1/toolshed/bundle_info.cache.lock [tic20@dhcp-10-248-204-98 clipper]$ ChimeraX -m pip install Clipper-Python Requirement already satisfied: Clipper-Python in /home/tic20/apps/chimerax/lib/python3.6/site-packages Requirement already satisfied: numpy>=1.13.1 in /home/tic20/apps/chimerax/lib/python3.6/site-packages (from Clipper-Python) Lock 140375704882032 acquired on /home/tic20/.cache/ChimeraX/0.1/toolshed/bundle_info.cache.lock Lock 140375704882032 released on /home/tic20/.cache/ChimeraX/0.1/toolshed/bundle_info.cache.lock }}}" defect closed major Tool Shed can't reproduce all ChimeraX